Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316750 | XP_003594164.1 | 100.000 | 208 | 0 | 0 | 1 | 208 | 135 | 342 | 1.82e-157 | 449 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316750 | sp|Q56X52|AOX4_ARATH | 80.976 | 205 | 36 | 2 | 1 | 202 | 147 | 351 | 1.88e-128 | 368 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035980 | Msa0316750 | 0.830577 | 2.716164e-55 | -8.615850e-47 |
| Msa0036060 | Msa0316750 | 0.837308 | 5.610694e-57 | -8.615850e-47 |
| Msa0049330 | Msa0316750 | 0.806961 | 6.379288e-50 | -8.615850e-47 |
| Msa0197180 | Msa0316750 | 0.969880 | 8.888501e-131 | -8.615850e-47 |
| Msa0238940 | Msa0316750 | 0.969961 | 6.743973e-131 | -8.615850e-47 |
| Msa0304110 | Msa0316750 | 0.800216 | 1.599178e-48 | -8.615850e-47 |
| Msa0308770 | Msa0316750 | 0.916696 | 1.305693e-85 | -8.615850e-47 |
| Msa0316750 | Msa0341190 | 0.809948 | 1.470100e-50 | -8.615850e-47 |
| Msa0316750 | Msa0376340 | 0.865596 | 5.266345e-65 | -8.615850e-47 |
| Msa0316750 | Msa0424780 | 0.863388 | 2.579863e-64 | -8.615850e-47 |
| Msa0316750 | Msa0475240 | 0.801729 | 7.849098e-49 | -8.615850e-47 |
| Msa0316750 | Msa0516160 | 0.864708 | 1.001162e-64 | -8.615850e-47 |
| Msa0316750 | Msa0579350 | 0.800321 | 1.522616e-48 | -8.615850e-47 |
| Msa0316750 | Msa0629440 | -0.835617 | 1.511935e-56 | -8.615850e-47 |
| Msa0316750 | Msa0644770 | -0.803006 | 4.283300e-49 | -8.615850e-47 |
| Msa0316750 | Msa0667070 | -0.825383 | 4.831214e-54 | -8.615850e-47 |
| Msa0316750 | Msa0713210 | 0.824925 | 6.196431e-54 | -8.615850e-47 |
| Msa0316750 | Msa0713220 | 0.836066 | 1.163358e-56 | -8.615850e-47 |
| Msa0316750 | Msa0713230 | 0.860641 | 1.792551e-63 | -8.615850e-47 |
| Msa0316750 | Msa0754350 | 0.816142 | 6.441760e-52 | -8.615850e-47 |
| Msa0316750 | Msa0755080 | 0.880797 | 4.080860e-70 | -8.615850e-47 |
| Msa0316750 | Msa0755090 | 0.805362 | 1.384928e-49 | -8.615850e-47 |
| Msa0316750 | Msa0796950 | 0.857641 | 1.421244e-62 | -8.615850e-47 |
| Msa0316750 | Msa0797000 | 0.825056 | 5.772837e-54 | -8.615850e-47 |
| Msa0316750 | Msa0801360 | 0.804034 | 2.622397e-49 | -8.615850e-47 |
| Msa0316750 | Msa0834450 | 0.867378 | 1.430767e-65 | -8.615850e-47 |
| Msa0316750 | Msa0834460 | 0.817920 | 2.567905e-52 | -8.615850e-47 |
| Msa0316750 | Msa0839830 | 0.806833 | 6.788482e-50 | -8.615850e-47 |
| Msa0316750 | Msa0982590 | 0.813628 | 2.324675e-51 | -8.615850e-47 |
| Msa0316750 | Msa1012920 | 0.808331 | 3.264490e-50 | -8.615850e-47 |
| Msa0316750 | Msa1075590 | 0.805021 | 1.632487e-49 | -8.615850e-47 |
| Msa0316750 | Msa1137090 | 0.809060 | 2.280713e-50 | -8.615850e-47 |
| Msa0316750 | Msa1172360 | 0.800370 | 1.487888e-48 | -8.615850e-47 |
| Msa0316750 | Msa1174870 | 0.802193 | 6.302600e-49 | -8.615850e-47 |
| Msa0316750 | Msa1241820 | 0.808526 | 2.965966e-50 | -8.615850e-47 |
| Msa0316750 | Msa1412620 | -0.801328 | 9.482365e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316750 | MtrunA17_Chr2g0289361 | 100.000 | 208 | 0 | 0 | 1 | 208 | 135 | 342 | 1.68e-161 | 449 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316750 | AT4G22260.1 | 80.976 | 205 | 36 | 2 | 1 | 202 | 147 | 351 | 1.91e-129 | 368 |
Find 51 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCAGTAAATAGTTGAAATT+TGG | 0.175229 | 2_4:-14018151 | Msa0316750:three_prime_UTR |
| GGAGGTGACTTGTATTTATT+TGG | 0.198866 | 2_4:-14018994 | Msa0316750:intron |
| AATGCATCATTTGCTCATTA+TGG | 0.218823 | 2_4:-14020386 | Msa0316750:CDS |
| ATCGTAGGCCTTCTAGTATT+TGG | 0.244860 | 2_4:+14018863 | None:intergenic |
| ATGAGGGCTTGCCAAACTTA+TGG | 0.280986 | 2_4:-14018411 | Msa0316750:CDS |
| TAATACTTACATGCCATTCT+TGG | 0.285610 | 2_4:+14019910 | None:intergenic |
| CTCCACATGTATGAGAGTTT+TGG | 0.303801 | 2_4:-14020463 | Msa0316750:CDS |
| ATGTCTTACTTCACCTTAGC+TGG | 0.330534 | 2_4:+14018270 | None:intergenic |
| GGTCTATGGTTGCAGGAACT+TGG | 0.368546 | 2_4:-14020021 | Msa0316750:intron |
| ACCGGAGGTTCCCATAAGTT+TGG | 0.376142 | 2_4:+14018400 | None:intergenic |
| TGAGGGCTTGCCAAACTTAT+GGG | 0.400759 | 2_4:-14018410 | Msa0316750:CDS |
| AATACTTACATGCCATTCTT+GGG | 0.424208 | 2_4:+14019911 | None:intergenic |
| CAGATGAATTTCAAACCTCC+AGG | 0.431269 | 2_4:-14018889 | Msa0316750:CDS |
| CCAGGGTTCCAAATACTAGA+AGG | 0.451414 | 2_4:-14018871 | Msa0316750:CDS |
| GTTGCTGTGAATTATTATAC+AGG | 0.462624 | 2_4:-14019015 | Msa0316750:CDS |
| GGAATGCTTGGTGGTTTGAC+CGG | 0.468487 | 2_4:-14019996 | Msa0316750:CDS |
| AACTTATGACAAATTTATCA+AGG | 0.473190 | 2_4:-14019556 | Msa0316750:CDS |
| CAATATGTTGAGCAAGAAAC+CGG | 0.493032 | 2_4:+14019977 | None:intergenic |
| CTATGGTTGCAGGAACTTGG+AGG | 0.498887 | 2_4:-14020018 | Msa0316750:intron |
| AGGAACTTGGAGGGAATGCT+TGG | 0.505846 | 2_4:-14020008 | Msa0316750:CDS |
| AACTTGGAGGGAATGCTTGG+TGG | 0.513318 | 2_4:-14020005 | Msa0316750:CDS |
| ATGCATTTCATTCCAGCTCT+CGG | 0.525237 | 2_4:+14020402 | None:intergenic |
| GCCAAACTTATGGGAACCTC+CGG | 0.533794 | 2_4:-14018401 | Msa0316750:CDS |
| TAATAATTCACAGCAACCTC+AGG | 0.534240 | 2_4:+14019021 | None:intergenic |
| GTATTTAATAAGCCCAAGAA+TGG | 0.539687 | 2_4:-14019923 | Msa0316750:CDS |
| CCTTCTAGTATTTGGAACCC+TGG | 0.541899 | 2_4:+14018871 | None:intergenic |
| ACAATTGAAGCAGGCTGTGA+AGG | 0.550083 | 2_4:-14018330 | Msa0316750:CDS |
| TTCACAGCAACCTCAGGAGC+CGG | 0.550908 | 2_4:+14019027 | None:intergenic |
| TCAGTCTGTACAATTGAAGC+AGG | 0.558599 | 2_4:-14018339 | Msa0316750:CDS |
| CTGCATATGAATGAGGCGAC+CGG | 0.574364 | 2_4:+14018382 | None:intergenic |
| CTGAACATTGTAAGACAATG+AGG | 0.580218 | 2_4:-14018428 | Msa0316750:CDS |
| TGTTACTTCTAATCCAGCTA+AGG | 0.582853 | 2_4:-14018283 | Msa0316750:CDS |
| GACAAATTTATCAAGGAACA+AGG | 0.592572 | 2_4:-14019549 | Msa0316750:CDS |
| AGATGAATTTCAAACCTCCA+GGG | 0.596112 | 2_4:-14018888 | Msa0316750:CDS |
| TCTGCATCTGCATATGAATG+AGG | 0.596959 | 2_4:+14018375 | None:intergenic |
| CTCATACACCCTCATTGTAG+AGG | 0.605748 | 2_4:+14018120 | None:intergenic |
| TATGGTTGCAGGAACTTGGA+GGG | 0.615759 | 2_4:-14020017 | Msa0316750:intron |
| TCTAGTATTTGGAACCCTGG+AGG | 0.616493 | 2_4:+14018874 | None:intergenic |
| GCTGTGAATTATTATACAGG+AGG | 0.620648 | 2_4:-14019012 | Msa0316750:CDS |
| ATTTCTATATAATACTGTAG+AGG | 0.622575 | 2_4:+14018184 | None:intergenic |
| AACCAAAACTCTCATACATG+TGG | 0.629436 | 2_4:+14020461 | None:intergenic |
| GATGAGATTCCTCTACAATG+AGG | 0.633764 | 2_4:-14018129 | Msa0316750:three_prime_UTR |
| CATATGAATGAGGCGACCGG+AGG | 0.633813 | 2_4:+14018385 | None:intergenic |
| ATGAGATTCCTCTACAATGA+GGG | 0.634949 | 2_4:-14018128 | Msa0316750:three_prime_UTR |
| AATACTAGAAGGCCTACGAT+AGG | 0.636700 | 2_4:-14018860 | Msa0316750:intron |
| TTTCAAGACATACCTATCGT+AGG | 0.654868 | 2_4:+14018848 | None:intergenic |
| AGCTAAGGTGAAGTAAGACA+TGG | 0.655418 | 2_4:-14018268 | Msa0316750:exon |
| TGAACATTGTAAGACAATGA+GGG | 0.657949 | 2_4:-14018427 | Msa0316750:CDS |
| TCATTCATATGCAGATGCAG+AGG | 0.664876 | 2_4:-14018373 | Msa0316750:CDS |
| AAGAAAAGAAATAGAATACG+AGG | 0.667273 | 2_4:-14018213 | Msa0316750:three_prime_UTR |
| AAATTTATCAAGGAACAAGG+AGG | 0.753148 | 2_4:-14019546 | Msa0316750:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATAATCATAATCAATGA+AGG | - | chr2_4:14019335-14019354 | Msa0316750:intron | 15.0% |
| !!! | TTTGAGTTTTATTCTTAAAT+TGG | + | chr2_4:14019779-14019798 | None:intergenic | 15.0% |
| !! | AAAAAGATAAACAATGTTTA+GGG | + | chr2_4:14019833-14019852 | None:intergenic | 15.0% |
| !! | AAAAAAGATAAACAATGTTT+AGG | + | chr2_4:14019834-14019853 | None:intergenic | 15.0% |
| !!! | TTGTTTATCTTTTTTGAATA+TGG | - | chr2_4:14019839-14019858 | Msa0316750:intron | 15.0% |
| !! | AACTTATGACAAATTTATCA+AGG | - | chr2_4:14018947-14018966 | Msa0316750:intron | 20.0% |
| !!! | ATGTTTTCATAATTAAGTGT+TGG | - | chr2_4:14019060-14019079 | Msa0316750:intron | 20.0% |
| !!! | ATTATGATTCAATGGTTTTA+TGG | + | chr2_4:14019086-14019105 | None:intergenic | 20.0% |
| !! | AATAAATGAAAGCAAATAGA+TGG | - | chr2_4:14019278-14019297 | Msa0316750:intron | 20.0% |
| !! | AAATCTAGGTAGAAATATAA+TGG | + | chr2_4:14019543-14019562 | None:intergenic | 20.0% |
| !!! | CATTTTTATTTTCATTGCAA+GGG | - | chr2_4:14019727-14019746 | Msa0316750:intron | 20.0% |
| !!! | ATTTTTATTTTCATTGCAAG+GGG | - | chr2_4:14019728-14019747 | Msa0316750:intron | 20.0% |
| !! | AACTCAAATGTTTAATTAAG+TGG | - | chr2_4:14019791-14019810 | Msa0316750:intron | 20.0% |
| !! | AAAAGATAAACAATGTTTAG+GGG | + | chr2_4:14019832-14019851 | None:intergenic | 20.0% |
| !!! | TACTGCTTTAAAAAAATCAT+AGG | + | chr2_4:14019975-14019994 | None:intergenic | 20.0% |
| !! | ATTTCTATATAATACTGTAG+AGG | + | chr2_4:14020322-14020341 | None:intergenic | 20.0% |
| !!! | ATTTTTTTCCTTTAATGTGC+TGG | - | chr2_4:14018157-14018176 | Msa0316750:three_prime_UTR | 25.0% |
| ! | CTCTTCAAAAACAAATCTTA+TGG | + | chr2_4:14018240-14018259 | None:intergenic | 25.0% |
| !!! | AAGATTTGTTTTTGAAGAGT+CGG | - | chr2_4:14018241-14018260 | Msa0316750:three_prime_UTR | 25.0% |
| ! | ATACTGTGAATATTAACACA+TGG | - | chr2_4:14018273-14018292 | Msa0316750:exon | 25.0% |
| ! | TACTGTGAATATTAACACAT+GGG | - | chr2_4:14018274-14018293 | Msa0316750:exon | 25.0% |
| ! | TGAAAAGAGACAAATATTGA+GGG | - | chr2_4:14018324-14018343 | Msa0316750:CDS | 25.0% |
| ! | TTTATTGCATGCAATAAGTT+TGG | - | chr2_4:14018460-14018479 | Msa0316750:CDS | 25.0% |
| ! | TTATTGCATGCAATAAGTTT+GGG | - | chr2_4:14018461-14018480 | Msa0316750:CDS | 25.0% |
| ! | AAAAATTGAAAGATGTAGCA+GGG | + | chr2_4:14018646-14018665 | None:intergenic | 25.0% |
| ! | AAAAAATTGAAAGATGTAGC+AGG | + | chr2_4:14018647-14018666 | None:intergenic | 25.0% |
| !!! | TGCTACATCTTTCAATTTTT+TGG | - | chr2_4:14018646-14018665 | Msa0316750:intron | 25.0% |
| !! | TTTGAAACTTATCATATGCT+TGG | + | chr2_4:14018706-14018725 | None:intergenic | 25.0% |
| ! | AAAGAGACCAAATGAAAAAT+TGG | - | chr2_4:14018723-14018742 | Msa0316750:intron | 25.0% |
| !! | ATAAGTGCCAATTTTTCATT+TGG | + | chr2_4:14018733-14018752 | None:intergenic | 25.0% |
| ! | ATGAAAAATTGGCACTTATT+TGG | - | chr2_4:14018734-14018753 | Msa0316750:intron | 25.0% |
| ! | TTATTTAGCAAAAGCAAACT+AGG | + | chr2_4:14018789-14018808 | None:intergenic | 25.0% |
| ! | ATGTGTAATTCAGTAAAACA+TGG | + | chr2_4:14018821-14018840 | None:intergenic | 25.0% |
| ! | TGTACATGTTAACTGTTTAT+AGG | - | chr2_4:14019028-14019047 | Msa0316750:CDS | 25.0% |
| ! | ATGTTAACTGTTTATAGGTT+TGG | - | chr2_4:14019033-14019052 | Msa0316750:CDS | 25.0% |
| ! | GCAAGATAATTATGATTCAA+TGG | + | chr2_4:14019094-14019113 | None:intergenic | 25.0% |
| ! | TACCAAATAAATCATGATTC+AGG | + | chr2_4:14019118-14019137 | None:intergenic | 25.0% |
| ! | ATTTACTAAATGATCAATGC+AGG | + | chr2_4:14019305-14019324 | None:intergenic | 25.0% |
| !! | GAAGGAAATCTAAACAATTT+TGG | + | chr2_4:14019363-14019382 | None:intergenic | 25.0% |
| ! | TACAAAAAAATTACCAAACC+AGG | + | chr2_4:14019438-14019457 | None:intergenic | 25.0% |
| !!! | GTTTGGTAATTTTTTTGTAG+AGG | - | chr2_4:14019439-14019458 | Msa0316750:intron | 25.0% |
| ! | TCATCTGAAGAAAATGATAT+TGG | + | chr2_4:14019601-14019620 | None:intergenic | 25.0% |
| ! | ATATAAATGAATGTTGAACC+AGG | + | chr2_4:14019681-14019700 | None:intergenic | 25.0% |
| ! | CCTTGCAATGAAAATAAAAA+TGG | + | chr2_4:14019729-14019748 | None:intergenic | 25.0% |
| !!! | CCATTTTTATTTTCATTGCA+AGG | - | chr2_4:14019726-14019745 | Msa0316750:intron | 25.0% |
| ! | AAAGATAAACAATGTTTAGG+GGG | + | chr2_4:14019831-14019850 | None:intergenic | 25.0% |
| !! | AATCAAAGGGGTTTTTATTA+GGG | + | chr2_4:14019887-14019906 | None:intergenic | 25.0% |
| ! | ACTAAAGTATACAATCAAAG+GGG | + | chr2_4:14019899-14019918 | None:intergenic | 25.0% |
| ! | GACTAAAGTATACAATCAAA+GGG | + | chr2_4:14019900-14019919 | None:intergenic | 25.0% |
| ! | TGACTAAAGTATACAATCAA+AGG | + | chr2_4:14019901-14019920 | None:intergenic | 25.0% |
| ! | ATCGTACAGATTATCTAAAA+GGG | + | chr2_4:14020027-14020046 | None:intergenic | 25.0% |
| ! | AAGAAAAGAAATAGAATACG+AGG | - | chr2_4:14020290-14020309 | Msa0316750:intron | 25.0% |
| ! | GTCAGTAAATAGTTGAAATT+TGG | - | chr2_4:14020352-14020371 | Msa0316750:intron | 25.0% |
| AATGCATCATTTGCTCATTA+TGG | - | chr2_4:14018117-14018136 | Msa0316750:three_prime_UTR | 30.0% | |
| CATTATGGAAGTAAGATCTT+TGG | - | chr2_4:14018132-14018151 | Msa0316750:three_prime_UTR | 30.0% | |
| CTGAAAAGAGACAAATATTG+AGG | - | chr2_4:14018323-14018342 | Msa0316750:CDS | 30.0% | |
| GAAAAGAGACAAATATTGAG+GGG | - | chr2_4:14018325-14018344 | Msa0316750:CDS | 30.0% | |
| TACGTTCAGATTTGTAGTTT+AGG | - | chr2_4:14018362-14018381 | Msa0316750:CDS | 30.0% | |
| TTAGGAAAATAATCACAGAG+TGG | - | chr2_4:14018380-14018399 | Msa0316750:CDS | 30.0% | |
| GTATTTAATAAGCCCAAGAA+TGG | - | chr2_4:14018580-14018599 | Msa0316750:intron | 30.0% | |
| AATACTTACATGCCATTCTT+GGG | + | chr2_4:14018595-14018614 | None:intergenic | 30.0% | |
| TAATACTTACATGCCATTCT+TGG | + | chr2_4:14018596-14018615 | None:intergenic | 30.0% | |
| GACAAATTTATCAAGGAACA+AGG | - | chr2_4:14018954-14018973 | Msa0316750:intron | 30.0% | |
| AAATTTATCAAGGAACAAGG+AGG | - | chr2_4:14018957-14018976 | Msa0316750:intron | 30.0% | |
| CTCCTGAATCATGATTTATT+TGG | - | chr2_4:14019113-14019132 | Msa0316750:intron | 30.0% | |
| ATTTGGTATGAAATCAGTTG+TGG | - | chr2_4:14019130-14019149 | Msa0316750:intron | 30.0% | |
| TTTGGTATGAAATCAGTTGT+GGG | - | chr2_4:14019131-14019150 | Msa0316750:intron | 30.0% | |
| ACAATAAACGATGAATGTGA+AGG | + | chr2_4:14019381-14019400 | None:intergenic | 30.0% | |
| ! | AGGTTAGTTACTTAATCACA+TGG | + | chr2_4:14019418-14019437 | None:intergenic | 30.0% |
| ATGTGATTAAGTAACTAACC+TGG | - | chr2_4:14019417-14019436 | Msa0316750:intron | 30.0% | |
| ATTAAGTAACTAACCTGGTT+TGG | - | chr2_4:14019422-14019441 | Msa0316750:intron | 30.0% | |
| GTTGCTGTGAATTATTATAC+AGG | - | chr2_4:14019488-14019507 | Msa0316750:intron | 30.0% | |
| ! | CAATCAAAGGGGTTTTTATT+AGG | + | chr2_4:14019888-14019907 | None:intergenic | 30.0% |
| TATACTTTAGTCAGAATACC+AGG | - | chr2_4:14019908-14019927 | Msa0316750:intron | 30.0% | |
| CATCGTACAGATTATCTAAA+AGG | + | chr2_4:14020028-14020047 | None:intergenic | 30.0% | |
| TGAACATTGTAAGACAATGA+GGG | - | chr2_4:14020076-14020095 | Msa0316750:intron | 30.0% | |
| AACCAAAACTCTCATACATG+TGG | + | chr2_4:14018045-14018064 | None:intergenic | 35.0% | |
| !! | ACATGTATGAGAGTTTTGGT+TGG | - | chr2_4:14018044-14018063 | Msa0316750:three_prime_UTR | 35.0% |
| ACAAGATACCAGCACATTAA+AGG | + | chr2_4:14018168-14018187 | None:intergenic | 35.0% | |
| ATGCAATAAGTTTGGGTCTA+TGG | - | chr2_4:14018468-14018487 | Msa0316750:CDS | 35.0% | |
| CAATATGTTGAGCAAGAAAC+CGG | + | chr2_4:14018529-14018548 | None:intergenic | 35.0% | |
| TTGGTATGAAATCAGTTGTG+GGG | - | chr2_4:14019132-14019151 | Msa0316750:intron | 35.0% | |
| AGAGGAGTTGAAAAAAATGC+CGG | - | chr2_4:14019457-14019476 | Msa0316750:intron | 35.0% | |
| TAATAATTCACAGCAACCTC+AGG | + | chr2_4:14019485-14019504 | None:intergenic | 35.0% | |
| GCTGTGAATTATTATACAGG+AGG | - | chr2_4:14019491-14019510 | Msa0316750:intron | 35.0% | |
| ! | GGAGGTGACTTGTATTTATT+TGG | - | chr2_4:14019509-14019528 | Msa0316750:intron | 35.0% |
| AGATGAATTTCAAACCTCCA+GGG | - | chr2_4:14019615-14019634 | Msa0316750:intron | 35.0% | |
| TTTCAAGACATACCTATCGT+AGG | + | chr2_4:14019658-14019677 | None:intergenic | 35.0% | |
| TTAGTCAGAATACCAGGATT+AGG | - | chr2_4:14019914-14019933 | Msa0316750:intron | 35.0% | |
| CAGGATTAGGTTAATTGTCT+GGG | - | chr2_4:14019927-14019946 | Msa0316750:CDS | 35.0% | |
| AGGATTAGGTTAATTGTCTG+GGG | - | chr2_4:14019928-14019947 | Msa0316750:CDS | 35.0% | |
| ! | AGGCAATGAAGCATTTGATA+TGG | + | chr2_4:14019955-14019974 | None:intergenic | 35.0% |
| AGCAGTAAAATTTCTCACGT+TGG | - | chr2_4:14019988-14020007 | Msa0316750:CDS | 35.0% | |
| CTGAACATTGTAAGACAATG+AGG | - | chr2_4:14020075-14020094 | Msa0316750:intron | 35.0% | |
| ! | TGTTACTTCTAATCCAGCTA+AGG | - | chr2_4:14020220-14020239 | Msa0316750:intron | 35.0% |
| ATGAGATTCCTCTACAATGA+GGG | - | chr2_4:14020375-14020394 | Msa0316750:intron | 35.0% | |
| ! | CTCCACATGTATGAGAGTTT+TGG | - | chr2_4:14018040-14018059 | Msa0316750:three_prime_UTR | 40.0% |
| !!! | TGTATGAGAGTTTTGGTTGG+TGG | - | chr2_4:14018047-14018066 | Msa0316750:three_prime_UTR | 40.0% |
| ATGCATTTCATTCCAGCTCT+CGG | + | chr2_4:14018104-14018123 | None:intergenic | 40.0% | |
| ! | GACTGCTACTAAGATTTTGC+AGG | + | chr2_4:14018214-14018233 | None:intergenic | 40.0% |
| CAAACTAGGTCAGTTTGTAC+AGG | + | chr2_4:14018775-14018794 | None:intergenic | 40.0% | |
| !! | TCAAGGAACAAGGAGGTATT+TGG | - | chr2_4:14018964-14018983 | Msa0316750:intron | 40.0% |
| !! | CAAGGAACAAGGAGGTATTT+GGG | - | chr2_4:14018965-14018984 | Msa0316750:intron | 40.0% |
| TCTGCCATACTTCAACCTAA+CGG | + | chr2_4:14019160-14019179 | None:intergenic | 40.0% | |
| CTACACGGCTAGAATAATCT+TGG | + | chr2_4:14019195-14019214 | None:intergenic | 40.0% | |
| CAAAAAGCTGAGTCTCTACA+CGG | + | chr2_4:14019210-14019229 | None:intergenic | 40.0% | |
| ! | CTACCTAGATTTTTCACTCG+AGG | - | chr2_4:14019551-14019570 | Msa0316750:CDS | 40.0% |
| TTGCCTCGAGTGAAAAATCT+AGG | + | chr2_4:14019557-14019576 | None:intergenic | 40.0% | |
| TTCACTCGAGGCAAAAAAAC+TGG | - | chr2_4:14019563-14019582 | Msa0316750:CDS | 40.0% | |
| CAGATGAATTTCAAACCTCC+AGG | - | chr2_4:14019614-14019633 | Msa0316750:intron | 40.0% | |
| ATCGTAGGCCTTCTAGTATT+TGG | + | chr2_4:14019643-14019662 | None:intergenic | 40.0% | |
| AATACTAGAAGGCCTACGAT+AGG | - | chr2_4:14019643-14019662 | Msa0316750:intron | 40.0% | |
| GATAGGTATGTCTTGAAACC+TGG | - | chr2_4:14019660-14019679 | Msa0316750:intron | 40.0% | |
| CCAGACAATTAACCTAATCC+TGG | + | chr2_4:14019929-14019948 | None:intergenic | 40.0% | |
| CCAGGATTAGGTTAATTGTC+TGG | - | chr2_4:14019926-14019945 | Msa0316750:CDS | 40.0% | |
| TCTGCATCTGCATATGAATG+AGG | + | chr2_4:14020131-14020150 | None:intergenic | 40.0% | |
| TCATTCATATGCAGATGCAG+AGG | - | chr2_4:14020130-14020149 | Msa0316750:intron | 40.0% | |
| TCAGTCTGTACAATTGAAGC+AGG | - | chr2_4:14020164-14020183 | Msa0316750:intron | 40.0% | |
| ATGTCTTACTTCACCTTAGC+TGG | + | chr2_4:14020236-14020255 | None:intergenic | 40.0% | |
| AGCTAAGGTGAAGTAAGACA+TGG | - | chr2_4:14020235-14020254 | Msa0316750:intron | 40.0% | |
| GATGAGATTCCTCTACAATG+AGG | - | chr2_4:14020374-14020393 | Msa0316750:intron | 40.0% | |
| AAGTTTGGGTCTATGGTTGC+AGG | - | chr2_4:14018475-14018494 | Msa0316750:intron | 45.0% | |
| TATGGTTGCAGGAACTTGGA+GGG | - | chr2_4:14018486-14018505 | Msa0316750:intron | 45.0% | |
| AAATTGAAGAGCCAAGCAGC+AGG | + | chr2_4:14018857-14018876 | None:intergenic | 45.0% | |
| ! | TCTAGTATTTGGAACCCTGG+AGG | + | chr2_4:14019632-14019651 | None:intergenic | 45.0% |
| ! | CCTTCTAGTATTTGGAACCC+TGG | + | chr2_4:14019635-14019654 | None:intergenic | 45.0% |
| CCAGGGTTCCAAATACTAGA+AGG | - | chr2_4:14019632-14019651 | Msa0316750:intron | 45.0% | |
| !! | ATTTTCATTGCAAGGGGTGC+AGG | - | chr2_4:14019734-14019753 | Msa0316750:intron | 45.0% |
| !! | TTTTCATTGCAAGGGGTGCA+GGG | - | chr2_4:14019735-14019754 | Msa0316750:intron | 45.0% |
| ATGAGGGCTTGCCAAACTTA+TGG | - | chr2_4:14020092-14020111 | Msa0316750:intron | 45.0% | |
| TGAGGGCTTGCCAAACTTAT+GGG | - | chr2_4:14020093-14020112 | Msa0316750:intron | 45.0% | |
| ACAATTGAAGCAGGCTGTGA+AGG | - | chr2_4:14020173-14020192 | Msa0316750:intron | 45.0% | |
| CTCATACACCCTCATTGTAG+AGG | + | chr2_4:14020386-14020405 | None:intergenic | 45.0% | |
| !!! | TTTTGGTTGGTGGAGACGAG+CGG | - | chr2_4:14018057-14018076 | Msa0316750:three_prime_UTR | 50.0% |
| ! | AAGTGCATTTTGCCGAGAGC+TGG | - | chr2_4:14018089-14018108 | Msa0316750:three_prime_UTR | 50.0% |
| GGTCTATGGTTGCAGGAACT+TGG | - | chr2_4:14018482-14018501 | Msa0316750:intron | 50.0% | |
| CTATGGTTGCAGGAACTTGG+AGG | - | chr2_4:14018485-14018504 | Msa0316750:intron | 50.0% | |
| AGGAACTTGGAGGGAATGCT+TGG | - | chr2_4:14018495-14018514 | Msa0316750:intron | 50.0% | |
| AACTTGGAGGGAATGCTTGG+TGG | - | chr2_4:14018498-14018517 | Msa0316750:intron | 50.0% | |
| ! | GGAATGCTTGGTGGTTTGAC+CGG | - | chr2_4:14018507-14018526 | Msa0316750:intron | 50.0% |
| ! | AAGCAGCAGGTTGGAATGCT+AGG | + | chr2_4:14018844-14018863 | None:intergenic | 50.0% |
| TAGCATTCCAACCTGCTGCT+TGG | - | chr2_4:14018843-14018862 | Msa0316750:intron | 50.0% | |
| !! | GGAGCCGTTAGGTTGAAGTA+TGG | - | chr2_4:14019153-14019172 | Msa0316750:intron | 50.0% |
| !! | GAAAAAAATGCCGGCTCCTG+AGG | - | chr2_4:14019466-14019485 | Msa0316750:intron | 50.0% |
| GCCAAACTTATGGGAACCTC+CGG | - | chr2_4:14020102-14020121 | Msa0316750:intron | 50.0% | |
| ACCGGAGGTTCCCATAAGTT+TGG | + | chr2_4:14020106-14020125 | None:intergenic | 50.0% | |
| CTGCATATGAATGAGGCGAC+CGG | + | chr2_4:14020124-14020143 | None:intergenic | 50.0% | |
| TGAAGAGCCAAGCAGCAGGT+TGG | + | chr2_4:14018853-14018872 | None:intergenic | 55.0% | |
| ATCAGTTGTGGGGAGCCGTT+AGG | - | chr2_4:14019142-14019161 | Msa0316750:intron | 55.0% | |
| TTCACAGCAACCTCAGGAGC+CGG | + | chr2_4:14019479-14019498 | None:intergenic | 55.0% | |
| CATATGAATGAGGCGACCGG+AGG | + | chr2_4:14020121-14020140 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 14018031 | 14020494 | 14018031 | ID=Msa0316750;Name=Msa0316750 |
| chr2_4 | mRNA | 14018031 | 14020494 | 14018031 | ID=Msa0316750-mRNA-1;Parent=Msa0316750;Name=Msa0316750-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.8|0.66|1|1|1|6|244|208 |
| chr2_4 | exon | 14018031 | 14018492 | 14018031 | ID=Msa0316750-mRNA-1:exon:5345;Parent=Msa0316750-mRNA-1 |
| chr2_4 | exon | 14018861 | 14018908 | 14018861 | ID=Msa0316750-mRNA-1:exon:5344;Parent=Msa0316750-mRNA-1 |
| chr2_4 | exon | 14018995 | 14019066 | 14018995 | ID=Msa0316750-mRNA-1:exon:5343;Parent=Msa0316750-mRNA-1 |
| chr2_4 | exon | 14019547 | 14019615 | 14019547 | ID=Msa0316750-mRNA-1:exon:5342;Parent=Msa0316750-mRNA-1 |
| chr2_4 | exon | 14019920 | 14020028 | 14019920 | ID=Msa0316750-mRNA-1:exon:5341;Parent=Msa0316750-mRNA-1 |
| chr2_4 | exon | 14020384 | 14020494 | 14020384 | ID=Msa0316750-mRNA-1:exon:5340;Parent=Msa0316750-mRNA-1 |
| chr2_4 | CDS | 14020384 | 14020494 | 14020384 | ID=Msa0316750-mRNA-1:cds;Parent=Msa0316750-mRNA-1 |
| chr2_4 | CDS | 14019920 | 14020028 | 14019920 | ID=Msa0316750-mRNA-1:cds;Parent=Msa0316750-mRNA-1 |
| chr2_4 | CDS | 14019547 | 14019615 | 14019547 | ID=Msa0316750-mRNA-1:cds;Parent=Msa0316750-mRNA-1 |
| chr2_4 | CDS | 14018995 | 14019066 | 14018995 | ID=Msa0316750-mRNA-1:cds;Parent=Msa0316750-mRNA-1 |
| chr2_4 | CDS | 14018861 | 14018908 | 14018861 | ID=Msa0316750-mRNA-1:cds;Parent=Msa0316750-mRNA-1 |
| chr2_4 | CDS | 14018275 | 14018492 | 14018275 | ID=Msa0316750-mRNA-1:cds;Parent=Msa0316750-mRNA-1 |
| chr2_4 | three_prime_UTR | 14018031 | 14018274 | 14018031 | ID=Msa0316750-mRNA-1:three_prime_utr;Parent=Msa0316750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
