Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713220 | XP_003611409.1 | 97.417 | 542 | 14 | 0 | 1 | 542 | 1 | 542 | 0.0 | 1110 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713220 | sp|O23553|BAM3_ARATH | 70.236 | 551 | 151 | 7 | 1 | 542 | 1 | 547 | 0.0 | 810 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713220 | G7JYN3 | 97.417 | 542 | 14 | 0 | 1 | 542 | 1 | 542 | 0.0 | 1110 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0096020 | Msa0713220 | 0.836267 | 1.034342e-56 | -8.615850e-47 |
| Msa0610360 | Msa0713220 | 0.801116 | 1.048053e-48 | -8.615850e-47 |
| Msa0614980 | Msa0713220 | 0.842331 | 2.760735e-58 | -8.615850e-47 |
| Msa0621780 | Msa0713220 | 0.849620 | 2.876476e-60 | -8.615850e-47 |
| Msa0629440 | Msa0713220 | -0.829495 | 4.987240e-55 | -8.615850e-47 |
| Msa0650640 | Msa0713220 | 0.812463 | 4.185716e-51 | -8.615850e-47 |
| Msa0650650 | Msa0713220 | 0.828480 | 8.782778e-55 | -8.615850e-47 |
| Msa0650740 | Msa0713220 | 0.828286 | 9.783685e-55 | -8.615850e-47 |
| Msa0650890 | Msa0713220 | 0.803674 | 3.114788e-49 | -8.615850e-47 |
| Msa0667070 | Msa0713220 | -0.821644 | 3.619352e-53 | -8.615850e-47 |
| Msa0713210 | Msa0713220 | 0.932974 | 3.798364e-95 | -8.615850e-47 |
| Msa0713220 | Msa0713230 | 0.931928 | 1.824133e-94 | -8.615850e-47 |
| Msa0713220 | Msa0754350 | 0.869769 | 2.415558e-66 | -8.615850e-47 |
| Msa0713220 | Msa0755080 | 0.858995 | 5.617783e-63 | -8.615850e-47 |
| Msa0713220 | Msa0755090 | 0.890598 | 8.522971e-74 | -8.615850e-47 |
| Msa0713220 | Msa0790640 | 0.840201 | 1.002601e-57 | -8.615850e-47 |
| Msa0713220 | Msa0795710 | 0.850179 | 2.007257e-60 | -8.615850e-47 |
| Msa0713220 | Msa0796950 | 0.874646 | 5.741816e-68 | -8.615850e-47 |
| Msa0713220 | Msa0797000 | 0.891872 | 2.670831e-74 | -8.615850e-47 |
| Msa0713220 | Msa0833450 | 0.821921 | 3.121301e-53 | -8.615850e-47 |
| Msa0713220 | Msa0834450 | 0.865922 | 4.152954e-65 | -8.615850e-47 |
| Msa0713220 | Msa0834460 | 0.892989 | 9.536777e-75 | -8.615850e-47 |
| Msa0713220 | Msa1241820 | 0.804781 | 1.831982e-49 | -8.615850e-47 |
| Msa0713220 | Msa1272950 | 0.816447 | 5.505666e-52 | -8.615850e-47 |
| Msa0713220 | Msa1356180 | 0.825056 | 5.769943e-54 | -8.615850e-47 |
| Msa0713220 | Msa1368980 | 0.804969 | 1.673778e-49 | -8.615850e-47 |
| Msa0713220 | Msa1387520 | 0.822382 | 2.440465e-53 | -8.615850e-47 |
| Msa0713220 | Msa1403950 | 0.840599 | 7.889461e-58 | -8.615850e-47 |
| Msa0713220 | Msa1412620 | -0.816705 | 4.817411e-52 | -8.615850e-47 |
| Msa0154270 | Msa0713220 | 0.806655 | 7.401639e-50 | -8.615850e-47 |
| Msa0197180 | Msa0713220 | 0.814672 | 1.367792e-51 | -8.615850e-47 |
| Msa0376340 | Msa0713220 | 0.817858 | 2.651833e-52 | -8.615850e-47 |
| Msa0388200 | Msa0713220 | 0.822938 | 1.811757e-53 | -8.615850e-47 |
| Msa0424780 | Msa0713220 | 0.823238 | 1.542386e-53 | -8.615850e-47 |
| Msa0433670 | Msa0713220 | 0.801017 | 1.098056e-48 | -8.615850e-47 |
| Msa0453280 | Msa0713220 | 0.817928 | 2.556484e-52 | -8.615850e-47 |
| Msa0477550 | Msa0713220 | 0.802774 | 4.783685e-49 | -8.615850e-47 |
| Msa0238940 | Msa0713220 | 0.826421 | 2.737672e-54 | -8.615850e-47 |
| Msa0316750 | Msa0713220 | 0.836066 | 1.163358e-56 | -8.615850e-47 |
| Msa0341190 | Msa0713220 | 0.800062 | 1.718552e-48 | -8.615850e-47 |
| Msa0501510 | Msa0713220 | 0.853684 | 2.031059e-61 | -8.615850e-47 |
| Msa0516160 | Msa0713220 | 0.816131 | 6.477513e-52 | -8.615850e-47 |
| Msa0521570 | Msa0713220 | 0.822777 | 1.975808e-53 | -8.615850e-47 |
| Msa0530380 | Msa0713220 | 0.803431 | 3.497715e-49 | -8.615850e-47 |
| Msa0555960 | Msa0713220 | 0.800650 | 1.304421e-48 | -8.615850e-47 |
| Msa0579340 | Msa0713220 | 0.832241 | 1.057774e-55 | -8.615850e-47 |
| Msa0579350 | Msa0713220 | 0.815502 | 8.945455e-52 | -8.615850e-47 |
| Msa0579360 | Msa0713220 | 0.816894 | 4.370816e-52 | -8.615850e-47 |
| Msa0580540 | Msa0713220 | 0.853328 | 2.570025e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713220 | MtrunA17_Chr5g0400001 | 97.417 | 542 | 14 | 0 | 1 | 542 | 1 | 542 | 0.0 | 1110 |
| Msa0713220 | MtrunA17_Chr5g0399991 | 92.096 | 544 | 39 | 2 | 1 | 542 | 1 | 542 | 0.0 | 1050 |
| Msa0713220 | MtrunA17_Chr4g0055281 | 75.277 | 542 | 118 | 4 | 1 | 535 | 1 | 533 | 0.0 | 856 |
| Msa0713220 | MtrunA17_Chr6g0481031 | 63.594 | 434 | 146 | 2 | 87 | 508 | 106 | 539 | 0.0 | 613 |
| Msa0713220 | MtrunA17_Chr4g0023601 | 49.885 | 435 | 201 | 4 | 85 | 505 | 11 | 442 | 2.08e-154 | 454 |
| Msa0713220 | MtrunA17_Chr2g0323051 | 50.229 | 436 | 200 | 4 | 84 | 505 | 83 | 515 | 1.91e-149 | 445 |
| Msa0713220 | MtrunA17_Chr8g0388651 | 46.827 | 457 | 224 | 7 | 73 | 512 | 62 | 516 | 1.50e-138 | 415 |
| Msa0713220 | MtrunA17_Chr7g0247631 | 45.815 | 454 | 229 | 6 | 65 | 505 | 243 | 692 | 8.78e-124 | 382 |
| Msa0713220 | MtrunA17_Chr2g0286431 | 39.644 | 449 | 258 | 5 | 74 | 517 | 70 | 510 | 4.63e-107 | 333 |
| Msa0713220 | MtrunA17_Chr5g0408851 | 37.716 | 464 | 269 | 9 | 57 | 508 | 189 | 644 | 3.90e-103 | 327 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713220 | AT4G17090.1 | 70.236 | 551 | 151 | 7 | 1 | 542 | 1 | 547 | 0.0 | 810 |
| Msa0713220 | AT3G23920.1 | 59.592 | 490 | 179 | 4 | 34 | 508 | 56 | 541 | 0.0 | 612 |
| Msa0713220 | AT4G15210.1 | 48.624 | 436 | 206 | 5 | 85 | 505 | 12 | 444 | 1.15e-146 | 435 |
| Msa0713220 | AT4G15210.2 | 51.385 | 397 | 188 | 4 | 78 | 472 | 5 | 398 | 1.63e-144 | 426 |
| Msa0713220 | AT2G32290.1 | 48.506 | 435 | 208 | 5 | 84 | 505 | 75 | 506 | 9.65e-140 | 420 |
| Msa0713220 | AT4G00490.1 | 48.409 | 440 | 210 | 6 | 87 | 513 | 95 | 530 | 4.63e-139 | 417 |
| Msa0713220 | AT4G15210.3 | 49.239 | 394 | 183 | 4 | 126 | 505 | 1 | 391 | 3.00e-136 | 406 |
| Msa0713220 | AT4G15210.4 | 49.239 | 394 | 183 | 4 | 126 | 505 | 1 | 391 | 3.00e-136 | 406 |
| Msa0713220 | AT5G55700.1 | 44.419 | 439 | 225 | 5 | 86 | 506 | 91 | 528 | 8.44e-130 | 392 |
| Msa0713220 | AT2G45880.1 | 44.570 | 442 | 228 | 6 | 74 | 502 | 235 | 672 | 6.51e-122 | 377 |
| Msa0713220 | AT5G45300.1 | 39.593 | 442 | 249 | 8 | 79 | 508 | 247 | 682 | 2.13e-98 | 316 |
| Msa0713220 | AT5G45300.2 | 39.593 | 442 | 249 | 8 | 79 | 508 | 245 | 680 | 2.33e-98 | 316 |
| Msa0713220 | AT5G45300.3 | 39.593 | 442 | 249 | 8 | 79 | 508 | 261 | 696 | 2.63e-98 | 316 |
| Msa0713220 | AT5G55700.2 | 45.566 | 327 | 165 | 3 | 193 | 506 | 39 | 365 | 1.83e-97 | 303 |
| Msa0713220 | AT5G18670.1 | 38.876 | 427 | 243 | 4 | 87 | 506 | 87 | 502 | 7.48e-91 | 292 |
Find 141 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACAGATTTACAGATTATT+TGG | 0.120196 | 5_1:+5352331 | Msa0713220:CDS |
| TTCCAAGTTCCATCAGTTTC+AGG | 0.191128 | 5_1:-5352707 | None:intergenic |
| CTAGTTTACACAGACAAATT+AGG | 0.217572 | 5_1:+5352206 | Msa0713220:CDS |
| CTTTATGTTGGACACATTAA+AGG | 0.225336 | 5_1:+5353608 | Msa0713220:CDS |
| ATGGTCCTATGAAGTATAAT+TGG | 0.246951 | 5_1:+5351847 | Msa0713220:CDS |
| ACAGTATATGAGATCTTCTT+TGG | 0.254734 | 5_1:+5352896 | Msa0713220:intron |
| ACTTGTTTGGAATATGCTTT+TGG | 0.267147 | 5_1:-5353114 | None:intergenic |
| TGGACACATTAAAGGAATTA+AGG | 0.290030 | 5_1:+5353616 | Msa0713220:CDS |
| ACTTGGAAGTTTCCAGGAAT+TGG | 0.297749 | 5_1:+5352722 | Msa0713220:CDS |
| GGTTGATGCTTGGTGGGGTT+TGG | 0.299766 | 5_1:+5351815 | Msa0713220:CDS |
| GGAACATGGAACACAGAATA+TGG | 0.310195 | 5_1:+5353026 | Msa0713220:CDS |
| GGTTGCTTGAGGGTGAAAAT+TGG | 0.313491 | 5_1:+5353504 | Msa0713220:CDS |
| AAAGTTTCACTCCACTTGTT+TGG | 0.314238 | 5_1:-5353127 | None:intergenic |
| AATCAATTTCCTGAGGATAC+TGG | 0.317015 | 5_1:+5352987 | Msa0713220:CDS |
| AATGACTATGCACAGGTTAC+AGG | 0.329845 | 5_1:+5354578 | Msa0713220:CDS |
| CATCCCAATGAGATGTATTC+AGG | 0.331249 | 5_1:-5352239 | None:intergenic |
| CATTGGAATTCTCCAATTCC+TGG | 0.333977 | 5_1:-5352734 | None:intergenic |
| GATGGAACTTGGAAGTTTCC+AGG | 0.338985 | 5_1:+5352716 | Msa0713220:CDS |
| CTTTCAAAATCTGATTCATA+TGG | 0.346178 | 5_1:+5353578 | Msa0713220:CDS |
| GAAGCATCAGCTGCAGCAAT+TGG | 0.348122 | 5_1:+5352918 | Msa0713220:CDS |
| CATGGGTGCTTGAAGAAATA+AGG | 0.352882 | 5_1:+5352171 | Msa0713220:CDS |
| GAAATGTTGGTGACTCTTGC+AGG | 0.358515 | 5_1:+5351952 | Msa0713220:CDS |
| TTTGCTAGCATTTGTGCTAT+TGG | 0.361586 | 5_1:-5353251 | None:intergenic |
| AAAGGAAATGGATTTAGTTC+AGG | 0.362472 | 5_1:+5354723 | Msa0713220:CDS |
| CAGGAAATTCAAGTGGGACT+TGG | 0.366525 | 5_1:+5352653 | Msa0713220:intron |
| TCCTATTCTACAAAAGGAAA+TGG | 0.372095 | 5_1:+5354711 | Msa0713220:CDS |
| CTTATTTAAGAATAAATAAG+AGG | 0.373002 | 5_1:+5353483 | Msa0713220:CDS |
| GGTGAACAATTAGCATGATT+AGG | 0.375380 | 5_1:-5353326 | None:intergenic |
| GACAGATTTACAGATTATTT+GGG | 0.378560 | 5_1:+5352332 | Msa0713220:CDS |
| CCCATTGTTACCGTGTCTAA+TGG | 0.379739 | 5_1:-5351717 | None:intergenic |
| TAGTTTACACAGACAAATTA+GGG | 0.386153 | 5_1:+5352207 | Msa0713220:CDS |
| TTGTCTGTGTAAACTAGCTC+AGG | 0.393606 | 5_1:-5352200 | None:intergenic |
| TTTCAGTTATCCAACCTACT+TGG | 0.394172 | 5_1:+5355186 | Msa0713220:CDS |
| CAGTTAAGGAAAACAAGAAA+TGG | 0.402206 | 5_1:+5351619 | Msa0713220:CDS |
| ATGGAGATTTCTTCCTTGAA+TGG | 0.404338 | 5_1:+5353045 | Msa0713220:CDS |
| GCTTCCCAATTATACTTCAT+AGG | 0.415265 | 5_1:-5351852 | None:intergenic |
| TAGTTCGTCTCGAGTGTTTG+AGG | 0.422253 | 5_1:+5354475 | Msa0713220:CDS |
| CTGAAGAGTGCTGGAGTTGA+AGG | 0.424511 | 5_1:+5351786 | Msa0713220:CDS |
| TGAAAATTGGAGGAAATTTG+TGG | 0.426536 | 5_1:+5353517 | Msa0713220:CDS |
| AGATATGATTCAAATGCTTA+TGG | 0.427696 | 5_1:+5353425 | Msa0713220:CDS |
| AATACCAAGCGGACTATCCT+TGG | 0.434869 | 5_1:-5354453 | None:intergenic |
| TATGGAACTGATCTTTATGT+TGG | 0.435975 | 5_1:+5353596 | Msa0713220:CDS |
| AGCAATGAATGCTAGTTTGA+TGG | 0.437255 | 5_1:+5351761 | Msa0713220:CDS |
| GAATCCTGAATACATCTCAT+TGG | 0.440984 | 5_1:+5352235 | Msa0713220:CDS |
| ACTTGCTGGTGAGAATGCTT+TGG | 0.442476 | 5_1:+5353400 | Msa0713220:CDS |
| AAACACCAACTCTACAGTTA+AGG | 0.445155 | 5_1:+5351605 | Msa0713220:CDS |
| GGAGTTCTTCCTGCTAGAAC+AGG | 0.447514 | 5_1:-5352272 | None:intergenic |
| TCCAAGTTCCATCAGTTTCA+GGG | 0.453104 | 5_1:-5352706 | None:intergenic |
| TTTCACATGCATGGAAATGA+AGG | 0.453930 | 5_1:+5353292 | Msa0713220:CDS |
| ACGGAAGCTTCTCATGTAAT+CGG | 0.454119 | 5_1:-5352309 | None:intergenic |
| GTGTTGCTATGCTCCTCAAC+TGG | 0.457069 | 5_1:-5354527 | None:intergenic |
| TTTGTACCTTGTCATAGCAT+TGG | 0.457100 | 5_1:-5352751 | None:intergenic |
| ACTTGATTAACCAATCCTTC+TGG | 0.458432 | 5_1:-5353347 | None:intergenic |
| AAGATGGCAACAAAGATTGC+AGG | 0.463188 | 5_1:+5353371 | Msa0713220:CDS |
| CCATCAGTTTCAGGGTAAGA+TGG | 0.465255 | 5_1:-5352698 | None:intergenic |
| CTTATTTCTTCAAGCACCCA+TGG | 0.475790 | 5_1:-5352170 | None:intergenic |
| AGTAATGGTTGATGCTTGGT+GGG | 0.476693 | 5_1:+5351809 | Msa0713220:CDS |
| AATCCTGAATACATCTCATT+GGG | 0.477122 | 5_1:+5352236 | Msa0713220:CDS |
| ACCAATGTCGCATTAGTGAT+AGG | 0.477128 | 5_1:-5354503 | None:intergenic |
| TGGTCCTATGAAGTATAATT+GGG | 0.480087 | 5_1:+5351848 | Msa0713220:CDS |
| ATTGCAGGTGGTGAACTTGC+TGG | 0.483856 | 5_1:+5353386 | Msa0713220:CDS |
| TATACTAAATTTCACATGCA+TGG | 0.487819 | 5_1:+5353283 | Msa0713220:CDS |
| GGTGGATCCTATTCTACAAA+AGG | 0.490208 | 5_1:+5354705 | Msa0713220:intron |
| ACCCTGAAACTGATGGAACT+TGG | 0.491404 | 5_1:+5352705 | Msa0713220:CDS |
| ATTGGTTAATCAAGTGAAGA+TGG | 0.500028 | 5_1:+5353355 | Msa0713220:CDS |
| TAATTGTTCACCAGAAGGAT+TGG | 0.500260 | 5_1:+5353337 | Msa0713220:CDS |
| AGTTAAGGAAAACAAGAAAT+GGG | 0.500489 | 5_1:+5351620 | Msa0713220:CDS |
| TCAAGCACCCATGGTGGTAG+AGG | 0.503079 | 5_1:-5352161 | None:intergenic |
| CCATTAGACACGGTAACAAT+GGG | 0.505572 | 5_1:+5351717 | Msa0713220:CDS |
| ATAAATAAGAGGTTGCTTGA+GGG | 0.505894 | 5_1:+5353494 | Msa0713220:CDS |
| GAGTAATGGTTGATGCTTGG+TGG | 0.507394 | 5_1:+5351808 | Msa0713220:CDS |
| TGCTTGAGGGTGAAAATTGG+AGG | 0.514756 | 5_1:+5353507 | Msa0713220:CDS |
| TTCAGTTATCCAACCTACTT+GGG | 0.516346 | 5_1:+5355187 | Msa0713220:CDS |
| CATCAATGTGGTGGAAATGT+TGG | 0.516528 | 5_1:+5351939 | Msa0713220:CDS |
| AATAAATAAGAGGTTGCTTG+AGG | 0.517623 | 5_1:+5353493 | Msa0713220:CDS |
| TTATGCTGAGCTTGTTCAGA+TGG | 0.518500 | 5_1:+5351875 | Msa0713220:CDS |
| GTTTGCTTGAGTACCATTCA+AGG | 0.524728 | 5_1:-5353058 | None:intergenic |
| TTTGTTGTGAGTATGTCTGA+TGG | 0.525311 | 5_1:+5353542 | Msa0713220:CDS |
| GTAATGGTTGATGCTTGGTG+GGG | 0.525670 | 5_1:+5351810 | Msa0713220:CDS |
| ATACCAAGCGGACTATCCTT+GGG | 0.527593 | 5_1:-5354452 | None:intergenic |
| GATTCAGTGCCTGTTCTAGC+AGG | 0.529878 | 5_1:+5352263 | Msa0713220:CDS |
| CATGCAACTGAATTAACTGC+TGG | 0.532417 | 5_1:+5353194 | Msa0713220:CDS |
| AAGCATCAGCTGCAGCAATT+GGG | 0.535892 | 5_1:+5352919 | Msa0713220:CDS |
| CAGAAACATCCCAAGTAGGT+TGG | 0.536314 | 5_1:-5355196 | None:intergenic |
| CCATCTTACCCTGAAACTGA+TGG | 0.538520 | 5_1:+5352698 | Msa0713220:CDS |
| GCCATTAGACACGGTAACAA+TGG | 0.539108 | 5_1:+5351716 | Msa0713220:CDS |
| CAGCAATTGGGAAGAAAGAG+TGG | 0.543241 | 5_1:+5352931 | Msa0713220:CDS |
| TAATCGGAGTAGACTTGAAG+TGG | 0.544728 | 5_1:-5352293 | None:intergenic |
| TGCGACATTGGTACCAGTTG+AGG | 0.545375 | 5_1:+5354514 | Msa0713220:CDS |
| TGCTGGAGTTGAAGGAGTAA+TGG | 0.546595 | 5_1:+5351794 | Msa0713220:CDS |
| GCCTATCACTAATGCGACAT+TGG | 0.546693 | 5_1:+5354502 | Msa0713220:CDS |
| TTGATGGCACTGAAGAGTGC+TGG | 0.558159 | 5_1:+5351777 | Msa0713220:CDS |
| CAGCCCAAGGATAGTCCGCT+TGG | 0.558163 | 5_1:+5354449 | Msa0713220:intron |
| AAAAGCATATTCCAAACAAG+TGG | 0.558992 | 5_1:+5353116 | Msa0713220:CDS |
| TATAACACAAGGTTTCATGA+TGG | 0.559816 | 5_1:+5353221 | Msa0713220:CDS |
| GCCTCAACATGTGTTTCAAG+TGG | 0.563265 | 5_1:-5354551 | None:intergenic |
| TAGCATTCCTCTACCACCAT+GGG | 0.563387 | 5_1:+5352154 | Msa0713220:intron |
| AAGGAGTAATGGTTGATGCT+TGG | 0.565190 | 5_1:+5351805 | Msa0713220:CDS |
| GTTGTGAGTATGTCTGATGG+TGG | 0.571037 | 5_1:+5353545 | Msa0713220:CDS |
| ACACAGACAAATTAGGGAGG+AGG | 0.571216 | 5_1:+5352213 | Msa0713220:CDS |
| CATGCTAATTGTTCACCAGA+AGG | 0.574244 | 5_1:+5353332 | Msa0713220:CDS |
| AAGTGGGACTTGGTCCATGT+GGG | 0.575092 | 5_1:+5352663 | Msa0713220:CDS |
| CTGCTGGTTACTATAACACA+AGG | 0.578850 | 5_1:+5353210 | Msa0713220:CDS |
| CAAGTGGGACTTGGTCCATG+TGG | 0.580992 | 5_1:+5352662 | Msa0713220:CDS |
| GCACAAATGCTAGCAAAACA+TGG | 0.581514 | 5_1:+5353257 | Msa0713220:CDS |
| TTTGCTTTGAGATGAAACAA+AGG | 0.587033 | 5_1:-5351549 | None:intergenic |
| AATAATCTGTAAATCTGTCA+CGG | 0.588821 | 5_1:-5352328 | None:intergenic |
| AAGAAAGAGTGGGGAACAAG+TGG | 0.590788 | 5_1:+5352942 | Msa0713220:CDS |
| TTGTTTGCAGGAAATTCAAG+TGG | 0.593690 | 5_1:+5352646 | Msa0713220:intron |
| TGTCTGTGTAAACTAGCTCA+GGG | 0.595938 | 5_1:-5352199 | None:intergenic |
| GGCGGAGAATGACTATGCAC+AGG | 0.596991 | 5_1:+5354571 | Msa0713220:CDS |
| GGATATCTCAACTCCCCACA+TGG | 0.597220 | 5_1:-5352677 | None:intergenic |
| TGCTGATTCGAATAGAGTAC+CGG | 0.599220 | 5_1:+5351680 | Msa0713220:CDS |
| AGTGGGACTTGGTCCATGTG+GGG | 0.599653 | 5_1:+5352664 | Msa0713220:CDS |
| CGTGTCATTACTGACATGGT+CGG | 0.601806 | 5_1:-5354608 | None:intergenic |
| ACAAGTGGACCACATGACTC+AGG | 0.607814 | 5_1:+5352957 | Msa0713220:CDS |
| AGCAATTGGGAAGAAAGAGT+GGG | 0.613841 | 5_1:+5352932 | Msa0713220:CDS |
| AATGCATAGTGCTTCAGCAG+AGG | 0.616425 | 5_1:+5354753 | Msa0713220:CDS |
| TCAAGCAAACTTGTTGAACA+TGG | 0.618498 | 5_1:+5353071 | Msa0713220:CDS |
| ACCACTTGAAACACATGTTG+AGG | 0.623547 | 5_1:+5354550 | Msa0713220:CDS |
| ATAGCATTCCTCTACCACCA+TGG | 0.632237 | 5_1:+5352153 | Msa0713220:intron |
| TGTTTGCAGGAAATTCAAGT+GGG | 0.637360 | 5_1:+5352647 | Msa0713220:intron |
| GGAGTAGGCGGTAACAGATG+AGG | 0.640491 | 5_1:+5355163 | Msa0713220:intron |
| TTGTATTGACCTGAGTCATG+TGG | 0.648053 | 5_1:-5352966 | None:intergenic |
| TCGTGGTTATGAGCAATCGA+TGG | 0.660833 | 5_1:-5351657 | None:intergenic |
| AATGGCAACATCACAAACAC+CGG | 0.660873 | 5_1:-5351699 | None:intergenic |
| GTCTCAGAAACATCCCAAGT+AGG | 0.661397 | 5_1:-5355200 | None:intergenic |
| TTAGACACGGTAACAATGGG+AGG | 0.667348 | 5_1:+5351720 | Msa0713220:CDS |
| GCAAGAAACACATTTCACAA+AGG | 0.674864 | 5_1:+5351581 | Msa0713220:CDS |
| ATGGCAACAAAGATTGCAGG+TGG | 0.675921 | 5_1:+5353374 | Msa0713220:CDS |
| ACTTGAAACACATGTTGAGG+CGG | 0.677262 | 5_1:+5354553 | Msa0713220:CDS |
| CTCTATTCGAATCAGCATCG+TGG | 0.679739 | 5_1:-5351674 | None:intergenic |
| TCAATACAATCAATTTCCTG+AGG | 0.679778 | 5_1:+5352980 | Msa0713220:CDS |
| AGAATTCCAATGCTATGACA+AGG | 0.689937 | 5_1:+5352745 | Msa0713220:CDS |
| TGTCTGATGGTGGTAAACCA+AGG | 0.696376 | 5_1:+5353555 | Msa0713220:CDS |
| TGTGATGTTGCCATTAGACA+CGG | 0.702107 | 5_1:+5351707 | Msa0713220:CDS |
| GCTGCGTGTCATTACTGACA+TGG | 0.702353 | 5_1:-5354612 | None:intergenic |
| TTTACACAGACAAATTAGGG+AGG | 0.705030 | 5_1:+5352210 | Msa0713220:CDS |
| GCAATTGGGAAGAAAGAGTG+GGG | 0.706843 | 5_1:+5352933 | Msa0713220:CDS |
| ATTTCTTCAAGCACCCATGG+TGG | 0.717661 | 5_1:-5352167 | None:intergenic |
| CGAGACGAACTAATACCAAG+CGG | 0.726809 | 5_1:-5354464 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTCTTAGATTTTTTATTTT+TGG | - | chr5_1:5352111-5352130 | None:intergenic | 15.0% |
| !!! | TAAAAAATCTAAGACTAATT+TGG | + | chr5_1:5352115-5352134 | Msa0713220:intron | 15.0% |
| !! | CTTATTTAAGAATAAATAAG+AGG | + | chr5_1:5353483-5353502 | Msa0713220:CDS | 15.0% |
| !!! | AAGAAGTATATTGATTTATT+AGG | + | chr5_1:5353720-5353739 | Msa0713220:intron | 15.0% |
| !!! | AGAAGTATATTGATTTATTA+GGG | + | chr5_1:5353721-5353740 | Msa0713220:intron | 15.0% |
| !!! | GATTTTTTTTTTTTTTGTCT+TGG | + | chr5_1:5353926-5353945 | Msa0713220:intron | 15.0% |
| !! | AAAACACTAGAATAATTAAA+AGG | - | chr5_1:5353972-5353991 | None:intergenic | 15.0% |
| !! | AAAAGATTCATTCATAATTA+AGG | + | chr5_1:5354011-5354030 | Msa0713220:intron | 15.0% |
| !!! | TTTATTCCTTTTTACTTTTA+AGG | + | chr5_1:5355065-5355084 | Msa0713220:intron | 15.0% |
| !!! | TTATTCCTTTTTACTTTTAA+GGG | + | chr5_1:5355066-5355085 | Msa0713220:intron | 15.0% |
| !!! | CTTTTTCTCATAAATATATA+TGG | + | chr5_1:5355142-5355161 | Msa0713220:intron | 15.0% |
| !!! | TGAAACAAAGGTTTAATTTT+TGG | - | chr5_1:5351540-5351559 | None:intergenic | 20.0% |
| !!! | GTCTAACATTAATATGATTT+TGG | - | chr5_1:5352813-5352832 | None:intergenic | 20.0% |
| !!! | TGTTTGAAAATAAGTCATTT+TGG | - | chr5_1:5352879-5352898 | None:intergenic | 20.0% |
| ! | AATAGAGCAAACACTAAAAA+TGG | + | chr5_1:5351419-5351438 | Msa0713220:exon | 25.0% |
| !!! | TGTTTCTTTTTTGTGAATGA+AGG | - | chr5_1:5351469-5351488 | None:intergenic | 25.0% |
| ! | AGTTAAGGAAAACAAGAAAT+GGG | + | chr5_1:5351620-5351639 | Msa0713220:CDS | 25.0% |
| ! | TAATATTCAACCACCAATTT+AGG | + | chr5_1:5352002-5352021 | Msa0713220:intron | 25.0% |
| ! | GAATGTAACAACTATTAACT+TGG | - | chr5_1:5352037-5352056 | None:intergenic | 25.0% |
| ! | TAGTTTACACAGACAAATTA+GGG | + | chr5_1:5352207-5352226 | Msa0713220:CDS | 25.0% |
| ! | AATAATCTGTAAATCTGTCA+CGG | - | chr5_1:5352331-5352350 | None:intergenic | 25.0% |
| ! | TGACAGATTTACAGATTATT+TGG | + | chr5_1:5352331-5352350 | Msa0713220:CDS | 25.0% |
| ! | GACAGATTTACAGATTATTT+GGG | + | chr5_1:5352332-5352351 | Msa0713220:CDS | 25.0% |
| ! | ATGATGATAAAACTAAGACT+TGG | + | chr5_1:5352592-5352611 | Msa0713220:intron | 25.0% |
| ! | TATACTAAATTTCACATGCA+TGG | + | chr5_1:5353283-5353302 | Msa0713220:CDS | 25.0% |
| ! | AGATATGATTCAAATGCTTA+TGG | + | chr5_1:5353425-5353444 | Msa0713220:CDS | 25.0% |
| ! | CTTTCAAAATCTGATTCATA+TGG | + | chr5_1:5353578-5353597 | Msa0713220:CDS | 25.0% |
| ! | TGAAAGATGAACTCTTTATA+AGG | + | chr5_1:5353874-5353893 | Msa0713220:intron | 25.0% |
| ! | TCAAACAATAGTGGTATATT+GGG | - | chr5_1:5354192-5354211 | None:intergenic | 25.0% |
| ! | ACATATCAAAGTAACGAAAA+TGG | + | chr5_1:5354225-5354244 | Msa0713220:intron | 25.0% |
| !! | AACTAATTTTGTAGACTTGT+AGG | - | chr5_1:5354295-5354314 | None:intergenic | 25.0% |
| !!! | CTTAGTTATTTTGTTCTTCT+AGG | - | chr5_1:5354806-5354825 | None:intergenic | 25.0% |
| ! | CTAGAAGAACAAAATAACTA+AGG | + | chr5_1:5354804-5354823 | Msa0713220:intron | 25.0% |
| ! | ATGAAGATGTTCTCATTTAT+CGG | + | chr5_1:5354873-5354892 | Msa0713220:intron | 25.0% |
| ! | AAGGAAATCTATAATTAGGT+AGG | - | chr5_1:5355016-5355035 | None:intergenic | 25.0% |
| ! | ACCTAATTATAGATTTCCTT+TGG | + | chr5_1:5355016-5355035 | Msa0713220:intron | 25.0% |
| ! | ACCAAAGGAAATCTATAATT+AGG | - | chr5_1:5355020-5355039 | None:intergenic | 25.0% |
| ! | CAAAACCCTTAAAAGTAAAA+AGG | - | chr5_1:5355074-5355093 | None:intergenic | 25.0% |
| !!! | CTTTTTACTTTTAAGGGTTT+TGG | + | chr5_1:5355072-5355091 | Msa0713220:intron | 25.0% |
| ! | CTCATAAATATATATGGAGT+AGG | + | chr5_1:5355148-5355167 | Msa0713220:intron | 25.0% |
| ! | ATAAATATATATGGAGTAGG+CGG | + | chr5_1:5355151-5355170 | Msa0713220:intron | 25.0% |
| ! | TTTTGGACAAGAAACTTTGT+TGG | - | chr5_1:5351523-5351542 | None:intergenic | 30.0% |
| !! | TTTGCTTTGAGATGAAACAA+AGG | - | chr5_1:5351552-5351571 | None:intergenic | 30.0% |
| CAGTTAAGGAAAACAAGAAA+TGG | + | chr5_1:5351619-5351638 | Msa0713220:CDS | 30.0% | |
| ATGGTCCTATGAAGTATAAT+TGG | + | chr5_1:5351847-5351866 | Msa0713220:CDS | 30.0% | |
| TGGTCCTATGAAGTATAATT+GGG | + | chr5_1:5351848-5351867 | Msa0713220:CDS | 30.0% | |
| ! | GTTATGTCTTTTCATCAATG+TGG | + | chr5_1:5351927-5351946 | Msa0713220:CDS | 30.0% |
| CTAGTTTACACAGACAAATT+AGG | + | chr5_1:5352206-5352225 | Msa0713220:CDS | 30.0% | |
| AATCCTGAATACATCTCATT+GGG | + | chr5_1:5352236-5352255 | Msa0713220:CDS | 30.0% | |
| ! | GTATCTAAGACGTTACAATA+AGG | - | chr5_1:5352525-5352544 | None:intergenic | 30.0% |
| ATTAAGACCAAATTGTTTGC+AGG | + | chr5_1:5352634-5352653 | Msa0713220:intron | 30.0% | |
| TGAATTTCCTGCAAACAATT+TGG | - | chr5_1:5352644-5352663 | None:intergenic | 30.0% | |
| ACAGTATATGAGATCTTCTT+TGG | + | chr5_1:5352896-5352915 | Msa0713220:intron | 30.0% | |
| TCAATACAATCAATTTCCTG+AGG | + | chr5_1:5352980-5352999 | Msa0713220:CDS | 30.0% | |
| !! | AGGATACTGGATTTTTCAAA+AGG | + | chr5_1:5353000-5353019 | Msa0713220:CDS | 30.0% |
| !! | GGATACTGGATTTTTCAAAA+GGG | + | chr5_1:5353001-5353020 | Msa0713220:CDS | 30.0% |
| !! | ACTTGTTTGGAATATGCTTT+TGG | - | chr5_1:5353117-5353136 | None:intergenic | 30.0% |
| ! | AAAAGCATATTCCAAACAAG+TGG | + | chr5_1:5353116-5353135 | Msa0713220:CDS | 30.0% |
| AAACTTTCAGCAAAAATAGC+TGG | + | chr5_1:5353143-5353162 | Msa0713220:CDS | 30.0% | |
| CAAAAATAGCTGGAATTCAT+TGG | + | chr5_1:5353153-5353172 | Msa0713220:CDS | 30.0% | |
| TATAACACAAGGTTTCATGA+TGG | + | chr5_1:5353221-5353240 | Msa0713220:CDS | 30.0% | |
| ATTGGTTAATCAAGTGAAGA+TGG | + | chr5_1:5353355-5353374 | Msa0713220:CDS | 30.0% | |
| AATAAATAAGAGGTTGCTTG+AGG | + | chr5_1:5353493-5353512 | Msa0713220:CDS | 30.0% | |
| ATAAATAAGAGGTTGCTTGA+GGG | + | chr5_1:5353494-5353513 | Msa0713220:CDS | 30.0% | |
| TGAAAATTGGAGGAAATTTG+TGG | + | chr5_1:5353517-5353536 | Msa0713220:CDS | 30.0% | |
| TATGGAACTGATCTTTATGT+TGG | + | chr5_1:5353596-5353615 | Msa0713220:CDS | 30.0% | |
| CTTTATGTTGGACACATTAA+AGG | + | chr5_1:5353608-5353627 | Msa0713220:CDS | 30.0% | |
| TGGACACATTAAAGGAATTA+AGG | + | chr5_1:5353616-5353635 | Msa0713220:CDS | 30.0% | |
| CACATATTTCATCATGTTGA+TGG | + | chr5_1:5353682-5353701 | Msa0713220:intron | 30.0% | |
| CTCAAACAATAGTGGTATAT+TGG | - | chr5_1:5354193-5354212 | None:intergenic | 30.0% | |
| CAATATACCACTATTGTTTG+AGG | + | chr5_1:5354191-5354210 | Msa0713220:intron | 30.0% | |
| ATCAAAGTAACGAAAATGGA+TGG | + | chr5_1:5354229-5354248 | Msa0713220:intron | 30.0% | |
| TCATTCGTATAAGGACAAAA+TGG | + | chr5_1:5354352-5354371 | Msa0713220:intron | 30.0% | |
| TAACAAAGGTAAGAGAAAAG+AGG | + | chr5_1:5354397-5354416 | Msa0713220:intron | 30.0% | |
| !!! | TATTGCATATGTTGCTTTTG+AGG | - | chr5_1:5354425-5354444 | None:intergenic | 30.0% |
| AAAAGCAACATATGCAATAG+TGG | + | chr5_1:5354426-5354445 | Msa0713220:intron | 30.0% | |
| CTGTTACTAAAGAGAGAATT+GGG | - | chr5_1:5354639-5354658 | None:intergenic | 30.0% | |
| TCTGTTACTAAAGAGAGAAT+TGG | - | chr5_1:5354640-5354659 | None:intergenic | 30.0% | |
| TTTAGTAACAGAGATTGTGT+CGG | + | chr5_1:5354648-5354667 | Msa0713220:intron | 30.0% | |
| TCCTATTCTACAAAAGGAAA+TGG | + | chr5_1:5354711-5354730 | Msa0713220:CDS | 30.0% | |
| ! | TCCATTTCCTTTTGTAGAAT+AGG | - | chr5_1:5354715-5354734 | None:intergenic | 30.0% |
| ! | AAAGGAAATGGATTTAGTTC+AGG | + | chr5_1:5354723-5354742 | Msa0713220:CDS | 30.0% |
| TTCGACAAATAAAGTGTGAA+AGG | - | chr5_1:5354781-5354800 | None:intergenic | 30.0% | |
| TGAAGATGTTCTCATTTATC+GGG | + | chr5_1:5354874-5354893 | Msa0713220:intron | 30.0% | |
| GCAAGAAACACATTTCACAA+AGG | + | chr5_1:5351581-5351600 | Msa0713220:CDS | 35.0% | |
| AAACACCAACTCTACAGTTA+AGG | + | chr5_1:5351605-5351624 | Msa0713220:CDS | 35.0% | |
| ! | GTTTTCCTTAACTGTAGAGT+TGG | - | chr5_1:5351613-5351632 | None:intergenic | 35.0% |
| ! | AGCAATGAATGCTAGTTTGA+TGG | + | chr5_1:5351761-5351780 | Msa0713220:CDS | 35.0% |
| GCTTCCCAATTATACTTCAT+AGG | - | chr5_1:5351855-5351874 | None:intergenic | 35.0% | |
| GTTCAGATGGTACAAAAACA+TGG | + | chr5_1:5351888-5351907 | Msa0713220:CDS | 35.0% | |
| ! | ATGTCTTTTCATCAATGTGG+TGG | + | chr5_1:5351930-5351949 | Msa0713220:CDS | 35.0% |
| TTGGCAAATAGAGCCTAAAT+TGG | - | chr5_1:5352018-5352037 | None:intergenic | 35.0% | |
| TTTACACAGACAAATTAGGG+AGG | + | chr5_1:5352210-5352229 | Msa0713220:CDS | 35.0% | |
| GAATCCTGAATACATCTCAT+TGG | + | chr5_1:5352235-5352254 | Msa0713220:CDS | 35.0% | |
| !!! | CTTCAGTTTTGAGGTTAGAT+GGG | + | chr5_1:5352392-5352411 | Msa0713220:intron | 35.0% |
| AGATGGGTGATTAAGATACT+TGG | + | chr5_1:5352408-5352427 | Msa0713220:intron | 35.0% | |
| TTGTTTGCAGGAAATTCAAG+TGG | + | chr5_1:5352646-5352665 | Msa0713220:intron | 35.0% | |
| TGTTTGCAGGAAATTCAAGT+GGG | + | chr5_1:5352647-5352666 | Msa0713220:intron | 35.0% | |
| AGAATTCCAATGCTATGACA+AGG | + | chr5_1:5352745-5352764 | Msa0713220:CDS | 35.0% | |
| TTTGTACCTTGTCATAGCAT+TGG | - | chr5_1:5352754-5352773 | None:intergenic | 35.0% | |
| AATCAATTTCCTGAGGATAC+TGG | + | chr5_1:5352987-5353006 | Msa0713220:CDS | 35.0% | |
| TTGAAAAATCCAGTATCCTC+AGG | - | chr5_1:5352999-5353018 | None:intergenic | 35.0% | |
| !! | ACTGGATTTTTCAAAAGGGA+AGG | + | chr5_1:5353005-5353024 | Msa0713220:CDS | 35.0% |
| ! | TTTTCAAAAGGGAAGGAACA+TGG | + | chr5_1:5353012-5353031 | Msa0713220:CDS | 35.0% |
| ATGGAGATTTCTTCCTTGAA+TGG | + | chr5_1:5353045-5353064 | Msa0713220:CDS | 35.0% | |
| !! | TCAAGCAAACTTGTTGAACA+TGG | + | chr5_1:5353071-5353090 | Msa0713220:CDS | 35.0% |
| AAAGTTTCACTCCACTTGTT+TGG | - | chr5_1:5353130-5353149 | None:intergenic | 35.0% | |
| TTTGCTAGCATTTGTGCTAT+TGG | - | chr5_1:5353254-5353273 | None:intergenic | 35.0% | |
| TTTCACATGCATGGAAATGA+AGG | + | chr5_1:5353292-5353311 | Msa0713220:CDS | 35.0% | |
| GGTGAACAATTAGCATGATT+AGG | - | chr5_1:5353329-5353348 | None:intergenic | 35.0% | |
| TAATTGTTCACCAGAAGGAT+TGG | + | chr5_1:5353337-5353356 | Msa0713220:CDS | 35.0% | |
| ACTTGATTAACCAATCCTTC+TGG | - | chr5_1:5353350-5353369 | None:intergenic | 35.0% | |
| ! | TTTGTTGTGAGTATGTCTGA+TGG | + | chr5_1:5353542-5353561 | Msa0713220:CDS | 35.0% |
| !! | GAATCAGATTTTGAAAGCCT+TGG | - | chr5_1:5353575-5353594 | None:intergenic | 35.0% |
| ! | ATGTTGATGGATCATGTGTA+TGG | + | chr5_1:5353695-5353714 | Msa0713220:intron | 35.0% |
| ! | AAGGTTTTCATTTGAGTGCA+TGG | + | chr5_1:5353893-5353912 | Msa0713220:intron | 35.0% |
| !! | ATAATCATTTTGATGCCTCG+TGG | + | chr5_1:5354115-5354134 | Msa0713220:intron | 35.0% |
| !! | TAATCATTTTGATGCCTCGT+GGG | + | chr5_1:5354116-5354135 | Msa0713220:intron | 35.0% |
| TGACAATCCTCAAACAATAG+TGG | - | chr5_1:5354201-5354220 | None:intergenic | 35.0% | |
| TCCATGGATTCATTCGTATA+AGG | + | chr5_1:5354343-5354362 | Msa0713220:intron | 35.0% | |
| TCCTTATACGAATGAATCCA+TGG | - | chr5_1:5354347-5354366 | None:intergenic | 35.0% | |
| TTCGTATAAGGACAAAATGG+TGG | + | chr5_1:5354355-5354374 | Msa0713220:intron | 35.0% | |
| CCTTTGTTAACAACCTGAAT+AGG | - | chr5_1:5354386-5354405 | None:intergenic | 35.0% | |
| !! | CCTATTCAGGTTGTTAACAA+AGG | + | chr5_1:5354383-5354402 | Msa0713220:intron | 35.0% |
| GTCGGATGTTCGTAATATTA+TGG | + | chr5_1:5354666-5354685 | Msa0713220:intron | 35.0% | |
| AGAACATCTTCATTGAGAGA+AGG | - | chr5_1:5354866-5354885 | None:intergenic | 35.0% | |
| ATGTTCTCATTTATCGGGAT+GGG | + | chr5_1:5354879-5354898 | Msa0713220:intron | 35.0% | |
| CGTGATAGAAAAACAACCAA+AGG | - | chr5_1:5355035-5355054 | None:intergenic | 35.0% | |
| TTTCAGTTATCCAACCTACT+TGG | + | chr5_1:5355186-5355205 | Msa0713220:CDS | 35.0% | |
| TTCAGTTATCCAACCTACTT+GGG | + | chr5_1:5355187-5355206 | Msa0713220:CDS | 35.0% | |
| !! | TGCTGATTCGAATAGAGTAC+CGG | + | chr5_1:5351680-5351699 | Msa0713220:CDS | 40.0% |
| AATGGCAACATCACAAACAC+CGG | - | chr5_1:5351702-5351721 | None:intergenic | 40.0% | |
| TGTGATGTTGCCATTAGACA+CGG | + | chr5_1:5351707-5351726 | Msa0713220:CDS | 40.0% | |
| CCATTAGACACGGTAACAAT+GGG | + | chr5_1:5351717-5351736 | Msa0713220:CDS | 40.0% | |
| ! | AAGGAGTAATGGTTGATGCT+TGG | + | chr5_1:5351805-5351824 | Msa0713220:CDS | 40.0% |
| ! | AGTAATGGTTGATGCTTGGT+GGG | + | chr5_1:5351809-5351828 | Msa0713220:CDS | 40.0% |
| ! | TGGGGTTTGGTTGAAAAAGA+TGG | + | chr5_1:5351828-5351847 | Msa0713220:CDS | 40.0% |
| ! | TTATGCTGAGCTTGTTCAGA+TGG | + | chr5_1:5351875-5351894 | Msa0713220:CDS | 40.0% |
| ! | CATCAATGTGGTGGAAATGT+TGG | + | chr5_1:5351939-5351958 | Msa0713220:CDS | 40.0% |
| GCAAATAGAGCCTAAATTGG+TGG | - | chr5_1:5352015-5352034 | None:intergenic | 40.0% | |
| ! | CTTATTTCTTCAAGCACCCA+TGG | - | chr5_1:5352173-5352192 | None:intergenic | 40.0% |
| CATGGGTGCTTGAAGAAATA+AGG | + | chr5_1:5352171-5352190 | Msa0713220:CDS | 40.0% | |
| TGTCTGTGTAAACTAGCTCA+GGG | - | chr5_1:5352202-5352221 | None:intergenic | 40.0% | |
| TTGTCTGTGTAAACTAGCTC+AGG | - | chr5_1:5352203-5352222 | None:intergenic | 40.0% | |
| CATCCCAATGAGATGTATTC+AGG | - | chr5_1:5352242-5352261 | None:intergenic | 40.0% | |
| TAATCGGAGTAGACTTGAAG+TGG | - | chr5_1:5352296-5352315 | None:intergenic | 40.0% | |
| ACGGAAGCTTCTCATGTAAT+CGG | - | chr5_1:5352312-5352331 | None:intergenic | 40.0% | |
| ! | CAACTTGTGCTTCAGTTTTG+AGG | + | chr5_1:5352383-5352402 | Msa0713220:intron | 40.0% |
| !!! | GCTTCAGTTTTGAGGTTAGA+TGG | + | chr5_1:5352391-5352410 | Msa0713220:intron | 40.0% |
| TCCAAGTTCCATCAGTTTCA+GGG | - | chr5_1:5352709-5352728 | None:intergenic | 40.0% | |
| TTCCAAGTTCCATCAGTTTC+AGG | - | chr5_1:5352710-5352729 | None:intergenic | 40.0% | |
| ACTTGGAAGTTTCCAGGAAT+TGG | + | chr5_1:5352722-5352741 | Msa0713220:CDS | 40.0% | |
| CATTGGAATTCTCCAATTCC+TGG | - | chr5_1:5352737-5352756 | None:intergenic | 40.0% | |
| AGCAATTGGGAAGAAAGAGT+GGG | + | chr5_1:5352932-5352951 | Msa0713220:CDS | 40.0% | |
| ! | TTGTATTGACCTGAGTCATG+TGG | - | chr5_1:5352969-5352988 | None:intergenic | 40.0% |
| GGAACATGGAACACAGAATA+TGG | + | chr5_1:5353026-5353045 | Msa0713220:CDS | 40.0% | |
| GTTTGCTTGAGTACCATTCA+AGG | - | chr5_1:5353061-5353080 | None:intergenic | 40.0% | |
| CATGCAACTGAATTAACTGC+TGG | + | chr5_1:5353194-5353213 | Msa0713220:CDS | 40.0% | |
| ! | CTGCTGGTTACTATAACACA+AGG | + | chr5_1:5353210-5353229 | Msa0713220:CDS | 40.0% |
| GCACAAATGCTAGCAAAACA+TGG | + | chr5_1:5353257-5353276 | Msa0713220:CDS | 40.0% | |
| CATGCTAATTGTTCACCAGA+AGG | + | chr5_1:5353332-5353351 | Msa0713220:CDS | 40.0% | |
| AAGATGGCAACAAAGATTGC+AGG | + | chr5_1:5353371-5353390 | Msa0713220:CDS | 40.0% | |
| !! | GGTCAAGTTTTGTCAACAAG+TGG | + | chr5_1:5353446-5353465 | Msa0713220:CDS | 40.0% |
| ! | CTTGGTGTGCGTAGATAATT+TGG | + | chr5_1:5353811-5353830 | Msa0713220:intron | 40.0% |
| GTGTGCGTAGATAATTTGGT+GGG | + | chr5_1:5353815-5353834 | Msa0713220:intron | 40.0% | |
| CACTTATTGCCAATTGTCCA+TGG | + | chr5_1:5354327-5354346 | Msa0713220:intron | 40.0% | |
| CGAATGAATCCATGGACAAT+TGG | - | chr5_1:5354339-5354358 | None:intergenic | 40.0% | |
| ! | AATGGTGGAACAACCTATTC+AGG | + | chr5_1:5354370-5354389 | Msa0713220:intron | 40.0% |
| ACCAATGTCGCATTAGTGAT+AGG | - | chr5_1:5354506-5354525 | None:intergenic | 40.0% | |
| ACCACTTGAAACACATGTTG+AGG | + | chr5_1:5354550-5354569 | Msa0713220:CDS | 40.0% | |
| ACTTGAAACACATGTTGAGG+CGG | + | chr5_1:5354553-5354572 | Msa0713220:CDS | 40.0% | |
| AATGACTATGCACAGGTTAC+AGG | + | chr5_1:5354578-5354597 | Msa0713220:CDS | 40.0% | |
| TTTGTAGAATAGGATCCACC+TGG | - | chr5_1:5354705-5354724 | None:intergenic | 40.0% | |
| GGTGGATCCTATTCTACAAA+AGG | + | chr5_1:5354705-5354724 | Msa0713220:intron | 40.0% | |
| CTTCATTGAGAGAAGGAAGA+AGG | - | chr5_1:5354859-5354878 | None:intergenic | 40.0% | |
| GATGTTCTCATTTATCGGGA+TGG | + | chr5_1:5354878-5354897 | Msa0713220:intron | 40.0% | |
| GTGGATAAGTTAGCGAATCT+TGG | + | chr5_1:5354911-5354930 | Msa0713220:intron | 40.0% | |
| !! | TTTGTTGGCGGGTTTCTTTA+GGG | + | chr5_1:5354980-5354999 | Msa0713220:intron | 40.0% |
| TCGTGGTTATGAGCAATCGA+TGG | - | chr5_1:5351660-5351679 | None:intergenic | 45.0% | |
| CTCTATTCGAATCAGCATCG+TGG | - | chr5_1:5351677-5351696 | None:intergenic | 45.0% | |
| GCCATTAGACACGGTAACAA+TGG | + | chr5_1:5351716-5351735 | Msa0713220:CDS | 45.0% | |
| CCCATTGTTACCGTGTCTAA+TGG | - | chr5_1:5351720-5351739 | None:intergenic | 45.0% | |
| TTAGACACGGTAACAATGGG+AGG | + | chr5_1:5351720-5351739 | Msa0713220:CDS | 45.0% | |
| TGCTGGAGTTGAAGGAGTAA+TGG | + | chr5_1:5351794-5351813 | Msa0713220:CDS | 45.0% | |
| ! | GAGTAATGGTTGATGCTTGG+TGG | + | chr5_1:5351808-5351827 | Msa0713220:CDS | 45.0% |
| ! | GTAATGGTTGATGCTTGGTG+GGG | + | chr5_1:5351810-5351829 | Msa0713220:CDS | 45.0% |
| !! | GAAATGTTGGTGACTCTTGC+AGG | + | chr5_1:5351952-5351971 | Msa0713220:CDS | 45.0% |
| ATAGCATTCCTCTACCACCA+TGG | + | chr5_1:5352153-5352172 | Msa0713220:intron | 45.0% | |
| TAGCATTCCTCTACCACCAT+GGG | + | chr5_1:5352154-5352173 | Msa0713220:intron | 45.0% | |
| ATTTCTTCAAGCACCCATGG+TGG | - | chr5_1:5352170-5352189 | None:intergenic | 45.0% | |
| ACACAGACAAATTAGGGAGG+AGG | + | chr5_1:5352213-5352232 | Msa0713220:CDS | 45.0% | |
| CAGGAAATTCAAGTGGGACT+TGG | + | chr5_1:5352653-5352672 | Msa0713220:intron | 45.0% | |
| CCATCAGTTTCAGGGTAAGA+TGG | - | chr5_1:5352701-5352720 | None:intergenic | 45.0% | |
| CCATCTTACCCTGAAACTGA+TGG | + | chr5_1:5352698-5352717 | Msa0713220:CDS | 45.0% | |
| ACCCTGAAACTGATGGAACT+TGG | + | chr5_1:5352705-5352724 | Msa0713220:CDS | 45.0% | |
| GATGGAACTTGGAAGTTTCC+AGG | + | chr5_1:5352716-5352735 | Msa0713220:CDS | 45.0% | |
| AAGCATCAGCTGCAGCAATT+GGG | + | chr5_1:5352919-5352938 | Msa0713220:CDS | 45.0% | |
| CAGCAATTGGGAAGAAAGAG+TGG | + | chr5_1:5352931-5352950 | Msa0713220:CDS | 45.0% | |
| GCAATTGGGAAGAAAGAGTG+GGG | + | chr5_1:5352933-5352952 | Msa0713220:CDS | 45.0% | |
| AAGAAAGAGTGGGGAACAAG+TGG | + | chr5_1:5352942-5352961 | Msa0713220:CDS | 45.0% | |
| ATGGCAACAAAGATTGCAGG+TGG | + | chr5_1:5353374-5353393 | Msa0713220:CDS | 45.0% | |
| ! | ACTTGCTGGTGAGAATGCTT+TGG | + | chr5_1:5353400-5353419 | Msa0713220:CDS | 45.0% |
| GGTTGCTTGAGGGTGAAAAT+TGG | + | chr5_1:5353504-5353523 | Msa0713220:CDS | 45.0% | |
| TGCTTGAGGGTGAAAATTGG+AGG | + | chr5_1:5353507-5353526 | Msa0713220:CDS | 45.0% | |
| GTTGTGAGTATGTCTGATGG+TGG | + | chr5_1:5353545-5353564 | Msa0713220:CDS | 45.0% | |
| !! | TGTCTGATGGTGGTAAACCA+AGG | + | chr5_1:5353555-5353574 | Msa0713220:CDS | 45.0% |
| ACCACCAACGTTATTGAGCT+TGG | + | chr5_1:5353793-5353812 | Msa0713220:intron | 45.0% | |
| ACCAAGCTCAATAACGTTGG+TGG | - | chr5_1:5353797-5353816 | None:intergenic | 45.0% | |
| CACACCAAGCTCAATAACGT+TGG | - | chr5_1:5353800-5353819 | None:intergenic | 45.0% | |
| GGTGTGCGTAGATAATTTGG+TGG | + | chr5_1:5353814-5353833 | Msa0713220:intron | 45.0% | |
| GGGTAAACATGTGTGACATG+TGG | - | chr5_1:5354172-5354191 | None:intergenic | 45.0% | |
| GGCAATAAGTGCAAGTGATG+TGG | - | chr5_1:5354318-5354337 | None:intergenic | 45.0% | |
| !! | ATACCAAGCGGACTATCCTT+GGG | - | chr5_1:5354455-5354474 | None:intergenic | 45.0% |
| !! | AATACCAAGCGGACTATCCT+TGG | - | chr5_1:5354456-5354475 | None:intergenic | 45.0% |
| CGAGACGAACTAATACCAAG+CGG | - | chr5_1:5354467-5354486 | None:intergenic | 45.0% | |
| TAGTTCGTCTCGAGTGTTTG+AGG | + | chr5_1:5354475-5354494 | Msa0713220:CDS | 45.0% | |
| GCCTATCACTAATGCGACAT+TGG | + | chr5_1:5354502-5354521 | Msa0713220:CDS | 45.0% | |
| GCCTCAACATGTGTTTCAAG+TGG | - | chr5_1:5354554-5354573 | None:intergenic | 45.0% | |
| ! | CGTGTCATTACTGACATGGT+CGG | - | chr5_1:5354611-5354630 | None:intergenic | 45.0% |
| TATGGTTGTTCCTGATGACC+AGG | + | chr5_1:5354684-5354703 | Msa0713220:intron | 45.0% | |
| AATGCATAGTGCTTCAGCAG+AGG | + | chr5_1:5354753-5354772 | Msa0713220:CDS | 45.0% | |
| TGCCTACCAAACTCGTTCTA+AGG | + | chr5_1:5354828-5354847 | Msa0713220:intron | 45.0% | |
| GCCTACCAAACTCGTTCTAA+GGG | + | chr5_1:5354829-5354848 | Msa0713220:intron | 45.0% | |
| ACCCTTAGAACGAGTTTGGT+AGG | - | chr5_1:5354833-5354852 | None:intergenic | 45.0% | |
| GAAGACCCTTAGAACGAGTT+TGG | - | chr5_1:5354837-5354856 | None:intergenic | 45.0% | |
| CTAAAGAAACCCGCCAACAA+AGG | - | chr5_1:5354981-5355000 | None:intergenic | 45.0% | |
| !! | CTTTGTTGGCGGGTTTCTTT+AGG | + | chr5_1:5354979-5354998 | Msa0713220:intron | 45.0% |
| ACACACACACACACACAAGA+GGG | - | chr5_1:5355107-5355126 | None:intergenic | 45.0% | |
| CAGAAACATCCCAAGTAGGT+TGG | - | chr5_1:5355199-5355218 | None:intergenic | 45.0% | |
| GTCTCAGAAACATCCCAAGT+AGG | - | chr5_1:5355203-5355222 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTTATATATTTGT+TGG | + | chr5_1:5353750-5353769 | Msa0713220:intron | 5.0% |
| ! | TTGATGGCACTGAAGAGTGC+TGG | + | chr5_1:5351777-5351796 | Msa0713220:CDS | 50.0% |
| !! | CTGAAGAGTGCTGGAGTTGA+AGG | + | chr5_1:5351786-5351805 | Msa0713220:CDS | 50.0% |
| !! | GTTGGTGACTCTTGCAGGTA+TGG | + | chr5_1:5351957-5351976 | Msa0713220:intron | 50.0% |
| GATTCAGTGCCTGTTCTAGC+AGG | + | chr5_1:5352263-5352282 | Msa0713220:CDS | 50.0% | |
| GGAGTTCTTCCTGCTAGAAC+AGG | - | chr5_1:5352275-5352294 | None:intergenic | 50.0% | |
| ! | AAGTGGGACTTGGTCCATGT+GGG | + | chr5_1:5352663-5352682 | Msa0713220:CDS | 50.0% |
| GGATATCTCAACTCCCCACA+TGG | - | chr5_1:5352680-5352699 | None:intergenic | 50.0% | |
| ! | GAAGCATCAGCTGCAGCAAT+TGG | + | chr5_1:5352918-5352937 | Msa0713220:CDS | 50.0% |
| ACAAGTGGACCACATGACTC+AGG | + | chr5_1:5352957-5352976 | Msa0713220:CDS | 50.0% | |
| ATTGCAGGTGGTGAACTTGC+TGG | + | chr5_1:5353386-5353405 | Msa0713220:CDS | 50.0% | |
| !! | TCATTTTGATGCCTCGTGGG+TGG | + | chr5_1:5354119-5354138 | Msa0713220:intron | 50.0% |
| !! | ACTGTGAGCATCGACAAGAG+GGG | - | chr5_1:5354148-5354167 | None:intergenic | 50.0% |
| !! | CACTGTGAGCATCGACAAGA+GGG | - | chr5_1:5354149-5354168 | None:intergenic | 50.0% |
| TATGCAATAGTGGCAGCCCA+AGG | + | chr5_1:5354436-5354455 | Msa0713220:intron | 50.0% | |
| TGCGACATTGGTACCAGTTG+AGG | + | chr5_1:5354514-5354533 | Msa0713220:CDS | 50.0% | |
| ! | GTGTTGCTATGCTCCTCAAC+TGG | - | chr5_1:5354530-5354549 | None:intergenic | 50.0% |
| ! | GCTGCGTGTCATTACTGACA+TGG | - | chr5_1:5354615-5354634 | None:intergenic | 50.0% |
| ATAGGATCCACCTGGTCATC+AGG | - | chr5_1:5354697-5354716 | None:intergenic | 50.0% | |
| TCGGGATGGGAATTGTTGTG+TGG | + | chr5_1:5354892-5354911 | Msa0713220:intron | 50.0% | |
| ! | AAGTAACACCAGAGAGCGCA+TGG | - | chr5_1:5354937-5354956 | None:intergenic | 50.0% |
| !! | TGGCGGGTTTCTTTAGGGAT+AGG | + | chr5_1:5354985-5355004 | Msa0713220:intron | 50.0% |
| CACACACACACACACAAGAG+GGG | - | chr5_1:5355106-5355125 | None:intergenic | 50.0% | |
| CACACACACACACACACAAG+AGG | - | chr5_1:5355108-5355127 | None:intergenic | 50.0% | |
| ! | GGTTGATGCTTGGTGGGGTT+TGG | + | chr5_1:5351815-5351834 | Msa0713220:CDS | 55.0% |
| TCAAGCACCCATGGTGGTAG+AGG | - | chr5_1:5352164-5352183 | None:intergenic | 55.0% | |
| ! | CAAGTGGGACTTGGTCCATG+TGG | + | chr5_1:5352662-5352681 | Msa0713220:CDS | 55.0% |
| ! | AGTGGGACTTGGTCCATGTG+GGG | + | chr5_1:5352664-5352683 | Msa0713220:CDS | 55.0% |
| !! | GCACTGTGAGCATCGACAAG+AGG | - | chr5_1:5354150-5354169 | None:intergenic | 55.0% |
| GGCGGAGAATGACTATGCAC+AGG | + | chr5_1:5354571-5354590 | Msa0713220:CDS | 55.0% | |
| GGTTGTTCCTGATGACCAGG+TGG | + | chr5_1:5354687-5354706 | Msa0713220:intron | 55.0% | |
| AATCTTGGCCATGCGCTCTC+TGG | + | chr5_1:5354926-5354945 | Msa0713220:intron | 55.0% | |
| AAACCCGCCAACAAAGGCGA+CGG | - | chr5_1:5354975-5354994 | None:intergenic | 55.0% | |
| GGAGTAGGCGGTAACAGATG+AGG | + | chr5_1:5355163-5355182 | Msa0713220:intron | 55.0% | |
| CAGCCCAAGGATAGTCCGCT+TGG | + | chr5_1:5354449-5354468 | Msa0713220:intron | 60.0% | |
| GACCACGCCGTCGCCTTTGT+TGG | + | chr5_1:5354965-5354984 | Msa0713220:intron | 65.0% | |
| CACGCCGTCGCCTTTGTTGG+CGG | + | chr5_1:5354968-5354987 | Msa0713220:intron | 65.0% | |
| ACGCCGTCGCCTTTGTTGGC+GGG | + | chr5_1:5354969-5354988 | Msa0713220:intron | 65.0% | |
| AAGAGGGGCAGCCACCCACG+AGG | - | chr5_1:5354133-5354152 | None:intergenic | 70.0% | |
| CGCCAACAAAGGCGACGGCG+TGG | - | chr5_1:5354970-5354989 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 5351410 | 5355229 | 5351410 | ID=Msa0713220;Name=Msa0713220 |
| chr5_1 | mRNA | 5351410 | 5355229 | 5351410 | ID=Msa0713220-mRNA-1;Parent=Msa0713220;Name=Msa0713220-mRNA-1;_AED=0.39;_eAED=0.39;_QI=28|0.5|0.42|0.57|1|1|7|0|640 |
| chr5_1 | exon | 5351410 | 5351973 | 5351410 | ID=Msa0713220-mRNA-1:exon:2339;Parent=Msa0713220-mRNA-1 |
| chr5_1 | exon | 5352157 | 5352367 | 5352157 | ID=Msa0713220-mRNA-1:exon:2340;Parent=Msa0713220-mRNA-1 |
| chr5_1 | exon | 5352656 | 5352766 | 5352656 | ID=Msa0713220-mRNA-1:exon:2341;Parent=Msa0713220-mRNA-1 |
| chr5_1 | exon | 5352900 | 5353667 | 5352900 | ID=Msa0713220-mRNA-1:exon:2342;Parent=Msa0713220-mRNA-1 |
| chr5_1 | exon | 5354452 | 5354619 | 5354452 | ID=Msa0713220-mRNA-1:exon:2343;Parent=Msa0713220-mRNA-1 |
| chr5_1 | exon | 5354706 | 5354774 | 5354706 | ID=Msa0713220-mRNA-1:exon:2344;Parent=Msa0713220-mRNA-1 |
| chr5_1 | exon | 5355170 | 5355229 | 5355170 | ID=Msa0713220-mRNA-1:exon:2345;Parent=Msa0713220-mRNA-1 |
| chr5_1 | five_prime_UTR | 5351410 | 5351437 | 5351410 | ID=Msa0713220-mRNA-1:five_prime_utr;Parent=Msa0713220-mRNA-1 |
| chr5_1 | CDS | 5351438 | 5351973 | 5351438 | ID=Msa0713220-mRNA-1:cds;Parent=Msa0713220-mRNA-1 |
| chr5_1 | CDS | 5352157 | 5352367 | 5352157 | ID=Msa0713220-mRNA-1:cds;Parent=Msa0713220-mRNA-1 |
| chr5_1 | CDS | 5352656 | 5352766 | 5352656 | ID=Msa0713220-mRNA-1:cds;Parent=Msa0713220-mRNA-1 |
| chr5_1 | CDS | 5352900 | 5353667 | 5352900 | ID=Msa0713220-mRNA-1:cds;Parent=Msa0713220-mRNA-1 |
| chr5_1 | CDS | 5354452 | 5354619 | 5354452 | ID=Msa0713220-mRNA-1:cds;Parent=Msa0713220-mRNA-1 |
| chr5_1 | CDS | 5354706 | 5354774 | 5354706 | ID=Msa0713220-mRNA-1:cds;Parent=Msa0713220-mRNA-1 |
| chr5_1 | CDS | 5355170 | 5355229 | 5355170 | ID=Msa0713220-mRNA-1:cds;Parent=Msa0713220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
