Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0273580 | PNY18001.1 | 78.869 | 336 | 70 | 1 | 1 | 336 | 1 | 335 | 0.0 | 546 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0273580 | sp|Q9FJ47|SAG12_ARATH | 47.522 | 343 | 171 | 6 | 1 | 336 | 6 | 346 | 4.70e-109 | 324 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0273580 | A0A2K3PRV5 | 78.869 | 336 | 70 | 1 | 1 | 336 | 1 | 335 | 0.0 | 546 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021460 | Msa0273580 | 0.818372 | 2.029274e-52 | -8.615850e-47 |
| Msa0033340 | Msa0273580 | 0.822485 | 2.309915e-53 | -8.615850e-47 |
| Msa0055730 | Msa0273580 | 0.807685 | 4.478801e-50 | -8.615850e-47 |
| Msa0142230 | Msa0273580 | 0.805192 | 1.502741e-49 | -8.615850e-47 |
| Msa0193010 | Msa0273580 | 0.856898 | 2.356718e-62 | -8.615850e-47 |
| Msa0235190 | Msa0273580 | 0.909072 | 8.530603e-82 | -8.615850e-47 |
| Msa0273560 | Msa0273580 | 0.829135 | 6.098727e-55 | -8.615850e-47 |
| Msa0273570 | Msa0273580 | 0.894830 | 1.705053e-75 | -8.615850e-47 |
| Msa0273580 | Msa0313780 | 0.903727 | 2.571065e-79 | -8.615850e-47 |
| Msa0273580 | Msa0313920 | 0.905720 | 3.186210e-80 | -8.615850e-47 |
| Msa0273580 | Msa0363980 | 0.838812 | 2.302764e-57 | -8.615850e-47 |
| Msa0273580 | Msa0452410 | 0.816051 | 6.747840e-52 | -8.615850e-47 |
| Msa0273580 | Msa0458700 | 0.819954 | 8.851974e-53 | -8.615850e-47 |
| Msa0273580 | Msa0533290 | 0.808629 | 2.819215e-50 | -8.615850e-47 |
| Msa0273580 | Msa0533430 | 0.817195 | 3.740075e-52 | -8.615850e-47 |
| Msa0273580 | Msa0580610 | 0.842516 | 2.464857e-58 | -8.615850e-47 |
| Msa0273580 | Msa0584130 | 0.808592 | 2.871529e-50 | -8.615850e-47 |
| Msa0273580 | Msa0629850 | 0.807713 | 4.417836e-50 | -8.615850e-47 |
| Msa0273580 | Msa0629880 | 0.812658 | 3.795809e-51 | -8.615850e-47 |
| Msa0273580 | Msa0784580 | 0.803849 | 2.864848e-49 | -8.615850e-47 |
| Msa0273580 | Msa0818010 | 0.843539 | 1.316759e-58 | -8.615850e-47 |
| Msa0273580 | Msa0818030 | 0.805508 | 1.290505e-49 | -8.615850e-47 |
| Msa0273580 | Msa0858360 | 0.804578 | 2.020138e-49 | -8.615850e-47 |
| Msa0273580 | Msa0883370 | 0.835627 | 1.503161e-56 | -8.615850e-47 |
| Msa0273580 | Msa0912500 | 0.806403 | 8.366912e-50 | -8.615850e-47 |
| Msa0273580 | Msa1006250 | 0.813799 | 2.131599e-51 | -8.615850e-47 |
| Msa0273580 | Msa1020720 | 0.806423 | 8.286913e-50 | -8.615850e-47 |
| Msa0273580 | Msa1027240 | 0.833643 | 4.740426e-56 | -8.615850e-47 |
| Msa0273580 | Msa1077950 | 0.815268 | 1.008452e-51 | -8.615850e-47 |
| Msa0273580 | Msa1198090 | 0.810611 | 1.057847e-50 | -8.615850e-47 |
| Msa0273580 | Msa1359820 | 0.801432 | 9.030164e-49 | -8.615850e-47 |
| Msa0273580 | Msa1423990 | 0.805418 | 1.348131e-49 | -8.615850e-47 |
| Msa0273580 | Msa1444370 | 0.832916 | 7.192749e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0273580 | MtrunA17_Chr2g0283671 | 91.266 | 229 | 19 | 1 | 108 | 336 | 1 | 228 | 1.02e-148 | 417 |
| Msa0273580 | MtrunA17_Chr5g0405751 | 53.412 | 337 | 149 | 5 | 3 | 335 | 11 | 343 | 2.02e-122 | 355 |
| Msa0273580 | MtrunA17_Chr4g0041061 | 53.916 | 332 | 145 | 6 | 9 | 335 | 16 | 344 | 6.87e-122 | 354 |
| Msa0273580 | MtrunA17_Chr4g0060251 | 52.478 | 343 | 152 | 5 | 2 | 335 | 4 | 344 | 1.05e-121 | 353 |
| Msa0273580 | MtrunA17_Chr4g0040881 | 54.601 | 326 | 140 | 6 | 15 | 335 | 22 | 344 | 3.49e-121 | 352 |
| Msa0273580 | MtrunA17_Chr4g0041081 | 53.681 | 326 | 143 | 6 | 15 | 335 | 22 | 344 | 6.43e-121 | 352 |
| Msa0273580 | MtrunA17_Chr4g0024411 | 53.231 | 325 | 145 | 5 | 15 | 335 | 21 | 342 | 8.75e-117 | 341 |
| Msa0273580 | MtrunA17_Chr2g0315491 | 50.150 | 333 | 153 | 4 | 9 | 335 | 15 | 340 | 2.62e-109 | 322 |
| Msa0273580 | MtrunA17_Chr4g0041471 | 47.164 | 335 | 160 | 5 | 9 | 334 | 14 | 340 | 3.15e-109 | 322 |
| Msa0273580 | MtrunA17_Chr4g0041521 | 49.375 | 320 | 152 | 6 | 20 | 335 | 26 | 339 | 7.25e-104 | 308 |
| Msa0273580 | MtrunA17_Chr4g0041481 | 48.438 | 320 | 155 | 6 | 20 | 335 | 26 | 339 | 1.80e-102 | 305 |
| Msa0273580 | MtrunA17_Chr2g0311381 | 47.765 | 358 | 158 | 13 | 1 | 336 | 1 | 351 | 1.63e-100 | 300 |
| Msa0273580 | MtrunA17_Chr1g0208261 | 49.051 | 316 | 152 | 6 | 25 | 334 | 82 | 394 | 1.86e-97 | 297 |
| Msa0273580 | MtrunA17_Chr2g0325121 | 45.058 | 344 | 170 | 9 | 1 | 334 | 1 | 335 | 5.53e-97 | 290 |
| Msa0273580 | MtrunA17_Chr3g0134231 | 46.131 | 336 | 165 | 9 | 10 | 334 | 30 | 360 | 4.17e-96 | 293 |
| Msa0273580 | MtrunA17_Chr4g0040851 | 44.000 | 350 | 170 | 8 | 4 | 336 | 20 | 360 | 1.49e-95 | 288 |
| Msa0273580 | MtrunA17_Chr2g0311471 | 46.686 | 347 | 167 | 9 | 1 | 333 | 1 | 343 | 7.53e-95 | 285 |
| Msa0273580 | MtrunA17_Chr3g0144281 | 45.860 | 314 | 162 | 6 | 25 | 335 | 39 | 347 | 1.75e-93 | 282 |
| Msa0273580 | MtrunA17_Chr2g0311391 | 44.327 | 379 | 159 | 14 | 1 | 335 | 1 | 371 | 2.06e-93 | 283 |
| Msa0273580 | MtrunA17_Chr2g0319991 | 43.824 | 340 | 176 | 7 | 4 | 336 | 13 | 344 | 2.07e-93 | 281 |
| Msa0273580 | MtrunA17_Chr4g0053311 | 42.566 | 343 | 184 | 7 | 4 | 335 | 1 | 341 | 2.92e-93 | 281 |
| Msa0273580 | MtrunA17_Chr7g0248391 | 46.154 | 312 | 155 | 5 | 28 | 336 | 37 | 338 | 5.29e-93 | 280 |
| Msa0273580 | MtrunA17_Chr3g0116551 | 42.262 | 336 | 187 | 6 | 4 | 334 | 10 | 343 | 2.06e-91 | 277 |
| Msa0273580 | MtrunA17_Chr4g0058081 | 44.186 | 344 | 178 | 8 | 1 | 334 | 3 | 342 | 1.05e-90 | 275 |
| Msa0273580 | MtrunA17_Chr3g0142071 | 45.223 | 314 | 151 | 6 | 34 | 335 | 51 | 355 | 5.44e-90 | 276 |
| Msa0273580 | MtrunA17_Chr7g0248811 | 43.109 | 341 | 172 | 6 | 4 | 336 | 10 | 336 | 2.78e-89 | 271 |
| Msa0273580 | MtrunA17_Chr2g0283661 | 77.215 | 158 | 36 | 0 | 1 | 158 | 1 | 158 | 3.88e-87 | 263 |
| Msa0273580 | MtrunA17_Chr2g0283661 | 54.839 | 155 | 65 | 1 | 187 | 336 | 118 | 272 | 3.04e-53 | 176 |
| Msa0273580 | MtrunA17_Chr1g0153011 | 44.337 | 309 | 151 | 6 | 29 | 334 | 51 | 341 | 1.02e-84 | 263 |
| Msa0273580 | MtrunA17_Chr2g0283901 | 41.615 | 322 | 178 | 7 | 20 | 335 | 38 | 355 | 3.39e-75 | 239 |
| Msa0273580 | MtrunA17_Chr1g0156161 | 45.455 | 275 | 123 | 8 | 63 | 333 | 10 | 261 | 4.06e-72 | 224 |
| Msa0273580 | MtrunA17_Chr2g0283741 | 37.152 | 323 | 192 | 6 | 20 | 335 | 40 | 358 | 1.52e-69 | 221 |
| Msa0273580 | MtrunA17_Chr8g0379151 | 39.776 | 357 | 176 | 14 | 4 | 335 | 30 | 372 | 4.92e-68 | 218 |
| Msa0273580 | MtrunA17_Chr0c27g0493921 | 40.308 | 325 | 173 | 12 | 20 | 336 | 38 | 349 | 2.98e-66 | 212 |
| Msa0273580 | MtrunA17_Chr4g0070441 | 40.594 | 303 | 163 | 10 | 20 | 314 | 38 | 331 | 1.36e-62 | 202 |
| Msa0273580 | MtrunA17_Chr4g0035551 | 38.411 | 302 | 148 | 8 | 39 | 316 | 54 | 341 | 3.55e-61 | 199 |
| Msa0273580 | MtrunA17_Chr1g0155781 | 38.644 | 295 | 158 | 8 | 39 | 316 | 57 | 345 | 3.02e-60 | 197 |
| Msa0273580 | MtrunA17_Chr1g0199131 | 38.730 | 315 | 163 | 12 | 36 | 329 | 59 | 364 | 3.21e-59 | 195 |
| Msa0273580 | MtrunA17_Chr2g0311091 | 51.087 | 184 | 77 | 2 | 1 | 171 | 1 | 184 | 7.57e-57 | 182 |
| Msa0273580 | MtrunA17_Chr4g0036731 | 35.461 | 282 | 148 | 9 | 39 | 316 | 54 | 305 | 8.41e-44 | 153 |
| Msa0273580 | MtrunA17_Chr4g0036281 | 33.566 | 286 | 152 | 9 | 39 | 316 | 54 | 309 | 1.55e-41 | 147 |
| Msa0273580 | MtrunA17_Chr4g0037291 | 33.566 | 286 | 152 | 9 | 39 | 316 | 95 | 350 | 3.52e-41 | 147 |
| Msa0273580 | MtrunA17_Chr2g0283751 | 35.200 | 250 | 153 | 6 | 20 | 264 | 40 | 285 | 1.62e-40 | 144 |
| Msa0273580 | MtrunA17_Chr7g0248421 | 47.097 | 155 | 73 | 3 | 145 | 295 | 57 | 206 | 1.07e-38 | 136 |
| Msa0273580 | MtrunA17_Chr7g0248371 | 53.608 | 97 | 45 | 0 | 238 | 334 | 34 | 130 | 3.65e-31 | 115 |
| Msa0273580 | MtrunA17_Chr1g0156771 | 46.825 | 126 | 62 | 4 | 99 | 220 | 32 | 156 | 3.93e-29 | 110 |
| Msa0273580 | MtrunA17_Chr7g0271031 | 26.171 | 363 | 221 | 13 | 7 | 335 | 35 | 384 | 4.43e-27 | 110 |
| Msa0273580 | MtrunA17_Chr7g0271041 | 27.815 | 302 | 187 | 11 | 50 | 327 | 36 | 330 | 9.80e-26 | 105 |
| Msa0273580 | MtrunA17_Chr7g0248661 | 55.405 | 74 | 33 | 0 | 261 | 334 | 2 | 75 | 2.49e-23 | 91.7 |
| Msa0273580 | MtrunA17_Chr1g0167291 | 45.833 | 120 | 56 | 4 | 1 | 115 | 1 | 116 | 4.08e-23 | 92.8 |
| Msa0273580 | MtrunA17_Chr1g0147901 | 48.387 | 93 | 41 | 3 | 4 | 90 | 3 | 94 | 4.56e-18 | 79.7 |
| Msa0273580 | MtrunA17_Chr8g0379671 | 34.646 | 127 | 76 | 3 | 162 | 287 | 23 | 143 | 1.10e-15 | 73.9 |
| Msa0273580 | MtrunA17_Chr4g0011011 | 52.857 | 70 | 29 | 2 | 4 | 69 | 3 | 72 | 9.53e-15 | 68.9 |
| Msa0273580 | MtrunA17_Chr1g0156701 | 45.070 | 71 | 38 | 1 | 23 | 93 | 37 | 106 | 1.65e-14 | 69.3 |
| Msa0273580 | MtrunA17_Chr1g0156691 | 45.161 | 62 | 33 | 1 | 23 | 84 | 37 | 97 | 6.32e-14 | 67.0 |
| Msa0273580 | MtrunA17_Chr3g0120601 | 25.962 | 208 | 133 | 7 | 124 | 314 | 3 | 206 | 7.45e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0273580 | AT2G34080.1 | 52.059 | 340 | 153 | 6 | 4 | 335 | 7 | 344 | 2.53e-120 | 350 |
| Msa0273580 | AT3G49340.1 | 49.704 | 338 | 155 | 4 | 10 | 334 | 4 | 339 | 2.05e-115 | 338 |
| Msa0273580 | AT2G27420.1 | 49.560 | 341 | 162 | 4 | 4 | 334 | 6 | 346 | 5.26e-115 | 337 |
| Msa0273580 | AT1G29090.1 | 50.588 | 340 | 158 | 7 | 4 | 335 | 17 | 354 | 4.08e-111 | 327 |
| Msa0273580 | AT5G45890.1 | 47.522 | 343 | 171 | 6 | 1 | 336 | 6 | 346 | 4.78e-110 | 324 |
| Msa0273580 | AT1G29080.1 | 51.111 | 315 | 146 | 5 | 27 | 335 | 33 | 345 | 6.96e-107 | 316 |
| Msa0273580 | AT3G19390.1 | 45.322 | 342 | 167 | 6 | 4 | 335 | 14 | 345 | 1.11e-99 | 301 |
| Msa0273580 | AT4G35350.1 | 45.588 | 340 | 172 | 7 | 5 | 335 | 17 | 352 | 1.18e-96 | 290 |
| Msa0273580 | AT4G23520.1 | 45.748 | 341 | 166 | 9 | 9 | 334 | 12 | 348 | 8.21e-96 | 288 |
| Msa0273580 | AT1G20850.1 | 46.006 | 313 | 165 | 4 | 25 | 335 | 43 | 353 | 2.71e-95 | 287 |
| Msa0273580 | AT5G43060.1 | 46.835 | 316 | 157 | 6 | 25 | 334 | 42 | 352 | 5.79e-95 | 290 |
| Msa0273580 | AT1G29110.1 | 47.516 | 322 | 146 | 9 | 23 | 336 | 28 | 334 | 7.26e-95 | 285 |
| Msa0273580 | AT3G48340.1 | 45.376 | 346 | 173 | 10 | 1 | 334 | 1 | 342 | 5.75e-94 | 284 |
| Msa0273580 | AT5G50260.1 | 44.058 | 345 | 178 | 8 | 1 | 334 | 1 | 341 | 1.42e-93 | 283 |
| Msa0273580 | AT1G09850.1 | 46.129 | 310 | 158 | 5 | 29 | 334 | 28 | 332 | 3.60e-93 | 284 |
| Msa0273580 | AT1G47128.1 | 44.479 | 317 | 162 | 8 | 25 | 334 | 42 | 351 | 6.80e-92 | 282 |
| Msa0273580 | AT4G11310.1 | 44.904 | 314 | 164 | 7 | 25 | 334 | 43 | 351 | 9.70e-92 | 278 |
| Msa0273580 | AT4G11320.2 | 45.574 | 305 | 159 | 6 | 34 | 334 | 57 | 358 | 1.06e-90 | 276 |
| Msa0273580 | AT4G11320.1 | 45.574 | 305 | 159 | 6 | 34 | 334 | 57 | 358 | 1.06e-90 | 276 |
| Msa0273580 | AT4G36880.1 | 44.237 | 321 | 167 | 7 | 25 | 334 | 41 | 360 | 1.37e-90 | 276 |
| Msa0273580 | AT3G19400.1 | 44.795 | 317 | 165 | 6 | 25 | 335 | 36 | 348 | 1.73e-89 | 272 |
| Msa0273580 | AT3G48350.1 | 44.620 | 316 | 168 | 6 | 25 | 335 | 30 | 343 | 3.28e-87 | 266 |
| Msa0273580 | AT1G06260.1 | 42.308 | 338 | 179 | 7 | 7 | 334 | 10 | 341 | 1.07e-82 | 254 |
| Msa0273580 | AT3G43960.1 | 43.210 | 324 | 173 | 8 | 18 | 334 | 26 | 345 | 1.65e-81 | 253 |
| Msa0273580 | AT5G60360.1 | 41.538 | 325 | 171 | 11 | 19 | 336 | 45 | 357 | 3.35e-69 | 220 |
| Msa0273580 | AT5G60360.2 | 40.923 | 325 | 172 | 10 | 19 | 336 | 45 | 356 | 1.38e-67 | 216 |
| Msa0273580 | AT4G35350.2 | 44.280 | 271 | 139 | 6 | 5 | 266 | 17 | 284 | 4.81e-67 | 213 |
| Msa0273580 | AT5G60360.3 | 41.254 | 303 | 163 | 9 | 19 | 314 | 45 | 339 | 8.80e-65 | 209 |
| Msa0273580 | AT4G39090.1 | 38.305 | 295 | 159 | 8 | 39 | 316 | 57 | 345 | 9.51e-63 | 204 |
| Msa0273580 | AT3G45310.1 | 40.062 | 322 | 174 | 11 | 22 | 336 | 48 | 357 | 2.12e-62 | 202 |
| Msa0273580 | AT3G45310.2 | 39.441 | 322 | 175 | 10 | 22 | 336 | 48 | 356 | 8.42e-61 | 199 |
| Msa0273580 | AT2G21430.1 | 37.179 | 312 | 170 | 10 | 25 | 316 | 37 | 342 | 1.13e-59 | 196 |
| Msa0273580 | AT3G19400.2 | 42.276 | 246 | 133 | 5 | 25 | 264 | 36 | 278 | 3.77e-59 | 192 |
| Msa0273580 | AT3G54940.2 | 39.404 | 302 | 154 | 11 | 36 | 316 | 54 | 347 | 7.61e-58 | 191 |
| Msa0273580 | AT4G16190.1 | 37.419 | 310 | 161 | 8 | 39 | 327 | 61 | 358 | 1.89e-56 | 188 |
| Msa0273580 | AT3G48350.2 | 42.449 | 245 | 134 | 6 | 25 | 264 | 30 | 272 | 2.59e-55 | 182 |
| Msa0273580 | AT3G54940.3 | 37.555 | 229 | 125 | 6 | 36 | 252 | 54 | 276 | 6.15e-42 | 147 |
| Msa0273580 | AT1G02305.1 | 26.599 | 297 | 183 | 8 | 62 | 329 | 49 | 339 | 1.27e-27 | 111 |
| Msa0273580 | AT4G01610.1 | 28.041 | 296 | 172 | 11 | 62 | 327 | 46 | 330 | 1.48e-27 | 111 |
| Msa0273580 | AT4G01610.2 | 27.365 | 296 | 174 | 11 | 62 | 327 | 46 | 330 | 1.45e-25 | 105 |
| Msa0273580 | AT1G02300.1 | 30.476 | 210 | 119 | 7 | 140 | 327 | 146 | 350 | 5.11e-20 | 90.1 |
| Msa0273580 | AT2G22160.1 | 44.828 | 87 | 41 | 3 | 56 | 140 | 17 | 98 | 4.23e-14 | 68.2 |
Find 73 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCATTTGATCATTTAAT+TGG | 0.195265 | 2_3:-5163937 | None:intergenic |
| AAGCAAAGAGCTTCATTAAA+AGG | 0.271345 | 2_3:-5164374 | None:intergenic |
| TCACTGGTTAAATCAGAATA+TGG | 0.286491 | 2_3:-5162170 | None:intergenic |
| AAATTCTGCCTACATATAAA+TGG | 0.286686 | 2_3:+5164424 | Msa0273580:three_prime_UTR |
| TACGAATTTCAAAATATTAG+AGG | 0.286885 | 2_3:+5164311 | Msa0273580:three_prime_UTR |
| TTAAATCAGAATATGGATTT+AGG | 0.297132 | 2_3:-5162163 | None:intergenic |
| TACATGGGAGATGTTTATTC+AGG | 0.305565 | 2_3:+5164079 | Msa0273580:CDS |
| GAGTTTATTGCTTCACATAC+TGG | 0.311986 | 2_3:+5162194 | Msa0273580:CDS |
| ATTGGTTGATTAAGAATTCT+TGG | 0.312011 | 2_3:+5164173 | Msa0273580:CDS |
| CAGCAATGGATGATAAAATA+TGG | 0.313356 | 2_3:+5162029 | Msa0273580:CDS |
| AGAATTCTTGGGGTAAAGAT+TGG | 0.334902 | 2_3:+5164185 | Msa0273580:CDS |
| GTCTGACTACCTTCTTGATA+TGG | 0.336745 | 2_3:-5163911 | None:intergenic |
| TTGGTTGATTAAGAATTCTT+GGG | 0.374775 | 2_3:+5164174 | Msa0273580:CDS |
| GAATTCTTGGGGTAAAGATT+GGG | 0.376941 | 2_3:+5164186 | Msa0273580:CDS |
| TGGGTGTGGTGGAGGTAATA+TGG | 0.384068 | 2_3:+5163832 | Msa0273580:CDS |
| CTCATTATCTGAGCAACAAT+TGG | 0.401955 | 2_3:+5163787 | Msa0273580:CDS |
| TGCTTACTATTGTGGATGTA+TGG | 0.402458 | 2_3:+5164470 | Msa0273580:three_prime_UTR |
| ACTGCAATGCCAACTGATAC+TGG | 0.406208 | 2_3:-5164037 | None:intergenic |
| TAGCAGTTGTTGTTCATCAT+TGG | 0.413217 | 2_3:-5163996 | None:intergenic |
| TTGGAAGAAGAAAGTTGGTT+AGG | 0.433566 | 2_3:-5162227 | None:intergenic |
| TCAGTCGTAGCTGCTGTAGA+AGG | 0.446164 | 2_3:+5163734 | Msa0273580:CDS |
| TATTATATTGCTTACTATTG+TGG | 0.446413 | 2_3:+5164462 | Msa0273580:three_prime_UTR |
| GGTTTGTATTATATATTTGA+AGG | 0.448659 | 2_3:-5163861 | None:intergenic |
| GGTAAAGATTGGGGTGAAGA+AGG | 0.460104 | 2_3:+5164196 | Msa0273580:CDS |
| TGATGAATTTCAACATTACA+TGG | 0.464191 | 2_3:+5164063 | Msa0273580:CDS |
| TGTCTCACTAACAATACCTT+GGG | 0.465163 | 2_3:-5163882 | None:intergenic |
| AATATCATCATTCAGGTTGA+AGG | 0.470988 | 2_3:-5162270 | None:intergenic |
| GCAGTTACTGCAGTTGGTTA+CGG | 0.478465 | 2_3:+5164127 | Msa0273580:CDS |
| TATTGCAACTGACCTCATCT+TGG | 0.484425 | 2_3:-5162246 | None:intergenic |
| CTGTCTCACTAACAATACCT+TGG | 0.493668 | 2_3:-5163883 | None:intergenic |
| AGTTGTTGTTCATCATTGGC+AGG | 0.496843 | 2_3:-5163992 | None:intergenic |
| TATAGTTACCACAACTGCCT+TGG | 0.504428 | 2_3:-5162343 | None:intergenic |
| AACCATGCAGTTACTGCAGT+TGG | 0.506721 | 2_3:+5164121 | Msa0273580:CDS |
| AGGTTACATGAAGTTGTTGA+GGG | 0.508816 | 2_3:+5164216 | Msa0273580:CDS |
| TGAAGCAATAAACTCTTCAC+TGG | 0.512575 | 2_3:-5162186 | None:intergenic |
| GCAATGCCACATTGACCTCC+TGG | 0.513337 | 2_3:-5164250 | None:intergenic |
| TTGAGGGAAAGTGGTGAACC+AGG | 0.520538 | 2_3:+5164232 | Msa0273580:CDS |
| CTGTTTCCATCATGATCTTG+TGG | 0.520879 | 2_3:+5161946 | Msa0273580:CDS |
| AACTTTCTTCTTCCAAGATG+AGG | 0.525404 | 2_3:+5162234 | Msa0273580:CDS |
| AATTCTTGGGGTAAAGATTG+GGG | 0.530447 | 2_3:+5164187 | Msa0273580:CDS |
| GGTTACGGTGTAAGTGAAGA+TGG | 0.532156 | 2_3:+5164142 | Msa0273580:CDS |
| GTGAAGATGGAACTAAGTAT+TGG | 0.533019 | 2_3:+5164155 | Msa0273580:CDS |
| GTTAAAGACCAAGGCAGTTG+TGG | 0.536089 | 2_3:+5162335 | Msa0273580:CDS |
| ATGAAGTTGTTGAGGGAAAG+TGG | 0.542145 | 2_3:+5164223 | Msa0273580:CDS |
| CTGAGTTAGAGAAACGCAAA+AGG | 0.542307 | 2_3:+5162072 | Msa0273580:CDS |
| TCATCTTGGAAGAAGAAAGT+TGG | 0.545211 | 2_3:-5162232 | None:intergenic |
| CAGAACAATGGGTGTGGTGG+AGG | 0.560185 | 2_3:+5163824 | Msa0273580:CDS |
| TTCAGACAGTGTTCGAGACA+TGG | 0.563661 | 2_3:-5161985 | None:intergenic |
| AAGGTTACATGAAGTTGTTG+AGG | 0.582698 | 2_3:+5164215 | Msa0273580:CDS |
| ACTGCGATGAACAGAACAAT+GGG | 0.582764 | 2_3:+5163813 | Msa0273580:CDS |
| TTGTTGAAGCACATCAGCAA+TGG | 0.583298 | 2_3:+5162015 | Msa0273580:CDS |
| ATATCATCATTCAGGTTGAA+GGG | 0.586071 | 2_3:-5162269 | None:intergenic |
| TGGTTGATTAAGAATTCTTG+GGG | 0.586376 | 2_3:+5164175 | Msa0273580:CDS |
| CGTAACAAGAGTTACAAGCT+TGG | 0.588084 | 2_3:+5162140 | Msa0273580:CDS |
| TTGTGGATGTATGGACTAAG+TGG | 0.599059 | 2_3:+5164479 | Msa0273580:three_prime_UTR |
| ACAGATTATCCATATCAAGA+AGG | 0.601748 | 2_3:+5163902 | Msa0273580:CDS |
| GATGTTTATTCAGGAACATG+TGG | 0.602261 | 2_3:+5164088 | Msa0273580:CDS |
| AACCAACTGCAGTAACTGCA+TGG | 0.607601 | 2_3:-5164123 | None:intergenic |
| GTTACTAATGTTAAAGACCA+AGG | 0.622785 | 2_3:+5162326 | Msa0273580:CDS |
| GTATCAGTTGGCATTGCAGT+CGG | 0.623362 | 2_3:+5164040 | Msa0273580:CDS |
| GATGAATTTCAACATTACAT+GGG | 0.623570 | 2_3:+5164064 | Msa0273580:CDS |
| AAAATTGATTGGAGACAACA+AGG | 0.627921 | 2_3:+5162299 | Msa0273580:CDS |
| GAACAGAACAATGGGTGTGG+TGG | 0.628748 | 2_3:+5163821 | Msa0273580:CDS |
| AAATGTCCACAAGATCATGA+TGG | 0.632055 | 2_3:-5161952 | None:intergenic |
| GCACAACAACCAGTATCAGT+TGG | 0.635741 | 2_3:+5164028 | Msa0273580:CDS |
| TTGCTGATGTGCTTCAACAA+CGG | 0.639015 | 2_3:-5162012 | None:intergenic |
| GGTGCTGTGAAAATCAAGAC+TGG | 0.639937 | 2_3:+5163755 | Msa0273580:CDS |
| AAATATATAATACAAACCCA+AGG | 0.655643 | 2_3:+5163866 | Msa0273580:CDS |
| GGTGAACCAGGAGGTCAATG+TGG | 0.664219 | 2_3:+5164244 | Msa0273580:CDS |
| GACTGCGATGAACAGAACAA+TGG | 0.669619 | 2_3:+5163812 | Msa0273580:CDS |
| TGTGGATGTATGGACTAAGT+GGG | 0.676007 | 2_3:+5164480 | Msa0273580:three_prime_UTR |
| GATGAACAGAACAATGGGTG+TGG | 0.700071 | 2_3:+5163818 | Msa0273580:CDS |
| AGGGAAAGTGGTGAACCAGG+AGG | 0.728920 | 2_3:+5164235 | Msa0273580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTGTAGTTAAATAT+AGG | - | chr2_3:5161905-5161924 | None:intergenic | 10.0% |
| !!! | TTAGAAAATTATATGAATTT+TGG | - | chr2_3:5162760-5162779 | None:intergenic | 10.0% |
| !!! | ATTATAACTCTATTTTTTTT+TGG | + | chr2_3:5163092-5163111 | Msa0273580:intron | 10.0% |
| !! | AAATAAAACAATTAAAAACA+TGG | - | chr2_3:5163325-5163344 | None:intergenic | 10.0% |
| !!! | AATAATTTTTTCTTTTTTTG+GGG | + | chr2_3:5163431-5163450 | Msa0273580:intron | 10.0% |
| !!! | AAAGTTACATTTTAATATTA+TGG | + | chr2_3:5163587-5163606 | Msa0273580:intron | 10.0% |
| !! | ATAAAAAAATATTATATGGT+GGG | - | chr2_3:5164292-5164311 | None:intergenic | 10.0% |
| !! | TATAAAAAAATATTATATGG+TGG | - | chr2_3:5164293-5164312 | None:intergenic | 10.0% |
| !! | TCGTATAAAAAAATATTATA+TGG | - | chr2_3:5164296-5164315 | None:intergenic | 10.0% |
| !! | ATATTCCAAAAAAAATTGAT+TGG | + | chr2_3:5162288-5162307 | Msa0273580:CDS | 15.0% |
| !! | AAAATTCTTAATTGCATAAT+TGG | - | chr2_3:5162466-5162485 | None:intergenic | 15.0% |
| !! | ATTTCATTTGATCATTTAAT+TGG | - | chr2_3:5163940-5163959 | None:intergenic | 15.0% |
| !!! | TTATTTTTCCATTTATATGT+AGG | - | chr2_3:5164435-5164454 | None:intergenic | 15.0% |
| !!! | AAGAGAATGTTTTTTGAAAA+AGG | - | chr2_3:5161877-5161896 | None:intergenic | 20.0% |
| !! | TTAAATCAGAATATGGATTT+AGG | - | chr2_3:5162166-5162185 | None:intergenic | 20.0% |
| !!! | TATTTTTTAGTTAGTCATCT+TGG | + | chr2_3:5162390-5162409 | Msa0273580:intron | 20.0% |
| !!! | TTTTATGTTTCAAAATTCCA+TGG | - | chr2_3:5162417-5162436 | None:intergenic | 20.0% |
| !!! | TATGCAATTAAGAATTTTCA+TGG | + | chr2_3:5162468-5162487 | Msa0273580:intron | 20.0% |
| !!! | TTTTGTGATATATAATGGAA+TGG | - | chr2_3:5162551-5162570 | None:intergenic | 20.0% |
| !!! | TTGGATTTTGTGATATATAA+TGG | - | chr2_3:5162556-5162575 | None:intergenic | 20.0% |
| !! | ATTAATATTGCATTGAAAAG+TGG | - | chr2_3:5163061-5163080 | None:intergenic | 20.0% |
| !!! | TATCATTCAATATGTTTTGT+AGG | + | chr2_3:5163695-5163714 | Msa0273580:intron | 20.0% |
| !! | GGTTTGTATTATATATTTGA+AGG | - | chr2_3:5163864-5163883 | None:intergenic | 20.0% |
| !! | AAATATATAATACAAACCCA+AGG | + | chr2_3:5163866-5163885 | Msa0273580:CDS | 20.0% |
| !! | TACGAATTTCAAAATATTAG+AGG | + | chr2_3:5164311-5164330 | Msa0273580:three_prime_UTR | 20.0% |
| !! | TATTATATTGCTTACTATTG+TGG | + | chr2_3:5164462-5164481 | Msa0273580:three_prime_UTR | 20.0% |
| !!! | TTTTTGGAATATCATCATTC+AGG | - | chr2_3:5162280-5162299 | None:intergenic | 25.0% |
| !!! | TGTCTCCAATCAATTTTTTT+TGG | - | chr2_3:5162296-5162315 | None:intergenic | 25.0% |
| !! | TAAAGTGTTTGGAAGATATT+TGG | - | chr2_3:5162575-5162594 | None:intergenic | 25.0% |
| ! | ATTCGATGGATGAATAAATA+TGG | - | chr2_3:5162836-5162855 | None:intergenic | 25.0% |
| ! | GCAAAAAGTTCAGTTATTAT+TGG | + | chr2_3:5163280-5163299 | Msa0273580:intron | 25.0% |
| ! | AAAGTTCAGTTATTATTGGA+CGG | + | chr2_3:5163284-5163303 | Msa0273580:intron | 25.0% |
| ! | TGATGAATTTCAACATTACA+TGG | + | chr2_3:5164063-5164082 | Msa0273580:CDS | 25.0% |
| ! | GATGAATTTCAACATTACAT+GGG | + | chr2_3:5164064-5164083 | Msa0273580:CDS | 25.0% |
| ! | ATTGGTTGATTAAGAATTCT+TGG | + | chr2_3:5164173-5164192 | Msa0273580:CDS | 25.0% |
| ! | TTGGTTGATTAAGAATTCTT+GGG | + | chr2_3:5164174-5164193 | Msa0273580:CDS | 25.0% |
| ! | AAATTCTGCCTACATATAAA+TGG | + | chr2_3:5164424-5164443 | Msa0273580:three_prime_UTR | 25.0% |
| CAGCAATGGATGATAAAATA+TGG | + | chr2_3:5162029-5162048 | Msa0273580:CDS | 30.0% | |
| ! | TCACTGGTTAAATCAGAATA+TGG | - | chr2_3:5162173-5162192 | None:intergenic | 30.0% |
| !! | ATATCATCATTCAGGTTGAA+GGG | - | chr2_3:5162272-5162291 | None:intergenic | 30.0% |
| !! | AATATCATCATTCAGGTTGA+AGG | - | chr2_3:5162273-5162292 | None:intergenic | 30.0% |
| AAAATTGATTGGAGACAACA+AGG | + | chr2_3:5162299-5162318 | Msa0273580:CDS | 30.0% | |
| GTTACTAATGTTAAAGACCA+AGG | + | chr2_3:5162326-5162345 | Msa0273580:CDS | 30.0% | |
| !! | TTTTCATGGATTGAATGACA+TGG | + | chr2_3:5162482-5162501 | Msa0273580:intron | 30.0% |
| ! | TGTGCTTCATTTAAAGTGTT+TGG | - | chr2_3:5162586-5162605 | None:intergenic | 30.0% |
| TGATGTGTTTATGTGGTATT+TGG | - | chr2_3:5162618-5162637 | None:intergenic | 30.0% | |
| !! | GTAGTATTGATGTGTTTATG+TGG | - | chr2_3:5162625-5162644 | None:intergenic | 30.0% |
| ATGGATCAGTTAATTTAGGA+CGG | - | chr2_3:5163000-5163019 | None:intergenic | 30.0% | |
| GCAAATGGATCAGTTAATTT+AGG | - | chr2_3:5163004-5163023 | None:intergenic | 30.0% | |
| !!! | GACAATTTTTTGTGTGCAAA+TGG | - | chr2_3:5163019-5163038 | None:intergenic | 30.0% |
| !! | TGGAATGAGTCAGTTATTTT+AGG | - | chr2_3:5163041-5163060 | None:intergenic | 30.0% |
| TTAAGTGTCTTGTCAAGTAT+TGG | - | chr2_3:5163203-5163222 | None:intergenic | 30.0% | |
| GTAAAAGAGAGAGAGAAAAA+CGG | - | chr2_3:5163227-5163246 | None:intergenic | 30.0% | |
| TAAGGAGAAAATTGAACAAG+CGG | + | chr2_3:5163347-5163366 | Msa0273580:intron | 30.0% | |
| ! | TATGTTTTGTAGGATGTTGT+TGG | + | chr2_3:5163705-5163724 | Msa0273580:intron | 30.0% |
| ! | ATGTTTTGTAGGATGTTGTT+GGG | + | chr2_3:5163706-5163725 | Msa0273580:intron | 30.0% |
| ACAGATTATCCATATCAAGA+AGG | + | chr2_3:5163902-5163921 | Msa0273580:CDS | 30.0% | |
| TGGTTGATTAAGAATTCTTG+GGG | + | chr2_3:5164175-5164194 | Msa0273580:CDS | 30.0% | |
| AAGCAAAGAGCTTCATTAAA+AGG | - | chr2_3:5164377-5164396 | None:intergenic | 30.0% | |
| AAATGTCCACAAGATCATGA+TGG | - | chr2_3:5161955-5161974 | None:intergenic | 35.0% | |
| TGAAGCAATAAACTCTTCAC+TGG | - | chr2_3:5162189-5162208 | None:intergenic | 35.0% | |
| GAGTTTATTGCTTCACATAC+TGG | + | chr2_3:5162194-5162213 | Msa0273580:CDS | 35.0% | |
| ! | TTGGAAGAAGAAAGTTGGTT+AGG | - | chr2_3:5162230-5162249 | None:intergenic | 35.0% |
| TCATCTTGGAAGAAGAAAGT+TGG | - | chr2_3:5162235-5162254 | None:intergenic | 35.0% | |
| AACTTTCTTCTTCCAAGATG+AGG | + | chr2_3:5162234-5162253 | Msa0273580:CDS | 35.0% | |
| TTCATCCATCGAATATCGAA+AGG | + | chr2_3:5162842-5162861 | Msa0273580:intron | 35.0% | |
| TCATCCATCGAATATCGAAA+GGG | + | chr2_3:5162843-5162862 | Msa0273580:intron | 35.0% | |
| AATACCCTTTCGATATTCGA+TGG | - | chr2_3:5162850-5162869 | None:intergenic | 35.0% | |
| TTCAGTTATTATTGGACGGA+TGG | + | chr2_3:5163288-5163307 | Msa0273580:intron | 35.0% | |
| ACAAGGACACCTAATTTGAT+CGG | + | chr2_3:5163519-5163538 | Msa0273580:intron | 35.0% | |
| TCACAAACACCGATCAAATT+AGG | - | chr2_3:5163531-5163550 | None:intergenic | 35.0% | |
| CTCATTATCTGAGCAACAAT+TGG | + | chr2_3:5163787-5163806 | Msa0273580:CDS | 35.0% | |
| TGTCTCACTAACAATACCTT+GGG | - | chr2_3:5163885-5163904 | None:intergenic | 35.0% | |
| ! | TAGCAGTTGTTGTTCATCAT+TGG | - | chr2_3:5163999-5164018 | None:intergenic | 35.0% |
| TACATGGGAGATGTTTATTC+AGG | + | chr2_3:5164079-5164098 | Msa0273580:CDS | 35.0% | |
| GATGTTTATTCAGGAACATG+TGG | + | chr2_3:5164088-5164107 | Msa0273580:CDS | 35.0% | |
| GTGAAGATGGAACTAAGTAT+TGG | + | chr2_3:5164155-5164174 | Msa0273580:CDS | 35.0% | |
| AGAATTCTTGGGGTAAAGAT+TGG | + | chr2_3:5164185-5164204 | Msa0273580:CDS | 35.0% | |
| GAATTCTTGGGGTAAAGATT+GGG | + | chr2_3:5164186-5164205 | Msa0273580:CDS | 35.0% | |
| AATTCTTGGGGTAAAGATTG+GGG | + | chr2_3:5164187-5164206 | Msa0273580:CDS | 35.0% | |
| AAGGTTACATGAAGTTGTTG+AGG | + | chr2_3:5164215-5164234 | Msa0273580:CDS | 35.0% | |
| AGGTTACATGAAGTTGTTGA+GGG | + | chr2_3:5164216-5164235 | Msa0273580:CDS | 35.0% | |
| TGCTTACTATTGTGGATGTA+TGG | + | chr2_3:5164470-5164489 | Msa0273580:three_prime_UTR | 35.0% | |
| CTGTTTCCATCATGATCTTG+TGG | + | chr2_3:5161946-5161965 | Msa0273580:CDS | 40.0% | |
| TTGCTGATGTGCTTCAACAA+CGG | - | chr2_3:5162015-5162034 | None:intergenic | 40.0% | |
| TTGTTGAAGCACATCAGCAA+TGG | + | chr2_3:5162015-5162034 | Msa0273580:CDS | 40.0% | |
| CTGAGTTAGAGAAACGCAAA+AGG | + | chr2_3:5162072-5162091 | Msa0273580:CDS | 40.0% | |
| CGTAACAAGAGTTACAAGCT+TGG | + | chr2_3:5162140-5162159 | Msa0273580:CDS | 40.0% | |
| TATTGCAACTGACCTCATCT+TGG | - | chr2_3:5162249-5162268 | None:intergenic | 40.0% | |
| TATAGTTACCACAACTGCCT+TGG | - | chr2_3:5162346-5162365 | None:intergenic | 40.0% | |
| TAGTTAGTCATCTTGGACCA+TGG | + | chr2_3:5162397-5162416 | Msa0273580:intron | 40.0% | |
| ACTGCGATGAACAGAACAAT+GGG | + | chr2_3:5163813-5163832 | Msa0273580:CDS | 40.0% | |
| CTGTCTCACTAACAATACCT+TGG | - | chr2_3:5163886-5163905 | None:intergenic | 40.0% | |
| GTCTGACTACCTTCTTGATA+TGG | - | chr2_3:5163914-5163933 | None:intergenic | 40.0% | |
| ! | AGTTGTTGTTCATCATTGGC+AGG | - | chr2_3:5163995-5164014 | None:intergenic | 40.0% |
| ATGAAGTTGTTGAGGGAAAG+TGG | + | chr2_3:5164223-5164242 | Msa0273580:CDS | 40.0% | |
| ! | TTGTGGATGTATGGACTAAG+TGG | + | chr2_3:5164479-5164498 | Msa0273580:three_prime_UTR | 40.0% |
| ! | TGTGGATGTATGGACTAAGT+GGG | + | chr2_3:5164480-5164499 | Msa0273580:three_prime_UTR | 40.0% |
| TTCAGACAGTGTTCGAGACA+TGG | - | chr2_3:5161988-5162007 | None:intergenic | 45.0% | |
| GTTAAAGACCAAGGCAGTTG+TGG | + | chr2_3:5162335-5162354 | Msa0273580:CDS | 45.0% | |
| TTAGTCGATGTTGTCAGCCA+TGG | + | chr2_3:5163457-5163476 | Msa0273580:intron | 45.0% | |
| TAGTCGATGTTGTCAGCCAT+GGG | + | chr2_3:5163458-5163477 | Msa0273580:intron | 45.0% | |
| AGCCATGGGTCTCATCTTAT+GGG | + | chr2_3:5163472-5163491 | Msa0273580:intron | 45.0% | |
| GTTGACGTGTGTCTGATACA+AGG | + | chr2_3:5163502-5163521 | Msa0273580:intron | 45.0% | |
| ! | GGTGCTGTGAAAATCAAGAC+TGG | + | chr2_3:5163755-5163774 | Msa0273580:CDS | 45.0% |
| GACTGCGATGAACAGAACAA+TGG | + | chr2_3:5163812-5163831 | Msa0273580:CDS | 45.0% | |
| GATGAACAGAACAATGGGTG+TGG | + | chr2_3:5163818-5163837 | Msa0273580:CDS | 45.0% | |
| GCACAACAACCAGTATCAGT+TGG | + | chr2_3:5164028-5164047 | Msa0273580:CDS | 45.0% | |
| ACTGCAATGCCAACTGATAC+TGG | - | chr2_3:5164040-5164059 | None:intergenic | 45.0% | |
| GTATCAGTTGGCATTGCAGT+CGG | + | chr2_3:5164040-5164059 | Msa0273580:CDS | 45.0% | |
| AACCATGCAGTTACTGCAGT+TGG | + | chr2_3:5164121-5164140 | Msa0273580:CDS | 45.0% | |
| AACCAACTGCAGTAACTGCA+TGG | - | chr2_3:5164126-5164145 | None:intergenic | 45.0% | |
| GCAGTTACTGCAGTTGGTTA+CGG | + | chr2_3:5164127-5164146 | Msa0273580:CDS | 45.0% | |
| GGTTACGGTGTAAGTGAAGA+TGG | + | chr2_3:5164142-5164161 | Msa0273580:CDS | 45.0% | |
| GGTAAAGATTGGGGTGAAGA+AGG | + | chr2_3:5164196-5164215 | Msa0273580:CDS | 45.0% | |
| !!! | TTTAATTGTTTTATTTTTTA+AGG | + | chr2_3:5163329-5163348 | Msa0273580:intron | 5.0% |
| !!! | AAAATAATTTTTTCTTTTTT+TGG | + | chr2_3:5163429-5163448 | Msa0273580:intron | 5.0% |
| !!! | AAATAATTTTTTCTTTTTTT+GGG | + | chr2_3:5163430-5163449 | Msa0273580:intron | 5.0% |
| CAGCCATGGGTCTCATCTTA+TGG | + | chr2_3:5163471-5163490 | Msa0273580:intron | 50.0% | |
| CACCCATAAGATGAGACCCA+TGG | - | chr2_3:5163477-5163496 | None:intergenic | 50.0% | |
| TCAGTCGTAGCTGCTGTAGA+AGG | + | chr2_3:5163734-5163753 | Msa0273580:CDS | 50.0% | |
| GAACAGAACAATGGGTGTGG+TGG | + | chr2_3:5163821-5163840 | Msa0273580:CDS | 50.0% | |
| ! | TGGGTGTGGTGGAGGTAATA+TGG | + | chr2_3:5163832-5163851 | Msa0273580:CDS | 50.0% |
| TTGAGGGAAAGTGGTGAACC+AGG | + | chr2_3:5164232-5164251 | Msa0273580:CDS | 50.0% | |
| CAGAACAATGGGTGTGGTGG+AGG | + | chr2_3:5163824-5163843 | Msa0273580:CDS | 55.0% | |
| AGGGAAAGTGGTGAACCAGG+AGG | + | chr2_3:5164235-5164254 | Msa0273580:CDS | 55.0% | |
| GGTGAACCAGGAGGTCAATG+TGG | + | chr2_3:5164244-5164263 | Msa0273580:CDS | 55.0% | |
| GCAATGCCACATTGACCTCC+TGG | - | chr2_3:5164253-5164272 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 5161870 | 5164504 | 5161870 | ID=Msa0273580;Name=Msa0273580 |
| chr2_3 | mRNA | 5161870 | 5164504 | 5161870 | ID=Msa0273580-mRNA-1;Parent=Msa0273580;Name=Msa0273580-mRNA-1;_AED=0.00;_eAED=0.00;_QI=60|1|1|1|1|1|2|204|336 |
| chr2_3 | exon | 5161870 | 5162356 | 5161870 | ID=Msa0273580-mRNA-1:exon:2493;Parent=Msa0273580-mRNA-1 |
| chr2_3 | exon | 5163717 | 5164504 | 5163717 | ID=Msa0273580-mRNA-1:exon:2494;Parent=Msa0273580-mRNA-1 |
| chr2_3 | five_prime_UTR | 5161870 | 5161929 | 5161870 | ID=Msa0273580-mRNA-1:five_prime_utr;Parent=Msa0273580-mRNA-1 |
| chr2_3 | CDS | 5161930 | 5162356 | 5161930 | ID=Msa0273580-mRNA-1:cds;Parent=Msa0273580-mRNA-1 |
| chr2_3 | CDS | 5163717 | 5164300 | 5163717 | ID=Msa0273580-mRNA-1:cds;Parent=Msa0273580-mRNA-1 |
| chr2_3 | three_prime_UTR | 5164301 | 5164504 | 5164301 | ID=Msa0273580-mRNA-1:three_prime_utr;Parent=Msa0273580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
