Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0313780 | XP_003593765.1 | 91.703 | 229 | 14 | 2 | 1 | 225 | 137 | 364 | 4.19e-143 | 414 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0313780 | sp|Q9FJ47|SAG12_ARATH | 54.839 | 217 | 93 | 2 | 14 | 225 | 130 | 346 | 4.50e-81 | 248 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021460 | Msa0313780 | 0.805313 | 1.417746e-49 | -8.615850e-47 |
| Msa0033340 | Msa0313780 | 0.823886 | 1.088190e-53 | -8.615850e-47 |
| Msa0055690 | Msa0313780 | 0.810286 | 1.242950e-50 | -8.615850e-47 |
| Msa0055730 | Msa0313780 | 0.826568 | 2.526579e-54 | -8.615850e-47 |
| Msa0142230 | Msa0313780 | 0.812463 | 4.186528e-51 | -8.615850e-47 |
| Msa0193010 | Msa0313780 | 0.868961 | 4.424012e-66 | -8.615850e-47 |
| Msa0235190 | Msa0313780 | 0.912152 | 2.701480e-83 | -8.615850e-47 |
| Msa0273560 | Msa0313780 | 0.807148 | 5.823667e-50 | -8.615850e-47 |
| Msa0273570 | Msa0313780 | 0.845871 | 3.099664e-59 | -8.615850e-47 |
| Msa0273580 | Msa0313780 | 0.903727 | 2.571065e-79 | -8.615850e-47 |
| Msa0313780 | Msa0313920 | 0.924715 | 4.864020e-90 | -8.615850e-47 |
| Msa0313780 | Msa0363980 | 0.825937 | 3.569501e-54 | -8.615850e-47 |
| Msa0313780 | Msa0452410 | 0.820451 | 6.811667e-53 | -8.615850e-47 |
| Msa0313780 | Msa0458700 | 0.809926 | 1.486304e-50 | -8.615850e-47 |
| Msa0313780 | Msa0533430 | 0.812505 | 4.099202e-51 | -8.615850e-47 |
| Msa0313780 | Msa0580610 | 0.832551 | 8.861392e-56 | -8.615850e-47 |
| Msa0313780 | Msa0584130 | 0.823418 | 1.399951e-53 | -8.615850e-47 |
| Msa0313780 | Msa0754180 | 0.805990 | 1.022394e-49 | -8.615850e-47 |
| Msa0313780 | Msa0784580 | 0.828025 | 1.130817e-54 | -8.615850e-47 |
| Msa0313780 | Msa0818010 | 0.822900 | 1.849546e-53 | -8.615850e-47 |
| Msa0313780 | Msa0818030 | 0.809968 | 1.455523e-50 | -8.615850e-47 |
| Msa0313780 | Msa0858360 | 0.803912 | 2.779183e-49 | -8.615850e-47 |
| Msa0313780 | Msa0883370 | 0.818347 | 2.055726e-52 | -8.615850e-47 |
| Msa0313780 | Msa0912500 | 0.801519 | 8.664965e-49 | -8.615850e-47 |
| Msa0313780 | Msa1006250 | 0.814525 | 1.474112e-51 | -8.615850e-47 |
| Msa0313780 | Msa1027240 | 0.828151 | 1.054201e-54 | -8.615850e-47 |
| Msa0313780 | Msa1077950 | 0.821413 | 4.092105e-53 | -8.615850e-47 |
| Msa0313780 | Msa1107800 | 0.815511 | 8.906461e-52 | -8.615850e-47 |
| Msa0313780 | Msa1198090 | 0.838786 | 2.337557e-57 | -8.615850e-47 |
| Msa0313780 | Msa1308620 | 0.805465 | 1.317299e-49 | -8.615850e-47 |
| Msa0313780 | Msa1396830 | 0.805137 | 1.543546e-49 | -8.615850e-47 |
| Msa0313780 | Msa1444370 | 0.824574 | 7.498768e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0313780 | MtrunA17_Chr2g0283671 | 91.703 | 229 | 14 | 2 | 1 | 225 | 1 | 228 | 6.46e-147 | 408 |
| Msa0313780 | MtrunA17_Chr4g0060251 | 58.716 | 218 | 83 | 3 | 14 | 224 | 127 | 344 | 1.14e-85 | 257 |
| Msa0313780 | MtrunA17_Chr4g0041061 | 57.466 | 221 | 87 | 3 | 11 | 224 | 124 | 344 | 3.72e-85 | 256 |
| Msa0313780 | MtrunA17_Chr4g0040881 | 57.466 | 221 | 87 | 3 | 11 | 224 | 124 | 344 | 4.06e-85 | 256 |
| Msa0313780 | MtrunA17_Chr4g0041081 | 56.561 | 221 | 89 | 3 | 11 | 224 | 124 | 344 | 5.32e-85 | 256 |
| Msa0313780 | MtrunA17_Chr5g0405751 | 55.411 | 231 | 96 | 3 | 1 | 224 | 113 | 343 | 1.50e-84 | 254 |
| Msa0313780 | MtrunA17_Chr4g0024411 | 55.217 | 230 | 96 | 3 | 2 | 224 | 113 | 342 | 8.11e-84 | 253 |
| Msa0313780 | MtrunA17_Chr4g0041471 | 52.778 | 216 | 96 | 3 | 14 | 223 | 125 | 340 | 6.52e-79 | 240 |
| Msa0313780 | MtrunA17_Chr7g0248391 | 51.364 | 220 | 97 | 4 | 13 | 225 | 122 | 338 | 3.25e-76 | 233 |
| Msa0313780 | MtrunA17_Chr4g0058081 | 53.241 | 216 | 94 | 4 | 14 | 223 | 128 | 342 | 6.53e-76 | 233 |
| Msa0313780 | MtrunA17_Chr3g0116551 | 53.023 | 215 | 95 | 3 | 15 | 223 | 129 | 343 | 1.46e-75 | 232 |
| Msa0313780 | MtrunA17_Chr4g0040851 | 49.573 | 234 | 108 | 5 | 1 | 225 | 128 | 360 | 1.66e-75 | 232 |
| Msa0313780 | MtrunA17_Chr3g0144281 | 50.917 | 218 | 100 | 4 | 13 | 224 | 131 | 347 | 1.90e-73 | 226 |
| Msa0313780 | MtrunA17_Chr2g0315491 | 54.338 | 219 | 93 | 3 | 13 | 224 | 122 | 340 | 3.98e-73 | 225 |
| Msa0313780 | MtrunA17_Chr2g0325121 | 49.327 | 223 | 105 | 4 | 8 | 223 | 114 | 335 | 1.94e-72 | 223 |
| Msa0313780 | MtrunA17_Chr4g0053311 | 50.673 | 223 | 102 | 5 | 8 | 223 | 119 | 340 | 2.77e-71 | 221 |
| Msa0313780 | MtrunA17_Chr3g0142071 | 51.152 | 217 | 99 | 4 | 14 | 224 | 140 | 355 | 5.39e-71 | 223 |
| Msa0313780 | MtrunA17_Chr4g0041521 | 51.376 | 218 | 97 | 5 | 14 | 224 | 124 | 339 | 5.91e-71 | 219 |
| Msa0313780 | MtrunA17_Chr4g0041481 | 50.917 | 218 | 98 | 5 | 14 | 224 | 124 | 339 | 6.80e-71 | 219 |
| Msa0313780 | MtrunA17_Chr1g0208261 | 52.727 | 220 | 96 | 5 | 11 | 223 | 176 | 394 | 7.30e-71 | 224 |
| Msa0313780 | MtrunA17_Chr3g0134231 | 50.218 | 229 | 106 | 5 | 2 | 223 | 133 | 360 | 2.78e-70 | 222 |
| Msa0313780 | MtrunA17_Chr1g0153011 | 50.901 | 222 | 101 | 5 | 9 | 223 | 121 | 341 | 5.49e-69 | 218 |
| Msa0313780 | MtrunA17_Chr2g0319991 | 47.273 | 220 | 109 | 3 | 13 | 225 | 125 | 344 | 7.95e-69 | 214 |
| Msa0313780 | MtrunA17_Chr1g0156161 | 49.130 | 230 | 106 | 7 | 1 | 222 | 35 | 261 | 6.96e-68 | 209 |
| Msa0313780 | MtrunA17_Chr7g0248811 | 47.511 | 221 | 104 | 4 | 13 | 225 | 120 | 336 | 7.96e-67 | 209 |
| Msa0313780 | MtrunA17_Chr2g0311381 | 49.565 | 230 | 98 | 11 | 7 | 225 | 129 | 351 | 5.12e-60 | 192 |
| Msa0313780 | MtrunA17_Chr2g0283661 | 47.111 | 225 | 59 | 5 | 1 | 225 | 108 | 272 | 3.44e-59 | 187 |
| Msa0313780 | MtrunA17_Chr2g0283901 | 45.701 | 221 | 110 | 5 | 12 | 224 | 137 | 355 | 6.88e-57 | 187 |
| Msa0313780 | MtrunA17_Chr2g0311391 | 48.444 | 225 | 94 | 11 | 14 | 224 | 155 | 371 | 1.71e-55 | 181 |
| Msa0313780 | MtrunA17_Chr2g0311471 | 47.248 | 218 | 102 | 7 | 14 | 222 | 130 | 343 | 3.74e-55 | 179 |
| Msa0313780 | MtrunA17_Chr2g0283741 | 41.475 | 217 | 118 | 4 | 15 | 223 | 142 | 357 | 3.72e-52 | 172 |
| Msa0313780 | MtrunA17_Chr0c27g0493921 | 45.291 | 223 | 105 | 9 | 14 | 225 | 133 | 349 | 2.40e-51 | 169 |
| Msa0313780 | MtrunA17_Chr1g0199131 | 40.678 | 236 | 116 | 8 | 4 | 218 | 132 | 364 | 1.73e-50 | 168 |
| Msa0313780 | MtrunA17_Chr4g0035551 | 41.256 | 223 | 106 | 8 | 5 | 205 | 122 | 341 | 2.23e-50 | 167 |
| Msa0313780 | MtrunA17_Chr1g0155781 | 42.273 | 220 | 104 | 7 | 7 | 205 | 128 | 345 | 1.36e-49 | 165 |
| Msa0313780 | MtrunA17_Chr8g0379151 | 44.144 | 222 | 109 | 7 | 12 | 223 | 155 | 371 | 1.81e-49 | 166 |
| Msa0313780 | MtrunA17_Chr4g0070441 | 46.269 | 201 | 95 | 7 | 14 | 203 | 133 | 331 | 6.43e-48 | 160 |
| Msa0313780 | MtrunA17_Chr7g0248421 | 45.806 | 155 | 71 | 4 | 38 | 184 | 57 | 206 | 1.95e-36 | 127 |
| Msa0313780 | MtrunA17_Chr4g0036731 | 37.321 | 209 | 98 | 8 | 5 | 205 | 122 | 305 | 3.09e-34 | 124 |
| Msa0313780 | MtrunA17_Chr7g0248371 | 53.608 | 97 | 45 | 0 | 127 | 223 | 34 | 130 | 3.44e-32 | 114 |
| Msa0313780 | MtrunA17_Chr4g0036281 | 34.742 | 213 | 102 | 8 | 5 | 205 | 122 | 309 | 8.65e-32 | 118 |
| Msa0313780 | MtrunA17_Chr4g0037291 | 33.962 | 212 | 105 | 7 | 5 | 205 | 163 | 350 | 1.70e-31 | 118 |
| Msa0313780 | MtrunA17_Chr2g0283751 | 40.000 | 145 | 78 | 5 | 15 | 153 | 144 | 285 | 1.06e-25 | 101 |
| Msa0313780 | MtrunA17_Chr7g0271041 | 31.760 | 233 | 124 | 10 | 14 | 216 | 103 | 330 | 2.65e-24 | 99.0 |
| Msa0313780 | MtrunA17_Chr7g0248661 | 55.405 | 74 | 33 | 0 | 150 | 223 | 2 | 75 | 3.27e-24 | 91.7 |
| Msa0313780 | MtrunA17_Chr1g0156771 | 43.860 | 114 | 56 | 4 | 1 | 106 | 41 | 154 | 3.85e-24 | 94.0 |
| Msa0313780 | MtrunA17_Chr7g0271031 | 29.046 | 241 | 128 | 8 | 14 | 218 | 147 | 380 | 4.33e-23 | 95.9 |
| Msa0313780 | MtrunA17_Chr8g0379671 | 34.646 | 127 | 76 | 3 | 51 | 176 | 23 | 143 | 7.22e-16 | 72.4 |
| Msa0313780 | MtrunA17_Chr2g0311091 | 56.863 | 51 | 18 | 1 | 14 | 60 | 134 | 184 | 8.91e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0313780 | AT3G49340.1 | 58.491 | 212 | 81 | 3 | 17 | 223 | 130 | 339 | 1.28e-83 | 252 |
| Msa0313780 | AT5G45890.1 | 54.839 | 217 | 93 | 2 | 14 | 225 | 130 | 346 | 4.58e-82 | 248 |
| Msa0313780 | AT2G34080.1 | 56.306 | 222 | 89 | 4 | 8 | 223 | 124 | 343 | 9.00e-82 | 248 |
| Msa0313780 | AT2G27420.1 | 56.332 | 229 | 89 | 5 | 6 | 223 | 118 | 346 | 6.74e-81 | 246 |
| Msa0313780 | AT3G48340.1 | 54.630 | 216 | 91 | 4 | 14 | 223 | 128 | 342 | 4.98e-78 | 239 |
| Msa0313780 | AT1G29080.1 | 54.709 | 223 | 92 | 5 | 8 | 223 | 124 | 344 | 1.70e-76 | 234 |
| Msa0313780 | AT5G50260.1 | 52.294 | 218 | 98 | 3 | 12 | 223 | 124 | 341 | 2.22e-76 | 234 |
| Msa0313780 | AT3G19390.1 | 54.018 | 224 | 95 | 5 | 8 | 224 | 123 | 345 | 3.81e-76 | 237 |
| Msa0313780 | AT1G20850.1 | 52.995 | 217 | 95 | 4 | 14 | 224 | 138 | 353 | 5.93e-76 | 233 |
| Msa0313780 | AT1G29090.1 | 57.075 | 212 | 82 | 5 | 19 | 223 | 144 | 353 | 6.06e-75 | 231 |
| Msa0313780 | AT4G35350.1 | 50.649 | 231 | 105 | 5 | 2 | 224 | 123 | 352 | 1.36e-73 | 227 |
| Msa0313780 | AT5G43060.1 | 52.036 | 221 | 99 | 4 | 9 | 223 | 133 | 352 | 2.69e-73 | 229 |
| Msa0313780 | AT4G23520.1 | 52.511 | 219 | 96 | 5 | 12 | 223 | 131 | 348 | 4.76e-73 | 226 |
| Msa0313780 | AT4G36880.1 | 50.917 | 218 | 99 | 5 | 13 | 223 | 144 | 360 | 6.06e-73 | 226 |
| Msa0313780 | AT3G48350.1 | 51.835 | 218 | 98 | 4 | 14 | 224 | 126 | 343 | 1.39e-72 | 225 |
| Msa0313780 | AT4G11310.1 | 49.091 | 220 | 103 | 5 | 11 | 223 | 134 | 351 | 1.81e-71 | 222 |
| Msa0313780 | AT4G11320.2 | 48.858 | 219 | 103 | 5 | 12 | 223 | 142 | 358 | 2.54e-70 | 219 |
| Msa0313780 | AT4G11320.1 | 48.858 | 219 | 103 | 5 | 12 | 223 | 142 | 358 | 2.54e-70 | 219 |
| Msa0313780 | AT1G09850.1 | 50.463 | 216 | 100 | 4 | 14 | 223 | 118 | 332 | 4.89e-70 | 221 |
| Msa0313780 | AT1G47128.1 | 47.826 | 230 | 107 | 6 | 3 | 223 | 126 | 351 | 1.49e-68 | 218 |
| Msa0313780 | AT3G19400.1 | 51.121 | 223 | 97 | 6 | 12 | 224 | 128 | 348 | 6.65e-67 | 210 |
| Msa0313780 | AT1G06260.1 | 51.835 | 218 | 96 | 5 | 13 | 223 | 126 | 341 | 1.24e-66 | 209 |
| Msa0313780 | AT1G29110.1 | 50.000 | 210 | 92 | 5 | 19 | 225 | 135 | 334 | 4.58e-63 | 199 |
| Msa0313780 | AT3G43960.1 | 45.045 | 222 | 111 | 7 | 12 | 223 | 125 | 345 | 4.85e-54 | 177 |
| Msa0313780 | AT5G60360.1 | 45.291 | 223 | 105 | 9 | 14 | 225 | 141 | 357 | 6.24e-51 | 169 |
| Msa0313780 | AT4G39090.1 | 41.364 | 220 | 106 | 7 | 7 | 205 | 128 | 345 | 1.02e-50 | 169 |
| Msa0313780 | AT5G60360.2 | 44.395 | 223 | 106 | 8 | 14 | 225 | 141 | 356 | 1.93e-49 | 165 |
| Msa0313780 | AT3G54940.2 | 41.284 | 218 | 99 | 7 | 12 | 205 | 135 | 347 | 3.91e-49 | 164 |
| Msa0313780 | AT2G21430.1 | 41.364 | 220 | 106 | 8 | 7 | 205 | 125 | 342 | 7.74e-49 | 164 |
| Msa0313780 | AT3G45310.1 | 43.498 | 223 | 109 | 9 | 14 | 225 | 141 | 357 | 9.00e-47 | 158 |
| Msa0313780 | AT5G60360.3 | 45.274 | 201 | 97 | 7 | 14 | 203 | 141 | 339 | 1.06e-46 | 158 |
| Msa0313780 | AT3G45310.2 | 42.601 | 223 | 110 | 8 | 14 | 225 | 141 | 356 | 3.23e-45 | 154 |
| Msa0313780 | AT4G16190.1 | 40.000 | 230 | 114 | 6 | 7 | 216 | 133 | 358 | 7.10e-45 | 154 |
| Msa0313780 | AT4G35350.2 | 50.617 | 162 | 72 | 4 | 2 | 155 | 123 | 284 | 1.64e-44 | 150 |
| Msa0313780 | AT3G48350.2 | 50.000 | 152 | 69 | 4 | 14 | 158 | 126 | 277 | 3.09e-41 | 142 |
| Msa0313780 | AT3G19400.2 | 50.000 | 152 | 65 | 5 | 12 | 153 | 128 | 278 | 4.77e-37 | 131 |
| Msa0313780 | AT3G54940.3 | 41.259 | 143 | 70 | 3 | 12 | 141 | 135 | 276 | 4.34e-33 | 120 |
| Msa0313780 | AT1G02305.1 | 28.807 | 243 | 142 | 7 | 6 | 218 | 98 | 339 | 1.72e-26 | 105 |
| Msa0313780 | AT4G01610.1 | 29.185 | 233 | 130 | 8 | 14 | 216 | 103 | 330 | 6.07e-25 | 100 |
| Msa0313780 | AT4G01610.2 | 28.326 | 233 | 132 | 8 | 14 | 216 | 103 | 330 | 5.66e-23 | 95.5 |
| Msa0313780 | AT1G02300.1 | 29.717 | 212 | 122 | 7 | 33 | 218 | 146 | 356 | 3.56e-19 | 85.1 |
Find 51 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCATTTGATCATTTAAT+TGG | 0.195265 | 2_4:+9238115 | None:intergenic |
| TTGTTGGAATATCATCATTC+AGG | 0.284103 | 2_4:+9239178 | None:intergenic |
| TACATGGGAGATGTTTATTC+AGG | 0.305565 | 2_4:-9237973 | Msa0313780:CDS |
| ATTGGTTGATTAAGAATTCT+TGG | 0.312011 | 2_4:-9237879 | Msa0313780:CDS |
| AGAATTCTTGGGGTAAAGAT+TGG | 0.334902 | 2_4:-9237867 | Msa0313780:CDS |
| GTCTGACTACCTTCTTGATA+TGG | 0.336745 | 2_4:+9238141 | None:intergenic |
| TTGGTTGATTAAGAATTCTT+GGG | 0.374775 | 2_4:-9237878 | Msa0313780:CDS |
| GAATTCTTGGGGTAAAGATT+GGG | 0.376941 | 2_4:-9237866 | Msa0313780:CDS |
| TGGGTGTGGTGGAGGTAATA+TGG | 0.384068 | 2_4:-9238220 | Msa0313780:CDS |
| CTCATTATCTGAGCAACAAT+TGG | 0.401955 | 2_4:-9238265 | Msa0313780:CDS |
| ACTGCAATGCCAACTGATAC+TGG | 0.406208 | 2_4:+9238015 | None:intergenic |
| TAGCAGTTGTTGTTCATCAT+TGG | 0.413217 | 2_4:+9238056 | None:intergenic |
| TGTCTCCAATCAAAATTTGT+TGG | 0.429280 | 2_4:+9239162 | None:intergenic |
| GGTTTGTATTATATATTTGA+AGG | 0.448659 | 2_4:+9238191 | None:intergenic |
| GGTAAAGATTGGGGTGAAGA+AGG | 0.460104 | 2_4:-9237856 | Msa0313780:CDS |
| TGATGAATTTCAACATTACA+TGG | 0.464191 | 2_4:-9237989 | Msa0313780:CDS |
| TGTCTCACTAACAATACCTT+GGG | 0.465163 | 2_4:+9238170 | None:intergenic |
| AATATCATCATTCAGGTTGA+AGG | 0.470988 | 2_4:+9239185 | None:intergenic |
| GCAGTTACTGCAGTTGGTTA+CGG | 0.478465 | 2_4:-9237925 | Msa0313780:CDS |
| CTGTCTCACTAACAATACCT+TGG | 0.493668 | 2_4:+9238169 | None:intergenic |
| AGTTGTTGTTCATCATTGGC+AGG | 0.496843 | 2_4:+9238060 | None:intergenic |
| AACCATGCAGTTACTGCAGT+TGG | 0.506721 | 2_4:-9237931 | Msa0313780:CDS |
| AGGTTACATGAAGTTGTTGA+GGG | 0.508816 | 2_4:-9237836 | Msa0313780:CDS |
| GCAATGCCACATTGACCTCC+TGG | 0.513337 | 2_4:+9237802 | None:intergenic |
| TTGAGGGAAAGTGGTGAACC+AGG | 0.520538 | 2_4:-9237820 | Msa0313780:CDS |
| AATTCTTGGGGTAAAGATTG+GGG | 0.530447 | 2_4:-9237865 | Msa0313780:CDS |
| GGTTACGGTGTAAGTGAAGA+TGG | 0.532156 | 2_4:-9237910 | Msa0313780:CDS |
| GTGAAGATGGAACTAAGTAT+TGG | 0.533019 | 2_4:-9237897 | Msa0313780:CDS |
| AAGACATACCACAACTGCCT+TGG | 0.539526 | 2_4:+9239112 | None:intergenic |
| ATGAAGTTGTTGAGGGAAAG+TGG | 0.542145 | 2_4:-9237829 | Msa0313780:CDS |
| GTTAAAGACCAAGGCAGTTG+TGG | 0.558254 | 2_4:-9239120 | Msa0313780:intron |
| CAGAACAATGGGTGTGGTGG+AGG | 0.560185 | 2_4:-9238228 | Msa0313780:CDS |
| ACTGCCTTGGTCTTTAACAT+CGG | 0.570004 | 2_4:+9239125 | None:intergenic |
| AAGGTTACATGAAGTTGTTG+AGG | 0.582698 | 2_4:-9237837 | Msa0313780:CDS |
| ACTGCGATGAACAGAACAAT+GGG | 0.582764 | 2_4:-9238239 | Msa0313780:CDS |
| ATATCATCATTCAGGTTGAA+GGG | 0.586071 | 2_4:+9239186 | None:intergenic |
| TGGTTGATTAAGAATTCTTG+GGG | 0.586376 | 2_4:-9237877 | Msa0313780:CDS |
| ACAGATTATCCATATCAAGA+AGG | 0.601748 | 2_4:-9238150 | Msa0313780:CDS |
| GATGTTTATTCAGGAACATG+TGG | 0.602261 | 2_4:-9237964 | Msa0313780:CDS |
| AACCAACTGCAGTAACTGCA+TGG | 0.607601 | 2_4:+9237929 | None:intergenic |
| GTATCAGTTGGCATTGCAGT+CGG | 0.623362 | 2_4:-9238012 | Msa0313780:CDS |
| GATGAATTTCAACATTACAT+GGG | 0.623570 | 2_4:-9237988 | Msa0313780:CDS |
| GCTGCTGTGAAAATCAAGAC+TGG | 0.627935 | 2_4:-9238297 | Msa0313780:CDS |
| GAACAGAACAATGGGTGTGG+TGG | 0.628748 | 2_4:-9238231 | Msa0313780:CDS |
| GCACAACAACCAGTATCAGT+TGG | 0.635741 | 2_4:-9238024 | Msa0313780:CDS |
| AAATATATAATACAAACCCA+AGG | 0.655643 | 2_4:-9238186 | Msa0313780:CDS |
| GGTGAACCAGGAGGTCAATG+TGG | 0.664219 | 2_4:-9237808 | Msa0313780:CDS |
| GACTGCGATGAACAGAACAA+TGG | 0.669619 | 2_4:-9238240 | Msa0313780:CDS |
| GTTACCGATGTTAAAGACCA+AGG | 0.675798 | 2_4:-9239129 | Msa0313780:CDS |
| GATGAACAGAACAATGGGTG+TGG | 0.700071 | 2_4:-9238234 | Msa0313780:CDS |
| AGGGAAAGTGGTGAACCAGG+AGG | 0.728920 | 2_4:-9237817 | Msa0313780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGTGATATAAAATAAAA+TGG | + | chr2_4:9238074-9238093 | None:intergenic | 10.0% |
| !!! | TTATTTAGATTTTTCTTTTT+TGG | + | chr2_4:9238321-9238340 | None:intergenic | 10.0% |
| !!! | AAAGTTACATTTTAATATTA+AGG | - | chr2_4:9238485-9238504 | Msa0313780:intron | 10.0% |
| !!! | TTTTGTGATATAAAATAAAA+TGG | + | chr2_4:9238074-9238093 | None:intergenic | 10.0% |
| !!! | TTATTTAGATTTTTCTTTTT+TGG | + | chr2_4:9238321-9238340 | None:intergenic | 10.0% |
| !!! | AAAGTTACATTTTAATATTA+AGG | - | chr2_4:9238485-9238504 | Msa0313780:intron | 10.0% |
| !!! | TATATTTTAATTAGTCATCT+TGG | - | chr2_4:9237906-9237925 | Msa0313780:CDS | 15.0% |
| !! | TGATATAAAATAAAATGGAA+TGG | + | chr2_4:9238069-9238088 | None:intergenic | 15.0% |
| !! | AAATATCGAAAAGTTATTTA+AGG | - | chr2_4:9238374-9238393 | Msa0313780:intron | 15.0% |
| !!! | TATTATTCAATATGTTTTGT+AGG | - | chr2_4:9238633-9238652 | Msa0313780:intron | 15.0% |
| !! | ATTTCATTTGATCATTTAAT+TGG | + | chr2_4:9238866-9238885 | None:intergenic | 15.0% |
| !!! | TATATTTTAATTAGTCATCT+TGG | - | chr2_4:9237906-9237925 | Msa0313780:CDS | 15.0% |
| !! | TGATATAAAATAAAATGGAA+TGG | + | chr2_4:9238069-9238088 | None:intergenic | 15.0% |
| !! | AAATATCGAAAAGTTATTTA+AGG | - | chr2_4:9238374-9238393 | Msa0313780:intron | 15.0% |
| !!! | TATTATTCAATATGTTTTGT+AGG | - | chr2_4:9238633-9238652 | Msa0313780:intron | 15.0% |
| !! | ATTTCATTTGATCATTTAAT+TGG | + | chr2_4:9238866-9238885 | None:intergenic | 15.0% |
| !!! | ATATTCCAACAAATTTTGAT+TGG | - | chr2_4:9237811-9237830 | Msa0313780:CDS | 20.0% |
| !!! | TTTAGATTTTTCTTTTTTGG+TGG | + | chr2_4:9238318-9238337 | None:intergenic | 20.0% |
| !!! | AATAACTTTTCGATATTTGA+TGG | + | chr2_4:9238372-9238391 | None:intergenic | 20.0% |
| !! | GGTTTGTATTATATATTTGA+AGG | + | chr2_4:9238790-9238809 | None:intergenic | 20.0% |
| !! | AAATATATAATACAAACCCA+AGG | - | chr2_4:9238792-9238811 | Msa0313780:intron | 20.0% |
| !!! | ATATTCCAACAAATTTTGAT+TGG | - | chr2_4:9237811-9237830 | Msa0313780:CDS | 20.0% |
| !!! | TTTAGATTTTTCTTTTTTGG+TGG | + | chr2_4:9238318-9238337 | None:intergenic | 20.0% |
| !!! | AATAACTTTTCGATATTTGA+TGG | + | chr2_4:9238372-9238391 | None:intergenic | 20.0% |
| !! | GGTTTGTATTATATATTTGA+AGG | + | chr2_4:9238790-9238809 | None:intergenic | 20.0% |
| !! | AAATATATAATACAAACCCA+AGG | - | chr2_4:9238792-9238811 | Msa0313780:intron | 20.0% |
| ! | TATGCTTCATTAAAAGTTCT+CGG | + | chr2_4:9238109-9238128 | None:intergenic | 25.0% |
| ! | TGATGTGTTTATATGGTATT+TGG | + | chr2_4:9238145-9238164 | None:intergenic | 25.0% |
| ! | ACAATGCATAAAAATATGCA+AGG | - | chr2_4:9238270-9238289 | Msa0313780:CDS | 25.0% |
| ! | TGATGAATTTCAACATTACA+TGG | - | chr2_4:9238989-9239008 | Msa0313780:intron | 25.0% |
| ! | GATGAATTTCAACATTACAT+GGG | - | chr2_4:9238990-9239009 | Msa0313780:intron | 25.0% |
| ! | ATTGGTTGATTAAGAATTCT+TGG | - | chr2_4:9239099-9239118 | Msa0313780:intron | 25.0% |
| ! | TTGGTTGATTAAGAATTCTT+GGG | - | chr2_4:9239100-9239119 | Msa0313780:intron | 25.0% |
| ! | TATGCTTCATTAAAAGTTCT+CGG | + | chr2_4:9238109-9238128 | None:intergenic | 25.0% |
| ! | TGATGTGTTTATATGGTATT+TGG | + | chr2_4:9238145-9238164 | None:intergenic | 25.0% |
| ! | ACAATGCATAAAAATATGCA+AGG | - | chr2_4:9238270-9238289 | Msa0313780:CDS | 25.0% |
| ! | TGATGAATTTCAACATTACA+TGG | - | chr2_4:9238989-9239008 | Msa0313780:intron | 25.0% |
| ! | GATGAATTTCAACATTACAT+GGG | - | chr2_4:9238990-9239009 | Msa0313780:intron | 25.0% |
| ! | ATTGGTTGATTAAGAATTCT+TGG | - | chr2_4:9239099-9239118 | Msa0313780:intron | 25.0% |
| ! | TTGGTTGATTAAGAATTCTT+GGG | - | chr2_4:9239100-9239119 | Msa0313780:intron | 25.0% |
| !! | ATATCATCATTCAGGTTGAA+GGG | + | chr2_4:9237795-9237814 | None:intergenic | 30.0% |
| !! | AATATCATCATTCAGGTTGA+AGG | + | chr2_4:9237796-9237815 | None:intergenic | 30.0% |
| TTGTTGGAATATCATCATTC+AGG | + | chr2_4:9237803-9237822 | None:intergenic | 30.0% | |
| TGTCTCCAATCAAAATTTGT+TGG | + | chr2_4:9237819-9237838 | None:intergenic | 30.0% | |
| !!! | AATTTTGATTGGAGACAACA+AGG | - | chr2_4:9237822-9237841 | Msa0313780:CDS | 30.0% |
| TATTGGAGACTTTGTTAGTT+TGG | + | chr2_4:9237966-9237985 | None:intergenic | 30.0% | |
| AACAAAGTCTCCAATATGTT+TGG | - | chr2_4:9237970-9237989 | Msa0313780:CDS | 30.0% | |
| ! | CTCCAATATGTTTGGATTTT+CGG | - | chr2_4:9237978-9237997 | Msa0313780:CDS | 30.0% |
| TACCGAAAATCCAAACATAT+TGG | + | chr2_4:9237983-9238002 | None:intergenic | 30.0% | |
| GGTATAAAGATTGAATGACA+TGG | - | chr2_4:9237999-9238018 | Msa0313780:CDS | 30.0% | |
| ! | GATGTGTTGATGTGTTTATA+TGG | + | chr2_4:9238152-9238171 | None:intergenic | 30.0% |
| CATAAAAATATGCAAGGTCT+GGG | - | chr2_4:9238276-9238295 | Msa0313780:CDS | 30.0% | |
| ATAAAAATATGCAAGGTCTG+GGG | - | chr2_4:9238277-9238296 | Msa0313780:CDS | 30.0% | |
| !!! | AGATTTTTCTTTTTTGGTGG+TGG | + | chr2_4:9238315-9238334 | None:intergenic | 30.0% |
| !! | TGTAATTTCTAGCCTTAGAT+AGG | + | chr2_4:9238516-9238535 | None:intergenic | 30.0% |
| ! | TATGTTTTGTAGGATGTTGT+TGG | - | chr2_4:9238643-9238662 | Msa0313780:intron | 30.0% |
| ! | ATGTTTTGTAGGATGTTGTT+GGG | - | chr2_4:9238644-9238663 | Msa0313780:intron | 30.0% |
| ACAGATTATCCATATCAAGA+AGG | - | chr2_4:9238828-9238847 | Msa0313780:intron | 30.0% | |
| TGGTTGATTAAGAATTCTTG+GGG | - | chr2_4:9239101-9239120 | Msa0313780:intron | 30.0% | |
| !! | ATATCATCATTCAGGTTGAA+GGG | + | chr2_4:9237795-9237814 | None:intergenic | 30.0% |
| !! | AATATCATCATTCAGGTTGA+AGG | + | chr2_4:9237796-9237815 | None:intergenic | 30.0% |
| TTGTTGGAATATCATCATTC+AGG | + | chr2_4:9237803-9237822 | None:intergenic | 30.0% | |
| TGTCTCCAATCAAAATTTGT+TGG | + | chr2_4:9237819-9237838 | None:intergenic | 30.0% | |
| !!! | AATTTTGATTGGAGACAACA+AGG | - | chr2_4:9237822-9237841 | Msa0313780:CDS | 30.0% |
| TATTGGAGACTTTGTTAGTT+TGG | + | chr2_4:9237966-9237985 | None:intergenic | 30.0% | |
| AACAAAGTCTCCAATATGTT+TGG | - | chr2_4:9237970-9237989 | Msa0313780:CDS | 30.0% | |
| ! | CTCCAATATGTTTGGATTTT+CGG | - | chr2_4:9237978-9237997 | Msa0313780:CDS | 30.0% |
| TACCGAAAATCCAAACATAT+TGG | + | chr2_4:9237983-9238002 | None:intergenic | 30.0% | |
| GGTATAAAGATTGAATGACA+TGG | - | chr2_4:9237999-9238018 | Msa0313780:CDS | 30.0% | |
| ! | GATGTGTTGATGTGTTTATA+TGG | + | chr2_4:9238152-9238171 | None:intergenic | 30.0% |
| CATAAAAATATGCAAGGTCT+GGG | - | chr2_4:9238276-9238295 | Msa0313780:CDS | 30.0% | |
| ATAAAAATATGCAAGGTCTG+GGG | - | chr2_4:9238277-9238296 | Msa0313780:CDS | 30.0% | |
| !!! | AGATTTTTCTTTTTTGGTGG+TGG | + | chr2_4:9238315-9238334 | None:intergenic | 30.0% |
| !! | TGTAATTTCTAGCCTTAGAT+AGG | + | chr2_4:9238516-9238535 | None:intergenic | 30.0% |
| ! | TATGTTTTGTAGGATGTTGT+TGG | - | chr2_4:9238643-9238662 | Msa0313780:intron | 30.0% |
| ! | ATGTTTTGTAGGATGTTGTT+GGG | - | chr2_4:9238644-9238663 | Msa0313780:intron | 30.0% |
| ACAGATTATCCATATCAAGA+AGG | - | chr2_4:9238828-9238847 | Msa0313780:intron | 30.0% | |
| TGGTTGATTAAGAATTCTTG+GGG | - | chr2_4:9239101-9239120 | Msa0313780:intron | 30.0% | |
| TAATTAGTCATCTTGGAGCA+TGG | - | chr2_4:9237913-9237932 | Msa0313780:CDS | 35.0% | |
| AAAAGTTCTCGGAGGATATT+TGG | + | chr2_4:9238098-9238117 | None:intergenic | 35.0% | |
| GCATAAAAATATGCAAGGTC+TGG | - | chr2_4:9238275-9238294 | Msa0313780:CDS | 35.0% | |
| ATTAAGGAACCACCTATCTA+AGG | - | chr2_4:9238501-9238520 | Msa0313780:intron | 35.0% | |
| !! | AATTTCTAGCCTTAGATAGG+TGG | + | chr2_4:9238513-9238532 | None:intergenic | 35.0% |
| CTCATTATCTGAGCAACAAT+TGG | - | chr2_4:9238713-9238732 | Msa0313780:intron | 35.0% | |
| TGTCTCACTAACAATACCTT+GGG | + | chr2_4:9238811-9238830 | None:intergenic | 35.0% | |
| ! | TAGCAGTTGTTGTTCATCAT+TGG | + | chr2_4:9238925-9238944 | None:intergenic | 35.0% |
| TACATGGGAGATGTTTATTC+AGG | - | chr2_4:9239005-9239024 | Msa0313780:intron | 35.0% | |
| GATGTTTATTCAGGAACATG+TGG | - | chr2_4:9239014-9239033 | Msa0313780:intron | 35.0% | |
| GTGAAGATGGAACTAAGTAT+TGG | - | chr2_4:9239081-9239100 | Msa0313780:intron | 35.0% | |
| AGAATTCTTGGGGTAAAGAT+TGG | - | chr2_4:9239111-9239130 | Msa0313780:intron | 35.0% | |
| GAATTCTTGGGGTAAAGATT+GGG | - | chr2_4:9239112-9239131 | Msa0313780:intron | 35.0% | |
| AATTCTTGGGGTAAAGATTG+GGG | - | chr2_4:9239113-9239132 | Msa0313780:intron | 35.0% | |
| AAGGTTACATGAAGTTGTTG+AGG | - | chr2_4:9239141-9239160 | Msa0313780:CDS | 35.0% | |
| AGGTTACATGAAGTTGTTGA+GGG | - | chr2_4:9239142-9239161 | Msa0313780:CDS | 35.0% | |
| TAATTAGTCATCTTGGAGCA+TGG | - | chr2_4:9237913-9237932 | Msa0313780:CDS | 35.0% | |
| AAAAGTTCTCGGAGGATATT+TGG | + | chr2_4:9238098-9238117 | None:intergenic | 35.0% | |
| GCATAAAAATATGCAAGGTC+TGG | - | chr2_4:9238275-9238294 | Msa0313780:CDS | 35.0% | |
| ATTAAGGAACCACCTATCTA+AGG | - | chr2_4:9238501-9238520 | Msa0313780:intron | 35.0% | |
| !! | AATTTCTAGCCTTAGATAGG+TGG | + | chr2_4:9238513-9238532 | None:intergenic | 35.0% |
| CTCATTATCTGAGCAACAAT+TGG | - | chr2_4:9238713-9238732 | Msa0313780:intron | 35.0% | |
| TGTCTCACTAACAATACCTT+GGG | + | chr2_4:9238811-9238830 | None:intergenic | 35.0% | |
| ! | TAGCAGTTGTTGTTCATCAT+TGG | + | chr2_4:9238925-9238944 | None:intergenic | 35.0% |
| TACATGGGAGATGTTTATTC+AGG | - | chr2_4:9239005-9239024 | Msa0313780:intron | 35.0% | |
| GATGTTTATTCAGGAACATG+TGG | - | chr2_4:9239014-9239033 | Msa0313780:intron | 35.0% | |
| GTGAAGATGGAACTAAGTAT+TGG | - | chr2_4:9239081-9239100 | Msa0313780:intron | 35.0% | |
| AGAATTCTTGGGGTAAAGAT+TGG | - | chr2_4:9239111-9239130 | Msa0313780:intron | 35.0% | |
| GAATTCTTGGGGTAAAGATT+GGG | - | chr2_4:9239112-9239131 | Msa0313780:intron | 35.0% | |
| AATTCTTGGGGTAAAGATTG+GGG | - | chr2_4:9239113-9239132 | Msa0313780:intron | 35.0% | |
| AAGGTTACATGAAGTTGTTG+AGG | - | chr2_4:9239141-9239160 | Msa0313780:CDS | 35.0% | |
| AGGTTACATGAAGTTGTTGA+GGG | - | chr2_4:9239142-9239161 | Msa0313780:CDS | 35.0% | |
| GTTACCGATGTTAAAGACCA+AGG | - | chr2_4:9237849-9237868 | Msa0313780:CDS | 40.0% | |
| ! | ACTGCCTTGGTCTTTAACAT+CGG | + | chr2_4:9237856-9237875 | None:intergenic | 40.0% |
| GCTTCATTAAAAGTTCTCGG+AGG | + | chr2_4:9238106-9238125 | None:intergenic | 40.0% | |
| GCACAAACACTGATCGAATT+AGG | + | chr2_4:9238428-9238447 | None:intergenic | 40.0% | |
| ACTGCGATGAACAGAACAAT+GGG | - | chr2_4:9238739-9238758 | Msa0313780:intron | 40.0% | |
| CTGTCTCACTAACAATACCT+TGG | + | chr2_4:9238812-9238831 | None:intergenic | 40.0% | |
| GTCTGACTACCTTCTTGATA+TGG | + | chr2_4:9238840-9238859 | None:intergenic | 40.0% | |
| ! | AGTTGTTGTTCATCATTGGC+AGG | + | chr2_4:9238921-9238940 | None:intergenic | 40.0% |
| ATGAAGTTGTTGAGGGAAAG+TGG | - | chr2_4:9239149-9239168 | Msa0313780:CDS | 40.0% | |
| GTTACCGATGTTAAAGACCA+AGG | - | chr2_4:9237849-9237868 | Msa0313780:CDS | 40.0% | |
| ! | ACTGCCTTGGTCTTTAACAT+CGG | + | chr2_4:9237856-9237875 | None:intergenic | 40.0% |
| GCTTCATTAAAAGTTCTCGG+AGG | + | chr2_4:9238106-9238125 | None:intergenic | 40.0% | |
| GCACAAACACTGATCGAATT+AGG | + | chr2_4:9238428-9238447 | None:intergenic | 40.0% | |
| ACTGCGATGAACAGAACAAT+GGG | - | chr2_4:9238739-9238758 | Msa0313780:intron | 40.0% | |
| CTGTCTCACTAACAATACCT+TGG | + | chr2_4:9238812-9238831 | None:intergenic | 40.0% | |
| GTCTGACTACCTTCTTGATA+TGG | + | chr2_4:9238840-9238859 | None:intergenic | 40.0% | |
| ! | AGTTGTTGTTCATCATTGGC+AGG | + | chr2_4:9238921-9238940 | None:intergenic | 40.0% |
| ATGAAGTTGTTGAGGGAAAG+TGG | - | chr2_4:9239149-9239168 | Msa0313780:CDS | 40.0% | |
| GTTAAAGACCAAGGCAGTTG+TGG | - | chr2_4:9237858-9237877 | Msa0313780:CDS | 45.0% | |
| AAGACATACCACAACTGCCT+TGG | + | chr2_4:9237869-9237888 | None:intergenic | 45.0% | |
| GCTGCTGTGAAAATCAAGAC+TGG | - | chr2_4:9238681-9238700 | Msa0313780:intron | 45.0% | |
| GACTGCGATGAACAGAACAA+TGG | - | chr2_4:9238738-9238757 | Msa0313780:intron | 45.0% | |
| GATGAACAGAACAATGGGTG+TGG | - | chr2_4:9238744-9238763 | Msa0313780:intron | 45.0% | |
| GCACAACAACCAGTATCAGT+TGG | - | chr2_4:9238954-9238973 | Msa0313780:intron | 45.0% | |
| ACTGCAATGCCAACTGATAC+TGG | + | chr2_4:9238966-9238985 | None:intergenic | 45.0% | |
| GTATCAGTTGGCATTGCAGT+CGG | - | chr2_4:9238966-9238985 | Msa0313780:intron | 45.0% | |
| AACCATGCAGTTACTGCAGT+TGG | - | chr2_4:9239047-9239066 | Msa0313780:intron | 45.0% | |
| AACCAACTGCAGTAACTGCA+TGG | + | chr2_4:9239052-9239071 | None:intergenic | 45.0% | |
| GCAGTTACTGCAGTTGGTTA+CGG | - | chr2_4:9239053-9239072 | Msa0313780:intron | 45.0% | |
| GGTTACGGTGTAAGTGAAGA+TGG | - | chr2_4:9239068-9239087 | Msa0313780:intron | 45.0% | |
| GGTAAAGATTGGGGTGAAGA+AGG | - | chr2_4:9239122-9239141 | Msa0313780:CDS | 45.0% | |
| GTTAAAGACCAAGGCAGTTG+TGG | - | chr2_4:9237858-9237877 | Msa0313780:CDS | 45.0% | |
| AAGACATACCACAACTGCCT+TGG | + | chr2_4:9237869-9237888 | None:intergenic | 45.0% | |
| GCTGCTGTGAAAATCAAGAC+TGG | - | chr2_4:9238681-9238700 | Msa0313780:intron | 45.0% | |
| GACTGCGATGAACAGAACAA+TGG | - | chr2_4:9238738-9238757 | Msa0313780:intron | 45.0% | |
| GATGAACAGAACAATGGGTG+TGG | - | chr2_4:9238744-9238763 | Msa0313780:intron | 45.0% | |
| GCACAACAACCAGTATCAGT+TGG | - | chr2_4:9238954-9238973 | Msa0313780:intron | 45.0% | |
| ACTGCAATGCCAACTGATAC+TGG | + | chr2_4:9238966-9238985 | None:intergenic | 45.0% | |
| GTATCAGTTGGCATTGCAGT+CGG | - | chr2_4:9238966-9238985 | Msa0313780:intron | 45.0% | |
| AACCATGCAGTTACTGCAGT+TGG | - | chr2_4:9239047-9239066 | Msa0313780:intron | 45.0% | |
| AACCAACTGCAGTAACTGCA+TGG | + | chr2_4:9239052-9239071 | None:intergenic | 45.0% | |
| GCAGTTACTGCAGTTGGTTA+CGG | - | chr2_4:9239053-9239072 | Msa0313780:intron | 45.0% | |
| GGTTACGGTGTAAGTGAAGA+TGG | - | chr2_4:9239068-9239087 | Msa0313780:intron | 45.0% | |
| GGTAAAGATTGGGGTGAAGA+AGG | - | chr2_4:9239122-9239141 | Msa0313780:CDS | 45.0% | |
| !! | AATAATAAATATAAACATAA+TGG | - | chr2_4:9238247-9238266 | Msa0313780:CDS | 5.0% |
| !! | AATAATAAATATAAACATAA+TGG | - | chr2_4:9238247-9238266 | Msa0313780:CDS | 5.0% |
| !!! | TTCTTTTTTGGTGGTGGCCG+CGG | + | chr2_4:9238309-9238328 | None:intergenic | 50.0% |
| GAACAGAACAATGGGTGTGG+TGG | - | chr2_4:9238747-9238766 | Msa0313780:intron | 50.0% | |
| ! | TGGGTGTGGTGGAGGTAATA+TGG | - | chr2_4:9238758-9238777 | Msa0313780:intron | 50.0% |
| TTGAGGGAAAGTGGTGAACC+AGG | - | chr2_4:9239158-9239177 | Msa0313780:CDS | 50.0% | |
| !!! | TTCTTTTTTGGTGGTGGCCG+CGG | + | chr2_4:9238309-9238328 | None:intergenic | 50.0% |
| GAACAGAACAATGGGTGTGG+TGG | - | chr2_4:9238747-9238766 | Msa0313780:intron | 50.0% | |
| ! | TGGGTGTGGTGGAGGTAATA+TGG | - | chr2_4:9238758-9238777 | Msa0313780:intron | 50.0% |
| TTGAGGGAAAGTGGTGAACC+AGG | - | chr2_4:9239158-9239177 | Msa0313780:CDS | 50.0% | |
| CAGAACAATGGGTGTGGTGG+AGG | - | chr2_4:9238750-9238769 | Msa0313780:intron | 55.0% | |
| AGGGAAAGTGGTGAACCAGG+AGG | - | chr2_4:9239161-9239180 | Msa0313780:CDS | 55.0% | |
| GGTGAACCAGGAGGTCAATG+TGG | - | chr2_4:9239170-9239189 | Msa0313780:CDS | 55.0% | |
| GCAATGCCACATTGACCTCC+TGG | + | chr2_4:9239179-9239198 | None:intergenic | 55.0% | |
| CAGAACAATGGGTGTGGTGG+AGG | - | chr2_4:9238750-9238769 | Msa0313780:intron | 55.0% | |
| AGGGAAAGTGGTGAACCAGG+AGG | - | chr2_4:9239161-9239180 | Msa0313780:CDS | 55.0% | |
| GGTGAACCAGGAGGTCAATG+TGG | - | chr2_4:9239170-9239189 | Msa0313780:CDS | 55.0% | |
| GCAATGCCACATTGACCTCC+TGG | + | chr2_4:9239179-9239198 | None:intergenic | 55.0% | |
| ! | AAGGTCTGGGGTTCGAACCG+CGG | - | chr2_4:9238289-9238308 | Msa0313780:CDS | 60.0% |
| ! | AAGGTCTGGGGTTCGAACCG+CGG | - | chr2_4:9238289-9238308 | Msa0313780:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 9237774 | 9239226 | 9237774 | ID=Msa0313780;Name=Msa0313780 |
| chr2_4 | mRNA | 9237774 | 9239226 | 9237774 | ID=Msa0313780-mRNA-1;Parent=Msa0313780;Name=Msa0313780-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0|0|1|1|1|2|0|225 |
| chr2_4 | exon | 9239121 | 9239226 | 9239121 | ID=Msa0313780-mRNA-1:exon:3575;Parent=Msa0313780-mRNA-1 |
| chr2_4 | exon | 9237774 | 9238345 | 9237774 | ID=Msa0313780-mRNA-1:exon:3574;Parent=Msa0313780-mRNA-1 |
| chr2_4 | CDS | 9239121 | 9239226 | 9239121 | ID=Msa0313780-mRNA-1:cds;Parent=Msa0313780-mRNA-1 |
| chr2_4 | CDS | 9237774 | 9238345 | 9237774 | ID=Msa0313780-mRNA-1:cds;Parent=Msa0313780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
