AlfalfaGEDB | Msa0278450

M. sativa cultivar zhongmu-4 / Msa0278450

KEGG: K11547
GO: GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000819 GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007010 GO:0007049 GO:0007059 GO:0007080 GO:0008150 GO:0008608 GO:0009987 GO:0016043 GO:0022402 GO:0031262 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070013 GO:0071840 GO:0098687 GO:0098813 GO:0140014 GO:1903047
PFAM: PF03801.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0278450	XP_003594432.1	90.468	577	25	2	1	549	1	575	0.0	1025

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0278450	sp\|Q9M1G5\|NDC80_ARATH	43.284	536	270	6	24	531	33	562	1.83e-144	431

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0278450	G7IFT2	90.468	577	25	2	1	549	1	575	0.0	1025

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0106620	Msa0278450	0.822577	2.199550e-53	-8.615850e-47
Msa0106710	Msa0278450	0.806347	8.596680e-50	-8.615850e-47
Msa0138370	Msa0278450	0.810002	1.430921e-50	-8.615850e-47
Msa0198130	Msa0278450	0.911115	8.757628e-83	-8.615850e-47
Msa0198230	Msa0278450	0.903237	4.267755e-79	-8.615850e-47
Msa0232020	Msa0278450	0.807825	4.184197e-50	-8.615850e-47
Msa0237210	Msa0278450	0.832152	1.112547e-55	-8.615850e-47
Msa0260510	Msa0278450	0.800031	1.744310e-48	-8.615850e-47
Msa0278330	Msa0278450	0.931984	1.678588e-94	-8.615850e-47
Msa0278350	Msa0278450	0.922269	1.224821e-88	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0278450	MtrunA17_Chr2g0291491	90.468	577	25	2	1	549	1	575	0.0	1025

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0278450	AT3G54630.1	43.284	536	270	6	24	531	33	562	1.86e-145	431

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Find 147 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATAGTTATATATTGG+AGG	0.526340	2_3:-11452310	Msa0278450:CDS
AAAGAGAAGGGTGTGTTGGA+AGG	0.573060	2_3:-11454987	Msa0278450:CDS
AAAGTTTCAGAGATTAGAAG+CGG	0.616241	2_3:-11452387	Msa0278450:CDS
AACCACGCCTGCTGAAATCA+TGG	0.451028	2_3:-11454207	Msa0278450:CDS
AACGGGAAATTCAAGGAGTT+CGG	0.466119	2_3:+11455427	None:intergenic
AAGGATTGAGCCGTTGGAGA+GGG	0.549405	2_3:-11454922	Msa0278450:CDS
AAGTGTCTTTGGGTTGGCGA+CGG	0.533107	2_3:+11455684	None:intergenic
AAGTTTCAGAGATTAGAAGC+GGG	0.618896	2_3:-11452386	Msa0278450:CDS
ACCACGCCTGCTGAAATCAT+GGG	0.594180	2_3:-11454206	Msa0278450:CDS
ACCCATGATTTCAGCAGGCG+TGG	0.557805	2_3:+11454205	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGAAGAGTTTGAGAAGTAA+AGG	+	chr2_3:11452050-11452069	None:intergenic	30.0%
CATAAGATAATTGAGGAGTT+TGG	-	chr2_3:11452482-11452501	Msa0278450:CDS	30.0%
TATCTCAAAACAATAGCGTT+TGG	+	chr2_3:11452909-11452928	None:intergenic	30.0%
TCAAATAGTGGTTGTTATAG+TGG	-	chr2_3:11452956-11452975	Msa0278450:intron	30.0%
GCTTGTGTGTTAATGTTAAT+AGG	-	chr2_3:11453113-11453132	Msa0278450:intron	30.0%
ATTATTTAAACATTGTCGCG+TGG	+	chr2_3:11453776-11453795	None:intergenic	30.0%
TTAAACTATGTACTTTGGAC+TGG	+	chr2_3:11453815-11453834	None:intergenic	30.0%
GTTTATGTTACACTCTTTGT+TGG	-	chr2_3:11453987-11454006	Msa0278450:intron	30.0%
AACAAGCAGTAGAAAAGAAA+AGG	+	chr2_3:11454069-11454088	None:intergenic	30.0%
CATGATAAAGAAAGAAACAC+AGG	-	chr2_3:11454120-11454139	Msa0278450:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	11451723	11455729	11451723	ID=Msa0278450;Name=Msa0278450
chr2_3	mRNA	11451723	11455729	11451723	ID=Msa0278450-mRNA-1;Parent=Msa0278450;Name=Msa0278450-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0\|0.75\|0.8\|1\|0.75\|0.6\|5\|440\|549
chr2_3	exon	11451723	11451791	11451723	ID=Msa0278450-mRNA-1:exon:5175;Parent=Msa0278450-mRNA-1
chr2_3	exon	11451910	11452529	11451910	ID=Msa0278450-mRNA-1:exon:5174;Parent=Msa0278450-mRNA-1
chr2_3	exon	11453203	11453349	11453203	ID=Msa0278450-mRNA-1:exon:5173;Parent=Msa0278450-mRNA-1
chr2_3	exon	11454028	11454274	11454028	ID=Msa0278450-mRNA-1:exon:5172;Parent=Msa0278450-mRNA-1
chr2_3	exon	11454723	11455729	11454723	ID=Msa0278450-mRNA-1:exon:5171;Parent=Msa0278450-mRNA-1
chr2_3	CDS	11454723	11455729	11454723	ID=Msa0278450-mRNA-1:cds;Parent=Msa0278450-mRNA-1
chr2_3	CDS	11454028	11454274	11454028	ID=Msa0278450-mRNA-1:cds;Parent=Msa0278450-mRNA-1
chr2_3	CDS	11453203	11453349	11453203	ID=Msa0278450-mRNA-1:cds;Parent=Msa0278450-mRNA-1
chr2_3	CDS	11452281	11452529	11452281	ID=Msa0278450-mRNA-1:cds;Parent=Msa0278450-mRNA-1
chr2_3	three_prime_UTR	11451910	11452280	11451910	ID=Msa0278450-mRNA-1:three_prime_utr;Parent=Msa0278450-mRNA-1
chr2_3	three_prime_UTR	11451723	11451791	11451723	ID=Msa0278450-mRNA-1:three_prime_utr;Parent=Msa0278450-mRNA-1

Gene Sequence

>Msa0278450

ATGAGACAACCCACCGCCACCCACCGTCGCCAACCCAAAGACACTTCCTACCTTCCACCACCAACCCCTCTCAACCACCGCGATTCCGACATCAGTCTCGTCAGCAGCCGCCCTTCCTCCGTCGGAATCCCCTCATTCGACCTTTACAAAGACCGTTCCTATCAACAATCCGCAATCGCAACCATCAACTCCTTCCTCGCCTCTCACAATTTCCACATCTCTTTCAAATCTTCTCCTTCCCCTTCCGCTAAACAAATCCACGAAACCCTAATTTTCCTCACCGAACTCCTTGAATTTCCCGTTACAAAAATCGAAGACGATCTTCCTTTACTTCTCAAACTCTTCAACTACCCTTTTAAACTTAATAAATCAATTCTTAAAAACCCTGCTACCCCGCATCAATGGCCTTCAATGCTTTGTCTTATTCACTGGCTTGTTCAGATCTGTAATTTTAACCTATCTCTCTCGAATTCGTCGAGTACAACAACTATTCTTCATAACAATAATATTCTATTTGGATATTGTTTGAATAATTATCTTAATTTTATTAGAGGCGATGACGAGGCTATTCTTGATATGGAGGATCAAATTCGCAAAAAGATTCTTCATGAGAAGTCTGTTGCTGAGGAGAAACTGGCTGCTGTTGAGCAAACTGTTGTTGAGTTGGAGGCGCAATTGGAGGAGGTGAGATCCGCGCCGTCTAAGAAGGATGAGCTTGAGAAAGAGAAGGGTGTGTTGGAAGGTGATGTGAATAAGTTTCATAAGATAATTGAGGAGTTTGGGTCAAGGATTGAGCCGTTGGAGAGGGTTTTGGCGGAGAAGGAGAAGCAATTGGAGGCGAAGGTGGTGGAGAATGAGAGGATTGTTGAGGAGAATGAGGAGCTTAAGACGAAAGTGGAGTTGCAGACTTTTAATGCGAGGGATGTGGAGAGGATGAAGAAGGAGTTGCACGCTGTTGAGAGGGATGCTGGTGAGGCGGAACTTGCTAGGAATGCTTGGGAGGAAAAGTTGAAGATTGGTAATGACATTCAGTATGTGTTGAATCCCAAGGGAACCACGCCTGCTGAAATCATGGGTTTTGATTACAAAGTCATGCTGAAGCCTGTGCTTGAATCCTATGCTGATGACATCAAGAGAAGTTCGGTGGTGAAATTGGAAGAGTTGGTTTTCCTTCAGAAAAAGTCCGCTGAAAATGCTGCTAGGCTTGACGTGAAAAGAAATCAACTTGCTGCGCTGCAGTCACGCATTGATCAACTGGAAACTCAAATGGACATGATAAAGAAAGAAACACAGGACTATAGAAATAGATGTTCTGCCGAAGCTAAGAAGATGTCGGACGATATCCAGCTAGCTGATCATGATGTGGGCATTATGGAAAGAGAGGCAGCTGAGGTTTTAAAGGCATCTGAATTGAAGTTGCAGGAAACGATTAGACAAACTGATGAAGAAATTCAAATGCATGCCGGTAAACTTTTTAAGTTGATTGATGCAGTCTCAAAGTATAAAGAACATGTGGGATCTAAAGTTTCAGAGATTAGAAGCGGGCTATCAGAAACTGTAACTGAAGTCTCAAATATATACAGAGATTCATTCCCAGAAAAATATAGTTATATATTGGAGGCAAGCCGTAAAATTCAGAGAATTGAATAA

Protein sequence

>Msa0278450

MRQPTATHRRQPKDTSYLPPPTPLNHRDSDISLVSSRPSSVGIPSFDLYKDRSYQQSAIATINSFLASHNFHISFKSSPSPSAKQIHETLIFLTELLEFPVTKIEDDLPLLLKLFNYPFKLNKSILKNPATPHQWPSMLCLIHWLVQICNFNLSLSNSSSTTTILHNNNILFGYCLNNYLNFIRGDDEAILDMEDQIRKKILHEKSVAEEKLAAVEQTVVELEAQLEEVRSAPSKKDELEKEKGVLEGDVNKFHKIIEEFGSRIEPLERVLAEKEKQLEAKVVENERIVEENEELKTKVELQTFNARDVERMKKELHAVERDAGEAELARNAWEEKLKIGNDIQYVLNPKGTTPAEIMGFDYKVMLKPVLESYADDIKRSSVVKLEELVFLQKKSAENAARLDVKRNQLAALQSRIDQLETQMDMIKKETQDYRNRCSAEAKKMSDDIQLADHDVGIMEREAAEVLKASELKLQETIRQTDEEIQMHAGKLFKLIDAVSKYKEHVGSKVSEIRSGLSETVTEVSNIYRDSFPEKYSYILEASRKIQRIE*