Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0278450 | XP_003594432.1 | 90.468 | 577 | 25 | 2 | 1 | 549 | 1 | 575 | 0.0 | 1025 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0278450 | sp|Q9M1G5|NDC80_ARATH | 43.284 | 536 | 270 | 6 | 24 | 531 | 33 | 562 | 1.83e-144 | 431 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0278450 | G7IFT2 | 90.468 | 577 | 25 | 2 | 1 | 549 | 1 | 575 | 0.0 | 1025 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0106620 | Msa0278450 | 0.822577 | 2.199550e-53 | -8.615850e-47 |
| Msa0106710 | Msa0278450 | 0.806347 | 8.596680e-50 | -8.615850e-47 |
| Msa0138370 | Msa0278450 | 0.810002 | 1.430921e-50 | -8.615850e-47 |
| Msa0198130 | Msa0278450 | 0.911115 | 8.757628e-83 | -8.615850e-47 |
| Msa0198230 | Msa0278450 | 0.903237 | 4.267755e-79 | -8.615850e-47 |
| Msa0232020 | Msa0278450 | 0.807825 | 4.184197e-50 | -8.615850e-47 |
| Msa0237210 | Msa0278450 | 0.832152 | 1.112547e-55 | -8.615850e-47 |
| Msa0260510 | Msa0278450 | 0.800031 | 1.744310e-48 | -8.615850e-47 |
| Msa0278330 | Msa0278450 | 0.931984 | 1.678588e-94 | -8.615850e-47 |
| Msa0278350 | Msa0278450 | 0.922269 | 1.224821e-88 | -8.615850e-47 |
| Msa0278370 | Msa0278450 | 0.965092 | 3.701616e-124 | -8.615850e-47 |
| Msa0278450 | Msa0279710 | 0.818830 | 1.596945e-52 | -8.615850e-47 |
| Msa0278450 | Msa0310090 | 0.804270 | 2.341109e-49 | -8.615850e-47 |
| Msa0278450 | Msa0315690 | 0.826856 | 2.155949e-54 | -8.615850e-47 |
| Msa0278450 | Msa0328080 | 0.853836 | 1.835873e-61 | -8.615850e-47 |
| Msa0278450 | Msa0328150 | 0.946404 | 4.926287e-105 | -8.615850e-47 |
| Msa0278450 | Msa0483100 | 0.842563 | 2.395510e-58 | -8.615850e-47 |
| Msa0278450 | Msa0534720 | 0.842985 | 1.850699e-58 | -8.615850e-47 |
| Msa0278450 | Msa0619050 | 0.800893 | 1.164107e-48 | -8.615850e-47 |
| Msa0278450 | Msa0641220 | 0.800685 | 1.283652e-48 | -8.615850e-47 |
| Msa0278450 | Msa0658590 | 0.805805 | 1.117821e-49 | -8.615850e-47 |
| Msa0278450 | Msa0674560 | 0.807364 | 5.241761e-50 | -8.615850e-47 |
| Msa0278450 | Msa0738240 | 0.802741 | 4.857480e-49 | -8.615850e-47 |
| Msa0278450 | Msa1071180 | -0.807226 | 5.604950e-50 | -8.615850e-47 |
| Msa0278450 | Msa1145540 | 0.807042 | 6.132467e-50 | -8.615850e-47 |
| Msa0278450 | Msa1155170 | -0.801662 | 8.100571e-49 | -8.615850e-47 |
| Msa0278450 | Msa1170350 | 0.951298 | 2.742328e-109 | -8.615850e-47 |
| Msa0278450 | Msa1186020 | 0.808227 | 3.434573e-50 | -8.615850e-47 |
| Msa0278450 | Msa1236160 | -0.815551 | 8.723207e-52 | -8.615850e-47 |
| Msa0278450 | Msa1320670 | 0.845746 | 3.350556e-59 | -8.615850e-47 |
| Msa0278450 | Msa1341840 | 0.800812 | 1.209172e-48 | -8.615850e-47 |
| Msa0278450 | Msa1345810 | 0.841237 | 5.366284e-58 | -8.615850e-47 |
| Msa0278450 | Msa1392580 | 0.816431 | 5.551249e-52 | -8.615850e-47 |
| Msa0278450 | Msa1393840 | -0.801974 | 6.988505e-49 | -8.615850e-47 |
| Msa0278450 | Msa1397400 | 0.810455 | 1.142978e-50 | -8.615850e-47 |
| Msa0278450 | Msa1441270 | 0.805709 | 1.171131e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0278450 | MtrunA17_Chr2g0291491 | 90.468 | 577 | 25 | 2 | 1 | 549 | 1 | 575 | 0.0 | 1025 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0278450 | AT3G54630.1 | 43.284 | 536 | 270 | 6 | 24 | 531 | 33 | 562 | 1.86e-145 | 431 |
Find 147 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAACAATAATATTCTATT+TGG | 0.158248 | 2_3:-11455212 | Msa0278450:CDS |
| ATTGATTTATTAAGTTTAAA+AGG | 0.160827 | 2_3:+11455356 | None:intergenic |
| GGAGTTCGGTGAGGAAAATT+AGG | 0.203771 | 2_3:+11455441 | None:intergenic |
| TGGAAGGTAGGAAGTGTCTT+TGG | 0.259688 | 2_3:+11455673 | None:intergenic |
| CATAAGATAATTGAGGAGTT+TGG | 0.260608 | 2_3:-11454948 | Msa0278450:CDS |
| TTGGCGACGGTGGGTGGCGG+TGG | 0.276135 | 2_3:+11455697 | None:intergenic |
| GAGAAGTTCGGTGGTGAAAT+TGG | 0.292249 | 2_3:-11454126 | Msa0278450:CDS |
| TGAGCCGTTGGAGAGGGTTT+TGG | 0.311584 | 2_3:-11454916 | Msa0278450:CDS |
| ATGAATACACGAGCAAAATA+TGG | 0.313368 | 2_3:+11451999 | None:intergenic |
| ATAAGATAATTGAGGAGTTT+GGG | 0.338703 | 2_3:-11454947 | Msa0278450:CDS |
| TTCAGCAGGCGTGGTTCCCT+TGG | 0.339122 | 2_3:+11454214 | None:intergenic |
| GGAAGGTAGGAAGTGTCTTT+GGG | 0.347036 | 2_3:+11455674 | None:intergenic |
| GGCCATTGATGCGGGGTAGC+AGG | 0.360117 | 2_3:+11455323 | None:intergenic |
| CAATGCTTTGTCTTATTCAC+TGG | 0.360486 | 2_3:-11455298 | Msa0278450:CDS |
| TGATCATGATGTGGGCATTA+TGG | 0.365375 | 2_3:-11453229 | Msa0278450:CDS |
| GTCTGTTGCTGAGGAGAAAC+TGG | 0.366375 | 2_3:-11455093 | Msa0278450:CDS |
| TGACGAGGCTATTCTTGATA+TGG | 0.379772 | 2_3:-11455150 | Msa0278450:CDS |
| GTCTTTGGGTTGGCGACGGT+GGG | 0.391931 | 2_3:+11455688 | None:intergenic |
| GAGTTCGGTGAGGAAAATTA+GGG | 0.399786 | 2_3:+11455442 | None:intergenic |
| TGGTTGAGAGGGGTTGGTGG+TGG | 0.400749 | 2_3:+11455653 | None:intergenic |
| TTAGATTGAAGGCACAATAC+TGG | 0.401443 | 2_3:-11451907 | Msa0278450:intron |
| GTCCGACATCTTCTTAGCTT+CGG | 0.401875 | 2_3:+11453266 | None:intergenic |
| GCATCTTTACATCAAATTGA+TGG | 0.403182 | 2_3:+11451970 | None:intergenic |
| GGCATCTGAATTGAAGTTGC+AGG | 0.406818 | 2_3:-11452508 | Msa0278450:CDS |
| TTGAAGAGTTTGAGAAGTAA+AGG | 0.409288 | 2_3:+11455383 | None:intergenic |
| GGGTTGGCGACGGTGGGTGG+CGG | 0.420965 | 2_3:+11455694 | None:intergenic |
| TGAATAAGACAAAGCATTGA+AGG | 0.425794 | 2_3:+11455302 | None:intergenic |
| TGTTGAGTTGGAGGCGCAAT+TGG | 0.435358 | 2_3:-11455051 | Msa0278450:CDS |
| TCACTAGCTGGAAACTCAAA+TGG | 0.437352 | 2_3:-11453334 | Msa0278450:intron |
| CGGAACTTGCTAGGAATGCT+TGG | 0.439222 | 2_3:-11454731 | Msa0278450:CDS |
| AGGGGTTGGTGGTGGAAGGT+AGG | 0.444653 | 2_3:+11455661 | None:intergenic |
| TGAGAAAGAGAAGGGTGTGT+TGG | 0.446077 | 2_3:-11454991 | Msa0278450:CDS |
| TTGATTTATTAAGTTTAAAA+GGG | 0.447323 | 2_3:+11455357 | None:intergenic |
| TGCGATTGCGGATTGTTGAT+AGG | 0.448386 | 2_3:+11455550 | None:intergenic |
| GAAATTGTGAGAGGCGAGGA+AGG | 0.448991 | 2_3:+11455517 | None:intergenic |
| AACCACGCCTGCTGAAATCA+TGG | 0.451028 | 2_3:-11454207 | Msa0278450:CDS |
| TACGTGCATCATTAGATTGA+AGG | 0.458764 | 2_3:-11451918 | Msa0278450:three_prime_UTR |
| TGAGAGGGGTTGGTGGTGGA+AGG | 0.460898 | 2_3:+11455657 | None:intergenic |
| GAATGTGGTTAATTGAAAGT+AGG | 0.462877 | 2_3:-11452093 | Msa0278450:three_prime_UTR |
| GAATGTGGTTAATTGAAAGT+AGG | 0.462877 | 2_3:-11452184 | Msa0278450:three_prime_UTR |
| TGTGCTTCTAGGTTGAAGAT+TGG | 0.463038 | 2_3:-11454263 | Msa0278450:intron |
| GGCGGAGAAGGAGAAGCAAT+TGG | 0.464127 | 2_3:-11454895 | Msa0278450:CDS |
| TCAGCAGGCGTGGTTCCCTT+GGG | 0.464966 | 2_3:+11454215 | None:intergenic |
| AACGGGAAATTCAAGGAGTT+CGG | 0.466119 | 2_3:+11455427 | None:intergenic |
| ACCCTGCTACCCCGCATCAA+TGG | 0.472909 | 2_3:-11455325 | Msa0278450:CDS |
| TGTCTTTGGGTTGGCGACGG+TGG | 0.473790 | 2_3:+11455687 | None:intergenic |
| AGAGGCGAGGAAGGAGTTGA+TGG | 0.475835 | 2_3:+11455526 | None:intergenic |
| GAGGGGATTCCGACGGAGGA+AGG | 0.476947 | 2_3:+11455596 | None:intergenic |
| TGAGGAAAATTAGGGTTTCG+TGG | 0.477520 | 2_3:+11455450 | None:intergenic |
| TCGCGGTGGTTGAGAGGGGT+TGG | 0.479818 | 2_3:+11455647 | None:intergenic |
| TCGACGAATTCGAGAGAGAT+AGG | 0.483008 | 2_3:+11455252 | None:intergenic |
| GCATTGAAGGCCATTGATGC+GGG | 0.484798 | 2_3:+11455315 | None:intergenic |
| TGGCGACGGTGGGTGGCGGT+GGG | 0.488231 | 2_3:+11455698 | None:intergenic |
| GGTGGTGAAATTGGAAGAGT+TGG | 0.490182 | 2_3:-11454117 | Msa0278450:CDS |
| CGGAATCGCGGTGGTTGAGA+GGG | 0.491653 | 2_3:+11455642 | None:intergenic |
| CGGTGGTTGAGAGGGGTTGG+TGG | 0.491912 | 2_3:+11455650 | None:intergenic |
| TTTGGGTTGGCGACGGTGGG+TGG | 0.492725 | 2_3:+11455691 | None:intergenic |
| GGATGTGGAGAGGATGAAGA+AGG | 0.500189 | 2_3:-11454787 | Msa0278450:CDS |
| TGGGTCAAGGATTGAGCCGT+TGG | 0.504005 | 2_3:-11454928 | Msa0278450:CDS |
| TCGTGGATTTGTTTAGCGGA+AGG | 0.505891 | 2_3:+11455467 | None:intergenic |
| GGAGAAGCAATTGGAGGCGA+AGG | 0.507967 | 2_3:-11454886 | Msa0278450:CDS |
| GCAATTGGAGGCGAAGGTGG+TGG | 0.508621 | 2_3:-11454880 | Msa0278450:CDS |
| GCAAACTGTTGTTGAGTTGG+AGG | 0.509033 | 2_3:-11455060 | Msa0278450:CDS |
| GAGATCCGCGCCGTCTAAGA+AGG | 0.509647 | 2_3:-11455021 | Msa0278450:CDS |
| TCAAGCTCATCCTTCTTAGA+CGG | 0.509935 | 2_3:+11455011 | None:intergenic |
| CTGGTGAGGCGGAACTTGCT+AGG | 0.511152 | 2_3:-11454740 | Msa0278450:CDS |
| GAGGATTGTTGAGGAGAATG+AGG | 0.511952 | 2_3:-11454850 | Msa0278450:CDS |
| CACGCTGTTGAGAGGGATGC+TGG | 0.512009 | 2_3:-11454759 | Msa0278450:CDS |
| AGCAGCCGCCCTTCCTCCGT+CGG | 0.512411 | 2_3:-11455605 | Msa0278450:CDS |
| GTCTTTGTAAAGGTCGAATG+AGG | 0.513877 | 2_3:+11455577 | None:intergenic |
| CGAAGGTGGTGGAGAATGAG+AGG | 0.518233 | 2_3:-11454869 | Msa0278450:CDS |
| AGGGGATTCCGACGGAGGAA+GGG | 0.518465 | 2_3:+11455597 | None:intergenic |
| TGAGTTGGAGGCGCAATTGG+AGG | 0.523011 | 2_3:-11455048 | Msa0278450:CDS |
| GATAGGAACGGTCTTTGTAA+AGG | 0.523078 | 2_3:+11455567 | None:intergenic |
| TGAGCAAACTGTTGTTGAGT+TGG | 0.525689 | 2_3:-11455063 | Msa0278450:CDS |
| AAAATATAGTTATATATTGG+AGG | 0.526340 | 2_3:-11452310 | Msa0278450:CDS |
| TCAGCATAGGATTCAAGCAC+AGG | 0.527543 | 2_3:+11454158 | None:intergenic |
| GGAACTTGCTAGGAATGCTT+GGG | 0.527690 | 2_3:-11454730 | Msa0278450:CDS |
| CTCAAAGTATAAAGAACATG+TGG | 0.527765 | 2_3:-11452415 | Msa0278450:CDS |
| GCCATTGATGCGGGGTAGCA+GGG | 0.530312 | 2_3:+11455324 | None:intergenic |
| GTGGATTTGTTTAGCGGAAG+GGG | 0.530909 | 2_3:+11455469 | None:intergenic |
| GGATGAGCTTGAGAAAGAGA+AGG | 0.531000 | 2_3:-11455000 | Msa0278450:CDS |
| AAGTGTCTTTGGGTTGGCGA+CGG | 0.533107 | 2_3:+11455684 | None:intergenic |
| CCACATCATGATCAGCTAGC+TGG | 0.533202 | 2_3:+11453238 | None:intergenic |
| CGTGGATTTGTTTAGCGGAA+GGG | 0.535425 | 2_3:+11455468 | None:intergenic |
| GGTTTCGTGGATTTGTTTAG+CGG | 0.537126 | 2_3:+11455463 | None:intergenic |
| TCTCTTGATGTCATCAGCAT+AGG | 0.537512 | 2_3:+11454145 | None:intergenic |
| GATGAGCTTGAGAAAGAGAA+GGG | 0.537514 | 2_3:-11454999 | Msa0278450:CDS |
| TCAAAACCCATGATTTCAGC+AGG | 0.541601 | 2_3:+11454200 | None:intergenic |
| GGAGTTGATGGTTGCGATTG+CGG | 0.543181 | 2_3:+11455538 | None:intergenic |
| TCGGAATCGCGGTGGTTGAG+AGG | 0.548735 | 2_3:+11455641 | None:intergenic |
| AAGGATTGAGCCGTTGGAGA+GGG | 0.549405 | 2_3:-11454922 | Msa0278450:CDS |
| TAAGTTTCATAAGATAATTG+AGG | 0.549470 | 2_3:-11454955 | Msa0278450:CDS |
| TGATGACATCAAGAGAAGTT+CGG | 0.549998 | 2_3:-11454138 | Msa0278450:CDS |
| GTTGGAGGCGCAATTGGAGG+AGG | 0.550019 | 2_3:-11455045 | Msa0278450:CDS |
| GAGAAGATTTGAAAGAGATG+TGG | 0.554044 | 2_3:+11455495 | None:intergenic |
| TGAGGAGCTTAAGACGAAAG+TGG | 0.557541 | 2_3:-11454832 | Msa0278450:CDS |
| ACCCATGATTTCAGCAGGCG+TGG | 0.557805 | 2_3:+11454205 | None:intergenic |
| ATTTGTTTAGCGGAAGGGGA+AGG | 0.562432 | 2_3:+11455473 | None:intergenic |
| GGTAGGAAGTGTCTTTGGGT+TGG | 0.569598 | 2_3:+11455678 | None:intergenic |
| AGCATTGAAGGCCATTGATG+CGG | 0.572473 | 2_3:+11455314 | None:intergenic |
| AAAGAGAAGGGTGTGTTGGA+AGG | 0.573060 | 2_3:-11454987 | Msa0278450:CDS |
| GGATTCCGACGGAGGAAGGG+CGG | 0.574947 | 2_3:+11455600 | None:intergenic |
| TCAGTATGTGTTGAATCCCA+AGG | 0.575703 | 2_3:-11454231 | Msa0278450:CDS |
| TCATGAGAAGTCTGTTGCTG+AGG | 0.576689 | 2_3:-11455102 | Msa0278450:CDS |
| CGAGGCTATTCTTGATATGG+AGG | 0.579105 | 2_3:-11455147 | Msa0278450:CDS |
| GAGCAAAATATGGAGCTGAA+TGG | 0.581103 | 2_3:+11452009 | None:intergenic |
| TCTTTGTAAAGGTCGAATGA+GGG | 0.585965 | 2_3:+11455578 | None:intergenic |
| GCTGCTGACGAGACTGATGT+CGG | 0.586008 | 2_3:+11455622 | None:intergenic |
| GAAGCAATTGGAGGCGAAGG+TGG | 0.589483 | 2_3:-11454883 | Msa0278450:CDS |
| TAATTGAGGAGTTTGGGTCA+AGG | 0.591021 | 2_3:-11454941 | Msa0278450:CDS |
| TGTGGAAATTGTGAGAGGCG+AGG | 0.592842 | 2_3:+11455513 | None:intergenic |
| GGAGTTGCACGCTGTTGAGA+GGG | 0.593133 | 2_3:-11454766 | Msa0278450:CDS |
| ACCACGCCTGCTGAAATCAT+GGG | 0.594180 | 2_3:-11454206 | Msa0278450:CDS |
| AGGAGTTGCACGCTGTTGAG+AGG | 0.594789 | 2_3:-11454767 | Msa0278450:CDS |
| CCAGCTAGCTGATCATGATG+TGG | 0.595217 | 2_3:-11453238 | Msa0278450:CDS |
| GAAGAAATTCAAATGCATGC+CGG | 0.605310 | 2_3:-11452465 | Msa0278450:CDS |
| TTGCGGATTGTTGATAGGAA+CGG | 0.605871 | 2_3:+11455555 | None:intergenic |
| GGAGAAGGAGAAGCAATTGG+AGG | 0.606698 | 2_3:-11454892 | Msa0278450:CDS |
| TGTTGAGAGGGATGCTGGTG+AGG | 0.608981 | 2_3:-11454754 | Msa0278450:CDS |
| CAAGGATTGAGCCGTTGGAG+AGG | 0.615648 | 2_3:-11454923 | Msa0278450:CDS |
| AAAGTTTCAGAGATTAGAAG+CGG | 0.616241 | 2_3:-11452387 | Msa0278450:CDS |
| GGAATCGCGGTGGTTGAGAG+GGG | 0.616778 | 2_3:+11455643 | None:intergenic |
| AGTCCGCTGAAAATGCTGCT+AGG | 0.618268 | 2_3:-11454079 | Msa0278450:CDS |
| AAGTTTCAGAGATTAGAAGC+GGG | 0.618896 | 2_3:-11452386 | Msa0278450:CDS |
| CTTTGTAAAGGTCGAATGAG+GGG | 0.618950 | 2_3:+11455579 | None:intergenic |
| ACTTGCTAGGAATGCTTGGG+AGG | 0.620037 | 2_3:-11454727 | Msa0278450:CDS |
| TATGGAAAGAGAGGCAGCTG+AGG | 0.628545 | 2_3:-11453211 | Msa0278450:CDS |
| CAGTATGTGTTGAATCCCAA+GGG | 0.630232 | 2_3:-11454230 | Msa0278450:CDS |
| CATGATAAAGAAAGAAACAC+AGG | 0.630583 | 2_3:-11453310 | Msa0278450:CDS |
| CTCATCCTTCTTAGACGGCG+CGG | 0.632977 | 2_3:+11455016 | None:intergenic |
| TCAAAGTATAAAGAACATGT+GGG | 0.633300 | 2_3:-11452414 | Msa0278450:CDS |
| CAGCTAGCTGATCATGATGT+GGG | 0.635721 | 2_3:-11453237 | Msa0278450:CDS |
| TGTGGGCATTATGGAAAGAG+AGG | 0.640887 | 2_3:-11453220 | Msa0278450:CDS |
| GAATGAGGGGATTCCGACGG+AGG | 0.648475 | 2_3:+11455592 | None:intergenic |
| CGAGACTGATGTCGGAATCG+CGG | 0.650272 | 2_3:+11455630 | None:intergenic |
| TTAATGCGAGGGATGTGGAG+AGG | 0.655098 | 2_3:-11454797 | Msa0278450:CDS |
| TCCGCCAAAACCCTCTCCAA+CGG | 0.655375 | 2_3:+11454912 | None:intergenic |
| GTCGAATGAGGGGATTCCGA+CGG | 0.660588 | 2_3:+11455589 | None:intergenic |
| GACTGATGTCGGAATCGCGG+TGG | 0.661612 | 2_3:+11455633 | None:intergenic |
| TGCCGAAGCTAAGAAGATGT+CGG | 0.664082 | 2_3:-11453268 | Msa0278450:CDS |
| GGAGAATGAGAGGATTGTTG+AGG | 0.664358 | 2_3:-11454859 | Msa0278450:CDS |
| CATTGAAGGCCATTGATGCG+GGG | 0.679311 | 2_3:+11455316 | None:intergenic |
| TGAGAGGGATGCTGGTGAGG+CGG | 0.679707 | 2_3:-11454751 | Msa0278450:CDS |
| TGACATCAAGAGAAGTTCGG+TGG | 0.704206 | 2_3:-11454135 | Msa0278450:CDS |
| AGAGATGTGGAAATTGTGAG+AGG | 0.708472 | 2_3:+11455508 | None:intergenic |
| GAAATTCAAGGAGTTCGGTG+AGG | 0.740280 | 2_3:+11455432 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAATAATATTAATAAT+AGG | - | chr2_3:11453788-11453807 | Msa0278450:intron | 0.0% |
| !! | TTGATTTATTAAGTTTAAAA+GGG | + | chr2_3:11452076-11452095 | None:intergenic | 10.0% |
| !!! | ATTGATTTATTAAGTTTAAA+AGG | + | chr2_3:11452077-11452096 | None:intergenic | 10.0% |
| !!! | AATTATCTTAATTTTATTAG+AGG | - | chr2_3:11452254-11452273 | Msa0278450:three_prime_UTR | 10.0% |
| !! | AAAATTAAAATGCTATTAAA+AGG | - | chr2_3:11453904-11453923 | Msa0278450:intron | 10.0% |
| !!! | ATATATAACTATATTTTTCT+GGG | + | chr2_3:11455117-11455136 | None:intergenic | 10.0% |
| !!! | AATATATAACTATATTTTTC+TGG | + | chr2_3:11455118-11455137 | None:intergenic | 10.0% |
| !! | AGAAAAATATAGTTATATAT+TGG | - | chr2_3:11455117-11455136 | Msa0278450:CDS | 10.0% |
| !! | CATAACAATAATATTCTATT+TGG | - | chr2_3:11452218-11452237 | Msa0278450:three_prime_UTR | 15.0% |
| !! | ACAAATGATTATAATACAAA+CGG | + | chr2_3:11452854-11452873 | None:intergenic | 15.0% |
| !!! | AGCATTTTAATTTTGTTTTT+CGG | + | chr2_3:11453898-11453917 | None:intergenic | 15.0% |
| !!! | TTGTGTTTCAATTATTTTTT+TGG | - | chr2_3:11454499-11454518 | Msa0278450:intron | 15.0% |
| !! | AAAATATAGTTATATATTGG+AGG | - | chr2_3:11455120-11455139 | Msa0278450:CDS | 15.0% |
| !! | GTATACAAATATATTCTATT+TGG | - | chr2_3:11455577-11455596 | Msa0278450:CDS | 15.0% |
| !! | TAAGTTTCATAAGATAATTG+AGG | - | chr2_3:11452475-11452494 | Msa0278450:CDS | 20.0% |
| !! | ATAATCAATCTAAGAAAACT+AGG | + | chr2_3:11453511-11453530 | None:intergenic | 20.0% |
| !! | AAAAAATCCAAAAACTAAAC+TGG | + | chr2_3:11454450-11454469 | None:intergenic | 20.0% |
| !! | TAGTAAATGATAATCAAACT+GGG | - | chr2_3:11454643-11454662 | Msa0278450:intron | 20.0% |
| !!! | AACTTTTTATATTGTTGTCA+AGG | - | chr2_3:11454901-11454920 | Msa0278450:CDS | 20.0% |
| !! | AATCAACTTAAAAAGTTTAC+CGG | + | chr2_3:11454987-11455006 | None:intergenic | 20.0% |
| !!! | ATTCAATTCTCTGAATTTTA+CGG | + | chr2_3:11455150-11455169 | None:intergenic | 20.0% |
| !!! | CTTTTAAATATGAATGAATG+TGG | - | chr2_3:11455231-11455250 | Msa0278450:CDS | 20.0% |
| !!! | AAAGTAGGTTTTTTAGTATT+GGG | - | chr2_3:11455261-11455280 | Msa0278450:CDS | 20.0% |
| !!! | CTTTTAAATATGAATGAATG+TGG | - | chr2_3:11455231-11455250 | Msa0278450:CDS | 20.0% |
| !!! | AAAGTAGGTTTTTTAGTATT+GGG | - | chr2_3:11455261-11455280 | Msa0278450:CDS | 20.0% |
| !! | TAAAAAGAATGTTCAAATGA+AGG | + | chr2_3:11455631-11455650 | None:intergenic | 20.0% |
| ! | ATAAGATAATTGAGGAGTTT+GGG | - | chr2_3:11452483-11452502 | Msa0278450:CDS | 25.0% |
| ! | AGAAAAAAAAAACCTCCTAA+GGG | + | chr2_3:11452807-11452826 | None:intergenic | 25.0% |
| ! | AAGAAAAAAAAAACCTCCTA+AGG | + | chr2_3:11452808-11452827 | None:intergenic | 25.0% |
| ! | TACAAAATGTTGTCAAATAG+TGG | - | chr2_3:11452944-11452963 | Msa0278450:intron | 25.0% |
| ! | CTTGTGTGTTAATGTTAATA+GGG | - | chr2_3:11453114-11453133 | Msa0278450:intron | 25.0% |
| ! | GTTACTTAAACTATGTACTT+TGG | + | chr2_3:11453820-11453839 | None:intergenic | 25.0% |
| ! | ACATAAACATTGTCAGAAAA+GGG | + | chr2_3:11453975-11453994 | None:intergenic | 25.0% |
| ! | AACATAAACATTGTCAGAAA+AGG | + | chr2_3:11453976-11453995 | None:intergenic | 25.0% |
| ! | AGTTGTATTTGAACCAAATT+GGG | - | chr2_3:11454291-11454310 | Msa0278450:intron | 25.0% |
| ! | AATTGAAACACAAGATCAAT+GGG | + | chr2_3:11454492-11454511 | None:intergenic | 25.0% |
| ! | TAATTGAAACACAAGATCAA+TGG | + | chr2_3:11454493-11454512 | None:intergenic | 25.0% |
| ! | AAGAATATGAGTGCATAATT+TGG | - | chr2_3:11454539-11454558 | Msa0278450:intron | 25.0% |
| ! | CAGTTTGATTATCATTTACT+AGG | + | chr2_3:11454644-11454663 | None:intergenic | 25.0% |
| ! | CTAGTAAATGATAATCAAAC+TGG | - | chr2_3:11454642-11454661 | Msa0278450:intron | 25.0% |
| ! | ACAATGTTGTCACATAAATT+GGG | + | chr2_3:11454873-11454892 | None:intergenic | 25.0% |
| ! | TACAATGTTGTCACATAAAT+TGG | + | chr2_3:11454874-11454893 | None:intergenic | 25.0% |
| ! | TCAAAGTATAAAGAACATGT+GGG | - | chr2_3:11455016-11455035 | Msa0278450:CDS | 25.0% |
| !!! | GAAAGTAGGTTTTTTAGTAT+TGG | - | chr2_3:11455260-11455279 | Msa0278450:CDS | 25.0% |
| !!! | GAAAGTAGGTTTTTTAGTAT+TGG | - | chr2_3:11455260-11455279 | Msa0278450:CDS | 25.0% |
| !! | TTTTTGTAACGGGAAATTCA+AGG | + | chr2_3:11452013-11452032 | None:intergenic | 30.0% |
| ! | ATCGTCTTCGATTTTTGTAA+CGG | + | chr2_3:11452024-11452043 | None:intergenic | 30.0% |
| TTGAAGAGTTTGAGAAGTAA+AGG | + | chr2_3:11452050-11452069 | None:intergenic | 30.0% | |
| !! | TGAATAAGACAAAGCATTGA+AGG | + | chr2_3:11452131-11452150 | None:intergenic | 30.0% |
| CATAAGATAATTGAGGAGTT+TGG | - | chr2_3:11452482-11452501 | Msa0278450:CDS | 30.0% | |
| TATCTCAAAACAATAGCGTT+TGG | + | chr2_3:11452909-11452928 | None:intergenic | 30.0% | |
| TCAAATAGTGGTTGTTATAG+TGG | - | chr2_3:11452956-11452975 | Msa0278450:intron | 30.0% | |
| GCTTGTGTGTTAATGTTAAT+AGG | - | chr2_3:11453113-11453132 | Msa0278450:intron | 30.0% | |
| ATTATTTAAACATTGTCGCG+TGG | + | chr2_3:11453776-11453795 | None:intergenic | 30.0% | |
| TTAAACTATGTACTTTGGAC+TGG | + | chr2_3:11453815-11453834 | None:intergenic | 30.0% | |
| GTTTATGTTACACTCTTTGT+TGG | - | chr2_3:11453987-11454006 | Msa0278450:intron | 30.0% | |
| AACAAGCAGTAGAAAAGAAA+AGG | + | chr2_3:11454069-11454088 | None:intergenic | 30.0% | |
| !! | TTGTTGATTTATTCACTAGC+TGG | - | chr2_3:11454084-11454103 | Msa0278450:CDS | 30.0% |
| CATGATAAAGAAAGAAACAC+AGG | - | chr2_3:11454120-11454139 | Msa0278450:CDS | 30.0% | |
| !!! | GAGGTTTTAAAGGTAATATC+TGG | - | chr2_3:11454238-11454257 | Msa0278450:CDS | 30.0% |
| CAGTTGTATTTGAACCAAAT+TGG | - | chr2_3:11454290-11454309 | Msa0278450:intron | 30.0% | |
| GTTGTATTTGAACCAAATTG+GGG | - | chr2_3:11454292-11454311 | Msa0278450:intron | 30.0% | |
| TTGTATTTGAACCAAATTGG+GGG | - | chr2_3:11454293-11454312 | Msa0278450:intron | 30.0% | |
| TTATTGTGTTTCGATGAACT+TGG | - | chr2_3:11454378-11454397 | Msa0278450:intron | 30.0% | |
| AATATGCATTCCACATTGAT+TGG | - | chr2_3:11454413-11454432 | Msa0278450:intron | 30.0% | |
| AAGCTTGCAATAAAAAGGAA+TGG | + | chr2_3:11454614-11454633 | None:intergenic | 30.0% | |
| ! | TTCCTTTTTATTGCAAGCTT+TGG | - | chr2_3:11454614-11454633 | Msa0278450:intron | 30.0% |
| AATATCCATGTTGCTAAGTT+TGG | + | chr2_3:11454796-11454815 | None:intergenic | 30.0% | |
| ! | ATTGGGAAAGATTTAAAACG+AGG | + | chr2_3:11454856-11454875 | None:intergenic | 30.0% |
| CTCAAAGTATAAAGAACATG+TGG | - | chr2_3:11455015-11455034 | Msa0278450:CDS | 30.0% | |
| AAAGTTTCAGAGATTAGAAG+CGG | - | chr2_3:11455043-11455062 | Msa0278450:CDS | 30.0% | |
| GAATGTGGTTAATTGAAAGT+AGG | - | chr2_3:11455246-11455265 | Msa0278450:CDS | 30.0% | |
| GAATGTGGTTAATTGAAAGT+AGG | - | chr2_3:11455246-11455265 | Msa0278450:CDS | 30.0% | |
| ATGAATACACGAGCAAAATA+TGG | + | chr2_3:11455434-11455453 | None:intergenic | 30.0% | |
| GCATCTTTACATCAAATTGA+TGG | + | chr2_3:11455463-11455482 | None:intergenic | 30.0% | |
| TCTTTGTAAAGGTCGAATGA+GGG | + | chr2_3:11451855-11451874 | None:intergenic | 35.0% | |
| GAGAAGATTTGAAAGAGATG+TGG | + | chr2_3:11451938-11451957 | None:intergenic | 35.0% | |
| ! | TCGTCTTCGATTTTTGTAAC+GGG | + | chr2_3:11452023-11452042 | None:intergenic | 35.0% |
| ! | CAATGCTTTGTCTTATTCAC+TGG | - | chr2_3:11452132-11452151 | Msa0278450:three_prime_UTR | 35.0% |
| AAATTGCTGCTATAGTCTAG+CGG | - | chr2_3:11452875-11452894 | Msa0278450:intron | 35.0% | |
| GTTTCATTTCATGTGCTTCT+AGG | - | chr2_3:11453156-11453175 | Msa0278450:intron | 35.0% | |
| TGATGACATCAAGAGAAGTT+CGG | - | chr2_3:11453292-11453311 | Msa0278450:CDS | 35.0% | |
| GGATAAAGATTGATTGTGTG+TGG | - | chr2_3:11453563-11453582 | Msa0278450:intron | 35.0% | |
| GGGTAATGTTGTTGAATTGA+TGG | - | chr2_3:11453645-11453664 | Msa0278450:intron | 35.0% | |
| CAACAACAAGTATGAAACAC+AGG | + | chr2_3:11453677-11453696 | None:intergenic | 35.0% | |
| ACTCTTTGTTGGAGTTAGAA+GGG | - | chr2_3:11453998-11454017 | Msa0278450:intron | 35.0% | |
| GTCAAACAACAGTCTTTACA+AGG | + | chr2_3:11454047-11454066 | None:intergenic | 35.0% | |
| AAACTAAACTGGCACGAAAT+TGG | + | chr2_3:11454439-11454458 | None:intergenic | 35.0% | |
| !!! | TTTCGTGCCAGTTTAGTTTT+TGG | - | chr2_3:11454440-11454459 | Msa0278450:intron | 35.0% |
| TACGAAAAACATGCTAGATG+TGG | + | chr2_3:11454580-11454599 | None:intergenic | 35.0% | |
| AGCCAAAGCTTGCAATAAAA+AGG | + | chr2_3:11454619-11454638 | None:intergenic | 35.0% | |
| TGTAGTAACGAGTTAGTTCA+AGG | - | chr2_3:11454749-11454768 | Msa0278450:CDS | 35.0% | |
| GTAGTAACGAGTTAGTTCAA+GGG | - | chr2_3:11454750-11454769 | Msa0278450:CDS | 35.0% | |
| TGGAGATAGTTTAAGCTTGA+TGG | + | chr2_3:11454776-11454795 | None:intergenic | 35.0% | |
| TATCTCCAAACTTAGCAACA+TGG | - | chr2_3:11454788-11454807 | Msa0278450:CDS | 35.0% | |
| GAAGAAATTCAAATGCATGC+CGG | - | chr2_3:11454965-11454984 | Msa0278450:CDS | 35.0% | |
| AAGTTTCAGAGATTAGAAGC+GGG | - | chr2_3:11455044-11455063 | Msa0278450:CDS | 35.0% | |
| TACGTGCATCATTAGATTGA+AGG | - | chr2_3:11455512-11455531 | Msa0278450:CDS | 35.0% | |
| ! | TTAGATTGAAGGCACAATAC+TGG | - | chr2_3:11455523-11455542 | Msa0278450:CDS | 35.0% |
| CTTTGTAAAGGTCGAATGAG+GGG | + | chr2_3:11451854-11451873 | None:intergenic | 40.0% | |
| GTCTTTGTAAAGGTCGAATG+AGG | + | chr2_3:11451856-11451875 | None:intergenic | 40.0% | |
| GATAGGAACGGTCTTTGTAA+AGG | + | chr2_3:11451866-11451885 | None:intergenic | 40.0% | |
| ! | TTGCGGATTGTTGATAGGAA+CGG | + | chr2_3:11451878-11451897 | None:intergenic | 40.0% |
| AGAGATGTGGAAATTGTGAG+AGG | + | chr2_3:11451925-11451944 | None:intergenic | 40.0% | |
| ! | GGTTTCGTGGATTTGTTTAG+CGG | + | chr2_3:11451970-11451989 | None:intergenic | 40.0% |
| TGAGGAAAATTAGGGTTTCG+TGG | + | chr2_3:11451983-11452002 | None:intergenic | 40.0% | |
| ! | GAGTTCGGTGAGGAAAATTA+GGG | + | chr2_3:11451991-11452010 | None:intergenic | 40.0% |
| AACGGGAAATTCAAGGAGTT+CGG | + | chr2_3:11452006-11452025 | None:intergenic | 40.0% | |
| ! | TTTTATTAGAGGCGATGACG+AGG | - | chr2_3:11452265-11452284 | Msa0278450:exon | 40.0% |
| TGACGAGGCTATTCTTGATA+TGG | - | chr2_3:11452280-11452299 | Msa0278450:exon | 40.0% | |
| TGAGCAAACTGTTGTTGAGT+TGG | - | chr2_3:11452367-11452386 | Msa0278450:CDS | 40.0% | |
| TCAAGCTCATCCTTCTTAGA+CGG | + | chr2_3:11452422-11452441 | None:intergenic | 40.0% | |
| GATGAGCTTGAGAAAGAGAA+GGG | - | chr2_3:11452431-11452450 | Msa0278450:CDS | 40.0% | |
| TAATTGAGGAGTTTGGGTCA+AGG | - | chr2_3:11452489-11452508 | Msa0278450:CDS | 40.0% | |
| ! | AGTTGCAGACTTTTAATGCG+AGG | - | chr2_3:11452621-11452640 | Msa0278450:intron | 40.0% |
| ! | GTTGCAGACTTTTAATGCGA+GGG | - | chr2_3:11452622-11452641 | Msa0278450:intron | 40.0% |
| GCATAAGATCAAAGACTTGG+AGG | - | chr2_3:11452757-11452776 | Msa0278450:intron | 40.0% | |
| AAAAAAACCTCCTAAGGGCA+TGG | + | chr2_3:11452802-11452821 | None:intergenic | 40.0% | |
| !!! | TGCTATAGTCTAGCGGATTT+TGG | - | chr2_3:11452882-11452901 | Msa0278450:intron | 40.0% |
| ! | TGTGCTTCTAGGTTGAAGAT+TGG | - | chr2_3:11453167-11453186 | Msa0278450:intron | 40.0% |
| TCAGTATGTGTTGAATCCCA+AGG | - | chr2_3:11453199-11453218 | Msa0278450:intron | 40.0% | |
| CAGTATGTGTTGAATCCCAA+GGG | - | chr2_3:11453200-11453219 | Msa0278450:intron | 40.0% | |
| TCAAAACCCATGATTTCAGC+AGG | + | chr2_3:11453233-11453252 | None:intergenic | 40.0% | |
| TCTCTTGATGTCATCAGCAT+AGG | + | chr2_3:11453288-11453307 | None:intergenic | 40.0% | |
| !! | TTTCAGCGGACTTTTTCTGA+AGG | + | chr2_3:11453343-11453362 | None:intergenic | 40.0% |
| TGTGCTTGTGCTTTACATGA+AGG | - | chr2_3:11453477-11453496 | Msa0278450:intron | 40.0% | |
| ATGTACTGAGAGAGTGAGTT+TGG | - | chr2_3:11453542-11453561 | Msa0278450:intron | 40.0% | |
| TTCCACATTCTAATTCCTGC+AGG | + | chr2_3:11453615-11453634 | None:intergenic | 40.0% | |
| GTTGTTGTACTACTGTCTAC+TGG | - | chr2_3:11453690-11453709 | Msa0278450:intron | 40.0% | |
| TTGTCAGAAAAGGGAAGAGT+GGG | + | chr2_3:11453966-11453985 | None:intergenic | 40.0% | |
| ATTGTCAGAAAAGGGAAGAG+TGG | + | chr2_3:11453967-11453986 | None:intergenic | 40.0% | |
| CACTCTTTGTTGGAGTTAGA+AGG | - | chr2_3:11453997-11454016 | Msa0278450:intron | 40.0% | |
| TCACTAGCTGGAAACTCAAA+TGG | - | chr2_3:11454096-11454115 | Msa0278450:CDS | 40.0% | |
| TGATCATGATGTGGGCATTA+TGG | - | chr2_3:11454201-11454220 | Msa0278450:CDS | 40.0% | |
| TTGAACCAAATTGGGGGAAA+AGG | - | chr2_3:11454299-11454318 | Msa0278450:intron | 40.0% | |
| TTGTGTTTCGATGAACTTGG+AGG | - | chr2_3:11454381-11454400 | Msa0278450:intron | 40.0% | |
| TGTGTTTCGATGAACTTGGA+GGG | - | chr2_3:11454382-11454401 | Msa0278450:intron | 40.0% | |
| ACGAAATTGGCCAATCAATG+TGG | + | chr2_3:11454426-11454445 | None:intergenic | 40.0% | |
| !! | CTGGGAGTGTTGAAGAAAAA+AGG | - | chr2_3:11454661-11454680 | Msa0278450:intron | 40.0% |
| GAGCAAAATATGGAGCTGAA+TGG | + | chr2_3:11455424-11455443 | None:intergenic | 40.0% | |
| !! | GGAAGGTAGGAAGTGTCTTT+GGG | + | chr2_3:11451759-11451778 | None:intergenic | 45.0% |
| !! | TGGAAGGTAGGAAGTGTCTT+TGG | + | chr2_3:11451760-11451779 | None:intergenic | 45.0% |
| ! | TGCGATTGCGGATTGTTGAT+AGG | + | chr2_3:11451883-11451902 | None:intergenic | 45.0% |
| ATTTGTTTAGCGGAAGGGGA+AGG | + | chr2_3:11451960-11451979 | None:intergenic | 45.0% | |
| ! | GTGGATTTGTTTAGCGGAAG+GGG | + | chr2_3:11451964-11451983 | None:intergenic | 45.0% |
| ! | CGTGGATTTGTTTAGCGGAA+GGG | + | chr2_3:11451965-11451984 | None:intergenic | 45.0% |
| ! | TCGTGGATTTGTTTAGCGGA+AGG | + | chr2_3:11451966-11451985 | None:intergenic | 45.0% |
| ! | GGAGTTCGGTGAGGAAAATT+AGG | + | chr2_3:11451992-11452011 | None:intergenic | 45.0% |
| ! | GAAATTCAAGGAGTTCGGTG+AGG | + | chr2_3:11452001-11452020 | None:intergenic | 45.0% |
| ! | AGCATTGAAGGCCATTGATG+CGG | + | chr2_3:11452119-11452138 | None:intergenic | 45.0% |
| TCGACGAATTCGAGAGAGAT+AGG | + | chr2_3:11452181-11452200 | None:intergenic | 45.0% | |
| CGAGGCTATTCTTGATATGG+AGG | - | chr2_3:11452283-11452302 | Msa0278450:CDS | 45.0% | |
| TCATGAGAAGTCTGTTGCTG+AGG | - | chr2_3:11452328-11452347 | Msa0278450:CDS | 45.0% | |
| !! | GCAAACTGTTGTTGAGTTGG+AGG | - | chr2_3:11452370-11452389 | Msa0278450:CDS | 45.0% |
| GGATGAGCTTGAGAAAGAGA+AGG | - | chr2_3:11452430-11452449 | Msa0278450:CDS | 45.0% | |
| ! | TGAGAAAGAGAAGGGTGTGT+TGG | - | chr2_3:11452439-11452458 | Msa0278450:CDS | 45.0% |
| ! | AAAGAGAAGGGTGTGTTGGA+AGG | - | chr2_3:11452443-11452462 | Msa0278450:CDS | 45.0% |
| GGAGAATGAGAGGATTGTTG+AGG | - | chr2_3:11452571-11452590 | Msa0278450:intron | 45.0% | |
| GAGGATTGTTGAGGAGAATG+AGG | - | chr2_3:11452580-11452599 | Msa0278450:intron | 45.0% | |
| TGAGGAGCTTAAGACGAAAG+TGG | - | chr2_3:11452598-11452617 | Msa0278450:intron | 45.0% | |
| ! | GACTTTTAATGCGAGGGATG+TGG | - | chr2_3:11452628-11452647 | Msa0278450:intron | 45.0% |
| !! | GGAACTTGCTAGGAATGCTT+GGG | - | chr2_3:11452700-11452719 | Msa0278450:intron | 45.0% |
| ! | ATGCTTGGGAGGAAAAGTGT+TGG | - | chr2_3:11452714-11452733 | Msa0278450:intron | 45.0% |
| !! | TGCTTGGGAGGAAAAGTGTT+GGG | - | chr2_3:11452715-11452734 | Msa0278450:intron | 45.0% |
| CGCGCATAAGATCAAAGACT+TGG | - | chr2_3:11452754-11452773 | Msa0278450:intron | 45.0% | |
| ! | AAGGGCATGGTTGCAATCTA+TGG | + | chr2_3:11452789-11452808 | None:intergenic | 45.0% |
| TAGATTGCAACCATGCCCTT+AGG | - | chr2_3:11452789-11452808 | Msa0278450:intron | 45.0% | |
| CTAGTCAAGTGTGCACTGTT+TGG | - | chr2_3:11453060-11453079 | Msa0278450:intron | 45.0% | |
| TCAGCATAGGATTCAAGCAC+AGG | + | chr2_3:11453275-11453294 | None:intergenic | 45.0% | |
| TGACATCAAGAGAAGTTCGG+TGG | - | chr2_3:11453295-11453314 | Msa0278450:CDS | 45.0% | |
| ! | GAGAAGTTCGGTGGTGAAAT+TGG | - | chr2_3:11453304-11453323 | Msa0278450:CDS | 45.0% |
| GGTGGTGAAATTGGAAGAGT+TGG | - | chr2_3:11453313-11453332 | Msa0278450:CDS | 45.0% | |
| ! | AAGCCTAGCAGCATTTTCAG+CGG | + | chr2_3:11453357-11453376 | None:intergenic | 45.0% |
| TTGATTGTGTGTGGACAGTG+TGG | - | chr2_3:11453572-11453591 | Msa0278450:intron | 45.0% | |
| TAGAATGTGGAAGCTGATGC+AGG | - | chr2_3:11453623-11453642 | Msa0278450:intron | 45.0% | |
| AGAATGTGGAAGCTGATGCA+GGG | - | chr2_3:11453624-11453643 | Msa0278450:intron | 45.0% | |
| TGCCGAAGCTAAGAAGATGT+CGG | - | chr2_3:11454162-11454181 | Msa0278450:CDS | 45.0% | |
| GTCCGACATCTTCTTAGCTT+CGG | + | chr2_3:11454167-11454186 | None:intergenic | 45.0% | |
| CAGCTAGCTGATCATGATGT+GGG | - | chr2_3:11454193-11454212 | Msa0278450:CDS | 45.0% | |
| TGTGGGCATTATGGAAAGAG+AGG | - | chr2_3:11454210-11454229 | Msa0278450:CDS | 45.0% | |
| !! | AGAGGCAGCTGAGGTTTTAA+AGG | - | chr2_3:11454228-11454247 | Msa0278450:CDS | 45.0% |
| TGGGTAGCAACTAGCATCTT+AGG | + | chr2_3:11454473-11454492 | None:intergenic | 45.0% | |
| GGCATCTGAATTGAAGTTGC+AGG | - | chr2_3:11454922-11454941 | Msa0278450:CDS | 45.0% | |
| ! | GATTGAAGGCACAATACTGG+AGG | - | chr2_3:11455526-11455545 | Msa0278450:CDS | 45.0% |
| !! | AAGTGTCTTTGGGTTGGCGA+CGG | + | chr2_3:11451749-11451768 | None:intergenic | 50.0% |
| !! | GGTAGGAAGTGTCTTTGGGT+TGG | + | chr2_3:11451755-11451774 | None:intergenic | 50.0% |
| !! | GGAGTTGATGGTTGCGATTG+CGG | + | chr2_3:11451895-11451914 | None:intergenic | 50.0% |
| GAAATTGTGAGAGGCGAGGA+AGG | + | chr2_3:11451916-11451935 | None:intergenic | 50.0% | |
| TGTGGAAATTGTGAGAGGCG+AGG | + | chr2_3:11451920-11451939 | None:intergenic | 50.0% | |
| CATTGAAGGCCATTGATGCG+GGG | + | chr2_3:11452117-11452136 | None:intergenic | 50.0% | |
| GCATTGAAGGCCATTGATGC+GGG | + | chr2_3:11452118-11452137 | None:intergenic | 50.0% | |
| GTCTGTTGCTGAGGAGAAAC+TGG | - | chr2_3:11452337-11452356 | Msa0278450:CDS | 50.0% | |
| !! | TGTTGAGTTGGAGGCGCAAT+TGG | - | chr2_3:11452379-11452398 | Msa0278450:CDS | 50.0% |
| AAGGATTGAGCCGTTGGAGA+GGG | - | chr2_3:11452508-11452527 | Msa0278450:CDS | 50.0% | |
| GGAGAAGGAGAAGCAATTGG+AGG | - | chr2_3:11452538-11452557 | Msa0278450:intron | 50.0% | |
| TTAATGCGAGGGATGTGGAG+AGG | - | chr2_3:11452633-11452652 | Msa0278450:intron | 50.0% | |
| GGATGTGGAGAGGATGAAGA+AGG | - | chr2_3:11452643-11452662 | Msa0278450:intron | 50.0% | |
| !! | CGGAACTTGCTAGGAATGCT+TGG | - | chr2_3:11452699-11452718 | Msa0278450:intron | 50.0% |
| ! | ACTTGCTAGGAATGCTTGGG+AGG | - | chr2_3:11452703-11452722 | Msa0278450:intron | 50.0% |
| ATTGCAACCATGCCCTTAGG+AGG | - | chr2_3:11452792-11452811 | Msa0278450:intron | 50.0% | |
| AACCACGCCTGCTGAAATCA+TGG | - | chr2_3:11453223-11453242 | Msa0278450:CDS | 50.0% | |
| ACCACGCCTGCTGAAATCAT+GGG | - | chr2_3:11453224-11453243 | Msa0278450:CDS | 50.0% | |
| AGTCCGCTGAAAATGCTGCT+AGG | - | chr2_3:11453351-11453370 | Msa0278450:intron | 50.0% | |
| TGGACAGTGTGGTATCAGAG+TGG | - | chr2_3:11453583-11453602 | Msa0278450:intron | 50.0% | |
| GGCCTGCAGGAATTAGAATG+TGG | - | chr2_3:11453610-11453629 | Msa0278450:intron | 50.0% | |
| GAATGTGGAAGCTGATGCAG+GGG | - | chr2_3:11453625-11453644 | Msa0278450:intron | 50.0% | |
| GGAGTCAGAGGACAAGTACA+AGG | + | chr2_3:11453755-11453774 | None:intergenic | 50.0% | |
| CCACATCATGATCAGCTAGC+TGG | + | chr2_3:11454195-11454214 | None:intergenic | 50.0% | |
| CCAGCTAGCTGATCATGATG+TGG | - | chr2_3:11454192-11454211 | Msa0278450:CDS | 50.0% | |
| TATGGAAAGAGAGGCAGCTG+AGG | - | chr2_3:11454219-11454238 | Msa0278450:CDS | 50.0% | |
| ! | CAACGCCTTTTCCCCCAATT+TGG | + | chr2_3:11454307-11454326 | None:intergenic | 50.0% |
| ! | CAAATTGGGGGAAAAGGCGT+TGG | - | chr2_3:11454305-11454324 | Msa0278450:intron | 50.0% |
| CGAGACTGATGTCGGAATCG+CGG | + | chr2_3:11451803-11451822 | None:intergenic | 55.0% | |
| GCTGCTGACGAGACTGATGT+CGG | + | chr2_3:11451811-11451830 | None:intergenic | 55.0% | |
| GTCGAATGAGGGGATTCCGA+CGG | + | chr2_3:11451844-11451863 | None:intergenic | 55.0% | |
| AGAGGCGAGGAAGGAGTTGA+TGG | + | chr2_3:11451907-11451926 | None:intergenic | 55.0% | |
| ! | TGAGTTGGAGGCGCAATTGG+AGG | - | chr2_3:11452382-11452401 | Msa0278450:CDS | 55.0% |
| CTCATCCTTCTTAGACGGCG+CGG | + | chr2_3:11452417-11452436 | None:intergenic | 55.0% | |
| TGGGTCAAGGATTGAGCCGT+TGG | - | chr2_3:11452502-11452521 | Msa0278450:CDS | 55.0% | |
| CAAGGATTGAGCCGTTGGAG+AGG | - | chr2_3:11452507-11452526 | Msa0278450:CDS | 55.0% | |
| ! | TGAGCCGTTGGAGAGGGTTT+TGG | - | chr2_3:11452514-11452533 | Msa0278450:intron | 55.0% |
| TCCGCCAAAACCCTCTCCAA+CGG | + | chr2_3:11452521-11452540 | None:intergenic | 55.0% | |
| GGCGGAGAAGGAGAAGCAAT+TGG | - | chr2_3:11452535-11452554 | Msa0278450:intron | 55.0% | |
| GGAGAAGCAATTGGAGGCGA+AGG | - | chr2_3:11452544-11452563 | Msa0278450:intron | 55.0% | |
| GAAGCAATTGGAGGCGAAGG+TGG | - | chr2_3:11452547-11452566 | Msa0278450:intron | 55.0% | |
| !! | CGAAGGTGGTGGAGAATGAG+AGG | - | chr2_3:11452561-11452580 | Msa0278450:intron | 55.0% |
| AGGAGTTGCACGCTGTTGAG+AGG | - | chr2_3:11452663-11452682 | Msa0278450:intron | 55.0% | |
| GGAGTTGCACGCTGTTGAGA+GGG | - | chr2_3:11452664-11452683 | Msa0278450:intron | 55.0% | |
| TGTTGAGAGGGATGCTGGTG+AGG | - | chr2_3:11452676-11452695 | Msa0278450:intron | 55.0% | |
| ACCCATGATTTCAGCAGGCG+TGG | + | chr2_3:11453228-11453247 | None:intergenic | 55.0% | |
| GTGTGGTATCAGAGTGGTGC+TGG | - | chr2_3:11453589-11453608 | Msa0278450:intron | 55.0% | |
| ACATTGTCGCGTGGAGTCAG+AGG | + | chr2_3:11453767-11453786 | None:intergenic | 55.0% | |
| !! | GTCTTTGGGTTGGCGACGGT+GGG | + | chr2_3:11451745-11451764 | None:intergenic | 60.0% |
| !! | TGTCTTTGGGTTGGCGACGG+TGG | + | chr2_3:11451746-11451765 | None:intergenic | 60.0% |
| !! | AGGGGTTGGTGGTGGAAGGT+AGG | + | chr2_3:11451772-11451791 | None:intergenic | 60.0% |
| !! | TGAGAGGGGTTGGTGGTGGA+AGG | + | chr2_3:11451776-11451795 | None:intergenic | 60.0% |
| !! | TGGTTGAGAGGGGTTGGTGG+TGG | + | chr2_3:11451780-11451799 | None:intergenic | 60.0% |
| GGAATCGCGGTGGTTGAGAG+GGG | + | chr2_3:11451790-11451809 | None:intergenic | 60.0% | |
| CGGAATCGCGGTGGTTGAGA+GGG | + | chr2_3:11451791-11451810 | None:intergenic | 60.0% | |
| TCGGAATCGCGGTGGTTGAG+AGG | + | chr2_3:11451792-11451811 | None:intergenic | 60.0% | |
| GACTGATGTCGGAATCGCGG+TGG | + | chr2_3:11451800-11451819 | None:intergenic | 60.0% | |
| AGGGGATTCCGACGGAGGAA+GGG | + | chr2_3:11451836-11451855 | None:intergenic | 60.0% | |
| GAATGAGGGGATTCCGACGG+AGG | + | chr2_3:11451841-11451860 | None:intergenic | 60.0% | |
| ACCCTGCTACCCCGCATCAA+TGG | - | chr2_3:11452105-11452124 | Msa0278450:three_prime_UTR | 60.0% | |
| GCCATTGATGCGGGGTAGCA+GGG | + | chr2_3:11452109-11452128 | None:intergenic | 60.0% | |
| ! | GTTGGAGGCGCAATTGGAGG+AGG | - | chr2_3:11452385-11452404 | Msa0278450:CDS | 60.0% |
| GAGATCCGCGCCGTCTAAGA+AGG | - | chr2_3:11452409-11452428 | Msa0278450:CDS | 60.0% | |
| !! | GCCGTTGGAGAGGGTTTTGG+CGG | - | chr2_3:11452517-11452536 | Msa0278450:intron | 60.0% |
| !! | GGAGAGGGTTTTGGCGGAGA+AGG | - | chr2_3:11452523-11452542 | Msa0278450:intron | 60.0% |
| GCAATTGGAGGCGAAGGTGG+TGG | - | chr2_3:11452550-11452569 | Msa0278450:intron | 60.0% | |
| CACGCTGTTGAGAGGGATGC+TGG | - | chr2_3:11452671-11452690 | Msa0278450:intron | 60.0% | |
| TGAGAGGGATGCTGGTGAGG+CGG | - | chr2_3:11452679-11452698 | Msa0278450:intron | 60.0% | |
| ! | CTGGTGAGGCGGAACTTGCT+AGG | - | chr2_3:11452690-11452709 | Msa0278450:intron | 60.0% |
| TCAGCAGGCGTGGTTCCCTT+GGG | + | chr2_3:11453218-11453237 | None:intergenic | 60.0% | |
| TTCAGCAGGCGTGGTTCCCT+TGG | + | chr2_3:11453219-11453238 | None:intergenic | 60.0% | |
| !! | TTTGGGTTGGCGACGGTGGG+TGG | + | chr2_3:11451742-11451761 | None:intergenic | 65.0% |
| CGGTGGTTGAGAGGGGTTGG+TGG | + | chr2_3:11451783-11451802 | None:intergenic | 65.0% | |
| TCGCGGTGGTTGAGAGGGGT+TGG | + | chr2_3:11451786-11451805 | None:intergenic | 65.0% | |
| GGATTCCGACGGAGGAAGGG+CGG | + | chr2_3:11451833-11451852 | None:intergenic | 65.0% | |
| GAGGGGATTCCGACGGAGGA+AGG | + | chr2_3:11451837-11451856 | None:intergenic | 65.0% | |
| GGCCATTGATGCGGGGTAGC+AGG | + | chr2_3:11452110-11452129 | None:intergenic | 65.0% | |
| !! | TCAGAGTGGTGCTGGCCTGC+AGG | - | chr2_3:11453597-11453616 | Msa0278450:intron | 65.0% |
| AGCAGCCGCCCTTCCTCCGT+CGG | - | chr2_3:11451825-11451844 | Msa0278450:intron | 70.0% | |
| ! | TGGCGACGGTGGGTGGCGGT+GGG | + | chr2_3:11451735-11451754 | None:intergenic | 75.0% |
| ! | TTGGCGACGGTGGGTGGCGG+TGG | + | chr2_3:11451736-11451755 | None:intergenic | 75.0% |
| ! | GGGTTGGCGACGGTGGGTGG+CGG | + | chr2_3:11451739-11451758 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 11451723 | 11455729 | 11451723 | ID=Msa0278450;Name=Msa0278450 |
| chr2_3 | mRNA | 11451723 | 11455729 | 11451723 | ID=Msa0278450-mRNA-1;Parent=Msa0278450;Name=Msa0278450-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.75|0.8|1|0.75|0.6|5|440|549 |
| chr2_3 | exon | 11451723 | 11451791 | 11451723 | ID=Msa0278450-mRNA-1:exon:5175;Parent=Msa0278450-mRNA-1 |
| chr2_3 | exon | 11451910 | 11452529 | 11451910 | ID=Msa0278450-mRNA-1:exon:5174;Parent=Msa0278450-mRNA-1 |
| chr2_3 | exon | 11453203 | 11453349 | 11453203 | ID=Msa0278450-mRNA-1:exon:5173;Parent=Msa0278450-mRNA-1 |
| chr2_3 | exon | 11454028 | 11454274 | 11454028 | ID=Msa0278450-mRNA-1:exon:5172;Parent=Msa0278450-mRNA-1 |
| chr2_3 | exon | 11454723 | 11455729 | 11454723 | ID=Msa0278450-mRNA-1:exon:5171;Parent=Msa0278450-mRNA-1 |
| chr2_3 | CDS | 11454723 | 11455729 | 11454723 | ID=Msa0278450-mRNA-1:cds;Parent=Msa0278450-mRNA-1 |
| chr2_3 | CDS | 11454028 | 11454274 | 11454028 | ID=Msa0278450-mRNA-1:cds;Parent=Msa0278450-mRNA-1 |
| chr2_3 | CDS | 11453203 | 11453349 | 11453203 | ID=Msa0278450-mRNA-1:cds;Parent=Msa0278450-mRNA-1 |
| chr2_3 | CDS | 11452281 | 11452529 | 11452281 | ID=Msa0278450-mRNA-1:cds;Parent=Msa0278450-mRNA-1 |
| chr2_3 | three_prime_UTR | 11451910 | 11452280 | 11451910 | ID=Msa0278450-mRNA-1:three_prime_utr;Parent=Msa0278450-mRNA-1 |
| chr2_3 | three_prime_UTR | 11451723 | 11451791 | 11451723 | ID=Msa0278450-mRNA-1:three_prime_utr;Parent=Msa0278450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
