Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0619050 | XP_024629351.2 | 77.104 | 297 | 26 | 9 | 1 | 293 | 1 | 259 | 9.45e-124 | 364 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001960 | Msa0619050 | 0.811990 | 5.309161e-51 | -8.615850e-47 |
| Msa0028620 | Msa0619050 | 0.802713 | 4.923034e-49 | -8.615850e-47 |
| Msa0030160 | Msa0619050 | 0.800558 | 1.362135e-48 | -8.615850e-47 |
| Msa0036890 | Msa0619050 | 0.809424 | 1.905535e-50 | -8.615850e-47 |
| Msa0053860 | Msa0619050 | 0.806951 | 6.409826e-50 | -8.615850e-47 |
| Msa0084970 | Msa0619050 | 0.808087 | 3.679664e-50 | -8.615850e-47 |
| Msa0089980 | Msa0619050 | 0.809551 | 1.789587e-50 | -8.615850e-47 |
| Msa0090010 | Msa0619050 | 0.806850 | 6.731598e-50 | -8.615850e-47 |
| Msa0101240 | Msa0619050 | 0.800355 | 1.498335e-48 | -8.615850e-47 |
| Msa0106620 | Msa0619050 | 0.827921 | 1.197405e-54 | -8.615850e-47 |
| Msa0106710 | Msa0619050 | 0.806322 | 8.704231e-50 | -8.615850e-47 |
| Msa0108410 | Msa0619050 | 0.824307 | 8.663600e-54 | -8.615850e-47 |
| Msa0614380 | Msa0619050 | 0.809611 | 1.737165e-50 | -8.615850e-47 |
| Msa0619050 | Msa0626460 | 0.809512 | 1.824438e-50 | -8.615850e-47 |
| Msa0619050 | Msa0655920 | 0.800782 | 1.226107e-48 | -8.615850e-47 |
| Msa0619050 | Msa0659120 | 0.853846 | 1.823976e-61 | -8.615850e-47 |
| Msa0619050 | Msa0664540 | 0.814726 | 1.330011e-51 | -8.615850e-47 |
| Msa0619050 | Msa0698290 | 0.820214 | 7.721926e-53 | -8.615850e-47 |
| Msa0619050 | Msa0702720 | 0.815420 | 9.332111e-52 | -8.615850e-47 |
| Msa0619050 | Msa0705580 | 0.881622 | 2.059131e-70 | -8.615850e-47 |
| Msa0619050 | Msa0738240 | 0.822655 | 2.109412e-53 | -8.615850e-47 |
| Msa0619050 | Msa0784480 | 0.804662 | 1.939701e-49 | -8.615850e-47 |
| Msa0619050 | Msa0795070 | 0.811752 | 5.981556e-51 | -8.615850e-47 |
| Msa0619050 | Msa0855870 | 0.811166 | 8.020181e-51 | -8.615850e-47 |
| Msa0619050 | Msa0865970 | 0.802932 | 4.436817e-49 | -8.615850e-47 |
| Msa0619050 | Msa0871720 | 0.815963 | 7.060196e-52 | -8.615850e-47 |
| Msa0619050 | Msa0899970 | 0.801611 | 8.298048e-49 | -8.615850e-47 |
| Msa0619050 | Msa0910410 | 0.808711 | 2.707589e-50 | -8.615850e-47 |
| Msa0619050 | Msa0933760 | 0.811334 | 7.373007e-51 | -8.615850e-47 |
| Msa0619050 | Msa0934140 | 0.811579 | 6.524874e-51 | -8.615850e-47 |
| Msa0619050 | Msa0979180 | 0.806936 | 6.455233e-50 | -8.615850e-47 |
| Msa0619050 | Msa0999680 | 0.803346 | 3.642729e-49 | -8.615850e-47 |
| Msa0619050 | Msa1000920 | 0.808920 | 2.443483e-50 | -8.615850e-47 |
| Msa0619050 | Msa1012800 | 0.812119 | 4.975983e-51 | -8.615850e-47 |
| Msa0619050 | Msa1026480 | 0.802397 | 5.719602e-49 | -8.615850e-47 |
| Msa0619050 | Msa1028280 | 0.804835 | 1.784614e-49 | -8.615850e-47 |
| Msa0619050 | Msa1034500 | 0.838615 | 2.588684e-57 | -8.615850e-47 |
| Msa0619050 | Msa1145810 | 0.802744 | 4.851743e-49 | -8.615850e-47 |
| Msa0619050 | Msa1155170 | -0.805723 | 1.163158e-49 | -8.615850e-47 |
| Msa0619050 | Msa1170350 | 0.800493 | 1.404512e-48 | -8.615850e-47 |
| Msa0619050 | Msa1188180 | 0.819153 | 1.348889e-52 | -8.615850e-47 |
| Msa0619050 | Msa1191180 | 0.804849 | 1.772640e-49 | -8.615850e-47 |
| Msa0619050 | Msa1225860 | -0.804559 | 2.038029e-49 | -8.615850e-47 |
| Msa0619050 | Msa1236160 | -0.808214 | 3.457677e-50 | -8.615850e-47 |
| Msa0619050 | Msa1244500 | 0.804737 | 1.870959e-49 | -8.615850e-47 |
| Msa0619050 | Msa1266490 | 0.808965 | 2.389636e-50 | -8.615850e-47 |
| Msa0619050 | Msa1283740 | 0.818438 | 1.960354e-52 | -8.615850e-47 |
| Msa0619050 | Msa1322630 | 0.817147 | 3.833445e-52 | -8.615850e-47 |
| Msa0619050 | Msa1341840 | 0.820534 | 6.520102e-53 | -8.615850e-47 |
| Msa0619050 | Msa1348090 | 0.803866 | 2.841217e-49 | -8.615850e-47 |
| Msa0619050 | Msa1355450 | 0.801988 | 6.944906e-49 | -8.615850e-47 |
| Msa0619050 | Msa1360420 | 0.806829 | 6.801090e-50 | -8.615850e-47 |
| Msa0619050 | Msa1389900 | 0.802609 | 5.172323e-49 | -8.615850e-47 |
| Msa0619050 | Msa1393840 | -0.805079 | 1.587118e-49 | -8.615850e-47 |
| Msa0619050 | Msa1418240 | 0.804544 | 2.053106e-49 | -8.615850e-47 |
| Msa0619050 | Msa1459100 | 0.801670 | 8.069189e-49 | -8.615850e-47 |
| Msa0619050 | Msa1459360 | 0.801305 | 9.588303e-49 | -8.615850e-47 |
| Msa0619050 | Msa1461370 | 0.808294 | 3.324671e-50 | -8.615850e-47 |
| Msa0124320 | Msa0619050 | 0.808863 | 2.512382e-50 | -8.615850e-47 |
| Msa0187030 | Msa0619050 | 0.811670 | 6.233889e-51 | -8.615850e-47 |
| Msa0225100 | Msa0619050 | 0.813984 | 1.940995e-51 | -8.615850e-47 |
| Msa0234090 | Msa0619050 | 0.804355 | 2.248178e-49 | -8.615850e-47 |
| Msa0237210 | Msa0619050 | 0.820139 | 8.032718e-53 | -8.615850e-47 |
| Msa0403640 | Msa0619050 | 0.801775 | 7.678172e-49 | -8.615850e-47 |
| Msa0476680 | Msa0619050 | 0.801749 | 7.772481e-49 | -8.615850e-47 |
| Msa0251710 | Msa0619050 | 0.829604 | 4.689642e-55 | -8.615850e-47 |
| Msa0266180 | Msa0619050 | 0.809517 | 1.820063e-50 | -8.615850e-47 |
| Msa0274980 | Msa0619050 | 0.805760 | 1.142482e-49 | -8.615850e-47 |
| Msa0278450 | Msa0619050 | 0.800893 | 1.164107e-48 | -8.615850e-47 |
| Msa0287740 | Msa0619050 | 0.811583 | 6.511472e-51 | -8.615850e-47 |
| Msa0288620 | Msa0619050 | 0.802716 | 4.917301e-49 | -8.615850e-47 |
| Msa0290720 | Msa0619050 | 0.802700 | 4.953043e-49 | -8.615850e-47 |
| Msa0298410 | Msa0619050 | 0.804791 | 1.823022e-49 | -8.615850e-47 |
| Msa0315690 | Msa0619050 | 0.824331 | 8.553350e-54 | -8.615850e-47 |
| Msa0328080 | Msa0619050 | 0.806854 | 6.719039e-50 | -8.615850e-47 |
| Msa0562570 | Msa0619050 | 0.815947 | 7.119490e-52 | -8.615850e-47 |
| Msa0568800 | Msa0619050 | 0.861380 | 1.068771e-63 | -8.615850e-47 |
| Msa0579660 | Msa0619050 | 0.825413 | 4.751435e-54 | -8.615850e-47 |
| Msa0583360 | Msa0619050 | -0.805706 | 1.172546e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0619050 | MtrunA17_Chr8g0383741 | 77.104 | 297 | 26 | 9 | 1 | 293 | 1 | 259 | 8.69e-128 | 364 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 73 sgRNAs with CRISPR-Local
Find 303 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAGCTGCAATATCATTT+TGG | 0.194942 | 4_2:+70055418 | None:intergenic |
| GAAATGTCACACAGCATATT+TGG | 0.213635 | 4_2:+70055020 | None:intergenic |
| GTGTCTTCTTTAACCTGTTC+TGG | 0.244428 | 4_2:+70059468 | None:intergenic |
| TGTAGTATCCTTTGGTGTTC+TGG | 0.255404 | 4_2:+70059710 | None:intergenic |
| ACAAGAATCTACAGTTATTA+AGG | 0.256810 | 4_2:-70055595 | Msa0619050:CDS |
| TCTTTAACCTGTTCTGGTTC+AGG | 0.262282 | 4_2:+70059474 | None:intergenic |
| TATTGCTGATCAGTATTAAA+AGG | 0.304496 | 4_2:-70054870 | Msa0619050:three_prime_UTR |
| GTAGATTCTTGTTCTGTAGA+TGG | 0.312343 | 4_2:+70055606 | None:intergenic |
| CAATGTAATAATAAAGAAAA+AGG | 0.333360 | 4_2:+70054985 | None:intergenic |
| AGAACTGCGATTGAAAGAAA+TGG | 0.359351 | 4_2:-70059553 | Msa0619050:exon |
| TTCACAACTGTTTCTTCAGC+TGG | 0.359946 | 4_2:+70055447 | None:intergenic |
| AGGAGAGGCTGGAGTGGAAG+TGG | 0.367160 | 4_2:+70059849 | None:intergenic |
| GTAATCAAATCCTTATATTC+AGG | 0.385674 | 4_2:+70059748 | None:intergenic |
| AATTTCGTTAACGTCAAGAT+TGG | 0.387445 | 4_2:+70059392 | None:intergenic |
| TTCACAATCTCTTCGGCAGC+TGG | 0.403433 | 4_2:+70055528 | None:intergenic |
| GGAGATTCATGTTTCAAAGT+TGG | 0.408662 | 4_2:+70055672 | None:intergenic |
| CACAGCATATTTGGTTGGTA+AGG | 0.422999 | 4_2:+70055029 | None:intergenic |
| AGTTTGTTTGTAGTATCCTT+TGG | 0.426733 | 4_2:+70059702 | None:intergenic |
| GAACTGCGATTGAAAGAAAT+GGG | 0.434567 | 4_2:-70059552 | Msa0619050:exon |
| GATGTGAAAAGAGGAGAGGC+TGG | 0.439442 | 4_2:+70059838 | None:intergenic |
| TTCTGTCTTCACAATCTCTT+CGG | 0.442450 | 4_2:+70055521 | None:intergenic |
| TTCTCTTCTATGCTAGATGT+TGG | 0.446295 | 4_2:+70055189 | None:intergenic |
| ATTAGAAACAGAGAAACCTT+TGG | 0.449166 | 4_2:-70055715 | Msa0619050:CDS |
| ATTTGATTACTCTGTTGTCT+TGG | 0.452986 | 4_2:-70059735 | Msa0619050:five_prime_UTR |
| AAACCAAAGGTTACGAAGGA+TGG | 0.459100 | 4_2:-70059516 | Msa0619050:CDS |
| ATTTCGTTAACGTCAAGATT+GGG | 0.465563 | 4_2:+70059393 | None:intergenic |
| GAAAAGAGGAGAGGCTGGAG+TGG | 0.471383 | 4_2:+70059843 | None:intergenic |
| TTAATCCAACGGTCTACAAC+CGG | 0.472549 | 4_2:-70055106 | Msa0619050:exon |
| GAAGGCACCTGAACCAGAAC+AGG | 0.477708 | 4_2:-70059481 | Msa0619050:CDS |
| GTCTAGTGTTTGAAACGAAA+AGG | 0.478027 | 4_2:+70059661 | None:intergenic |
| ACTGTCAGCATCAGAAGCCT+TGG | 0.483191 | 4_2:+70055146 | None:intergenic |
| ATCACTTTCTCCGCAGGTGG+AGG | 0.497231 | 4_2:+70055261 | None:intergenic |
| ATCTGTGGAGAACAAAATAG+TGG | 0.502395 | 4_2:-70055214 | Msa0619050:CDS |
| AGTGTGAGAAAAGTAGAAGA+AGG | 0.506606 | 4_2:+70059601 | None:intergenic |
| TAATACTGATCAGCAATAGC+AGG | 0.510622 | 4_2:+70054875 | None:intergenic |
| AAGCTTGTTGTTCAACAAAG+AGG | 0.514250 | 4_2:-70059334 | Msa0619050:intron |
| AGTTATTAAGGTTGATGTTG+AGG | 0.515319 | 4_2:-70055583 | Msa0619050:CDS |
| AACCAAAGGTTACGAAGGAT+GGG | 0.516776 | 4_2:-70059515 | Msa0619050:CDS |
| TATTATGATGATGTGAAAAG+AGG | 0.520450 | 4_2:+70059829 | None:intergenic |
| TTGAAATCAGAGAGAGAATG+AGG | 0.530255 | 4_2:+70059637 | None:intergenic |
| TCAATCACTTTCTCCGCAGG+TGG | 0.530836 | 4_2:+70055258 | None:intergenic |
| TGCAGCCGGTTGTAGACCGT+TGG | 0.535078 | 4_2:+70055101 | None:intergenic |
| ACTTCAATCACTTTCTCCGC+AGG | 0.536439 | 4_2:+70055255 | None:intergenic |
| TTGCAGCTACACGGTGCAGC+CGG | 0.538459 | 4_2:+70055087 | None:intergenic |
| TTTAACAAATGCAGAATCTG+TGG | 0.554816 | 4_2:-70055229 | Msa0619050:CDS |
| AGAAGGTGAGAAAGCTTCAG+AGG | 0.560763 | 4_2:-70055364 | Msa0619050:CDS |
| AGAAACAGAGAAACCTTTGG+AGG | 0.576894 | 4_2:-70055712 | Msa0619050:CDS |
| GAGGCTGGAGTGGAAGTGGA+TGG | 0.577212 | 4_2:+70059853 | None:intergenic |
| TGTCACACAGCATATTTGGT+TGG | 0.579475 | 4_2:+70055024 | None:intergenic |
| GACTATTCTCATTGAAAATG+TGG | 0.591672 | 4_2:-70055289 | Msa0619050:CDS |
| ACCAAAGGTTACGAAGGATG+GGG | 0.594184 | 4_2:-70059514 | Msa0619050:CDS |
| GCTTCTATCTCTTAATCCAA+CGG | 0.597784 | 4_2:-70055117 | Msa0619050:exon |
| TCATGTAGAGCATATATCCA+AGG | 0.613863 | 4_2:-70055163 | Msa0619050:CDS |
| TGAAATCAGAGAGAGAATGA+GGG | 0.613973 | 4_2:+70059638 | None:intergenic |
| GAATGAAGATACAATTACAA+AGG | 0.619093 | 4_2:-70055790 | Msa0619050:CDS |
| CACTGTTGAAACCAAAGTGG+AGG | 0.620060 | 4_2:-70059448 | Msa0619050:CDS |
| TATTCTCATTGAAAATGTGG+TGG | 0.622958 | 4_2:-70055286 | Msa0619050:CDS |
| TCTTGGTGCCAGAACACCAA+AGG | 0.627447 | 4_2:-70059718 | Msa0619050:five_prime_UTR |
| TGCGGAGAAAGTGATTGAAG+TGG | 0.637663 | 4_2:-70055253 | Msa0619050:CDS |
| AACTAAACCAAAGGTTACGA+AGG | 0.648382 | 4_2:-70059520 | Msa0619050:CDS |
| ACAGATTCAGAAACACAAGA+AGG | 0.653137 | 4_2:-70055381 | Msa0619050:CDS |
| GGGTTGTGCAACTAAACCAA+AGG | 0.654419 | 4_2:-70059529 | Msa0619050:CDS |
| TGTGGTGGTTCCTCCACCTG+CGG | 0.658290 | 4_2:-70055271 | Msa0619050:CDS |
| ACGACGACTTTGCAGCTACA+CGG | 0.662499 | 4_2:+70055078 | None:intergenic |
| AGACACTGTTGAAACCAAAG+TGG | 0.670371 | 4_2:-70059451 | Msa0619050:CDS |
| GAAATCAGAGAGAGAATGAG+GGG | 0.677115 | 4_2:+70059639 | None:intergenic |
| AACTGCGATTGAAAGAAATG+GGG | 0.679437 | 4_2:-70059551 | Msa0619050:exon |
| CAAGAGCAATTGTTGCAGAG+TGG | 0.686009 | 4_2:-70059417 | Msa0619050:CDS |
| CCAAAGGTTACGAAGGATGG+GGG | 0.695094 | 4_2:-70059513 | Msa0619050:CDS |
| TGATGATGTGAAAAGAGGAG+AGG | 0.703681 | 4_2:+70059834 | None:intergenic |
| ACTGCGATTGAAAGAAATGG+GGG | 0.707466 | 4_2:-70059550 | Msa0619050:exon |
| CTGCGATTGAAAGAAATGGG+GGG | 0.733842 | 4_2:-70059549 | Msa0619050:exon |
| TATTGCAGCTGAAGTAACTG+TGG | 0.741891 | 4_2:-70055409 | Msa0619050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAATTTAAAAAATATCAAA+CGG | - | chr4_2:70057818-70057837 | Msa0619050:intron | 10.0% |
| !! | TCATATTATTAAAATAGATA+TGG | - | chr4_2:70058253-70058272 | Msa0619050:intron | 10.0% |
| !! | ATAATAATAATAATAGATGA+GGG | + | chr4_2:70059770-70059789 | None:intergenic | 10.0% |
| !! | AATAATAATAATAATAGATG+AGG | + | chr4_2:70059771-70059790 | None:intergenic | 10.0% |
| !!! | ACAAACTTTTTTTTTTTCAT+AGG | - | chr4_2:70055539-70055558 | Msa0619050:CDS | 15.0% |
| !!! | CATTATTTATTTGTTAAGAA+GGG | + | chr4_2:70056953-70056972 | None:intergenic | 15.0% |
| !!! | TCATTATTTATTTGTTAAGA+AGG | + | chr4_2:70056954-70056973 | None:intergenic | 15.0% |
| !!! | AACCAATTAAATTTGTTATT+TGG | - | chr4_2:70057109-70057128 | Msa0619050:intron | 15.0% |
| !! | AAATAAAAGGAATATTGTTA+GGG | + | chr4_2:70057236-70057255 | None:intergenic | 15.0% |
| !! | TCTAACAAAAATTAAAACAT+TGG | - | chr4_2:70057533-70057552 | Msa0619050:intron | 15.0% |
| !! | AAAAAAATGTAAACAGATAT+GGG | + | chr4_2:70058065-70058084 | None:intergenic | 15.0% |
| !! | AAAAAAAATGTAAACAGATA+TGG | + | chr4_2:70058066-70058085 | None:intergenic | 15.0% |
| !! | ATTATTAAAATAGATATGGT+TGG | - | chr4_2:70058257-70058276 | Msa0619050:intron | 15.0% |
| !! | CAATGTAATAATAAAGAAAA+AGG | + | chr4_2:70059729-70059748 | None:intergenic | 15.0% |
| !! | GAAATTCTTAAAATTGATCT+TGG | - | chr4_2:70055851-70055870 | Msa0619050:intron | 20.0% |
| !! | GTATGAAAATGAGTTTATAT+GGG | - | chr4_2:70056118-70056137 | Msa0619050:intron | 20.0% |
| !! | ATATGAAGTCACAATATTTA+AGG | + | chr4_2:70056370-70056389 | None:intergenic | 20.0% |
| !!! | GTTGTGAACTTTAATTATTT+TGG | - | chr4_2:70056630-70056649 | Msa0619050:intron | 20.0% |
| !! | ATCAAGAATTTATCAAGAAA+AGG | - | chr4_2:70057082-70057101 | Msa0619050:intron | 20.0% |
| !!! | CAATTAAATTTGTTATTTGG+CGG | - | chr4_2:70057112-70057131 | Msa0619050:intron | 20.0% |
| !! | GAAATAAAAGGAATATTGTT+AGG | + | chr4_2:70057237-70057256 | None:intergenic | 20.0% |
| !! | CATAAATTAAATGTAATGCA+TGG | - | chr4_2:70057372-70057391 | Msa0619050:intron | 20.0% |
| !! | AACAAAAATTAAAACATTGG+CGG | - | chr4_2:70057536-70057555 | Msa0619050:intron | 20.0% |
| !!! | GTTCAAATCACTTTTTAAAT+TGG | - | chr4_2:70057790-70057809 | Msa0619050:intron | 20.0% |
| !! | TTAGTTGTTGAACTATAAAA+TGG | + | chr4_2:70058353-70058372 | None:intergenic | 20.0% |
| !!! | TTACTTAGAAGTCAATTTTA+AGG | - | chr4_2:70058558-70058577 | Msa0619050:intron | 20.0% |
| !!! | ACTAAATTTTTTTCATTCAG+AGG | - | chr4_2:70058721-70058740 | Msa0619050:intron | 20.0% |
| !!! | TTTGTTTTTTTCATTTTGAG+TGG | + | chr4_2:70058950-70058969 | None:intergenic | 20.0% |
| !! | TATTATGATGATGTGAAAAG+AGG | + | chr4_2:70054885-70054904 | None:intergenic | 25.0% |
| !! | TCAAACTTTTCCTGAATATA+AGG | - | chr4_2:70054953-70054972 | Msa0619050:intron | 25.0% |
| ! | GTAATCAAATCCTTATATTC+AGG | + | chr4_2:70054966-70054985 | None:intergenic | 25.0% |
| !!! | AACAAACTGTCGTTTTAAAT+TGG | - | chr4_2:70055024-70055043 | Msa0619050:three_prime_UTR | 25.0% |
| !! | CACTTTTACTTTCTTTCTTT+TGG | - | chr4_2:70055129-70055148 | Msa0619050:CDS | 25.0% |
| !!! | CTCTATATTTTTGTGTATGT+TGG | - | chr4_2:70055476-70055495 | Msa0619050:CDS | 25.0% |
| !! | ATTCTTTTTACTTGCCATTA+AGG | + | chr4_2:70055580-70055599 | None:intergenic | 25.0% |
| ! | AACTCGTTTAAATGTATATG+TGG | - | chr4_2:70055637-70055656 | Msa0619050:CDS | 25.0% |
| ! | GTTTAAATGTATATGTGGAT+TGG | - | chr4_2:70055642-70055661 | Msa0619050:CDS | 25.0% |
| ! | AAAATGTCCTAATGTATGTT+TGG | - | chr4_2:70055680-70055699 | Msa0619050:CDS | 25.0% |
| !! | TTGGTAAAATAGTTTAAAGC+AGG | - | chr4_2:70055870-70055889 | Msa0619050:intron | 25.0% |
| !! | TGGTAAAATAGTTTAAAGCA+GGG | - | chr4_2:70055871-70055890 | Msa0619050:intron | 25.0% |
| ! | GGTATGAAAATGAGTTTATA+TGG | - | chr4_2:70056117-70056136 | Msa0619050:intron | 25.0% |
| ! | GTAAATTTGTGAAGTTAACA+TGG | + | chr4_2:70056471-70056490 | None:intergenic | 25.0% |
| ! | ACAAAAGAAAAAATTCACCA+AGG | + | chr4_2:70056512-70056531 | None:intergenic | 25.0% |
| ! | TGTAGGATTATGAAACTAAA+TGG | + | chr4_2:70056568-70056587 | None:intergenic | 25.0% |
| !!! | GAACTTTAATTATTTTGGCA+AGG | - | chr4_2:70056635-70056654 | Msa0619050:intron | 25.0% |
| ! | AGAATCTTCGAAAACAAATT+AGG | + | chr4_2:70056665-70056684 | None:intergenic | 25.0% |
| ! | GTTTGAATATGACTATAAGA+GGG | - | chr4_2:70056910-70056929 | Msa0619050:intron | 25.0% |
| ! | TTTGAATATGACTATAAGAG+GGG | - | chr4_2:70056911-70056930 | Msa0619050:intron | 25.0% |
| ! | TATAATAACGACAAGAAAAG+TGG | + | chr4_2:70057008-70057027 | None:intergenic | 25.0% |
| ! | CGCCAAATAACAAATTTAAT+TGG | + | chr4_2:70057114-70057133 | None:intergenic | 25.0% |
| !!! | TTCCTTTTATTTCCCAAATT+TGG | - | chr4_2:70057244-70057263 | Msa0619050:intron | 25.0% |
| ! | TACCAAATTTGGGAAATAAA+AGG | + | chr4_2:70057249-70057268 | None:intergenic | 25.0% |
| !!! | CTTTTTCAACTACCAAATTT+GGG | + | chr4_2:70057259-70057278 | None:intergenic | 25.0% |
| !!! | ACTTTTTCAACTACCAAATT+TGG | + | chr4_2:70057260-70057279 | None:intergenic | 25.0% |
| ! | TTGAATCATTGACAAAGAAA+AGG | - | chr4_2:70057316-70057335 | Msa0619050:intron | 25.0% |
| ! | TTGAAAATTTAGTAGACACA+AGG | - | chr4_2:70057604-70057623 | Msa0619050:intron | 25.0% |
| ! | TGAAAATTTAGTAGACACAA+GGG | - | chr4_2:70057605-70057624 | Msa0619050:intron | 25.0% |
| ! | AACAAGTAATGTGATAAAAG+AGG | + | chr4_2:70058144-70058163 | None:intergenic | 25.0% |
| ! | CAAATCAACTTACTAGTTAT+CGG | - | chr4_2:70058481-70058500 | Msa0619050:intron | 25.0% |
| !! | TATTGATATGAAGTATCCAT+CGG | - | chr4_2:70058633-70058652 | Msa0619050:intron | 25.0% |
| ! | GTTAAAATGAGATTCATACA+TGG | + | chr4_2:70058873-70058892 | None:intergenic | 25.0% |
| ! | GAATGAAGATACAATTACAA+AGG | - | chr4_2:70058921-70058940 | Msa0619050:intron | 25.0% |
| ! | AAATGAAAAAAACAAAGCTG+AGG | - | chr4_2:70058954-70058973 | Msa0619050:intron | 25.0% |
| ! | ACAAGAATCTACAGTTATTA+AGG | - | chr4_2:70059116-70059135 | Msa0619050:intron | 25.0% |
| !!! | GATGATTTTTCTAGTTTGAT+TGG | + | chr4_2:70059399-70059418 | None:intergenic | 25.0% |
| ! | TATTGCTGATCAGTATTAAA+AGG | - | chr4_2:70059841-70059860 | Msa0619050:five_prime_UTR | 25.0% |
| ATTTGATTACTCTGTTGTCT+TGG | - | chr4_2:70054976-70054995 | Msa0619050:intron | 30.0% | |
| ! | AGTTTGTTTGTAGTATCCTT+TGG | + | chr4_2:70055012-70055031 | None:intergenic | 30.0% |
| ATTTCGTTAACGTCAAGATT+GGG | + | chr4_2:70055321-70055340 | None:intergenic | 30.0% | |
| AATTTCGTTAACGTCAAGAT+TGG | + | chr4_2:70055322-70055341 | None:intergenic | 30.0% | |
| ! | CAAATTTTTATGCTGCATAG+AGG | - | chr4_2:70055502-70055521 | Msa0619050:CDS | 30.0% |
| AATTCCTCCAAACATACATT+AGG | + | chr4_2:70055690-70055709 | None:intergenic | 30.0% | |
| TTATCCATGTCAATTTGGAT+GGG | + | chr4_2:70055749-70055768 | None:intergenic | 30.0% | |
| ATTATCCATGTCAATTTGGA+TGG | + | chr4_2:70055750-70055769 | None:intergenic | 30.0% | |
| TTCGATTATCCATGTCAATT+TGG | + | chr4_2:70055754-70055773 | None:intergenic | 30.0% | |
| ! | TAATCGAACATGAGATTTTG+AGG | - | chr4_2:70055766-70055785 | Msa0619050:CDS | 30.0% |
| ! | GGTAAAATAGTTTAAAGCAG+GGG | - | chr4_2:70055872-70055891 | Msa0619050:intron | 30.0% |
| ! | CACATTCCAAATTCTAAGAA+GGG | - | chr4_2:70055906-70055925 | Msa0619050:intron | 30.0% |
| TGTAGTAGAATGTCAATTCT+TGG | - | chr4_2:70055982-70056001 | Msa0619050:intron | 30.0% | |
| TATTATATGATCACCCGATA+TGG | - | chr4_2:70056034-70056053 | Msa0619050:intron | 30.0% | |
| ATTATATGATCACCCGATAT+GGG | - | chr4_2:70056035-70056054 | Msa0619050:intron | 30.0% | |
| !!! | CACTTTACAAACTAGTTTTG+TGG | - | chr4_2:70056153-70056172 | Msa0619050:intron | 30.0% |
| ATACACTCTCACTATTGATA+CGG | - | chr4_2:70056219-70056238 | Msa0619050:intron | 30.0% | |
| !! | TTTTATGGATTAATGCCGAT+TGG | + | chr4_2:70056249-70056268 | None:intergenic | 30.0% |
| ! | GCGTTGAAATGTAACTTTTA+TGG | + | chr4_2:70056264-70056283 | None:intergenic | 30.0% |
| TTTGTCGAAACAAACTAATG+AGG | - | chr4_2:70056309-70056328 | Msa0619050:intron | 30.0% | |
| AAAGTCATTACGACTAAACA+TGG | + | chr4_2:70056344-70056363 | None:intergenic | 30.0% | |
| TTAAGACAATTGCTAGAGTA+GGG | + | chr4_2:70056446-70056465 | None:intergenic | 30.0% | |
| ATTAAGACAATTGCTAGAGT+AGG | + | chr4_2:70056447-70056466 | None:intergenic | 30.0% | |
| TAGCGGTTAACAAAATCAAT+GGG | + | chr4_2:70056770-70056789 | None:intergenic | 30.0% | |
| ATAGCGGTTAACAAAATCAA+TGG | + | chr4_2:70056771-70056790 | None:intergenic | 30.0% | |
| GTTACAAACATCATGAATGA+TGG | - | chr4_2:70056839-70056858 | Msa0619050:intron | 30.0% | |
| CGTTTGAATATGACTATAAG+AGG | - | chr4_2:70056909-70056928 | Msa0619050:intron | 30.0% | |
| ! | ACAAGAAAAGTGGTTTTCTT+GGG | + | chr4_2:70056998-70057017 | None:intergenic | 30.0% |
| AATGGTGTGTAATTAAGGAA+AGG | - | chr4_2:70057149-70057168 | Msa0619050:intron | 30.0% | |
| !! | AGTTGCATGATTTGTTGATT+TGG | - | chr4_2:70057448-70057467 | Msa0619050:intron | 30.0% |
| AAAACTGTTGTCCAAAAAAG+GGG | + | chr4_2:70057572-70057591 | None:intergenic | 30.0% | |
| GAAAACTGTTGTCCAAAAAA+GGG | + | chr4_2:70057573-70057592 | None:intergenic | 30.0% | |
| TGAAAACTGTTGTCCAAAAA+AGG | + | chr4_2:70057574-70057593 | None:intergenic | 30.0% | |
| GAAAATTTAGTAGACACAAG+GGG | - | chr4_2:70057606-70057625 | Msa0619050:intron | 30.0% | |
| !!! | GACAATTGCTCTTTTTTTTG+TGG | - | chr4_2:70057657-70057676 | Msa0619050:intron | 30.0% |
| !!! | AATTGCTCTTTTTTTTGTGG+TGG | - | chr4_2:70057660-70057679 | Msa0619050:intron | 30.0% |
| GACAATGCATAATACATACA+AGG | + | chr4_2:70057705-70057724 | None:intergenic | 30.0% | |
| AACGGTAACTAACTATTGTT+CGG | - | chr4_2:70057836-70057855 | Msa0619050:intron | 30.0% | |
| TGATTACTGTCAATTGTCTT+AGG | - | chr4_2:70057908-70057927 | Msa0619050:intron | 30.0% | |
| AATATCAGATTCTGACATCA+AGG | + | chr4_2:70057991-70058010 | None:intergenic | 30.0% | |
| TTGATGTCAGAATCTGATAT+TGG | - | chr4_2:70057990-70058009 | Msa0619050:intron | 30.0% | |
| TGATGTCAGAATCTGATATT+GGG | - | chr4_2:70057991-70058010 | Msa0619050:intron | 30.0% | |
| AGATAGTAGATTGGAATGTT+TGG | + | chr4_2:70058018-70058037 | None:intergenic | 30.0% | |
| !! | ATCCTCTCTTTTTGTTTGTA+AGG | - | chr4_2:70058196-70058215 | Msa0619050:intron | 30.0% |
| ! | CGTGAGCTTTTATCAAATAA+TGG | - | chr4_2:70058294-70058313 | Msa0619050:intron | 30.0% |
| CAAATAATGGTTGAGCTTAT+AGG | - | chr4_2:70058307-70058326 | Msa0619050:intron | 30.0% | |
| !! | ACTAGTAAGTTGATTGATCA+TGG | + | chr4_2:70058439-70058458 | None:intergenic | 30.0% |
| CTCAATTAAGTTAGACTAGT+TGG | + | chr4_2:70058517-70058536 | None:intergenic | 30.0% | |
| GAAAAAAATTTAGTTGCGAG+AGG | + | chr4_2:70058715-70058734 | None:intergenic | 30.0% | |
| TACATGGATAGAATTTGTGT+GGG | + | chr4_2:70058857-70058876 | None:intergenic | 30.0% | |
| ATACATGGATAGAATTTGTG+TGG | + | chr4_2:70058858-70058877 | None:intergenic | 30.0% | |
| ATTAGAAACAGAGAAACCTT+TGG | - | chr4_2:70058996-70059015 | Msa0619050:intron | 30.0% | |
| !!! | TTGTTTTTAGTTTCCTGAGT+TGG | + | chr4_2:70059081-70059100 | None:intergenic | 30.0% |
| !! | AGTTATTAAGGTTGATGTTG+AGG | - | chr4_2:70059128-70059147 | Msa0619050:intron | 30.0% |
| !! | GTGATTTGATTTTGCAATGA+AGG | + | chr4_2:70059159-70059178 | None:intergenic | 30.0% |
| GACTATTCTCATTGAAAATG+TGG | - | chr4_2:70059422-70059441 | Msa0619050:CDS | 30.0% | |
| TATTCTCATTGAAAATGTGG+TGG | - | chr4_2:70059425-70059444 | Msa0619050:CDS | 30.0% | |
| TTTAACAAATGCAGAATCTG+TGG | - | chr4_2:70059482-70059501 | Msa0619050:CDS | 30.0% | |
| !!! | AAGACGATTTTTTGTTCTTG+TGG | - | chr4_2:70059793-70059812 | Msa0619050:five_prime_UTR | 30.0% |
| ! | GTCTAGTGTTTGAAACGAAA+AGG | + | chr4_2:70055053-70055072 | None:intergenic | 35.0% |
| TGAAATCAGAGAGAGAATGA+GGG | + | chr4_2:70055076-70055095 | None:intergenic | 35.0% | |
| TTGAAATCAGAGAGAGAATG+AGG | + | chr4_2:70055077-70055096 | None:intergenic | 35.0% | |
| AGTGTGAGAAAAGTAGAAGA+AGG | + | chr4_2:70055113-70055132 | None:intergenic | 35.0% | |
| AGAACTGCGATTGAAAGAAA+TGG | - | chr4_2:70055158-70055177 | Msa0619050:CDS | 35.0% | |
| GAACTGCGATTGAAAGAAAT+GGG | - | chr4_2:70055159-70055178 | Msa0619050:CDS | 35.0% | |
| AACTGCGATTGAAAGAAATG+GGG | - | chr4_2:70055160-70055179 | Msa0619050:CDS | 35.0% | |
| AACTAAACCAAAGGTTACGA+AGG | - | chr4_2:70055191-70055210 | Msa0619050:CDS | 35.0% | |
| !! | AAGCTTGTTGTTCAACAAAG+AGG | - | chr4_2:70055377-70055396 | Msa0619050:CDS | 35.0% |
| ! | ATTTTTATGCTGCATAGAGG+AGG | - | chr4_2:70055505-70055524 | Msa0619050:CDS | 35.0% |
| CATTAAGGTTTGTATCAAGG+GGG | + | chr4_2:70055565-70055584 | None:intergenic | 35.0% | |
| CCATTAAGGTTTGTATCAAG+GGG | + | chr4_2:70055566-70055585 | None:intergenic | 35.0% | |
| GCCATTAAGGTTTGTATCAA+GGG | + | chr4_2:70055567-70055586 | None:intergenic | 35.0% | |
| TGCCATTAAGGTTTGTATCA+AGG | + | chr4_2:70055568-70055587 | None:intergenic | 35.0% | |
| ATGTCCTAATGTATGTTTGG+AGG | - | chr4_2:70055683-70055702 | Msa0619050:CDS | 35.0% | |
| ACGATCAAGCTAACTCAAAT+GGG | - | chr4_2:70055818-70055837 | Msa0619050:intron | 35.0% | |
| ! | GCACATTCCAAATTCTAAGA+AGG | - | chr4_2:70055905-70055924 | Msa0619050:intron | 35.0% |
| TCTCATCCCTTCTTAGAATT+TGG | + | chr4_2:70055915-70055934 | None:intergenic | 35.0% | |
| ATCTATTTGATCACCCACTA+TGG | - | chr4_2:70055945-70055964 | Msa0619050:intron | 35.0% | |
| TCTATTTGATCACCCACTAT+GGG | - | chr4_2:70055946-70055965 | Msa0619050:intron | 35.0% | |
| TTTAGTAGATGCCAATGCTT+AGG | - | chr4_2:70056068-70056087 | Msa0619050:intron | 35.0% | |
| !! | GGGCGAGTTGATAAAATATA+AGG | - | chr4_2:70056096-70056115 | Msa0619050:intron | 35.0% |
| TATTGATACGGTAGTCCAAT+CGG | - | chr4_2:70056231-70056250 | Msa0619050:intron | 35.0% | |
| !!! | GAGTAGGGAAGTGTTTTATA+TGG | + | chr4_2:70056431-70056450 | None:intergenic | 35.0% |
| TACCCAACAAAAGTTTACCT+TGG | - | chr4_2:70056492-70056511 | Msa0619050:intron | 35.0% | |
| ! | CACCAAGGTAAACTTTTGTT+GGG | + | chr4_2:70056497-70056516 | None:intergenic | 35.0% |
| ! | TCACCAAGGTAAACTTTTGT+TGG | + | chr4_2:70056498-70056517 | None:intergenic | 35.0% |
| TACATCATGCACTAAATGCA+TGG | - | chr4_2:70056694-70056713 | Msa0619050:intron | 35.0% | |
| ACTAAATGCATGGCAAACAA+AGG | - | chr4_2:70056704-70056723 | Msa0619050:intron | 35.0% | |
| TTAACAAAATCAATGGGGGT+GGG | + | chr4_2:70056764-70056783 | None:intergenic | 35.0% | |
| AGCGGTTAACAAAATCAATG+GGG | + | chr4_2:70056769-70056788 | None:intergenic | 35.0% | |
| TTCATGATGTTTGTAACCGT+GGG | + | chr4_2:70056836-70056855 | None:intergenic | 35.0% | |
| ATTCATGATGTTTGTAACCG+TGG | + | chr4_2:70056837-70056856 | None:intergenic | 35.0% | |
| ! | AAGAAAAGTGGTTTTCTTGG+GGG | + | chr4_2:70056996-70057015 | None:intergenic | 35.0% |
| ! | CAAGAAAAGTGGTTTTCTTG+GGG | + | chr4_2:70056997-70057016 | None:intergenic | 35.0% |
| ! | GACAAGAAAAGTGGTTTTCT+TGG | + | chr4_2:70056999-70057018 | None:intergenic | 35.0% |
| !! | TTGTTATTTGGCGGAAATCA+AGG | - | chr4_2:70057121-70057140 | Msa0619050:intron | 35.0% |
| ! | TGTTATTTGGCGGAAATCAA+GGG | - | chr4_2:70057122-70057141 | Msa0619050:intron | 35.0% |
| ! | GAGGTAATGGTGTGTAATTA+AGG | - | chr4_2:70057144-70057163 | Msa0619050:intron | 35.0% |
| ! | TGCTCTTAGCATCTTTTCTT+AGG | + | chr4_2:70057425-70057444 | None:intergenic | 35.0% |
| ! | GACTTTTTGTACCCCTTTTT+TGG | - | chr4_2:70057558-70057577 | Msa0619050:intron | 35.0% |
| GCAAAAATCACTGCTTGATT+AGG | - | chr4_2:70057630-70057649 | Msa0619050:intron | 35.0% | |
| CATAATACATACAAGGTACG+AGG | + | chr4_2:70057698-70057717 | None:intergenic | 35.0% | |
| ACCTAAGACAGTTGATCTAT+AGG | + | chr4_2:70057889-70057908 | None:intergenic | 35.0% | |
| CAATTGTCTTAGGTAACTAC+TGG | - | chr4_2:70057918-70057937 | Msa0619050:intron | 35.0% | |
| TTAGGTAACTACTGGTAGTA+AGG | - | chr4_2:70057926-70057945 | Msa0619050:intron | 35.0% | |
| ACTACTGGTAGTAAGGAATA+TGG | - | chr4_2:70057933-70057952 | Msa0619050:intron | 35.0% | |
| CTACTGGTAGTAAGGAATAT+GGG | - | chr4_2:70057934-70057953 | Msa0619050:intron | 35.0% | |
| AGATGGTAGGATAAATATGC+TGG | + | chr4_2:70057965-70057984 | None:intergenic | 35.0% | |
| AGCATATTTATCCTACCATC+TGG | - | chr4_2:70057964-70057983 | Msa0619050:intron | 35.0% | |
| GCATATTTATCCTACCATCT+GGG | - | chr4_2:70057965-70057984 | Msa0619050:intron | 35.0% | |
| ! | ATATGGGTTATTGTCCTCTA+GGG | + | chr4_2:70058049-70058068 | None:intergenic | 35.0% |
| GACCTTACAAACAAAAAGAG+AGG | + | chr4_2:70058201-70058220 | None:intergenic | 35.0% | |
| TTAATTATTGACGAAGCCGA+TGG | + | chr4_2:70058652-70058671 | None:intergenic | 35.0% | |
| !!! | GAGGTTCAAACTCTTGTTTT+AGG | - | chr4_2:70058740-70058759 | Msa0619050:intron | 35.0% |
| !!! | ATGTTTTTAGCATCCTCCAA+AGG | + | chr4_2:70059015-70059034 | None:intergenic | 35.0% |
| GGAGATTCATGTTTCAAAGT+TGG | + | chr4_2:70059042-70059061 | None:intergenic | 35.0% | |
| ACATGAATCTCCAAAAACAG+AGG | - | chr4_2:70059050-70059069 | Msa0619050:intron | 35.0% | |
| !!! | GTTGGTTTTTCCTCTGTTTT+TGG | + | chr4_2:70059063-70059082 | None:intergenic | 35.0% |
| GTAGATTCTTGTTCTGTAGA+TGG | + | chr4_2:70059108-70059127 | None:intergenic | 35.0% | |
| TTCTGTCTTCACAATCTCTT+CGG | + | chr4_2:70059193-70059212 | None:intergenic | 35.0% | |
| ! | GAAGTTTTCTTAGCTTCTTC+TGG | + | chr4_2:70059219-70059238 | None:intergenic | 35.0% |
| ! | CTTCAGCTGCAATATCATTT+TGG | + | chr4_2:70059296-70059315 | None:intergenic | 35.0% |
| ACAGATTCAGAAACACAAGA+AGG | - | chr4_2:70059330-70059349 | Msa0619050:intron | 35.0% | |
| ATCTGTGGAGAACAAAATAG+TGG | - | chr4_2:70059497-70059516 | Msa0619050:CDS | 35.0% | |
| TTCTCTTCTATGCTAGATGT+TGG | + | chr4_2:70059525-70059544 | None:intergenic | 35.0% | |
| TCATGTAGAGCATATATCCA+AGG | - | chr4_2:70059548-70059567 | Msa0619050:exon | 35.0% | |
| GCTTCTATCTCTTAATCCAA+CGG | - | chr4_2:70059594-70059613 | Msa0619050:five_prime_UTR | 35.0% | |
| GAAATGTCACACAGCATATT+TGG | + | chr4_2:70059694-70059713 | None:intergenic | 35.0% | |
| TAATACTGATCAGCAATAGC+AGG | + | chr4_2:70059839-70059858 | None:intergenic | 35.0% | |
| ! | TGATGATGTGAAAAGAGGAG+AGG | + | chr4_2:70054880-70054899 | None:intergenic | 40.0% |
| !! | TGTAGTATCCTTTGGTGTTC+TGG | + | chr4_2:70055004-70055023 | None:intergenic | 40.0% |
| GAAATCAGAGAGAGAATGAG+GGG | + | chr4_2:70055075-70055094 | None:intergenic | 40.0% | |
| ACTGCGATTGAAAGAAATGG+GGG | - | chr4_2:70055161-70055180 | Msa0619050:CDS | 40.0% | |
| AAACCAAAGGTTACGAAGGA+TGG | - | chr4_2:70055195-70055214 | Msa0619050:CDS | 40.0% | |
| AACCAAAGGTTACGAAGGAT+GGG | - | chr4_2:70055196-70055215 | Msa0619050:CDS | 40.0% | |
| !! | TCTTTAACCTGTTCTGGTTC+AGG | + | chr4_2:70055240-70055259 | None:intergenic | 40.0% |
| GTGTCTTCTTTAACCTGTTC+TGG | + | chr4_2:70055246-70055265 | None:intergenic | 40.0% | |
| AGACACTGTTGAAACCAAAG+TGG | - | chr4_2:70055260-70055279 | Msa0619050:CDS | 40.0% | |
| !! | TTGTTTTTCTGCCTCCACTT+TGG | + | chr4_2:70055277-70055296 | None:intergenic | 40.0% |
| CCCCTTGATACAAACCTTAA+TGG | - | chr4_2:70055563-70055582 | Msa0619050:CDS | 40.0% | |
| CTAACCCATCCAAATTGACA+TGG | - | chr4_2:70055742-70055761 | Msa0619050:CDS | 40.0% | |
| !! | TCGAACATGAGATTTTGAGG+AGG | - | chr4_2:70055769-70055788 | Msa0619050:CDS | 40.0% |
| ! | TTGAGTTAGCTTGATCGTGT+TGG | + | chr4_2:70055816-70055835 | None:intergenic | 40.0% |
| CACGATCAAGCTAACTCAAA+TGG | - | chr4_2:70055817-70055836 | Msa0619050:intron | 40.0% | |
| CTATTTGATCACCCACTATG+GGG | - | chr4_2:70055947-70055966 | Msa0619050:intron | 40.0% | |
| AACTTAAGTGACCCCATAGT+GGG | + | chr4_2:70055961-70055980 | None:intergenic | 40.0% | |
| TAACTTAAGTGACCCCATAG+TGG | + | chr4_2:70055962-70055981 | None:intergenic | 40.0% | |
| AAACATGAGTGGTCCCATAT+CGG | + | chr4_2:70056051-70056070 | None:intergenic | 40.0% | |
| TGGCATCTACTAAACATGAG+TGG | + | chr4_2:70056062-70056081 | None:intergenic | 40.0% | |
| TTCAACTTACGCGCACAATT+TGG | + | chr4_2:70056182-70056201 | None:intergenic | 40.0% | |
| GCTTTCTAACTACTGCTTGT+AGG | + | chr4_2:70056585-70056604 | None:intergenic | 40.0% | |
| !! | AAACAAAGGTGCAACCCTTT+TGG | - | chr4_2:70056718-70056737 | Msa0619050:intron | 40.0% |
| GTTAACAAAATCAATGGGGG+TGG | + | chr4_2:70056765-70056784 | None:intergenic | 40.0% | |
| GCGGTTAACAAAATCAATGG+GGG | + | chr4_2:70056768-70056787 | None:intergenic | 40.0% | |
| GAGCATGAGAACAATGATAG+CGG | + | chr4_2:70056787-70056806 | None:intergenic | 40.0% | |
| GATGGCAAAGTGCAAACAAA+AGG | - | chr4_2:70056857-70056876 | Msa0619050:intron | 40.0% | |
| GAATATGACTATAAGAGGGG+TGG | - | chr4_2:70056914-70056933 | Msa0619050:intron | 40.0% | |
| !! | TGAGTTTGAGTTGACTGTGA+TGG | - | chr4_2:70057291-70057310 | Msa0619050:intron | 40.0% |
| ! | TGATTTGGAGAGATAGTGAG+AGG | - | chr4_2:70057463-70057482 | Msa0619050:intron | 40.0% |
| GATTTGGAGAGATAGTGAGA+GGG | - | chr4_2:70057464-70057483 | Msa0619050:intron | 40.0% | |
| !!! | GCTCTTTTTTTTGTGGTGGT+CGG | - | chr4_2:70057664-70057683 | Msa0619050:intron | 40.0% |
| !!! | CTCTTTTTTTTGTGGTGGTC+GGG | - | chr4_2:70057665-70057684 | Msa0619050:intron | 40.0% |
| !!! | TCTTTTTTTTGTGGTGGTCG+GGG | - | chr4_2:70057666-70057685 | Msa0619050:intron | 40.0% |
| ! | TGAACTTAGCTCAGTTGGTA+GGG | + | chr4_2:70057727-70057746 | None:intergenic | 40.0% |
| GTAACTAACTATTGTTCGGC+AGG | - | chr4_2:70057840-70057859 | Msa0619050:intron | 40.0% | |
| GCCTATAGATCAACTGTCTT+AGG | - | chr4_2:70057885-70057904 | Msa0619050:intron | 40.0% | |
| ! | TATGGGTTATTGTCCTCTAG+GGG | + | chr4_2:70058048-70058067 | None:intergenic | 40.0% |
| ! | GATATGGGTTATTGTCCTCT+AGG | + | chr4_2:70058050-70058069 | None:intergenic | 40.0% |
| ACTTGTCTGACCACCTTTAA+TGG | - | chr4_2:70058685-70058704 | Msa0619050:intron | 40.0% | |
| CTTGTCTGACCACCTTTAAT+GGG | - | chr4_2:70058686-70058705 | Msa0619050:intron | 40.0% | |
| AGAAACAGAGAAACCTTTGG+AGG | - | chr4_2:70058999-70059018 | Msa0619050:intron | 40.0% | |
| AACAGAGGAAAAACCAACTC+AGG | - | chr4_2:70059065-70059084 | Msa0619050:intron | 40.0% | |
| ! | TTCACAACTGTTTCTTCAGC+TGG | + | chr4_2:70059267-70059286 | None:intergenic | 40.0% |
| TATTGCAGCTGAAGTAACTG+TGG | - | chr4_2:70059302-70059321 | Msa0619050:intron | 40.0% | |
| TTAATCCAACGGTCTACAAC+CGG | - | chr4_2:70059605-70059624 | Msa0619050:five_prime_UTR | 40.0% | |
| ! | CACAGCATATTTGGTTGGTA+AGG | + | chr4_2:70059685-70059704 | None:intergenic | 40.0% |
| TGTCACACAGCATATTTGGT+TGG | + | chr4_2:70059690-70059709 | None:intergenic | 40.0% | |
| CTGCGATTGAAAGAAATGGG+GGG | - | chr4_2:70055162-70055181 | Msa0619050:CDS | 45.0% | |
| GGGTTGTGCAACTAAACCAA+AGG | - | chr4_2:70055182-70055201 | Msa0619050:CDS | 45.0% | |
| ACCAAAGGTTACGAAGGATG+GGG | - | chr4_2:70055197-70055216 | Msa0619050:CDS | 45.0% | |
| CACTGTTGAAACCAAAGTGG+AGG | - | chr4_2:70055263-70055282 | Msa0619050:CDS | 45.0% | |
| CAAGAGCAATTGTTGCAGAG+TGG | - | chr4_2:70055294-70055313 | Msa0619050:CDS | 45.0% | |
| !! | ATCGTGTTGGCTTAGGACAT+AGG | + | chr4_2:70055803-70055822 | None:intergenic | 45.0% |
| !! | TAGCTTGATCGTGTTGGCTT+AGG | + | chr4_2:70055810-70055829 | None:intergenic | 45.0% |
| AATGTCAATTCTTGGCTGCG+AGG | - | chr4_2:70055990-70056009 | Msa0619050:intron | 45.0% | |
| ATGTCAATTCTTGGCTGCGA+GGG | - | chr4_2:70055991-70056010 | Msa0619050:intron | 45.0% | |
| AACATGAGTGGTCCCATATC+GGG | + | chr4_2:70056050-70056069 | None:intergenic | 45.0% | |
| ATGCCAATGCTTAGGTGTGA+GGG | - | chr4_2:70056076-70056095 | Msa0619050:intron | 45.0% | |
| ACAAATAGGGGCCTCCAAAA+GGG | + | chr4_2:70056735-70056754 | None:intergenic | 45.0% | |
| AACAAATAGGGGCCTCCAAA+AGG | + | chr4_2:70056736-70056755 | None:intergenic | 45.0% | |
| GGTGGGATCTGAACAAATAG+GGG | + | chr4_2:70056747-70056766 | None:intergenic | 45.0% | |
| GGGTGGGATCTGAACAAATA+GGG | + | chr4_2:70056748-70056767 | None:intergenic | 45.0% | |
| TATTTGGCGGAAATCAAGGG+AGG | - | chr4_2:70057125-70057144 | Msa0619050:intron | 45.0% | |
| GTGAACTTAGCTCAGTTGGT+AGG | + | chr4_2:70057728-70057747 | None:intergenic | 45.0% | |
| TGGTAGTAAGGAATATGGGC+TGG | - | chr4_2:70057938-70057957 | Msa0619050:intron | 45.0% | |
| GGTAGTAAGGAATATGGGCT+GGG | - | chr4_2:70057939-70057958 | Msa0619050:intron | 45.0% | |
| GAGAGGAAACCCATTAAAGG+TGG | + | chr4_2:70058698-70058717 | None:intergenic | 45.0% | |
| TGCGAGAGGAAACCCATTAA+AGG | + | chr4_2:70058701-70058720 | None:intergenic | 45.0% | |
| ACTTCAATCACTTTCTCCGC+AGG | + | chr4_2:70059459-70059478 | None:intergenic | 45.0% | |
| TGCGGAGAAAGTGATTGAAG+TGG | - | chr4_2:70059458-70059477 | Msa0619050:CDS | 45.0% | |
| GATGTGAAAAGAGGAGAGGC+TGG | + | chr4_2:70054876-70054895 | None:intergenic | 50.0% | |
| !! | TCTTGGTGCCAGAACACCAA+AGG | - | chr4_2:70054993-70055012 | Msa0619050:three_prime_UTR | 50.0% |
| CCAAAGGTTACGAAGGATGG+GGG | - | chr4_2:70055198-70055217 | Msa0619050:CDS | 50.0% | |
| GATGCCAATGCTTAGGTGTG+AGG | - | chr4_2:70056075-70056094 | Msa0619050:intron | 50.0% | |
| !! | CAAAGGTGCAACCCTTTTGG+AGG | - | chr4_2:70056721-70056740 | Msa0619050:intron | 50.0% |
| GGGGTGGGATCTGAACAAAT+AGG | + | chr4_2:70056749-70056768 | None:intergenic | 50.0% | |
| TAACTAGTGTGCGTGTCCCA+CGG | - | chr4_2:70056817-70056836 | Msa0619050:intron | 50.0% | |
| GCGGAAATCAAGGGAGGTAA+TGG | - | chr4_2:70057131-70057150 | Msa0619050:intron | 50.0% | |
| AAGGAGCTATGAGTGACGAG+TGG | - | chr4_2:70057335-70057354 | Msa0619050:intron | 50.0% | |
| AGCTATGAGTGACGAGTGGT+AGG | - | chr4_2:70057339-70057358 | Msa0619050:intron | 50.0% | |
| CCTCGTGAACTTAGCTCAGT+TGG | + | chr4_2:70057732-70057751 | None:intergenic | 50.0% | |
| CCAACTGAGCTAAGTTCACG+AGG | - | chr4_2:70057729-70057748 | Msa0619050:intron | 50.0% | |
| TGAGCTAAGTTCACGAGGAC+AGG | - | chr4_2:70057734-70057753 | Msa0619050:intron | 50.0% | |
| TTCTGACATCAAGGCCCAGA+TGG | + | chr4_2:70057982-70058001 | None:intergenic | 50.0% | |
| GGTGGGTGGAGATAGTAGAT+TGG | + | chr4_2:70058027-70058046 | None:intergenic | 50.0% | |
| ! | GGTTATTGTCCTCTAGGGGT+GGG | + | chr4_2:70058044-70058063 | None:intergenic | 50.0% |
| TTCACAATCTCTTCGGCAGC+TGG | + | chr4_2:70059186-70059205 | None:intergenic | 50.0% | |
| TCAATCACTTTCTCCGCAGG+TGG | + | chr4_2:70059456-70059475 | None:intergenic | 50.0% | |
| ACTGTCAGCATCAGAAGCCT+TGG | + | chr4_2:70059568-70059587 | None:intergenic | 50.0% | |
| ACGACGACTTTGCAGCTACA+CGG | + | chr4_2:70059636-70059655 | None:intergenic | 50.0% | |
| GAAAAGAGGAGAGGCTGGAG+TGG | + | chr4_2:70054871-70054890 | None:intergenic | 55.0% | |
| CCCCCATCCTTCGTAACCTT+TGG | + | chr4_2:70055201-70055220 | None:intergenic | 55.0% | |
| !! | GGATGGGGGTGTTGATGTGA+AGG | - | chr4_2:70055212-70055231 | Msa0619050:CDS | 55.0% |
| !! | GAAGGCACCTGAACCAGAAC+AGG | - | chr4_2:70055230-70055249 | Msa0619050:CDS | 55.0% |
| TCGCCCTCACACCTAAGCAT+TGG | + | chr4_2:70056082-70056101 | None:intergenic | 55.0% | |
| GAGTGACGAGTGGTAGGTAG+CGG | - | chr4_2:70057345-70057364 | Msa0619050:intron | 55.0% | |
| AGTGACGAGTGGTAGGTAGC+GGG | - | chr4_2:70057346-70057365 | Msa0619050:intron | 55.0% | |
| TGCATGGAGCTGCTCACTGA+TGG | - | chr4_2:70057388-70057407 | Msa0619050:intron | 55.0% | |
| GACATCAAGGCCCAGATGGT+AGG | + | chr4_2:70057978-70057997 | None:intergenic | 55.0% | |
| ! | TATTGTCCTCTAGGGGTGGG+TGG | + | chr4_2:70058041-70058060 | None:intergenic | 55.0% |
| ! | GGGTTATTGTCCTCTAGGGG+TGG | + | chr4_2:70058045-70058064 | None:intergenic | 55.0% |
| ATCACTTTCTCCGCAGGTGG+AGG | + | chr4_2:70059453-70059472 | None:intergenic | 55.0% | |
| AGGAGAGGCTGGAGTGGAAG+TGG | + | chr4_2:70054865-70054884 | None:intergenic | 60.0% | |
| CTATCTCCACCCACCCCTAG+AGG | - | chr4_2:70058032-70058051 | Msa0619050:intron | 60.0% | |
| TGTGGTGGTTCCTCCACCTG+CGG | - | chr4_2:70059440-70059459 | Msa0619050:CDS | 60.0% | |
| TGCAGCCGGTTGTAGACCGT+TGG | + | chr4_2:70059613-70059632 | None:intergenic | 60.0% | |
| TTGCAGCTACACGGTGCAGC+CGG | + | chr4_2:70059627-70059646 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 70054861 | 70059872 | 70054861 | ID=Msa0619050;Name=Msa0619050 |
| chr4_2 | mRNA | 70054861 | 70059872 | 70054861 | ID=Msa0619050-mRNA-1;Parent=Msa0619050;Name=Msa0619050-mRNA-1;_AED=0.05;_eAED=0.05;_QI=316|1|1|1|0.5|0.33|3|218|302 |
| chr4_2 | exon | 70054861 | 70054937 | 70054861 | ID=Msa0619050-mRNA-1:exon:20349;Parent=Msa0619050-mRNA-1 |
| chr4_2 | exon | 70054984 | 70055811 | 70054984 | ID=Msa0619050-mRNA-1:exon:20348;Parent=Msa0619050-mRNA-1 |
| chr4_2 | exon | 70059335 | 70059872 | 70059335 | ID=Msa0619050-mRNA-1:exon:20347;Parent=Msa0619050-mRNA-1 |
| chr4_2 | five_prime_UTR | 70059557 | 70059872 | 70059557 | ID=Msa0619050-mRNA-1:five_prime_utr;Parent=Msa0619050-mRNA-1 |
| chr4_2 | CDS | 70059335 | 70059556 | 70059335 | ID=Msa0619050-mRNA-1:cds;Parent=Msa0619050-mRNA-1 |
| chr4_2 | CDS | 70055125 | 70055811 | 70055125 | ID=Msa0619050-mRNA-1:cds;Parent=Msa0619050-mRNA-1 |
| chr4_2 | three_prime_UTR | 70054984 | 70055124 | 70054984 | ID=Msa0619050-mRNA-1:three_prime_utr;Parent=Msa0619050-mRNA-1 |
| chr4_2 | three_prime_UTR | 70054861 | 70054937 | 70054861 | ID=Msa0619050-mRNA-1:three_prime_utr;Parent=Msa0619050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
