Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1236160 | XP_003592818.2 | 93.750 | 384 | 10 | 2 | 1 | 384 | 1 | 370 | 0.0 | 734 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1236160 | sp|Q9M841|PEX12_ARATH | 67.939 | 393 | 115 | 3 | 1 | 383 | 1 | 392 | 0.0 | 547 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1236160 | A0A396JWQ9 | 93.750 | 384 | 10 | 2 | 1 | 384 | 1 | 370 | 0.0 | 734 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028930 | Msa1236160 | -0.824446 | 8.038568e-54 | -8.615850e-47 |
| Msa0030160 | Msa1236160 | -0.801775 | 7.680016e-49 | -8.615850e-47 |
| Msa0035120 | Msa1236160 | -0.802346 | 5.859999e-49 | -8.615850e-47 |
| Msa0046110 | Msa1236160 | 0.807183 | 5.723245e-50 | -8.615850e-47 |
| Msa0050820 | Msa1236160 | -0.808633 | 2.814014e-50 | -8.615850e-47 |
| Msa0054480 | Msa1236160 | -0.804088 | 2.555231e-49 | -8.615850e-47 |
| Msa0054820 | Msa1236160 | -0.825624 | 4.234265e-54 | -8.615850e-47 |
| Msa0071250 | Msa1236160 | -0.826685 | 2.368868e-54 | -8.615850e-47 |
| Msa0092410 | Msa1236160 | -0.814585 | 1.429270e-51 | -8.615850e-47 |
| Msa0100160 | Msa1236160 | -0.812230 | 4.706692e-51 | -8.615850e-47 |
| Msa0106620 | Msa1236160 | -0.864825 | 9.200561e-65 | -8.615850e-47 |
| Msa0106710 | Msa1236160 | -0.868688 | 5.422395e-66 | -8.615850e-47 |
| Msa0108410 | Msa1236160 | -0.836676 | 8.137951e-57 | -8.615850e-47 |
| Msa0115400 | Msa1236160 | -0.816488 | 5.388423e-52 | -8.615850e-47 |
| Msa0618970 | Msa1236160 | -0.808738 | 2.672820e-50 | -8.615850e-47 |
| Msa0619050 | Msa1236160 | -0.808214 | 3.457677e-50 | -8.615850e-47 |
| Msa0652690 | Msa1236160 | -0.829796 | 4.213007e-55 | -8.615850e-47 |
| Msa0655920 | Msa1236160 | -0.800241 | 1.580696e-48 | -8.615850e-47 |
| Msa0656000 | Msa1236160 | -0.813835 | 2.092980e-51 | -8.615850e-47 |
| Msa0658590 | Msa1236160 | -0.850529 | 1.600820e-60 | -8.615850e-47 |
| Msa0673120 | Msa1236160 | -0.813453 | 2.540193e-51 | -8.615850e-47 |
| Msa0698290 | Msa1236160 | -0.813877 | 2.048539e-51 | -8.615850e-47 |
| Msa0703440 | Msa1236160 | -0.809963 | 1.459128e-50 | -8.615850e-47 |
| Msa0705990 | Msa1236160 | -0.809212 | 2.116100e-50 | -8.615850e-47 |
| Msa0712560 | Msa1236160 | -0.808598 | 2.863109e-50 | -8.615850e-47 |
| Msa0713510 | Msa1236160 | -0.811890 | 5.582730e-51 | -8.615850e-47 |
| Msa0733010 | Msa1236160 | -0.824374 | 8.357287e-54 | -8.615850e-47 |
| Msa0751260 | Msa1236160 | -0.802817 | 4.686939e-49 | -8.615850e-47 |
| Msa0769300 | Msa1236160 | -0.800627 | 1.318895e-48 | -8.615850e-47 |
| Msa0795070 | Msa1236160 | -0.800023 | 1.750171e-48 | -8.615850e-47 |
| Msa0797250 | Msa1236160 | -0.811774 | 5.916592e-51 | -8.615850e-47 |
| Msa0817460 | Msa1236160 | -0.821955 | 3.066669e-53 | -8.615850e-47 |
| Msa0817650 | Msa1236160 | -0.802829 | 4.658119e-49 | -8.615850e-47 |
| Msa0822500 | Msa1236160 | -0.815308 | 9.879924e-52 | -8.615850e-47 |
| Msa0124450 | Msa1236160 | -0.813258 | 2.803853e-51 | -8.615850e-47 |
| Msa0127100 | Msa1236160 | -0.813429 | 2.571146e-51 | -8.615850e-47 |
| Msa0140500 | Msa1236160 | 0.807715 | 4.414679e-50 | -8.615850e-47 |
| Msa0144530 | Msa1236160 | -0.826224 | 3.050786e-54 | -8.615850e-47 |
| Msa0150860 | Msa1236160 | -0.800604 | 1.333128e-48 | -8.615850e-47 |
| Msa0179190 | Msa1236160 | -0.826631 | 2.440416e-54 | -8.615850e-47 |
| Msa0183760 | Msa1236160 | -0.818239 | 2.174524e-52 | -8.615850e-47 |
| Msa0188150 | Msa1236160 | -0.804265 | 2.346821e-49 | -8.615850e-47 |
| Msa0189040 | Msa1236160 | -0.816590 | 5.112249e-52 | -8.615850e-47 |
| Msa0189710 | Msa1236160 | -0.824541 | 7.632227e-54 | -8.615850e-47 |
| Msa0204840 | Msa1236160 | -0.809103 | 2.232642e-50 | -8.615850e-47 |
| Msa0205010 | Msa1236160 | -0.820414 | 6.946416e-53 | -8.615850e-47 |
| Msa0206830 | Msa1236160 | -0.814441 | 1.538513e-51 | -8.615850e-47 |
| Msa0217700 | Msa1236160 | -0.811361 | 7.274560e-51 | -8.615850e-47 |
| Msa0220730 | Msa1236160 | -0.821986 | 3.015952e-53 | -8.615850e-47 |
| Msa0225100 | Msa1236160 | -0.811208 | 7.854273e-51 | -8.615850e-47 |
| Msa0225220 | Msa1236160 | -0.811731 | 6.044905e-51 | -8.615850e-47 |
| Msa0232020 | Msa1236160 | -0.848777 | 4.937157e-60 | -8.615850e-47 |
| Msa0232090 | Msa1236160 | -0.821611 | 3.683558e-53 | -8.615850e-47 |
| Msa0237210 | Msa1236160 | -0.853337 | 2.553639e-61 | -8.615850e-47 |
| Msa1225860 | Msa1236160 | 0.872566 | 2.883082e-67 | -8.615850e-47 |
| Msa1226470 | Msa1236160 | -0.852498 | 4.438949e-61 | -8.615850e-47 |
| Msa1227150 | Msa1236160 | -0.804499 | 2.097708e-49 | -8.615850e-47 |
| Msa1236110 | Msa1236160 | 0.856834 | 2.461011e-62 | -8.615850e-47 |
| Msa1236160 | Msa1238820 | -0.806104 | 9.670529e-50 | -8.615850e-47 |
| Msa1236160 | Msa1246360 | -0.844546 | 7.068626e-59 | -8.615850e-47 |
| Msa1236160 | Msa1277080 | -0.804384 | 2.217226e-49 | -8.615850e-47 |
| Msa1236160 | Msa1283740 | -0.814707 | 1.342964e-51 | -8.615850e-47 |
| Msa1236160 | Msa1303070 | -0.836369 | 9.744585e-57 | -8.615850e-47 |
| Msa1236160 | Msa1325410 | 0.860936 | 1.458937e-63 | -8.615850e-47 |
| Msa1236160 | Msa1329050 | 0.824307 | 8.664829e-54 | -8.615850e-47 |
| Msa1236160 | Msa1332050 | -0.803426 | 3.505828e-49 | -8.615850e-47 |
| Msa1236160 | Msa1340200 | -0.844233 | 8.584972e-59 | -8.615850e-47 |
| Msa1236160 | Msa1341840 | -0.802562 | 5.288214e-49 | -8.615850e-47 |
| Msa1236160 | Msa1345810 | -0.842219 | 2.956340e-58 | -8.615850e-47 |
| Msa1236160 | Msa1346840 | -0.801363 | 9.326003e-49 | -8.615850e-47 |
| Msa1236160 | Msa1349520 | -0.832621 | 8.516711e-56 | -8.615850e-47 |
| Msa1236160 | Msa1359560 | -0.818219 | 2.197479e-52 | -8.615850e-47 |
| Msa1236160 | Msa1383530 | -0.825392 | 4.805312e-54 | -8.615850e-47 |
| Msa1236160 | Msa1393840 | 0.974467 | 3.306108e-138 | -8.615850e-47 |
| Msa1236160 | Msa1407190 | -0.816764 | 4.672965e-52 | -8.615850e-47 |
| Msa1236160 | Msa1413380 | -0.814252 | 1.693994e-51 | -8.615850e-47 |
| Msa1236160 | Msa1413610 | -0.800629 | 1.317499e-48 | -8.615850e-47 |
| Msa1236160 | Msa1416370 | -0.812618 | 3.871927e-51 | -8.615850e-47 |
| Msa1236160 | Msa1430550 | -0.805463 | 1.318852e-49 | -8.615850e-47 |
| Msa1236160 | Msa1432130 | -0.820564 | 6.417474e-53 | -8.615850e-47 |
| Msa1236160 | Msa1434090 | -0.801003 | 1.105060e-48 | -8.615850e-47 |
| Msa1236160 | Msa1440310 | -0.830903 | 2.259594e-55 | -8.615850e-47 |
| Msa1236160 | Msa1445390 | 0.808579 | 2.889830e-50 | -8.615850e-47 |
| Msa1236160 | Msa1446780 | -0.816686 | 4.865863e-52 | -8.615850e-47 |
| Msa1236160 | Msa1449340 | 0.803084 | 4.126981e-49 | -8.615850e-47 |
| Msa1236160 | Msa1452710 | -0.806522 | 7.896137e-50 | -8.615850e-47 |
| Msa1236160 | Msa1462360 | -0.820341 | 7.219613e-53 | -8.615850e-47 |
| Msa1236160 | Msa1464090 | -0.822974 | 1.777317e-53 | -8.615850e-47 |
| Msa0372810 | Msa1236160 | -0.829813 | 4.172785e-55 | -8.615850e-47 |
| Msa0378970 | Msa1236160 | -0.836791 | 7.608354e-57 | -8.615850e-47 |
| Msa0381610 | Msa1236160 | 0.801664 | 8.090939e-49 | -8.615850e-47 |
| Msa0389910 | Msa1236160 | -0.862205 | 5.974416e-64 | -8.615850e-47 |
| Msa0403640 | Msa1236160 | -0.835538 | 1.582641e-56 | -8.615850e-47 |
| Msa0411430 | Msa1236160 | -0.807455 | 5.013772e-50 | -8.615850e-47 |
| Msa0422180 | Msa1236160 | -0.800061 | 1.719495e-48 | -8.615850e-47 |
| Msa0427120 | Msa1236160 | -0.802336 | 5.888414e-49 | -8.615850e-47 |
| Msa0428580 | Msa1236160 | -0.837721 | 4.396643e-57 | -8.615850e-47 |
| Msa0450400 | Msa1236160 | 0.849081 | 4.066206e-60 | -8.615850e-47 |
| Msa0468410 | Msa1236160 | -0.806523 | 7.891707e-50 | -8.615850e-47 |
| Msa0474940 | Msa1236160 | -0.836360 | 9.795031e-57 | -8.615850e-47 |
| Msa0476680 | Msa1236160 | -0.809807 | 1.576524e-50 | -8.615850e-47 |
| Msa0480780 | Msa1236160 | -0.829721 | 4.392207e-55 | -8.615850e-47 |
| Msa0481970 | Msa1236160 | -0.819921 | 9.007369e-53 | -8.615850e-47 |
| Msa0986510 | Msa1236160 | -0.819969 | 8.783238e-53 | -8.615850e-47 |
| Msa1034500 | Msa1236160 | -0.838560 | 2.674142e-57 | -8.615850e-47 |
| Msa1036610 | Msa1236160 | -0.815479 | 9.052275e-52 | -8.615850e-47 |
| Msa1038080 | Msa1236160 | -0.803377 | 3.588309e-49 | -8.615850e-47 |
| Msa1063420 | Msa1236160 | -0.819765 | 9.780078e-53 | -8.615850e-47 |
| Msa1071180 | Msa1236160 | 0.850073 | 2.149283e-60 | -8.615850e-47 |
| Msa1080490 | Msa1236160 | -0.836434 | 9.379816e-57 | -8.615850e-47 |
| Msa1088410 | Msa1236160 | -0.811435 | 7.011460e-51 | -8.615850e-47 |
| Msa1089450 | Msa1236160 | -0.817299 | 3.543223e-52 | -8.615850e-47 |
| Msa0240900 | Msa1236160 | -0.815968 | 7.042806e-52 | -8.615850e-47 |
| Msa0241140 | Msa1236160 | -0.839352 | 1.667653e-57 | -8.615850e-47 |
| Msa0266180 | Msa1236160 | -0.806487 | 8.033512e-50 | -8.615850e-47 |
| Msa0267370 | Msa1236160 | -0.810433 | 1.155614e-50 | -8.615850e-47 |
| Msa0267790 | Msa1236160 | -0.800553 | 1.365680e-48 | -8.615850e-47 |
| Msa0269560 | Msa1236160 | -0.815065 | 1.118797e-51 | -8.615850e-47 |
| Msa0274980 | Msa1236160 | -0.839519 | 1.509826e-57 | -8.615850e-47 |
| Msa0278450 | Msa1236160 | -0.815551 | 8.723207e-52 | -8.615850e-47 |
| Msa0287740 | Msa1236160 | -0.808029 | 3.785223e-50 | -8.615850e-47 |
| Msa0295460 | Msa1236160 | 0.841961 | 3.458795e-58 | -8.615850e-47 |
| Msa0296050 | Msa1236160 | 0.820443 | 6.840930e-53 | -8.615850e-47 |
| Msa0307310 | Msa1236160 | -0.800799 | 1.216352e-48 | -8.615850e-47 |
| Msa0310090 | Msa1236160 | -0.825812 | 3.821789e-54 | -8.615850e-47 |
| Msa0315690 | Msa1236160 | -0.857222 | 1.891125e-62 | -8.615850e-47 |
| Msa0317970 | Msa1236160 | -0.834282 | 3.280119e-56 | -8.615850e-47 |
| Msa0322900 | Msa1236160 | -0.807952 | 3.931507e-50 | -8.615850e-47 |
| Msa0328080 | Msa1236160 | -0.801130 | 1.040829e-48 | -8.615850e-47 |
| Msa0333970 | Msa1236160 | 0.832682 | 8.221658e-56 | -8.615850e-47 |
| Msa0341840 | Msa1236160 | -0.823215 | 1.561572e-53 | -8.615850e-47 |
| Msa0342010 | Msa1236160 | -0.819774 | 9.732784e-53 | -8.615850e-47 |
| Msa0347950 | Msa1236160 | -0.809678 | 1.680049e-50 | -8.615850e-47 |
| Msa0347990 | Msa1236160 | -0.805147 | 1.536104e-49 | -8.615850e-47 |
| Msa0358890 | Msa1236160 | -0.818523 | 1.874916e-52 | -8.615850e-47 |
| Msa1126240 | Msa1236160 | -0.821185 | 4.618713e-53 | -8.615850e-47 |
| Msa1132480 | Msa1236160 | -0.822524 | 2.262723e-53 | -8.615850e-47 |
| Msa1143020 | Msa1236160 | -0.802290 | 6.016727e-49 | -8.615850e-47 |
| Msa1145810 | Msa1236160 | -0.810133 | 1.341125e-50 | -8.615850e-47 |
| Msa1155170 | Msa1236160 | 0.859394 | 4.263195e-63 | -8.615850e-47 |
| Msa1158390 | Msa1236160 | -0.805976 | 1.028943e-49 | -8.615850e-47 |
| Msa1161810 | Msa1236160 | -0.808780 | 2.617073e-50 | -8.615850e-47 |
| Msa1162780 | Msa1236160 | -0.828588 | 8.271047e-55 | -8.615850e-47 |
| Msa1167010 | Msa1236160 | -0.810321 | 1.221957e-50 | -8.615850e-47 |
| Msa1170350 | Msa1236160 | -0.810326 | 1.218758e-50 | -8.615850e-47 |
| Msa1204100 | Msa1236160 | 0.812522 | 4.063474e-51 | -8.615850e-47 |
| Msa1218450 | Msa1236160 | -0.816535 | 5.260800e-52 | -8.615850e-47 |
| Msa1219000 | Msa1236160 | -0.800078 | 1.705836e-48 | -8.615850e-47 |
| Msa0517640 | Msa1236160 | -0.817601 | 3.029486e-52 | -8.615850e-47 |
| Msa0521010 | Msa1236160 | -0.811932 | 5.467569e-51 | -8.615850e-47 |
| Msa0521670 | Msa1236160 | -0.832698 | 8.150954e-56 | -8.615850e-47 |
| Msa0532960 | Msa1236160 | -0.830316 | 3.145474e-55 | -8.615850e-47 |
| Msa0542490 | Msa1236160 | -0.806374 | 8.487034e-50 | -8.615850e-47 |
| Msa0562570 | Msa1236160 | -0.838945 | 2.127222e-57 | -8.615850e-47 |
| Msa0576680 | Msa1236160 | -0.803052 | 4.189323e-49 | -8.615850e-47 |
| Msa0579660 | Msa1236160 | -0.822169 | 2.734567e-53 | -8.615850e-47 |
| Msa0583360 | Msa1236160 | 0.865731 | 4.775196e-65 | -8.615850e-47 |
| Msa0585560 | Msa1236160 | -0.805181 | 1.511133e-49 | -8.615850e-47 |
| Msa0588090 | Msa1236160 | -0.816869 | 4.427889e-52 | -8.615850e-47 |
| Msa0594050 | Msa1236160 | -0.808005 | 3.830922e-50 | -8.615850e-47 |
| Msa0601950 | Msa1236160 | -0.820047 | 8.430196e-53 | -8.615850e-47 |
| Msa0844110 | Msa1236160 | -0.800415 | 1.456758e-48 | -8.615850e-47 |
| Msa0863720 | Msa1236160 | -0.808336 | 3.255380e-50 | -8.615850e-47 |
| Msa0894400 | Msa1236160 | -0.806012 | 1.011279e-49 | -8.615850e-47 |
| Msa0894710 | Msa1236160 | -0.805356 | 1.388864e-49 | -8.615850e-47 |
| Msa0902830 | Msa1236160 | -0.841182 | 5.547298e-58 | -8.615850e-47 |
| Msa0921000 | Msa1236160 | -0.802037 | 6.783295e-49 | -8.615850e-47 |
| Msa0921420 | Msa1236160 | -0.822002 | 2.989403e-53 | -8.615850e-47 |
| Msa0933760 | Msa1236160 | -0.845861 | 3.119224e-59 | -8.615850e-47 |
| Msa0934140 | Msa1236160 | -0.856284 | 3.569473e-62 | -8.615850e-47 |
| Msa0936390 | Msa1236160 | -0.808804 | 2.586423e-50 | -8.615850e-47 |
| Msa0945240 | Msa1236160 | -0.832608 | 8.580001e-56 | -8.615850e-47 |
| Msa0960390 | Msa1236160 | -0.806422 | 8.289434e-50 | -8.615850e-47 |
| Msa0964310 | Msa1236160 | -0.806628 | 7.498758e-50 | -8.615850e-47 |
| Msa0965290 | Msa1236160 | -0.803301 | 3.722222e-49 | -8.615850e-47 |
| Msa0971650 | Msa1236160 | -0.815352 | 9.661737e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1236160 | MtrunA17_Chr1g0213441 | 93.750 | 384 | 10 | 2 | 1 | 384 | 1 | 370 | 0.0 | 734 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1236160 | AT3G04460.1 | 67.939 | 393 | 115 | 3 | 1 | 383 | 1 | 392 | 0.0 | 547 |
| Msa1236160 | AT3G04460.2 | 63.056 | 360 | 111 | 5 | 1 | 350 | 1 | 348 | 1.44e-151 | 434 |
Find 105 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATCTGTAATGACAGTTTC+GGG | 0.215838 | 8_2:-14623910 | Msa1236160:CDS |
| GATCATCGAGATGTTGTTTC+AGG | 0.247590 | 8_2:-14626991 | None:intergenic |
| AGTAAATGTTTACCAGTTCT+TGG | 0.256616 | 8_2:+14626106 | None:intergenic |
| ACCTTTGGTGGTGGAGGAGG+AGG | 0.259002 | 8_2:+14624255 | None:intergenic |
| TCTTTCTCTGAATCCCTTTA+CGG | 0.287351 | 8_2:-14626762 | Msa1236160:CDS |
| CGGTAACTGTACCCCTTCTT+TGG | 0.289874 | 8_2:+14623978 | None:intergenic |
| AAGGATTCAGGCCACTCTTT+GGG | 0.294501 | 8_2:-14626456 | Msa1236160:CDS |
| AAAAGATTTCAGAACATTGT+AGG | 0.315747 | 8_2:-14626353 | Msa1236160:CDS |
| TCCATCTGTAATGACAGTTT+CGG | 0.340942 | 8_2:-14623911 | Msa1236160:CDS |
| CTTTGGTGGTGGAGGAGGAG+GGG | 0.345450 | 8_2:+14624257 | None:intergenic |
| GTTGCAGGCACCATCGTTGC+TGG | 0.349075 | 8_2:+14623391 | None:intergenic |
| ATTTGTCTCTTTACCTTTGG+TGG | 0.354030 | 8_2:+14624243 | None:intergenic |
| CTCTTTACCTTTGGTGGTGG+AGG | 0.355800 | 8_2:+14624249 | None:intergenic |
| TTTGGTGGTGGAGGAGGAGG+GGG | 0.357847 | 8_2:+14624258 | None:intergenic |
| CAAGGATTCAGGCCACTCTT+TGG | 0.359885 | 8_2:-14626457 | Msa1236160:CDS |
| CTTATCTGATCAACTGTTGC+AGG | 0.364548 | 8_2:+14623376 | None:intergenic |
| AGAAAGAGAAGCAAGGATTC+AGG | 0.364878 | 8_2:-14626468 | Msa1236160:CDS |
| AGAGAAGAGAAAGAAGCTTT+TGG | 0.369480 | 8_2:+14626643 | None:intergenic |
| AAGTTCTAACAATAAGATTA+TGG | 0.381002 | 8_2:-14623180 | Msa1236160:three_prime_UTR |
| ATACCAGATGTTATACCTAT+TGG | 0.382316 | 8_2:-14626193 | Msa1236160:CDS |
| CATATACTCATGACAACTAT+AGG | 0.401993 | 8_2:+14623311 | None:intergenic |
| CCGTGGTCCTCAATGGATAA+AGG | 0.402747 | 8_2:-14625416 | Msa1236160:intron |
| TTTACCTTTGGTGGTGGAGG+AGG | 0.411857 | 8_2:+14624252 | None:intergenic |
| ATAACATCTGGTATGCGAAT+TGG | 0.415352 | 8_2:+14626202 | None:intergenic |
| TTTCACAATGCAGACATTGC+AGG | 0.422363 | 8_2:-14625074 | Msa1236160:intron |
| ATGCAGCTTCGATTTCAGAT+AGG | 0.427187 | 8_2:+14626505 | None:intergenic |
| GTCTTCTACGGAGGCCGTAA+AGG | 0.431086 | 8_2:+14626748 | None:intergenic |
| ATTCATGTCTGCCGAGCTAC+TGG | 0.437858 | 8_2:-14626129 | Msa1236160:CDS |
| TTATACCTATTGGATGCTAC+TGG | 0.443662 | 8_2:-14626183 | Msa1236160:CDS |
| TATATTCAAGTTTGTTACTC+AGG | 0.446187 | 8_2:-14623866 | Msa1236160:intron |
| CCACGCCAACCTTCAATGCT+CGG | 0.446234 | 8_2:-14626400 | Msa1236160:CDS |
| TCACTAGCGCTGCACGCACT+TGG | 0.452512 | 8_2:-14626153 | Msa1236160:CDS |
| AACGGAGGCCCGAGCATTGA+AGG | 0.453089 | 8_2:+14626391 | None:intergenic |
| TGTCTCTTTACCTTTGGTGG+TGG | 0.453626 | 8_2:+14624246 | None:intergenic |
| TTTGAACAGGTTGCCAAAGA+AGG | 0.454619 | 8_2:-14623991 | Msa1236160:intron |
| CCGAGCTACTGGCCAAGAAC+TGG | 0.462234 | 8_2:-14626118 | Msa1236160:intron |
| CACGCCAACCTTCAATGCTC+GGG | 0.466852 | 8_2:-14626399 | Msa1236160:CDS |
| CCTTTGGTGGTGGAGGAGGA+GGG | 0.467987 | 8_2:+14624256 | None:intergenic |
| TTGAACAGGTTGCCAAAGAA+GGG | 0.468952 | 8_2:-14623990 | Msa1236160:intron |
| AGTACCCAGTAGCATCCAAT+AGG | 0.480194 | 8_2:+14626178 | None:intergenic |
| CGCGCTTCTGCAAGCACAGG+GGG | 0.480911 | 8_2:+14623938 | None:intergenic |
| TCTTCTACGGAGGCCGTAAA+GGG | 0.485693 | 8_2:+14626749 | None:intergenic |
| CGTAATCTAATAATTTATGA+AGG | 0.488919 | 8_2:+14626850 | None:intergenic |
| TGCAGCTTCGATTTCAGATA+GGG | 0.489267 | 8_2:+14626506 | None:intergenic |
| AGATATTAGCGGGTCTTCTA+CGG | 0.493212 | 8_2:+14626736 | None:intergenic |
| TTGTTTCAGGTGGGCGGACA+AGG | 0.494695 | 8_2:-14626978 | Msa1236160:CDS |
| CATCGAGATGTTGTTTCAGG+TGG | 0.496439 | 8_2:-14626988 | None:intergenic |
| CTGCAACAGTTGATCAGATA+AGG | 0.503019 | 8_2:-14623375 | Msa1236160:CDS |
| AGAGACTCCGTGGTCCTCAA+TGG | 0.507233 | 8_2:-14625423 | Msa1236160:CDS |
| GTACTTGACTATGCGCAAAC+CGG | 0.509782 | 8_2:-14625025 | Msa1236160:CDS |
| CACTAGCGCTGCACGCACTT+GGG | 0.511045 | 8_2:-14626152 | Msa1236160:CDS |
| CATCCAATAGGTATAACATC+TGG | 0.511226 | 8_2:+14626190 | None:intergenic |
| CCAGTTCTTGGCCAGTAGCT+CGG | 0.513806 | 8_2:+14626118 | None:intergenic |
| TTACGCGCTTCTGCAAGCAC+AGG | 0.516034 | 8_2:+14623935 | None:intergenic |
| TTCACAATGCAGACATTGCA+GGG | 0.516616 | 8_2:-14625073 | Msa1236160:intron |
| TACGCGCTTCTGCAAGCACA+GGG | 0.518671 | 8_2:+14623936 | None:intergenic |
| TCTAATAATTTATGAAGGAA+AGG | 0.519350 | 8_2:+14626855 | None:intergenic |
| CCCGAAACTGTCATTACAGA+TGG | 0.519603 | 8_2:+14623910 | None:intergenic |
| CAGTACCAGCATGTAACAAT+GGG | 0.521765 | 8_2:+14626321 | None:intergenic |
| ATGCAAACCTTTATCCATTG+AGG | 0.525430 | 8_2:+14625409 | None:intergenic |
| TGTTACCCATTGTTACATGC+TGG | 0.527089 | 8_2:-14626326 | Msa1236160:CDS |
| TGTCATGAGTATATGTGTAA+AGG | 0.530790 | 8_2:-14623303 | Msa1236160:three_prime_UTR |
| TTGCAGGCACCATCGTTGCT+GGG | 0.531633 | 8_2:+14623392 | None:intergenic |
| AAATGAATCATATGATTCTA+CGG | 0.537110 | 8_2:-14626426 | Msa1236160:CDS |
| CCCTCCTCCTCCACCACCAA+AGG | 0.539167 | 8_2:-14624256 | Msa1236160:intron |
| ATGACAACTATAGGTATAGC+AGG | 0.557670 | 8_2:+14623320 | None:intergenic |
| TCATGATGTATAGTCCGAGC+TGG | 0.557723 | 8_2:-14623344 | Msa1236160:exon |
| TCGGCCGACGTTCTTCGAGA+TGG | 0.557939 | 8_2:-14626952 | Msa1236160:CDS |
| GCGGCGCTGACATACTCAAT+CGG | 0.561785 | 8_2:-14626897 | Msa1236160:CDS |
| TTGTTACATGCTGGTACTGA+AGG | 0.562098 | 8_2:-14626317 | Msa1236160:intron |
| TTGAGTAATGAGATATTAGC+GGG | 0.563261 | 8_2:+14626726 | None:intergenic |
| ATCGAGATGTTGTTTCAGGT+GGG | 0.568368 | 8_2:-14626987 | None:intergenic |
| TATACCTATTGGATGCTACT+GGG | 0.579299 | 8_2:-14626182 | Msa1236160:CDS |
| CACGGAGTCTCTCACGTTCA+CGG | 0.579735 | 8_2:+14625434 | None:intergenic |
| TAACAATAAGATTATGGCCA+CGG | 0.580373 | 8_2:-14623174 | Msa1236160:three_prime_UTR |
| GAGGCCCGAGCATTGAAGGT+TGG | 0.582960 | 8_2:+14626395 | None:intergenic |
| TAAGCGCTGCCCAGCAACGA+TGG | 0.586283 | 8_2:-14623401 | Msa1236160:CDS |
| GACGTTCTTCGAGATGGCGG+CGG | 0.586732 | 8_2:-14626946 | Msa1236160:CDS |
| TCAGTACCAGCATGTAACAA+TGG | 0.587924 | 8_2:+14626320 | None:intergenic |
| AAAGATTCTTATTATTACCG+TGG | 0.598109 | 8_2:+14623157 | None:intergenic |
| GGGCAGATCGTTCTGTCTGA+CGG | 0.602588 | 8_2:+14623958 | None:intergenic |
| TAGGTATAGCAGGTCCAGCT+CGG | 0.606139 | 8_2:+14623330 | None:intergenic |
| ATCCTATATAGATGATGGAA+TGG | 0.607504 | 8_2:-14624332 | Msa1236160:intron |
| AGGTGGGCGGACAAGGAAGT+CGG | 0.608007 | 8_2:-14626971 | Msa1236160:CDS |
| GAACACTGCTGCAATCAAGC+CGG | 0.608819 | 8_2:+14625006 | None:intergenic |
| TGTGATGCGTGTTGCAACGG+AGG | 0.612083 | 8_2:+14626376 | None:intergenic |
| TGAACAGGTTGCCAAAGAAG+GGG | 0.612370 | 8_2:-14623989 | Msa1236160:intron |
| GCCGACGTTCTTCGAGATGG+CGG | 0.616688 | 8_2:-14626949 | Msa1236160:CDS |
| CTATATAGATGATGGAATGG+TGG | 0.619136 | 8_2:-14624329 | Msa1236160:intron |
| GTTGAGTAATGAGATATTAG+CGG | 0.621016 | 8_2:+14626725 | None:intergenic |
| TTCAGAGAAAGAAGCATCAG+TGG | 0.623361 | 8_2:+14626773 | None:intergenic |
| AGGATTCAGGCCACTCTTTG+GGG | 0.627304 | 8_2:-14626455 | Msa1236160:CDS |
| AGCGCCGCACGGAGACTCTG+TGG | 0.632423 | 8_2:+14626912 | None:intergenic |
| ACAATAAAGAAAGAGAAGCA+AGG | 0.638842 | 8_2:-14626475 | Msa1236160:CDS |
| TTGAGTATGTCAGCGCCGCA+CGG | 0.649413 | 8_2:+14626901 | None:intergenic |
| CCGAGCATTGAAGGTTGGCG+TGG | 0.649824 | 8_2:+14626400 | None:intergenic |
| GAGATGTTGTTTCAGGTGGG+CGG | 0.655381 | 8_2:-14626984 | Msa1236160:CDS |
| CCTTTATCCATTGAGGACCA+CGG | 0.659737 | 8_2:+14625416 | None:intergenic |
| GCCGCCATCTCGAAGAACGT+CGG | 0.661635 | 8_2:+14626948 | None:intergenic |
| TATTAGCGGGTCTTCTACGG+AGG | 0.662840 | 8_2:+14626739 | None:intergenic |
| ACGCGCTTCTGCAAGCACAG+GGG | 0.679364 | 8_2:+14623937 | None:intergenic |
| TATGTGTAAAGGATTCTCGA+TGG | 0.684433 | 8_2:-14623292 | Msa1236160:three_prime_UTR |
| CGTGAACGTGAGAGACTCCG+TGG | 0.737765 | 8_2:-14625433 | Msa1236160:CDS |
| ATGGTGGTATCAGTCTGCTG+AGG | 0.754043 | 8_2:-14624313 | Msa1236160:CDS |
| GCTTCCACAGAGTCTCCGTG+CGG | 0.792283 | 8_2:-14626916 | Msa1236160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTACAATTAATATTTTAT+GGG | - | chr8_2:14626433-14626452 | Msa1236160:CDS | 10.0% |
| !! | AAGATAAATGTAAAGAAATA+AGG | + | chr8_2:14623824-14623843 | None:intergenic | 15.0% |
| !!! | AGAAATTTTTGTATAATTCT+TGG | + | chr8_2:14625190-14625209 | None:intergenic | 15.0% |
| !!! | ACTTTTAATATTATGGATAA+GGG | + | chr8_2:14625687-14625706 | None:intergenic | 15.0% |
| !!! | AACTTTTAATATTATGGATA+AGG | + | chr8_2:14625688-14625707 | None:intergenic | 15.0% |
| !!! | CTGTTACAATTAATATTTTA+TGG | - | chr8_2:14626432-14626451 | Msa1236160:CDS | 15.0% |
| !! | ATAGTAAACTAAGAATTAAA+CGG | + | chr8_2:14626657-14626676 | None:intergenic | 15.0% |
| !! | TCTAATAATTTATGAAGGAA+AGG | + | chr8_2:14623251-14623270 | None:intergenic | 20.0% |
| !! | CGTAATCTAATAATTTATGA+AGG | + | chr8_2:14623256-14623275 | None:intergenic | 20.0% |
| !! | TAAGCACTTATAAGTAAAAT+TGG | + | chr8_2:14623526-14623545 | None:intergenic | 20.0% |
| !! | AAATGAATCATATGATTCTA+CGG | - | chr8_2:14623677-14623696 | Msa1236160:intron | 20.0% |
| !!! | ATGTTTTCCTTTCAAAATTT+TGG | - | chr8_2:14624033-14624052 | Msa1236160:intron | 20.0% |
| !!! | ATTTGAAATGATAACAACAA+TGG | + | chr8_2:14624165-14624184 | None:intergenic | 20.0% |
| !! | GTTGCTTCAATTATTTATTT+GGG | + | chr8_2:14624528-14624547 | None:intergenic | 20.0% |
| !! | AGTTGCTTCAATTATTTATT+TGG | + | chr8_2:14624529-14624548 | None:intergenic | 20.0% |
| !! | ATCAGTTATAAAACTCAAAA+TGG | + | chr8_2:14625254-14625273 | None:intergenic | 20.0% |
| !!! | CATAATTAAAAGCACATAAT+TGG | + | chr8_2:14625395-14625414 | None:intergenic | 20.0% |
| !! | TAAGATTATAAACTAATCCT+AGG | + | chr8_2:14625541-14625560 | None:intergenic | 20.0% |
| !! | AAACATTAATCCCTATTTAT+AGG | + | chr8_2:14625637-14625656 | None:intergenic | 20.0% |
| !!! | ACACAATTTTTTGAATTACT+TGG | + | chr8_2:14626060-14626079 | None:intergenic | 20.0% |
| !! | AGTAATTCAAAAAATTGTGT+CGG | - | chr8_2:14626060-14626079 | Msa1236160:intron | 20.0% |
| !! | AACTTGTAAAATAGAAAAAG+TGG | + | chr8_2:14626386-14626405 | None:intergenic | 20.0% |
| !! | TAGTAAACTAAGAATTAAAC+GGG | + | chr8_2:14626656-14626675 | None:intergenic | 20.0% |
| !!! | AAGTTCTAACAATAAGATTA+TGG | - | chr8_2:14626923-14626942 | Msa1236160:CDS | 20.0% |
| !! | TGGTTTGAAATAAGCTAAAA+GGG | + | chr8_2:14623506-14623525 | None:intergenic | 25.0% |
| !! | TTGGTTTGAAATAAGCTAAA+AGG | + | chr8_2:14623507-14623526 | None:intergenic | 25.0% |
| !!! | TCCAACATGATGATTTTTTA+AGG | - | chr8_2:14623566-14623585 | Msa1236160:intron | 25.0% |
| ! | ACCTTAAAAAATCATCATGT+TGG | + | chr8_2:14623570-14623589 | None:intergenic | 25.0% |
| ! | AAAAGATTTCAGAACATTGT+AGG | - | chr8_2:14623750-14623769 | Msa1236160:intron | 25.0% |
| ! | TTATCTTGGTATCAAAATGA+AGG | + | chr8_2:14623847-14623866 | None:intergenic | 25.0% |
| !! | CAAAGAACCAAAATTTTGAA+AGG | + | chr8_2:14624043-14624062 | None:intergenic | 25.0% |
| ! | TTATTTAGCTACAATTTGAC+TGG | + | chr8_2:14624129-14624148 | None:intergenic | 25.0% |
| ! | AATGAAAGATATACTCATCA+AGG | + | chr8_2:14624731-14624750 | None:intergenic | 25.0% |
| !! | ACTAGTTTCTTCTTAATTCA+GGG | + | chr8_2:14624760-14624779 | None:intergenic | 25.0% |
| !! | AACTAGTTTCTTCTTAATTC+AGG | + | chr8_2:14624761-14624780 | None:intergenic | 25.0% |
| ! | TGCAAATGCTAATTTACAAA+AGG | + | chr8_2:14624956-14624975 | None:intergenic | 25.0% |
| !!! | TGTTCTTCTTTAAAGTAAGA+TGG | - | chr8_2:14625115-14625134 | Msa1236160:intron | 25.0% |
| ! | ATATTGCGAGTATTCAATAA+AGG | + | chr8_2:14625166-14625185 | None:intergenic | 25.0% |
| ! | AACAATAATTGATACCAAAC+TGG | + | chr8_2:14625283-14625302 | None:intergenic | 25.0% |
| ! | GATTTATTTACACTTTACCT+AGG | - | chr8_2:14625418-14625437 | Msa1236160:CDS | 25.0% |
| ! | TAATCTGTAATTATTCTCCT+AGG | + | chr8_2:14625438-14625457 | None:intergenic | 25.0% |
| ! | ATAATCTTAGAGAATCTCTT+AGG | - | chr8_2:14625552-14625571 | Msa1236160:intron | 25.0% |
| ! | TCTATGTATGCCTATAAATA+GGG | - | chr8_2:14625624-14625643 | Msa1236160:intron | 25.0% |
| !! | GTTGTTGGATTTTAGATAAA+AGG | + | chr8_2:14625732-14625751 | None:intergenic | 25.0% |
| ! | AAAATTTGTCTCTTTACCTT+TGG | + | chr8_2:14625866-14625885 | None:intergenic | 25.0% |
| !!! | TATATTCAAGTTTGTTACTC+AGG | - | chr8_2:14626237-14626256 | Msa1236160:intron | 25.0% |
| ! | TTAACAATCAAGGCAAATAT+GGG | + | chr8_2:14626341-14626360 | None:intergenic | 25.0% |
| ! | TTTAACAATCAAGGCAAATA+TGG | + | chr8_2:14626342-14626361 | None:intergenic | 25.0% |
| ! | TAACTTCAGTTTAACAATCA+AGG | + | chr8_2:14626351-14626370 | None:intergenic | 25.0% |
| ! | GATTGTTAAACTGAAGTTAT+TGG | - | chr8_2:14626352-14626371 | Msa1236160:CDS | 25.0% |
| ! | TTCATTATACTTGAACAATG+TGG | - | chr8_2:14626531-14626550 | Msa1236160:intron | 25.0% |
| ! | TCATTATACTTGAACAATGT+GGG | - | chr8_2:14626532-14626551 | Msa1236160:intron | 25.0% |
| ! | AAGGTTTATCTGTAAAAGAT+TGG | - | chr8_2:14626574-14626593 | Msa1236160:intron | 25.0% |
| ! | ATTGGATAAAGAGTTTCAAA+GGG | - | chr8_2:14626592-14626611 | Msa1236160:intron | 25.0% |
| !!! | GCTTATTTTAGTGTTAAGAA+AGG | - | chr8_2:14626851-14626870 | Msa1236160:CDS | 25.0% |
| ! | AAAGATTCTTATTATTACCG+TGG | + | chr8_2:14626949-14626968 | None:intergenic | 25.0% |
| TTGAGTAATGAGATATTAGC+GGG | + | chr8_2:14623380-14623399 | None:intergenic | 30.0% | |
| GTTGAGTAATGAGATATTAG+CGG | + | chr8_2:14623381-14623400 | None:intergenic | 30.0% | |
| GAAATAAGCTAAAAGGGTTA+GGG | + | chr8_2:14623500-14623519 | None:intergenic | 30.0% | |
| TGAAATAAGCTAAAAGGGTT+AGG | + | chr8_2:14623501-14623520 | None:intergenic | 30.0% | |
| ACAATAAAGAAAGAGAAGCA+AGG | - | chr8_2:14623628-14623647 | Msa1236160:intron | 30.0% | |
| TGGATGATTGACATTTATCT+TGG | + | chr8_2:14623861-14623880 | None:intergenic | 30.0% | |
| ATACCAGATGTTATACCTAT+TGG | - | chr8_2:14623910-14623929 | Msa1236160:CDS | 30.0% | |
| AGTAAATGTTTACCAGTTCT+TGG | + | chr8_2:14624000-14624019 | None:intergenic | 30.0% | |
| TTGGTATATTTCTCAGATTG+TGG | - | chr8_2:14624253-14624272 | Msa1236160:intron | 30.0% | |
| TGGTATATTTCTCAGATTGT+GGG | - | chr8_2:14624254-14624273 | Msa1236160:intron | 30.0% | |
| AAGGATTGGGAACTAAATTA+GGG | + | chr8_2:14624352-14624371 | None:intergenic | 30.0% | |
| !! | ATGGCATTTGAAGCAAATTT+TGG | + | chr8_2:14624384-14624403 | None:intergenic | 30.0% |
| TTTCTTCTTAATTCAGGGAA+AGG | + | chr8_2:14624755-14624774 | None:intergenic | 30.0% | |
| ! | AAGATAAGTTCTAGTAATGC+AGG | + | chr8_2:14624878-14624897 | None:intergenic | 30.0% |
| CATAAAAGGTTTGAATCACA+CGG | + | chr8_2:14624901-14624920 | None:intergenic | 30.0% | |
| ! | GTGATTCAAACCTTTTATGT+CGG | - | chr8_2:14624902-14624921 | Msa1236160:intron | 30.0% |
| ! | TGATTCAAACCTTTTATGTC+GGG | - | chr8_2:14624903-14624922 | Msa1236160:intron | 30.0% |
| ! | ATTAAAAGCACATAATTGGC+AGG | + | chr8_2:14625391-14625410 | None:intergenic | 30.0% |
| AGTATCTTCTGTAATTTCCT+AGG | - | chr8_2:14625521-14625540 | Msa1236160:intron | 30.0% | |
| GTCTATGTATGCCTATAAAT+AGG | - | chr8_2:14625623-14625642 | Msa1236160:intron | 30.0% | |
| ! | AGGGATTAATGTTTAGTCTT+TGG | - | chr8_2:14625643-14625662 | Msa1236160:intron | 30.0% |
| ! | GTTGGATTTTAGATAAAAGG+AGG | + | chr8_2:14625729-14625748 | None:intergenic | 30.0% |
| ACGATAATTGTTGAAGTTGT+TGG | + | chr8_2:14625747-14625766 | None:intergenic | 30.0% | |
| TTGTGATCCTATATAGATGA+TGG | - | chr8_2:14625766-14625785 | Msa1236160:intron | 30.0% | |
| !! | ATCCTATATAGATGATGGAA+TGG | - | chr8_2:14625771-14625790 | Msa1236160:intron | 30.0% |
| ATTACACATACAGATCTGTT+AGG | + | chr8_2:14626093-14626112 | None:intergenic | 30.0% | |
| TCTGTATGTGTAATTTGAAC+AGG | - | chr8_2:14626099-14626118 | Msa1236160:intron | 30.0% | |
| ACCTTAACTGTGATGTTAAA+AGG | - | chr8_2:14626274-14626293 | Msa1236160:intron | 30.0% | |
| ! | TCCTTTTAACATCACAGTTA+AGG | + | chr8_2:14626278-14626297 | None:intergenic | 30.0% |
| GATTGGATAAAGAGTTTCAA+AGG | - | chr8_2:14626591-14626610 | Msa1236160:intron | 30.0% | |
| AAGAATTAAACGGGAAAAAG+CGG | + | chr8_2:14626647-14626666 | None:intergenic | 30.0% | |
| CATATACTCATGACAACTAT+AGG | + | chr8_2:14626795-14626814 | None:intergenic | 30.0% | |
| TGTCATGAGTATATGTGTAA+AGG | - | chr8_2:14626800-14626819 | Msa1236160:CDS | 30.0% | |
| !! | ATTTTAGTGTTAAGAAAGGC+AGG | - | chr8_2:14626855-14626874 | Msa1236160:CDS | 30.0% |
| TAACAATAAGATTATGGCCA+CGG | - | chr8_2:14626929-14626948 | Msa1236160:CDS | 30.0% | |
| TCTTTCTCTGAATCCCTTTA+CGG | - | chr8_2:14623341-14623360 | Msa1236160:exon | 35.0% | |
| ! | AGAGAAGAGAAAGAAGCTTT+TGG | + | chr8_2:14623463-14623482 | None:intergenic | 35.0% |
| ! | GCTTCTTTCTCTTCTCTTTT+TGG | - | chr8_2:14623466-14623485 | Msa1236160:intron | 35.0% |
| ATAACATCTGGTATGCGAAT+TGG | + | chr8_2:14623904-14623923 | None:intergenic | 35.0% | |
| CATCCAATAGGTATAACATC+TGG | + | chr8_2:14623916-14623935 | None:intergenic | 35.0% | |
| TTATACCTATTGGATGCTAC+TGG | - | chr8_2:14623920-14623939 | Msa1236160:CDS | 35.0% | |
| TATACCTATTGGATGCTACT+GGG | - | chr8_2:14623921-14623940 | Msa1236160:CDS | 35.0% | |
| CAATTTGACTGGAAGTCTAA+AGG | + | chr8_2:14624118-14624137 | None:intergenic | 35.0% | |
| ATTCACTCACATTCACCAAT+AGG | + | chr8_2:14624225-14624244 | None:intergenic | 35.0% | |
| TGTGAGTGAATCTGTTGTAT+TGG | - | chr8_2:14624234-14624253 | Msa1236160:intron | 35.0% | |
| GTGTTAAAGCAGTTAATGAG+TGG | - | chr8_2:14624278-14624297 | Msa1236160:CDS | 35.0% | |
| GAAGGATTGGGAACTAAATT+AGG | + | chr8_2:14624353-14624372 | None:intergenic | 35.0% | |
| !! | CAAATTTTGGTACTCTTGGA+AGG | + | chr8_2:14624371-14624390 | None:intergenic | 35.0% |
| !! | GAAGCAAATTTTGGTACTCT+TGG | + | chr8_2:14624375-14624394 | None:intergenic | 35.0% |
| TCCTTTCATGTCAAGATAGA+TGG | - | chr8_2:14624615-14624634 | Msa1236160:intron | 35.0% | |
| TCCATCTATCTTGACATGAA+AGG | + | chr8_2:14624619-14624638 | None:intergenic | 35.0% | |
| ATGCAAACCTTTATCCATTG+AGG | + | chr8_2:14624697-14624716 | None:intergenic | 35.0% | |
| TCGGGCTATATAGGTTAAAA+TGG | - | chr8_2:14624921-14624940 | Msa1236160:intron | 35.0% | |
| TACGATCACAAGTGATTCAT+GGG | + | chr8_2:14625002-14625021 | None:intergenic | 35.0% | |
| ATACGATCACAAGTGATTCA+TGG | + | chr8_2:14625003-14625022 | None:intergenic | 35.0% | |
| TAACTGATCAATGTCCAGTT+TGG | - | chr8_2:14625266-14625285 | Msa1236160:intron | 35.0% | |
| TATTGTTGCCAATAGAGTTG+TGG | - | chr8_2:14625296-14625315 | Msa1236160:intron | 35.0% | |
| TTAGCAAACCACAACTCTAT+TGG | + | chr8_2:14625307-14625326 | None:intergenic | 35.0% | |
| TCAGATAAATCAAACCACCA+AGG | + | chr8_2:14625347-14625366 | None:intergenic | 35.0% | |
| CACCATTCCATCATCTATAT+AGG | + | chr8_2:14625776-14625795 | None:intergenic | 35.0% | |
| !! | CTATATAGATGATGGAATGG+TGG | - | chr8_2:14625774-14625793 | Msa1236160:intron | 35.0% |
| ATTTGTCTCTTTACCTTTGG+TGG | + | chr8_2:14625863-14625882 | None:intergenic | 35.0% | |
| TGATGCACTAAATCATAGAG+CGG | + | chr8_2:14626023-14626042 | None:intergenic | 35.0% | |
| TCCATCTGTAATGACAGTTT+CGG | - | chr8_2:14626192-14626211 | Msa1236160:CDS | 35.0% | |
| TAACAGTATGAACTTCCCAA+CGG | + | chr8_2:14626418-14626437 | None:intergenic | 35.0% | |
| ACGAACTAGATATGAGACAA+AGG | - | chr8_2:14626555-14626574 | Msa1236160:intron | 35.0% | |
| AGAATTAAACGGGAAAAAGC+GGG | + | chr8_2:14626646-14626665 | None:intergenic | 35.0% | |
| ATGACAACTATAGGTATAGC+AGG | + | chr8_2:14626786-14626805 | None:intergenic | 35.0% | |
| TATGTGTAAAGGATTCTCGA+TGG | - | chr8_2:14626811-14626830 | Msa1236160:CDS | 35.0% | |
| !! | TTCAGAGAAAGAAGCATCAG+TGG | + | chr8_2:14623333-14623352 | None:intergenic | 40.0% |
| ! | AGATATTAGCGGGTCTTCTA+CGG | + | chr8_2:14623370-14623389 | None:intergenic | 40.0% |
| TGCAGCTTCGATTTCAGATA+GGG | + | chr8_2:14623600-14623619 | None:intergenic | 40.0% | |
| ATGCAGCTTCGATTTCAGAT+AGG | + | chr8_2:14623601-14623620 | None:intergenic | 40.0% | |
| AGAAAGAGAAGCAAGGATTC+AGG | - | chr8_2:14623635-14623654 | Msa1236160:intron | 40.0% | |
| ! | ATTTTCATCTCCCCAAAGAG+TGG | + | chr8_2:14623661-14623680 | None:intergenic | 40.0% |
| ! | TTTTGTGATGCGTGTTGCAA+CGG | + | chr8_2:14623733-14623752 | None:intergenic | 40.0% |
| TGTTACCCATTGTTACATGC+TGG | - | chr8_2:14623777-14623796 | Msa1236160:intron | 40.0% | |
| CAGTACCAGCATGTAACAAT+GGG | + | chr8_2:14623785-14623804 | None:intergenic | 40.0% | |
| TCAGTACCAGCATGTAACAA+TGG | + | chr8_2:14623786-14623805 | None:intergenic | 40.0% | |
| ! | TTGTTACATGCTGGTACTGA+AGG | - | chr8_2:14623786-14623805 | Msa1236160:intron | 40.0% |
| CATCCACTTCATTTACATGC+AGG | - | chr8_2:14623875-14623894 | Msa1236160:CDS | 40.0% | |
| AAGCCTGCATGTAAATGAAG+TGG | + | chr8_2:14623881-14623900 | None:intergenic | 40.0% | |
| CCAGGGACTTATGATAGTTT+GGG | + | chr8_2:14624069-14624088 | None:intergenic | 40.0% | |
| ! | GCTGTTGTGTTATTGCCTAT+TGG | - | chr8_2:14624207-14624226 | Msa1236160:intron | 40.0% |
| TTAGGGACAACTGCAAACAT+AGG | + | chr8_2:14624335-14624354 | None:intergenic | 40.0% | |
| TTGGTACTCTTGGAAGGATT+GGG | + | chr8_2:14624365-14624384 | None:intergenic | 40.0% | |
| TTTGGTACTCTTGGAAGGAT+TGG | + | chr8_2:14624366-14624385 | None:intergenic | 40.0% | |
| !! | CCATGACAACTTGTTGAAGA+TGG | + | chr8_2:14624424-14624443 | None:intergenic | 40.0% |
| CCATCTTCAACAAGTTGTCA+TGG | - | chr8_2:14624421-14624440 | Msa1236160:intron | 40.0% | |
| ATGGAACTCATTCTCTTGTG+TGG | - | chr8_2:14624440-14624459 | Msa1236160:intron | 40.0% | |
| TTCTAGTAATGCAGGTGCAA+TGG | + | chr8_2:14624870-14624889 | None:intergenic | 40.0% | |
| CCTATATAGCCCGACATAAA+AGG | + | chr8_2:14624915-14624934 | None:intergenic | 40.0% | |
| ! | CCTTTTATGTCGGGCTATAT+AGG | - | chr8_2:14624912-14624931 | Msa1236160:intron | 40.0% |
| ACGATCACAAGTGATTCATG+GGG | + | chr8_2:14625001-14625020 | None:intergenic | 40.0% | |
| TTTCACAATGCAGACATTGC+AGG | - | chr8_2:14625029-14625048 | Msa1236160:CDS | 40.0% | |
| TTCACAATGCAGACATTGCA+GGG | - | chr8_2:14625030-14625049 | Msa1236160:CDS | 40.0% | |
| AGCCTTAAATTCCATTGCCT+TGG | - | chr8_2:14625327-14625346 | Msa1236160:intron | 40.0% | |
| CACCAAGGCAATGGAATTTA+AGG | + | chr8_2:14625332-14625351 | None:intergenic | 40.0% | |
| CTTAAATTCCATTGCCTTGG+TGG | - | chr8_2:14625330-14625349 | Msa1236160:intron | 40.0% | |
| AAATCAAACCACCAAGGCAA+TGG | + | chr8_2:14625341-14625360 | None:intergenic | 40.0% | |
| ! | CGCTACTCACTTCACTATTT+TGG | - | chr8_2:14625909-14625928 | Msa1236160:intron | 40.0% |
| TTTGAACAGGTTGCCAAAGA+AGG | - | chr8_2:14626112-14626131 | Msa1236160:intron | 40.0% | |
| TTGAACAGGTTGCCAAAGAA+GGG | - | chr8_2:14626113-14626132 | Msa1236160:intron | 40.0% | |
| CCATCTGTAATGACAGTTTC+GGG | - | chr8_2:14626193-14626212 | Msa1236160:CDS | 40.0% | |
| CTTATCTGATCAACTGTTGC+AGG | + | chr8_2:14626730-14626749 | None:intergenic | 40.0% | |
| CTGCAACAGTTGATCAGATA+AGG | - | chr8_2:14626728-14626747 | Msa1236160:CDS | 40.0% | |
| ! | GAGAAAGAAGCTTTTGGCGT+CGG | + | chr8_2:14623457-14623476 | None:intergenic | 45.0% |
| AAGGATTCAGGCCACTCTTT+GGG | - | chr8_2:14623647-14623666 | Msa1236160:intron | 45.0% | |
| AGTACCCAGTAGCATCCAAT+AGG | + | chr8_2:14623928-14623947 | None:intergenic | 45.0% | |
| CCCAAACTATCATAAGTCCC+TGG | - | chr8_2:14624066-14624085 | Msa1236160:intron | 45.0% | |
| GCCAGGGACTTATGATAGTT+TGG | + | chr8_2:14624070-14624089 | None:intergenic | 45.0% | |
| AACTATCATAAGTCCCTGGC+TGG | - | chr8_2:14624070-14624089 | Msa1236160:intron | 45.0% | |
| ACTATCATAAGTCCCTGGCT+GGG | - | chr8_2:14624071-14624090 | Msa1236160:intron | 45.0% | |
| ! | GGTCGTGGATTAAATGCTCA+TGG | + | chr8_2:14624403-14624422 | None:intergenic | 45.0% |
| !! | CAACTTGTTGAAGATGGTCG+TGG | + | chr8_2:14624418-14624437 | None:intergenic | 45.0% |
| CCTTTATCCATTGAGGACCA+CGG | + | chr8_2:14624690-14624709 | None:intergenic | 45.0% | |
| !! | TTTCCATTTTTCCTGCCCAC+TGG | - | chr8_2:14624804-14624823 | Msa1236160:intron | 45.0% |
| !! | TTCCATTTTTCCTGCCCACT+GGG | - | chr8_2:14624805-14624824 | Msa1236160:intron | 45.0% |
| GTACTTGACTATGCGCAAAC+CGG | - | chr8_2:14625078-14625097 | Msa1236160:intron | 45.0% | |
| TGTCTCTTTACCTTTGGTGG+TGG | + | chr8_2:14625860-14625879 | None:intergenic | 45.0% | |
| TGAGTAGCGATGAGAGATGT+GGG | + | chr8_2:14625898-14625917 | None:intergenic | 45.0% | |
| TGAACAGGTTGCCAAAGAAG+GGG | - | chr8_2:14626114-14626133 | Msa1236160:intron | 45.0% | |
| CCCGAAACTGTCATTACAGA+TGG | + | chr8_2:14626196-14626215 | None:intergenic | 45.0% | |
| ACAAGTTAGTGTAGAGCCGT+TGG | - | chr8_2:14626399-14626418 | Msa1236160:CDS | 45.0% | |
| CAAGTTAGTGTAGAGCCGTT+GGG | - | chr8_2:14626400-14626419 | Msa1236160:CDS | 45.0% | |
| TCATGATGTATAGTCCGAGC+TGG | - | chr8_2:14626759-14626778 | Msa1236160:CDS | 45.0% | |
| !!! | AATAATAACTTTTAATATTA+TGG | + | chr8_2:14625694-14625713 | None:intergenic | 5.0% |
| TCTTCTACGGAGGCCGTAAA+GGG | + | chr8_2:14623357-14623376 | None:intergenic | 50.0% | |
| ! | TATTAGCGGGTCTTCTACGG+AGG | + | chr8_2:14623367-14623386 | None:intergenic | 50.0% |
| CAAGGATTCAGGCCACTCTT+TGG | - | chr8_2:14623646-14623665 | Msa1236160:intron | 50.0% | |
| AGGATTCAGGCCACTCTTTG+GGG | - | chr8_2:14623648-14623667 | Msa1236160:intron | 50.0% | |
| ATTCATGTCTGCCGAGCTAC+TGG | - | chr8_2:14623974-14623993 | Msa1236160:CDS | 50.0% | |
| GGCAGTTGTGCTTGACAAAC+TGG | - | chr8_2:14624461-14624480 | Msa1236160:intron | 50.0% | |
| CCGTGGTCCTCAATGGATAA+AGG | - | chr8_2:14624687-14624706 | Msa1236160:intron | 50.0% | |
| !! | TCCATTTTTCCTGCCCACTG+GGG | - | chr8_2:14624806-14624825 | Msa1236160:intron | 50.0% |
| GGGAGAGGCTTACATCAACA+CGG | - | chr8_2:14624831-14624850 | Msa1236160:intron | 50.0% | |
| GAACACTGCTGCAATCAAGC+CGG | + | chr8_2:14625100-14625119 | None:intergenic | 50.0% | |
| ATGGTGGTATCAGTCTGCTG+AGG | - | chr8_2:14625790-14625809 | Msa1236160:intron | 50.0% | |
| !! | TTTACCTTTGGTGGTGGAGG+AGG | + | chr8_2:14625854-14625873 | None:intergenic | 50.0% |
| !! | CTCTTTACCTTTGGTGGTGG+AGG | + | chr8_2:14625857-14625876 | None:intergenic | 50.0% |
| GAGTAGCGATGAGAGATGTG+GGG | + | chr8_2:14625897-14625916 | None:intergenic | 50.0% | |
| GTGAGTAGCGATGAGAGATG+TGG | + | chr8_2:14625899-14625918 | None:intergenic | 50.0% | |
| CGGTAACTGTACCCCTTCTT+TGG | + | chr8_2:14626128-14626147 | None:intergenic | 50.0% | |
| TAAACGGGAAAAAGCGGGAG+TGG | + | chr8_2:14626641-14626660 | None:intergenic | 50.0% | |
| TAGGTATAGCAGGTCCAGCT+CGG | + | chr8_2:14626776-14626795 | None:intergenic | 50.0% | |
| ! | TTGTTTCAGGTGGGCGGACA+AGG | - | chr8_2:14623125-14623144 | Msa1236160:three_prime_UTR | 55.0% |
| TTGAGTATGTCAGCGCCGCA+CGG | + | chr8_2:14623205-14623224 | None:intergenic | 55.0% | |
| !! | GCGGCGCTGACATACTCAAT+CGG | - | chr8_2:14623206-14623225 | Msa1236160:three_prime_UTR | 55.0% |
| GTCTTCTACGGAGGCCGTAA+AGG | + | chr8_2:14623358-14623377 | None:intergenic | 55.0% | |
| CCACGCCAACCTTCAATGCT+CGG | - | chr8_2:14623703-14623722 | Msa1236160:intron | 55.0% | |
| CACGCCAACCTTCAATGCTC+GGG | - | chr8_2:14623704-14623723 | Msa1236160:intron | 55.0% | |
| TGTGATGCGTGTTGCAACGG+AGG | + | chr8_2:14623730-14623749 | None:intergenic | 55.0% | |
| CCAGTTCTTGGCCAGTAGCT+CGG | + | chr8_2:14623988-14624007 | None:intergenic | 55.0% | |
| TGCCAATACATGCCCAGCCA+GGG | + | chr8_2:14624086-14624105 | None:intergenic | 55.0% | |
| TTGCCAATACATGCCCAGCC+AGG | + | chr8_2:14624087-14624106 | None:intergenic | 55.0% | |
| CACGGAGTCTCTCACGTTCA+CGG | + | chr8_2:14624672-14624691 | None:intergenic | 55.0% | |
| AGAGACTCCGTGGTCCTCAA+TGG | - | chr8_2:14624680-14624699 | Msa1236160:intron | 55.0% | |
| GGGGGAGGAGGATATACAGT+TGG | + | chr8_2:14625830-14625849 | None:intergenic | 55.0% | |
| GGGCAGATCGTTCTGTCTGA+CGG | + | chr8_2:14626148-14626167 | None:intergenic | 55.0% | |
| TACGCGCTTCTGCAAGCACA+GGG | + | chr8_2:14626170-14626189 | None:intergenic | 55.0% | |
| TTACGCGCTTCTGCAAGCAC+AGG | + | chr8_2:14626171-14626190 | None:intergenic | 55.0% | |
| TTGCAGGCACCATCGTTGCT+GGG | + | chr8_2:14626714-14626733 | None:intergenic | 55.0% | |
| AGGTGGGCGGACAAGGAAGT+CGG | - | chr8_2:14623132-14623151 | Msa1236160:three_prime_UTR | 60.0% | |
| TCGGCCGACGTTCTTCGAGA+TGG | - | chr8_2:14623151-14623170 | Msa1236160:three_prime_UTR | 60.0% | |
| GCCGACGTTCTTCGAGATGG+CGG | - | chr8_2:14623154-14623173 | Msa1236160:three_prime_UTR | 60.0% | |
| GCCGCCATCTCGAAGAACGT+CGG | + | chr8_2:14623158-14623177 | None:intergenic | 60.0% | |
| ! | GACGTTCTTCGAGATGGCGG+CGG | - | chr8_2:14623157-14623176 | Msa1236160:three_prime_UTR | 60.0% |
| GCTTCCACAGAGTCTCCGTG+CGG | - | chr8_2:14623187-14623206 | Msa1236160:three_prime_UTR | 60.0% | |
| !! | CCGAGCATTGAAGGTTGGCG+TGG | + | chr8_2:14623706-14623725 | None:intergenic | 60.0% |
| !! | GAGGCCCGAGCATTGAAGGT+TGG | + | chr8_2:14623711-14623730 | None:intergenic | 60.0% |
| !! | AACGGAGGCCCGAGCATTGA+AGG | + | chr8_2:14623715-14623734 | None:intergenic | 60.0% |
| TCACTAGCGCTGCACGCACT+TGG | - | chr8_2:14623950-14623969 | Msa1236160:CDS | 60.0% | |
| CACTAGCGCTGCACGCACTT+GGG | - | chr8_2:14623951-14623970 | Msa1236160:CDS | 60.0% | |
| CCGAGCTACTGGCCAAGAAC+TGG | - | chr8_2:14623985-14624004 | Msa1236160:CDS | 60.0% | |
| GTCCCTGGCTGGGCATGTAT+TGG | - | chr8_2:14624081-14624100 | Msa1236160:intron | 60.0% | |
| CGTGAACGTGAGAGACTCCG+TGG | - | chr8_2:14624670-14624689 | Msa1236160:intron | 60.0% | |
| GCCCCAGTGGGCAGGAAAAA+TGG | + | chr8_2:14624810-14624829 | None:intergenic | 60.0% | |
| ! | TTTTTCCTGCCCACTGGGGC+AGG | - | chr8_2:14624810-14624829 | Msa1236160:intron | 60.0% |
| ! | TTTTCCTGCCCACTGGGGCA+GGG | - | chr8_2:14624811-14624830 | Msa1236160:intron | 60.0% |
| !! | TTTGGTGGTGGAGGAGGAGG+GGG | + | chr8_2:14625848-14625867 | None:intergenic | 60.0% |
| !! | CTTTGGTGGTGGAGGAGGAG+GGG | + | chr8_2:14625849-14625868 | None:intergenic | 60.0% |
| !! | CCTTTGGTGGTGGAGGAGGA+GGG | + | chr8_2:14625850-14625869 | None:intergenic | 60.0% |
| !! | ACCTTTGGTGGTGGAGGAGG+AGG | + | chr8_2:14625851-14625870 | None:intergenic | 60.0% |
| ACGCGCTTCTGCAAGCACAG+GGG | + | chr8_2:14626169-14626188 | None:intergenic | 60.0% | |
| GGGAAAAAGCGGGAGTGGAG+GGG | + | chr8_2:14626636-14626655 | None:intergenic | 60.0% | |
| CGGGAAAAAGCGGGAGTGGA+GGG | + | chr8_2:14626637-14626656 | None:intergenic | 60.0% | |
| ACGGGAAAAAGCGGGAGTGG+AGG | + | chr8_2:14626638-14626657 | None:intergenic | 60.0% | |
| ! | TAAGCGCTGCCCAGCAACGA+TGG | - | chr8_2:14626702-14626721 | Msa1236160:CDS | 60.0% |
| GTTGCAGGCACCATCGTTGC+TGG | + | chr8_2:14626715-14626734 | None:intergenic | 60.0% | |
| AAGCCTCTCCCTGCCCCAGT+GGG | + | chr8_2:14624822-14624841 | None:intergenic | 65.0% | |
| TAAGCCTCTCCCTGCCCCAG+TGG | + | chr8_2:14624823-14624842 | None:intergenic | 65.0% | |
| CCCTCCTCCTCCACCACCAA+AGG | - | chr8_2:14625847-14625866 | Msa1236160:intron | 65.0% | |
| CGCGCTTCTGCAAGCACAGG+GGG | + | chr8_2:14626168-14626187 | None:intergenic | 65.0% | |
| AGCGCCGCACGGAGACTCTG+TGG | + | chr8_2:14623194-14623213 | None:intergenic | 70.0% | |
| CTCTCCCTGCCCCAGTGGGC+AGG | + | chr8_2:14624818-14624837 | None:intergenic | 75.0% | |
| CTGCCCACTGGGGCAGGGAG+AGG | - | chr8_2:14624816-14624835 | Msa1236160:intron | 75.0% | |
| GGTGGAGGAGGAGGGGGAGG+AGG | + | chr8_2:14625842-14625861 | None:intergenic | 75.0% | |
| !! | GGTGGTGGAGGAGGAGGGGG+AGG | + | chr8_2:14625845-14625864 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 14623122 | 14627003 | 14623122 | ID=Msa1236160;Name=Msa1236160 |
| chr8_2 | mRNA | 14623122 | 14627003 | 14623122 | ID=Msa1236160-mRNA-1;Parent=Msa1236160;Name=Msa1236160-mRNA-1;_AED=0.10;_eAED=0.12;_QI=0|1|0.87|1|1|1|8|232|384 |
| chr8_2 | exon | 14623122 | 14623425 | 14623122 | ID=Msa1236160-mRNA-1:exon:5690;Parent=Msa1236160-mRNA-1 |
| chr8_2 | exon | 14623867 | 14624004 | 14623867 | ID=Msa1236160-mRNA-1:exon:5689;Parent=Msa1236160-mRNA-1 |
| chr8_2 | exon | 14624257 | 14624343 | 14624257 | ID=Msa1236160-mRNA-1:exon:5688;Parent=Msa1236160-mRNA-1 |
| chr8_2 | exon | 14624997 | 14625083 | 14624997 | ID=Msa1236160-mRNA-1:exon:5687;Parent=Msa1236160-mRNA-1 |
| chr8_2 | exon | 14625417 | 14625491 | 14625417 | ID=Msa1236160-mRNA-1:exon:5686;Parent=Msa1236160-mRNA-1 |
| chr8_2 | exon | 14626119 | 14626228 | 14626119 | ID=Msa1236160-mRNA-1:exon:5685;Parent=Msa1236160-mRNA-1 |
| chr8_2 | exon | 14626318 | 14626537 | 14626318 | ID=Msa1236160-mRNA-1:exon:5684;Parent=Msa1236160-mRNA-1 |
| chr8_2 | exon | 14626638 | 14627003 | 14626638 | ID=Msa1236160-mRNA-1:exon:5683;Parent=Msa1236160-mRNA-1 |
| chr8_2 | CDS | 14626638 | 14627003 | 14626638 | ID=Msa1236160-mRNA-1:cds;Parent=Msa1236160-mRNA-1 |
| chr8_2 | CDS | 14626318 | 14626537 | 14626318 | ID=Msa1236160-mRNA-1:cds;Parent=Msa1236160-mRNA-1 |
| chr8_2 | CDS | 14626119 | 14626228 | 14626119 | ID=Msa1236160-mRNA-1:cds;Parent=Msa1236160-mRNA-1 |
| chr8_2 | CDS | 14625417 | 14625491 | 14625417 | ID=Msa1236160-mRNA-1:cds;Parent=Msa1236160-mRNA-1 |
| chr8_2 | CDS | 14624997 | 14625083 | 14624997 | ID=Msa1236160-mRNA-1:cds;Parent=Msa1236160-mRNA-1 |
| chr8_2 | CDS | 14624257 | 14624343 | 14624257 | ID=Msa1236160-mRNA-1:cds;Parent=Msa1236160-mRNA-1 |
| chr8_2 | CDS | 14623867 | 14624004 | 14623867 | ID=Msa1236160-mRNA-1:cds;Parent=Msa1236160-mRNA-1 |
| chr8_2 | CDS | 14623354 | 14623425 | 14623354 | ID=Msa1236160-mRNA-1:cds;Parent=Msa1236160-mRNA-1 |
| chr8_2 | three_prime_UTR | 14623122 | 14623353 | 14623122 | ID=Msa1236160-mRNA-1:three_prime_utr;Parent=Msa1236160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
