AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0281050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0281050 MtrunA17_Chr2g0295141 94.268 157 9 0 1 157 1 157 3.36e-105 297
Msa0281050 MtrunA17_Chr2g0295091 92.994 157 11 0 1 157 1 157 9.04e-104 293
Msa0281050 MtrunA17_Chr2g0295104 91.720 157 13 0 1 157 1 157 8.12e-103 291
Msa0281050 MtrunA17_Chr2g0295124 90.446 157 15 0 1 157 1 157 1.13e-100 286
Msa0281050 MtrunA17_Chr6g0462311 65.605 157 54 0 1 157 1 157 2.63e-69 206
Msa0281050 MtrunA17_Chr4g0067951 65.605 157 54 0 1 157 1 157 9.56e-69 205
Msa0281050 MtrunA17_Chr2g0295021 63.694 157 57 0 1 157 1 157 1.42e-66 199
Msa0281050 MtrunA17_Chr2g0295001 63.694 157 57 0 1 157 1 157 1.42e-66 199
Msa0281050 MtrunA17_Chr2g0295051 61.146 157 61 0 1 157 1 157 1.88e-64 194
Msa0281050 MtrunA17_Chr2g0295064 61.783 157 60 0 1 157 68 224 1.09e-63 194
Msa0281050 MtrunA17_Chr6g0462291 64.286 140 50 0 1 140 1 140 5.92e-59 181
Msa0281050 MtrunA17_Chr2g0295041 56.051 157 69 0 1 157 1 157 1.89e-58 179
Msa0281050 MtrunA17_Chr2g0295081 45.860 157 85 0 1 157 1 157 2.89e-46 148
Msa0281050 MtrunA17_Chr4g0067921 42.857 161 85 5 1 157 1 158 4.85e-33 114
Msa0281050 MtrunA17_Chr2g0295211 32.692 156 104 1 1 155 1 156 1.80e-31 110
Msa0281050 MtrunA17_Chr4g0067841 34.395 157 102 1 1 156 1 157 2.96e-31 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 54 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGTATACTTGGTTTAATTT+TGG 0.204951 2_3:+16228880 Msa0281050:three_prime_UTR
AGACATGGATAACTTCTTAA+TGG 0.262600 2_3:-16228026 None:intergenic
AAATCTAAGTGATGATGTTT+AGG 0.300222 2_3:+16229041 Msa0281050:three_prime_UTR
AATAATTGAAGTTTAAGATA+TGG 0.309766 2_3:+16228923 Msa0281050:three_prime_UTR
TGGGCAGCTGGAATCACCTT+TGG 0.317415 2_3:-16227965 None:intergenic
GGGCAGCTGGAATCACCTTT+GGG 0.327572 2_3:-16227964 None:intergenic
GATAACTTCTTAATGGTTCC+TGG 0.335652 2_3:-16228019 None:intergenic
TACAGCTTGGTAGGAGGAAC+AGG 0.341343 2_3:+16228648 Msa0281050:CDS
TTCAACAATTTCAACACTTT+GGG 0.350751 2_3:-16227984 None:intergenic
CTTCAACAATTTCAACACTT+TGG 0.364915 2_3:-16227985 None:intergenic
GAAACTAAGGCCAGAGGAAC+TGG 0.366866 2_3:+16228804 Msa0281050:CDS
AGAGCTTTGTAGAGTTTAGC+TGG 0.394931 2_3:-16227917 None:intergenic
TGCAGTAGATGAGGCAAACT+TGG 0.396721 2_3:+16228617 Msa0281050:CDS
GTTGAAATTGTTGAAGGAAA+TGG 0.402462 2_3:+16227992 Msa0281050:CDS
ATTTCAACACTTTGGGCAGC+TGG 0.408726 2_3:-16227977 None:intergenic
TTATCTTGATATATATATCA+TGG 0.417043 2_3:+16227853 Msa0281050:exon
CTTGATAAGTCCAGTTCCTC+TGG 0.419380 2_3:-16228814 None:intergenic
AGATAGAGCTGCATCACCTT+TGG 0.442558 2_3:-16228766 None:intergenic
TTACTAAGTAAAAGTATACT+TGG 0.457767 2_3:+16228869 Msa0281050:exon
AAAATTGTGGCTGGCTCTGA+TGG 0.498760 2_3:+16228708 Msa0281050:CDS
TAATTTGTGTAGCACAAAGT+TGG 0.501990 2_3:-16228592 None:intergenic
CAAAGTGTTGAAATTGTTGA+AGG 0.502542 2_3:+16227986 Msa0281050:CDS
CAGAGGAACTGGACTTATCA+AGG 0.507213 2_3:+16228815 Msa0281050:CDS
TATCTTGATATATATATCAT+GGG 0.511953 2_3:+16227854 Msa0281050:exon
GGACTTATCAAGGCCATTGA+GGG 0.514208 2_3:+16228825 Msa0281050:CDS
GGATACAACTACAGCTTGGT+AGG 0.525235 2_3:+16228639 Msa0281050:CDS
CTCTGGCCTTAGTTTCATCA+CGG 0.532674 2_3:-16228797 None:intergenic
TGCAGTCCGTGATGAAACTA+AGG 0.533307 2_3:+16228791 Msa0281050:CDS
TGCCACGACGTAGCCCTCAA+TGG 0.549026 2_3:-16228838 None:intergenic
TTTGACTGTAATCTTAACAA+TGG 0.571145 2_3:-16228736 None:intergenic
TGGACTTATCAAGGCCATTG+AGG 0.572485 2_3:+16228824 Msa0281050:CDS
GTTGAAGGAAATGGAGGACC+AGG 0.585895 2_3:+16228001 Msa0281050:CDS
CAAATTAGATGCAGTAGATG+AGG 0.587202 2_3:+16228608 Msa0281050:CDS
ATTGTGGCTGGCTCTGATGG+TGG 0.588345 2_3:+16228711 Msa0281050:CDS
TACAACTAGTATATAACTTG+TGG 0.592128 2_3:-16227781 None:intergenic
ATTTATTGAAGAAATACAGA+TGG 0.594988 2_3:-16229071 None:intergenic
GCAGTAGATGAGGCAAACTT+GGG 0.598362 2_3:+16228618 Msa0281050:CDS
GTAGAGTTTAGCTGGAGCCA+CGG 0.602676 2_3:-16227909 None:intergenic
CTTGGTAGGAGGAACAGGGT+TGG 0.609437 2_3:+16228653 Msa0281050:CDS
ATATGCAAGAAGAAAATGAA+AGG 0.609467 2_3:-16227821 None:intergenic
GTTTGATGTTGAGATAGTGT+CGG 0.613499 2_3:+16228973 Msa0281050:three_prime_UTR
CTTGGGATACAACTACAGCT+TGG 0.614144 2_3:+16228635 Msa0281050:CDS
TGCTGATGAAATCATCCCAA+AGG 0.616025 2_3:+16227949 Msa0281050:CDS
AAGAAGTTATCCATGTCTGA+AGG 0.619942 2_3:+16228031 Msa0281050:CDS
GAAATTGTTGAAGGAAATGG+AGG 0.626795 2_3:+16227995 Msa0281050:CDS
CTAGTATATAACTTGTGGTG+CGG 0.627531 2_3:-16227776 None:intergenic
TACAACTACAGCTTGGTAGG+AGG 0.632731 2_3:+16228642 Msa0281050:CDS
GGCCATTGAGGGCTACGTCG+TGG 0.646344 2_3:+16228836 Msa0281050:CDS
TCTTAAATTACCTTCAGACA+TGG 0.649758 2_3:-16228041 None:intergenic
ACAGTCAAATACCACACCAA+AGG 0.652327 2_3:+16228750 Msa0281050:CDS
GAGCTGCATCACCTTTGGTG+TGG 0.654393 2_3:-16228761 None:intergenic
CGTGATGAAACTAAGGCCAG+AGG 0.688505 2_3:+16228798 Msa0281050:CDS
ACAGCTTGGTAGGAGGAACA+GGG 0.710550 2_3:+16228649 Msa0281050:CDS
TGATGAACATGTATCAACCG+TGG 0.718349 2_3:+16227892 Msa0281050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATATAAATAAATTATAA+TGG + chr2_3:16228549-16228568 Msa0281050:intron 0.0%
!! ATTATATAAATAAATTATAA+TGG + chr2_3:16228549-16228568 Msa0281050:intron 0.0%
!!! AAATAAAAGTATAACATAAA+TGG - chr2_3:16228353-16228372 None:intergenic 10.0%
!!! AAATAAAAGTATAACATAAA+TGG - chr2_3:16228353-16228372 None:intergenic 10.0%
!! TTATCTTGATATATATATCA+TGG + chr2_3:16227853-16227872 Msa0281050:exon 15.0%
!! TATCTTGATATATATATCAT+GGG + chr2_3:16227854-16227873 Msa0281050:exon 15.0%
!!! TTTGTCAATTTTTAAGTAAA+AGG - chr2_3:16228187-16228206 None:intergenic 15.0%
!!! ATACTTTTACTTAGTAATTA+GGG - chr2_3:16228866-16228885 None:intergenic 15.0%
!!! TATACTTTTACTTAGTAATT+AGG - chr2_3:16228867-16228886 None:intergenic 15.0%
!!! AATAATTGAAGTTTAAGATA+TGG + chr2_3:16228923-16228942 Msa0281050:three_prime_UTR 15.0%
!! TTATCTTGATATATATATCA+TGG + chr2_3:16227853-16227872 Msa0281050:exon 15.0%
!! TATCTTGATATATATATCAT+GGG + chr2_3:16227854-16227873 Msa0281050:exon 15.0%
!!! TTTGTCAATTTTTAAGTAAA+AGG - chr2_3:16228187-16228206 None:intergenic 15.0%
!!! ATACTTTTACTTAGTAATTA+GGG - chr2_3:16228866-16228885 None:intergenic 15.0%
!!! TATACTTTTACTTAGTAATT+AGG - chr2_3:16228867-16228886 None:intergenic 15.0%
!!! AATAATTGAAGTTTAAGATA+TGG + chr2_3:16228923-16228942 Msa0281050:three_prime_UTR 15.0%
!!! GAATTTAACTTACTTTTCTT+TGG - chr2_3:16228277-16228296 None:intergenic 20.0%
!!! CACATGAATCATTTTTTTTA+AGG - chr2_3:16228449-16228468 None:intergenic 20.0%
!!! TTACTAAGTAAAAGTATACT+TGG + chr2_3:16228869-16228888 Msa0281050:exon 20.0%
!!! AAGTATACTTGGTTTAATTT+TGG + chr2_3:16228880-16228899 Msa0281050:three_prime_UTR 20.0%
!! ATTTATTGAAGAAATACAGA+TGG - chr2_3:16229074-16229093 None:intergenic 20.0%
!!! GAATTTAACTTACTTTTCTT+TGG - chr2_3:16228277-16228296 None:intergenic 20.0%
!!! CACATGAATCATTTTTTTTA+AGG - chr2_3:16228449-16228468 None:intergenic 20.0%
!!! TTACTAAGTAAAAGTATACT+TGG + chr2_3:16228869-16228888 Msa0281050:exon 20.0%
!!! AAGTATACTTGGTTTAATTT+TGG + chr2_3:16228880-16228899 Msa0281050:three_prime_UTR 20.0%
!! ATTTATTGAAGAAATACAGA+TGG - chr2_3:16229074-16229093 None:intergenic 20.0%
! TACAACTAGTATATAACTTG+TGG - chr2_3:16227784-16227803 None:intergenic 25.0%
! ATATGCAAGAAGAAAATGAA+AGG - chr2_3:16227824-16227843 None:intergenic 25.0%
! TTCAACAATTTCAACACTTT+GGG - chr2_3:16227987-16228006 None:intergenic 25.0%
! AATAGAATCTTGAGAAATGA+AGG + chr2_3:16228377-16228396 Msa0281050:intron 25.0%
! ATAATTATTAGACATACTCC+TGG - chr2_3:16228423-16228442 None:intergenic 25.0%
!! AGGAGTATGTCTAATAATTA+TGG + chr2_3:16228422-16228441 Msa0281050:intron 25.0%
! TGAATTCGAAACAAAAATTG+TGG + chr2_3:16228695-16228714 Msa0281050:CDS 25.0%
! TTTGACTGTAATCTTAACAA+TGG - chr2_3:16228739-16228758 None:intergenic 25.0%
!! AAATCTAAGTGATGATGTTT+AGG + chr2_3:16229041-16229060 Msa0281050:three_prime_UTR 25.0%
! TACAACTAGTATATAACTTG+TGG - chr2_3:16227784-16227803 None:intergenic 25.0%
! ATATGCAAGAAGAAAATGAA+AGG - chr2_3:16227824-16227843 None:intergenic 25.0%
! TTCAACAATTTCAACACTTT+GGG - chr2_3:16227987-16228006 None:intergenic 25.0%
! AATAGAATCTTGAGAAATGA+AGG + chr2_3:16228377-16228396 Msa0281050:intron 25.0%
! ATAATTATTAGACATACTCC+TGG - chr2_3:16228423-16228442 None:intergenic 25.0%
!! AGGAGTATGTCTAATAATTA+TGG + chr2_3:16228422-16228441 Msa0281050:intron 25.0%
! TGAATTCGAAACAAAAATTG+TGG + chr2_3:16228695-16228714 Msa0281050:CDS 25.0%
! TTTGACTGTAATCTTAACAA+TGG - chr2_3:16228739-16228758 None:intergenic 25.0%
!! AAATCTAAGTGATGATGTTT+AGG + chr2_3:16229041-16229060 Msa0281050:three_prime_UTR 25.0%
CTTCAACAATTTCAACACTT+TGG - chr2_3:16227988-16228007 None:intergenic 30.0%
!! CAAAGTGTTGAAATTGTTGA+AGG + chr2_3:16227986-16228005 Msa0281050:CDS 30.0%
GTTGAAATTGTTGAAGGAAA+TGG + chr2_3:16227992-16228011 Msa0281050:CDS 30.0%
AGACATGGATAACTTCTTAA+TGG - chr2_3:16228029-16228048 None:intergenic 30.0%
TCTTAAATTACCTTCAGACA+TGG - chr2_3:16228044-16228063 None:intergenic 30.0%
!! TGTAAAATTGTTTTACACCG+AGG + chr2_3:16228119-16228138 Msa0281050:intron 30.0%
! TAATTTGTGTAGCACAAAGT+TGG - chr2_3:16228595-16228614 None:intergenic 30.0%
!! TGTTTTGGATGAATTTGGTT+GGG + chr2_3:16229006-16229025 Msa0281050:three_prime_UTR 30.0%
CTTCAACAATTTCAACACTT+TGG - chr2_3:16227988-16228007 None:intergenic 30.0%
!! CAAAGTGTTGAAATTGTTGA+AGG + chr2_3:16227986-16228005 Msa0281050:CDS 30.0%
GTTGAAATTGTTGAAGGAAA+TGG + chr2_3:16227992-16228011 Msa0281050:CDS 30.0%
AGACATGGATAACTTCTTAA+TGG - chr2_3:16228029-16228048 None:intergenic 30.0%
TCTTAAATTACCTTCAGACA+TGG - chr2_3:16228044-16228063 None:intergenic 30.0%
!! TGTAAAATTGTTTTACACCG+AGG + chr2_3:16228119-16228138 Msa0281050:intron 30.0%
! TAATTTGTGTAGCACAAAGT+TGG - chr2_3:16228595-16228614 None:intergenic 30.0%
!! TGTTTTGGATGAATTTGGTT+GGG + chr2_3:16229006-16229025 Msa0281050:three_prime_UTR 30.0%
! CTAGTATATAACTTGTGGTG+CGG - chr2_3:16227779-16227798 None:intergenic 35.0%
GAAATTGTTGAAGGAAATGG+AGG + chr2_3:16227995-16228014 Msa0281050:CDS 35.0%
GATAACTTCTTAATGGTTCC+TGG - chr2_3:16228022-16228041 None:intergenic 35.0%
AAGAAGTTATCCATGTCTGA+AGG + chr2_3:16228031-16228050 Msa0281050:CDS 35.0%
! TACACAATTCTTTGTTGTGC+TGG - chr2_3:16228160-16228179 None:intergenic 35.0%
ATAATACATAAGCTCGTTCC+AGG + chr2_3:16228402-16228421 Msa0281050:intron 35.0%
TATAATGGCTGTATTGCAGA+TGG + chr2_3:16228564-16228583 Msa0281050:intron 35.0%
CAAATTAGATGCAGTAGATG+AGG + chr2_3:16228608-16228627 Msa0281050:CDS 35.0%
TTCGAAACAAAAATTGTGGC+TGG + chr2_3:16228699-16228718 Msa0281050:CDS 35.0%
GTTTGATGTTGAGATAGTGT+CGG + chr2_3:16228973-16228992 Msa0281050:three_prime_UTR 35.0%
!! AGTGGTGTTTTGGATGAATT+TGG + chr2_3:16229001-16229020 Msa0281050:three_prime_UTR 35.0%
!! GTGTTTTGGATGAATTTGGT+TGG + chr2_3:16229005-16229024 Msa0281050:three_prime_UTR 35.0%
! CTAGTATATAACTTGTGGTG+CGG - chr2_3:16227779-16227798 None:intergenic 35.0%
GAAATTGTTGAAGGAAATGG+AGG + chr2_3:16227995-16228014 Msa0281050:CDS 35.0%
GATAACTTCTTAATGGTTCC+TGG - chr2_3:16228022-16228041 None:intergenic 35.0%
AAGAAGTTATCCATGTCTGA+AGG + chr2_3:16228031-16228050 Msa0281050:CDS 35.0%
! TACACAATTCTTTGTTGTGC+TGG - chr2_3:16228160-16228179 None:intergenic 35.0%
ATAATACATAAGCTCGTTCC+AGG + chr2_3:16228402-16228421 Msa0281050:intron 35.0%
TATAATGGCTGTATTGCAGA+TGG + chr2_3:16228564-16228583 Msa0281050:intron 35.0%
CAAATTAGATGCAGTAGATG+AGG + chr2_3:16228608-16228627 Msa0281050:CDS 35.0%
TTCGAAACAAAAATTGTGGC+TGG + chr2_3:16228699-16228718 Msa0281050:CDS 35.0%
GTTTGATGTTGAGATAGTGT+CGG + chr2_3:16228973-16228992 Msa0281050:three_prime_UTR 35.0%
!! AGTGGTGTTTTGGATGAATT+TGG + chr2_3:16229001-16229020 Msa0281050:three_prime_UTR 35.0%
!! GTGTTTTGGATGAATTTGGT+TGG + chr2_3:16229005-16229024 Msa0281050:three_prime_UTR 35.0%
TGATGAACATGTATCAACCG+TGG + chr2_3:16227892-16227911 Msa0281050:CDS 40.0%
! AGAGCTTTGTAGAGTTTAGC+TGG - chr2_3:16227920-16227939 None:intergenic 40.0%
TGCTGATGAAATCATCCCAA+AGG + chr2_3:16227949-16227968 Msa0281050:CDS 40.0%
CGTGACATATTGAAGAGTTG+TGG + chr2_3:16228212-16228231 Msa0281050:intron 40.0%
ACAGTCAAATACCACACCAA+AGG + chr2_3:16228750-16228769 Msa0281050:CDS 40.0%
!!! ATTTTGGTTGTGTCGTGTCA+TGG + chr2_3:16228896-16228915 Msa0281050:three_prime_UTR 40.0%
!! TTTTGGTTGTGTCGTGTCAT+GGG + chr2_3:16228897-16228916 Msa0281050:three_prime_UTR 40.0%
TGATGAACATGTATCAACCG+TGG + chr2_3:16227892-16227911 Msa0281050:CDS 40.0%
! AGAGCTTTGTAGAGTTTAGC+TGG - chr2_3:16227920-16227939 None:intergenic 40.0%
TGCTGATGAAATCATCCCAA+AGG + chr2_3:16227949-16227968 Msa0281050:CDS 40.0%
CGTGACATATTGAAGAGTTG+TGG + chr2_3:16228212-16228231 Msa0281050:intron 40.0%
ACAGTCAAATACCACACCAA+AGG + chr2_3:16228750-16228769 Msa0281050:CDS 40.0%
!!! ATTTTGGTTGTGTCGTGTCA+TGG + chr2_3:16228896-16228915 Msa0281050:three_prime_UTR 40.0%
!! TTTTGGTTGTGTCGTGTCAT+GGG + chr2_3:16228897-16228916 Msa0281050:three_prime_UTR 40.0%
ATTTCAACACTTTGGGCAGC+TGG - chr2_3:16227980-16227999 None:intergenic 45.0%
!! GGCGAATTTTGATCGATCCT+CGG - chr2_3:16228139-16228158 None:intergenic 45.0%
TGCAGTAGATGAGGCAAACT+TGG + chr2_3:16228617-16228636 Msa0281050:CDS 45.0%
GCAGTAGATGAGGCAAACTT+GGG + chr2_3:16228618-16228637 Msa0281050:CDS 45.0%
CTTGGGATACAACTACAGCT+TGG + chr2_3:16228635-16228654 Msa0281050:CDS 45.0%
GGATACAACTACAGCTTGGT+AGG + chr2_3:16228639-16228658 Msa0281050:CDS 45.0%
TACAACTACAGCTTGGTAGG+AGG + chr2_3:16228642-16228661 Msa0281050:CDS 45.0%
!! AAAATTGTGGCTGGCTCTGA+TGG + chr2_3:16228708-16228727 Msa0281050:CDS 45.0%
AGATAGAGCTGCATCACCTT+TGG - chr2_3:16228769-16228788 None:intergenic 45.0%
TGCAGTCCGTGATGAAACTA+AGG + chr2_3:16228791-16228810 Msa0281050:CDS 45.0%
!! CTCTGGCCTTAGTTTCATCA+CGG - chr2_3:16228800-16228819 None:intergenic 45.0%
CTTGATAAGTCCAGTTCCTC+TGG - chr2_3:16228817-16228836 None:intergenic 45.0%
CAGAGGAACTGGACTTATCA+AGG + chr2_3:16228815-16228834 Msa0281050:CDS 45.0%
TGGACTTATCAAGGCCATTG+AGG + chr2_3:16228824-16228843 Msa0281050:CDS 45.0%
GGACTTATCAAGGCCATTGA+GGG + chr2_3:16228825-16228844 Msa0281050:CDS 45.0%
!!! GAGATAGTGTCGGTTTTGAG+TGG + chr2_3:16228983-16229002 Msa0281050:three_prime_UTR 45.0%
!!! GTCGGTTTTGAGTGGTGTTT+TGG + chr2_3:16228991-16229010 Msa0281050:three_prime_UTR 45.0%
ATTTCAACACTTTGGGCAGC+TGG - chr2_3:16227980-16227999 None:intergenic 45.0%
!! GGCGAATTTTGATCGATCCT+CGG - chr2_3:16228139-16228158 None:intergenic 45.0%
TGCAGTAGATGAGGCAAACT+TGG + chr2_3:16228617-16228636 Msa0281050:CDS 45.0%
GCAGTAGATGAGGCAAACTT+GGG + chr2_3:16228618-16228637 Msa0281050:CDS 45.0%
CTTGGGATACAACTACAGCT+TGG + chr2_3:16228635-16228654 Msa0281050:CDS 45.0%
GGATACAACTACAGCTTGGT+AGG + chr2_3:16228639-16228658 Msa0281050:CDS 45.0%
TACAACTACAGCTTGGTAGG+AGG + chr2_3:16228642-16228661 Msa0281050:CDS 45.0%
!! AAAATTGTGGCTGGCTCTGA+TGG + chr2_3:16228708-16228727 Msa0281050:CDS 45.0%
AGATAGAGCTGCATCACCTT+TGG - chr2_3:16228769-16228788 None:intergenic 45.0%
TGCAGTCCGTGATGAAACTA+AGG + chr2_3:16228791-16228810 Msa0281050:CDS 45.0%
!! CTCTGGCCTTAGTTTCATCA+CGG - chr2_3:16228800-16228819 None:intergenic 45.0%
CTTGATAAGTCCAGTTCCTC+TGG - chr2_3:16228817-16228836 None:intergenic 45.0%
CAGAGGAACTGGACTTATCA+AGG + chr2_3:16228815-16228834 Msa0281050:CDS 45.0%
TGGACTTATCAAGGCCATTG+AGG + chr2_3:16228824-16228843 Msa0281050:CDS 45.0%
GGACTTATCAAGGCCATTGA+GGG + chr2_3:16228825-16228844 Msa0281050:CDS 45.0%
!!! GAGATAGTGTCGGTTTTGAG+TGG + chr2_3:16228983-16229002 Msa0281050:three_prime_UTR 45.0%
!!! GTCGGTTTTGAGTGGTGTTT+TGG + chr2_3:16228991-16229010 Msa0281050:three_prime_UTR 45.0%
GTAGAGTTTAGCTGGAGCCA+CGG - chr2_3:16227912-16227931 None:intergenic 50.0%
GTTGAAGGAAATGGAGGACC+AGG + chr2_3:16228001-16228020 Msa0281050:CDS 50.0%
TACAGCTTGGTAGGAGGAAC+AGG + chr2_3:16228648-16228667 Msa0281050:CDS 50.0%
ACAGCTTGGTAGGAGGAACA+GGG + chr2_3:16228649-16228668 Msa0281050:CDS 50.0%
CGTGATGAAACTAAGGCCAG+AGG + chr2_3:16228798-16228817 Msa0281050:CDS 50.0%
GAAACTAAGGCCAGAGGAAC+TGG + chr2_3:16228804-16228823 Msa0281050:CDS 50.0%
GTAGAGTTTAGCTGGAGCCA+CGG - chr2_3:16227912-16227931 None:intergenic 50.0%
GTTGAAGGAAATGGAGGACC+AGG + chr2_3:16228001-16228020 Msa0281050:CDS 50.0%
TACAGCTTGGTAGGAGGAAC+AGG + chr2_3:16228648-16228667 Msa0281050:CDS 50.0%
ACAGCTTGGTAGGAGGAACA+GGG + chr2_3:16228649-16228668 Msa0281050:CDS 50.0%
CGTGATGAAACTAAGGCCAG+AGG + chr2_3:16228798-16228817 Msa0281050:CDS 50.0%
GAAACTAAGGCCAGAGGAAC+TGG + chr2_3:16228804-16228823 Msa0281050:CDS 50.0%
GGGCAGCTGGAATCACCTTT+GGG - chr2_3:16227967-16227986 None:intergenic 55.0%
TGGGCAGCTGGAATCACCTT+TGG - chr2_3:16227968-16227987 None:intergenic 55.0%
CTTGGTAGGAGGAACAGGGT+TGG + chr2_3:16228653-16228672 Msa0281050:CDS 55.0%
!! ATTGTGGCTGGCTCTGATGG+TGG + chr2_3:16228711-16228730 Msa0281050:CDS 55.0%
GAGCTGCATCACCTTTGGTG+TGG - chr2_3:16228764-16228783 None:intergenic 55.0%
GGGCAGCTGGAATCACCTTT+GGG - chr2_3:16227967-16227986 None:intergenic 55.0%
TGGGCAGCTGGAATCACCTT+TGG - chr2_3:16227968-16227987 None:intergenic 55.0%
CTTGGTAGGAGGAACAGGGT+TGG + chr2_3:16228653-16228672 Msa0281050:CDS 55.0%
!! ATTGTGGCTGGCTCTGATGG+TGG + chr2_3:16228711-16228730 Msa0281050:CDS 55.0%
GAGCTGCATCACCTTTGGTG+TGG - chr2_3:16228764-16228783 None:intergenic 55.0%
TGCCACGACGTAGCCCTCAA+TGG - chr2_3:16228841-16228860 None:intergenic 60.0%
TGCCACGACGTAGCCCTCAA+TGG - chr2_3:16228841-16228860 None:intergenic 60.0%
GGCCATTGAGGGCTACGTCG+TGG + chr2_3:16228836-16228855 Msa0281050:CDS 65.0%
GGCCATTGAGGGCTACGTCG+TGG + chr2_3:16228836-16228855 Msa0281050:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 16227774 16229140 16227774 ID=Msa0281050;Name=Msa0281050
chr2_3 mRNA 16227774 16229140 16227774 ID=Msa0281050-mRNA-1;Parent=Msa0281050;Name=Msa0281050-mRNA-1;_AED=0.06;_eAED=0.06;_QI=98|1|1|1|1|1|2|265|157
chr2_3 exon 16227774 16228052 16227774 ID=Msa0281050-mRNA-1:exon:6662;Parent=Msa0281050-mRNA-1
chr2_3 exon 16228583 16229140 16228583 ID=Msa0281050-mRNA-1:exon:6663;Parent=Msa0281050-mRNA-1
chr2_3 five_prime_UTR 16227774 16227871 16227774 ID=Msa0281050-mRNA-1:five_prime_utr;Parent=Msa0281050-mRNA-1
chr2_3 CDS 16227872 16228052 16227872 ID=Msa0281050-mRNA-1:cds;Parent=Msa0281050-mRNA-1
chr2_3 CDS 16228583 16228875 16228583 ID=Msa0281050-mRNA-1:cds;Parent=Msa0281050-mRNA-1
chr2_3 three_prime_UTR 16228876 16229140 16228876 ID=Msa0281050-mRNA-1:three_prime_utr;Parent=Msa0281050-mRNA-1
Gene Sequence

>Msa0281050

ATGGGTGTTTTTACTTTCAATGATGAACATGTATCAACCGTGGCTCCAGCTAAACTCTACAAAGCTCTTGCAAAAGATGCTGATGAAATCATCCCAAAGGTGATTCCAGCTGCCCAAAGTGTTGAAATTGTTGAAGGAAATGGAGGACCAGGAACCATTAAGAAGTTATCCATGTCTGAAGATGGCAAAACCAACTTTGTGCTACACAAATTAGATGCAGTAGATGAGGCAAACTTGGGATACAACTACAGCTTGGTAGGAGGAACAGGGTTGGATGAAAGTTTAGAGAAAGTTGAATTCGAAACAAAAATTGTGGCTGGCTCTGATGGTGGATCCATTGTTAAGATTACAGTCAAATACCACACCAAAGGTGATGCAGCTCTATCTGATGCAGTCCGTGATGAAACTAAGGCCAGAGGAACTGGACTTATCAAGGCCATTGAGGGCTACGTCGTGGCAAACCCTAATTACTAA
Protein sequence

>Msa0281050

MGVFTFNDEHVSTVAPAKLYKALAKDADEIIPKVIPAAQSVEIVEGNGGPGTIKKLSMSEDGKTNFVLHKLDAVDEANLGYNYSLVGGTGLDESLEKVEFETKIVAGSDGGSIVKITVKYHTKGDAALSDAVRDETKARGTGLIKAIEGYVVANPNY*