AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0865820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0865820 MtrunA17_Chr5g0447941 98.397 312 5 0 1 312 1 312 0.0 633
Msa0865820 MtrunA17_Chr5g0447951 98.077 312 6 0 1 312 1 312 0.0 632
Msa0865820 MtrunA17_Chr5g0447961 98.077 312 6 0 1 312 1 312 0.0 632
Msa0865820 MtrunA17_Chr3g0121001 68.506 308 96 1 6 312 7 314 2.45e-163 457
Msa0865820 MtrunA17_Chr1g0173621 63.279 305 109 3 1 302 1 305 3.82e-139 395
Msa0865820 MtrunA17_Chr6g0479981 50.165 303 144 5 1 300 1 299 9.71e-97 288
Msa0865820 MtrunA17_Chr6g0480011 49.677 310 137 8 1 300 1 301 3.74e-96 287
Msa0865820 MtrunA17_Chr6g0480021 48.366 306 124 7 19 311 16 300 4.95e-93 278
Msa0865820 MtrunA17_Chr8g0368921 42.606 284 160 2 19 300 15 297 6.25e-75 233
Msa0865820 MtrunA17_Chr4g0018921 41.404 285 162 4 18 300 12 293 4.94e-73 228
Msa0865820 MtrunA17_Chr7g0239701 43.015 272 143 3 49 311 47 315 6.65e-71 222
Msa0865820 MtrunA17_Chr8g0368931 43.056 288 153 4 19 302 15 295 3.32e-70 220
Msa0865820 MtrunA17_Chr4g0009531 43.206 287 148 5 19 300 15 291 7.77e-66 209
Msa0865820 MtrunA17_Chr4g0009581 41.639 305 150 6 19 312 16 303 4.57e-64 204
Msa0865820 MtrunA17_Chr4g0036261 58.750 160 65 1 139 297 1 160 3.29e-60 190
Msa0865820 MtrunA17_Chr4g0036051 39.088 307 172 6 15 310 6 308 3.01e-59 192
Msa0865820 MtrunA17_Chr7g0243551 38.321 274 161 5 20 292 23 289 1.20e-57 187
Msa0865820 MtrunA17_Chr4g0036301 52.941 170 70 3 151 311 1 169 1.09e-51 168
Msa0865820 MtrunA17_Chr4g0036321 52.353 170 71 3 151 311 1 169 2.55e-50 164
Msa0865820 MtrunA17_Chr4g0009621 42.922 219 113 2 82 300 1 207 2.37e-44 151
Msa0865820 MtrunA17_Chr6g0479811 46.018 113 56 2 191 300 1 111 5.75e-26 99.8
Msa0865820 MtrunA17_Chr4g0036291 51.111 90 42 2 20 107 17 106 3.83e-24 94.7
Msa0865820 MtrunA17_Chr4g0036311 44.037 109 56 3 1 107 1 106 1.91e-23 92.8
Msa0865820 MtrunA17_Chr4g0036251 47.222 108 48 3 1 107 1 100 2.84e-23 92.0
Msa0865820 MtrunA17_Chr6g0479791 49.412 85 32 3 237 311 18 101 6.10e-17 75.1
Msa0865820 MtrunA17_Chr3g0095421 25.836 329 160 13 15 285 42 344 1.88e-16 79.0
Msa0865820 MtrunA17_Chr7g0222171 25.087 287 161 9 41 292 43 310 2.50e-12 66.6
Msa0865820 MtrunA17_Chr1g0204651 23.052 308 168 10 24 289 29 309 9.39e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0865820 AT1G59960.1 53.571 308 132 6 1 300 1 305 9.78e-113 329
Msa0865820 AT1G59950.1 55.903 288 117 5 20 300 15 299 9.51e-106 311
Msa0865820 AT2G37770.2 44.056 286 149 4 19 300 15 293 2.77e-77 239
Msa0865820 AT2G37790.1 43.007 286 152 4 19 300 15 293 5.45e-76 235
Msa0865820 AT5G62420.1 44.014 284 153 4 20 300 14 294 1.69e-75 234
Msa0865820 AT5G01670.1 41.901 284 156 6 19 300 23 299 9.17e-73 227
Msa0865820 AT2G37760.4 42.268 291 141 5 19 299 15 288 9.89e-72 224
Msa0865820 AT2G37760.3 42.268 291 141 5 19 299 15 288 9.89e-72 224
Msa0865820 AT2G37760.5 42.708 288 138 5 19 296 15 285 7.89e-71 221
Msa0865820 AT2G37760.2 42.069 290 141 5 19 298 15 287 7.22e-70 219
Msa0865820 AT2G37760.1 42.069 290 141 5 19 298 15 287 7.22e-70 219
Msa0865820 AT3G53880.1 41.696 283 160 3 19 300 15 293 2.67e-69 218
Msa0865820 AT2G21260.1 39.384 292 162 6 15 295 6 293 2.28e-67 213
Msa0865820 AT3G53880.2 41.786 280 152 4 19 294 15 287 5.86e-67 212
Msa0865820 AT5G01670.2 38.264 311 156 7 19 300 23 326 9.52e-67 213
Msa0865820 AT2G21250.1 38.111 307 175 6 15 310 6 308 4.58e-66 210
Msa0865820 AT2G37760.6 41.700 247 123 4 62 298 6 241 2.18e-57 186
Msa0865820 AT2G37760.7 41.700 247 123 4 62 298 6 241 2.18e-57 186
Msa0865820 AT2G37770.1 47.208 197 94 3 19 212 15 204 4.42e-54 178
Msa0865820 AT2G21250.2 42.381 210 110 5 15 217 6 211 2.64e-48 162
Msa0865820 AT2G21260.2 35.455 220 129 5 87 295 8 225 1.89e-41 144
Msa0865820 AT1G06690.1 26.990 289 155 9 35 285 85 355 2.47e-19 87.8
Msa0865820 AT5G53580.1 24.561 285 160 10 44 290 80 347 2.67e-15 76.3
Msa0865820 AT1G60680.1 26.284 331 177 15 15 300 14 322 2.99e-15 75.9
Msa0865820 AT1G60750.1 25.532 282 160 11 44 300 50 306 7.05e-12 65.9
Msa0865820 AT1G60690.1 24.204 314 181 11 25 300 27 321 2.29e-11 64.3

Find 65 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACTCTTCAATTGGACTATT+TGG 0.148242 5_4:-66998911 Msa0865820:CDS
AATCAAAGATACGCAAATTT+TGG 0.165725 5_4:+66998316 None:intergenic
TGCTTGCACCTTTCCTCAAC+GGG 0.292412 5_4:+66998484 None:intergenic
TGGACTTGTATTTGATTCAT+TGG 0.300948 5_4:-66998891 Msa0865820:CDS
ATTGGAAATGTAAACTTTCC+AGG 0.315067 5_4:+66998853 None:intergenic
GTGTCTATAACCTTGTTTGA+TGG 0.333209 5_4:+66999208 None:intergenic
TCATTCTCCATAACTTCATT+TGG 0.362803 5_4:+66998456 None:intergenic
AAAATTTGCGTATCTTTGAT+TGG 0.369647 5_4:-66998314 Msa0865820:CDS
TCTTTCTTACATGTGAAGTC+AGG 0.371382 5_4:+66999254 None:intergenic
CATTTGATGTGAAAGGTGTT+TGG 0.375654 5_4:-66998810 Msa0865820:CDS
CTTGGACTCACTAAAGCTAT+TGG 0.375778 5_4:-66998763 Msa0865820:CDS
CAAACACCTTTCACATCAAA+TGG 0.378027 5_4:+66998811 None:intergenic
AAGAGATCTGCCACATCAAT+TGG 0.378807 5_4:+66998835 None:intergenic
AGTCCAGGCTTGGTTGGTCC+AGG 0.384417 5_4:+66998234 None:intergenic
TTGCACAAATTTCTCTAAGA+TGG 0.398611 5_4:-66998395 Msa0865820:CDS
TTCATGTAGGACTCTTCAAT+TGG 0.407231 5_4:-66998920 Msa0865820:intron
ATCCCTGGACCAACCAAGCC+TGG 0.412790 5_4:-66998237 Msa0865820:CDS
ATTTGATGTGAAAGGTGTTT+GGG 0.418218 5_4:-66998809 Msa0865820:CDS
TCTTTCCTTATCATAGCTCT+TGG 0.419142 5_4:+66998344 None:intergenic
TGTTCCCAAGAGCTATGATA+AGG 0.425757 5_4:-66998349 Msa0865820:CDS
TTTGATACTGCTGCTGCCTA+TGG 0.432708 5_4:-66999185 Msa0865820:CDS
CTTTCCTTATCATAGCTCTT+GGG 0.433848 5_4:+66998345 None:intergenic
TTGAAAGAGGCAATTGAACT+TGG 0.435066 5_4:-66999137 Msa0865820:CDS
CAGGGGACCAAATGAAGTTA+TGG 0.449659 5_4:-66998463 Msa0865820:CDS
AAGCAGAATCGTTTGATCCC+TGG 0.463702 5_4:-66998252 Msa0865820:CDS
CGTTGAGGAAAGGTGCAAGC+AGG 0.464952 5_4:-66998482 Msa0865820:CDS
AAAGTTTAGAAGTAACAAAA+AGG 0.467615 5_4:+66999096 None:intergenic
CTGCTTGCACCTTTCCTCAA+CGG 0.474588 5_4:+66998483 None:intergenic
AAGTTTCAAGCTTTCCTCCA+TGG 0.483539 5_4:+66998783 None:intergenic
ATGGAGGAAAGCTTGAAACT+TGG 0.498400 5_4:-66998781 Msa0865820:CDS
CTTTCTTACATGTGAAGTCA+GGG 0.506502 5_4:+66999255 None:intergenic
AGTACTAATGTAAAATAACT+TGG 0.506920 5_4:+66998055 None:intergenic
TGTTTGTAAGAACCTTTGTT+GGG 0.514265 5_4:+66999321 None:intergenic
CTCTTACCATTTGATGTGAA+AGG 0.516557 5_4:-66998817 Msa0865820:CDS
CAATTGAAGATGCCTGTAGT+TGG 0.517264 5_4:-66999290 Msa0865820:CDS
TCTTGGTGAAGCTTTGAAAG+AGG 0.518146 5_4:-66999150 Msa0865820:CDS
GTCCAGGCTTGGTTGGTCCA+GGG 0.519273 5_4:+66998235 None:intergenic
GAGGTCATTGAGTCCAGGCT+TGG 0.520820 5_4:+66998224 None:intergenic
AAGAGCTTGTTCTGAGCCAT+AGG 0.528055 5_4:+66999169 None:intergenic
GCTGATCCCATTCCAACTAC+AGG 0.540084 5_4:+66999278 None:intergenic
TATGGCTCAGAACAAGCTCT+TGG 0.544655 5_4:-66999167 Msa0865820:CDS
GAAGATGCCTGTAGTTGGAA+TGG 0.546457 5_4:-66999285 Msa0865820:CDS
GTTGAGGAAAGGTGCAAGCA+GGG 0.550606 5_4:-66998481 Msa0865820:CDS
TCATTGAGTCCAGGCTTGGT+TGG 0.552459 5_4:+66998228 None:intergenic
TGGCCACTTAGTTCTCAGCC+TGG 0.559322 5_4:-66998871 Msa0865820:CDS
AAGATGCCTGTAGTTGGAAT+GGG 0.562876 5_4:-66999284 Msa0865820:CDS
TCATAGAGGTCATTGAGTCC+AGG 0.572409 5_4:+66998219 None:intergenic
GTGTTTGTAAGAACCTTTGT+TGG 0.579407 5_4:+66999320 None:intergenic
AGGTGGAGATGAACCTTGCA+TGG 0.584406 5_4:-66998566 Msa0865820:CDS
ATCATTGAAGCCATCAAACA+AGG 0.587661 5_4:-66999218 Msa0865820:CDS
GAAAGGTGTTTGGGAATCCA+TGG 0.587744 5_4:-66998800 Msa0865820:CDS
CTAAGATGGCTATATGAACA+AGG 0.588672 5_4:-66998381 Msa0865820:CDS
TGAATTACTTGATTGACTGC+AGG 0.596137 5_4:+66998682 None:intergenic
GTTTACATTTCCAATTGATG+TGG 0.608506 5_4:-66998845 Msa0865820:CDS
TTTCTTACATGTGAAGTCAG+GGG 0.620409 5_4:+66999256 None:intergenic
AGAGCAGGAATAACAAGATG+AGG 0.624425 5_4:+66999056 None:intergenic
TTGAGGAAAGGTGCAAGCAG+GGG 0.624444 5_4:-66998480 Msa0865820:CDS
CAGGAATAACAAGATGAGGA+TGG 0.629084 5_4:+66999060 None:intergenic
TTTCCTCAACGGGGAAAATG+CGG 0.632608 5_4:+66998494 None:intergenic
AAAGAGATTGCAGATGCACA+TGG 0.633321 5_4:-66998426 Msa0865820:CDS
TTTCCAGGCTGAGAACTAAG+TGG 0.647166 5_4:+66998868 None:intergenic
TAGTGTTGAAATCCCAACAA+AGG 0.659490 5_4:-66999333 Msa0865820:CDS
ATTGACTGCAGGAAGAACAG+TGG 0.718468 5_4:+66998693 None:intergenic
AGGTGTTTGGGAATCCATGG+AGG 0.719619 5_4:-66998797 Msa0865820:CDS
GCTTGCACCTTTCCTCAACG+GGG 0.723595 5_4:+66998485 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATCAATATTACATTCATT+TGG - chr5_4:66998464-66998483 Msa0865820:CDS 15.0%
!! CTAAAAATTAATCAAAACTT+AGG + chr5_4:66998813-66998832 None:intergenic 15.0%
!!! AATTAAACAGATAGATTTTA+AGG + chr5_4:66999303-66999322 None:intergenic 15.0%
!! ATATCAATATTACATTCATT+TGG - chr5_4:66998464-66998483 Msa0865820:CDS 15.0%
!! CTAAAAATTAATCAAAACTT+AGG + chr5_4:66998813-66998832 None:intergenic 15.0%
!!! AATTAAACAGATAGATTTTA+AGG + chr5_4:66999303-66999322 None:intergenic 15.0%
!!! ATGTTGTTTTTTTTGTTGTT+GGG + chr5_4:66998104-66998123 None:intergenic 20.0%
!! AACAACAAAAAAAACAACAT+GGG - chr5_4:66998104-66998123 Msa0865820:three_prime_UTR 20.0%
!! AAAGTTTAGAAGTAACAAAA+AGG + chr5_4:66998367-66998386 None:intergenic 20.0%
!!! TTTTTGTTACTTCTAAACTT+TGG - chr5_4:66998366-66998385 Msa0865820:CDS 20.0%
!!! TTTTGTTACTTCTAAACTTT+GGG - chr5_4:66998367-66998386 Msa0865820:CDS 20.0%
!!! TTGATTTGTTAATTTCATGT+AGG - chr5_4:66998527-66998546 Msa0865820:CDS 20.0%
!!! TATTTTTTTAGTCATCATAG+AGG + chr5_4:66999258-66999277 None:intergenic 20.0%
!! AGTACTAATGTAAAATAACT+TGG + chr5_4:66999408-66999427 None:intergenic 20.0%
!!! ATGTTGTTTTTTTTGTTGTT+GGG + chr5_4:66998104-66998123 None:intergenic 20.0%
!! AACAACAAAAAAAACAACAT+GGG - chr5_4:66998104-66998123 Msa0865820:three_prime_UTR 20.0%
!! AAAGTTTAGAAGTAACAAAA+AGG + chr5_4:66998367-66998386 None:intergenic 20.0%
!!! TTTTTGTTACTTCTAAACTT+TGG - chr5_4:66998366-66998385 Msa0865820:CDS 20.0%
!!! TTTTGTTACTTCTAAACTTT+GGG - chr5_4:66998367-66998386 Msa0865820:CDS 20.0%
!!! TTGATTTGTTAATTTCATGT+AGG - chr5_4:66998527-66998546 Msa0865820:CDS 20.0%
!!! TATTTTTTTAGTCATCATAG+AGG + chr5_4:66999258-66999277 None:intergenic 20.0%
!! AGTACTAATGTAAAATAACT+TGG + chr5_4:66999408-66999427 None:intergenic 20.0%
!!! CATGTTGTTTTTTTTGTTGT+TGG + chr5_4:66998105-66998124 None:intergenic 25.0%
! CAACAACAAAAAAAACAACA+TGG - chr5_4:66998103-66998122 Msa0865820:three_prime_UTR 25.0%
! TCAATATTACATTCATTTGG+AGG - chr5_4:66998467-66998486 Msa0865820:CDS 25.0%
! CAATGAACTCATAAATGTAT+AGG - chr5_4:66998874-66998893 Msa0865820:CDS 25.0%
!! AATCAAAGATACGCAAATTT+TGG + chr5_4:66999147-66999166 None:intergenic 25.0%
! AAAATTTGCGTATCTTTGAT+TGG - chr5_4:66999146-66999165 Msa0865820:CDS 25.0%
!!! GATTTTAAGGCAAACTTAAA+AGG + chr5_4:66999290-66999309 None:intergenic 25.0%
!!! CATGTTGTTTTTTTTGTTGT+TGG + chr5_4:66998105-66998124 None:intergenic 25.0%
! CAACAACAAAAAAAACAACA+TGG - chr5_4:66998103-66998122 Msa0865820:three_prime_UTR 25.0%
! TCAATATTACATTCATTTGG+AGG - chr5_4:66998467-66998486 Msa0865820:CDS 25.0%
! CAATGAACTCATAAATGTAT+AGG - chr5_4:66998874-66998893 Msa0865820:CDS 25.0%
!! AATCAAAGATACGCAAATTT+TGG + chr5_4:66999147-66999166 None:intergenic 25.0%
! AAAATTTGCGTATCTTTGAT+TGG - chr5_4:66999146-66999165 Msa0865820:CDS 25.0%
!!! GATTTTAAGGCAAACTTAAA+AGG + chr5_4:66999290-66999309 None:intergenic 25.0%
!!! GTTTTTTTTGTTGTTGGGTT+GGG + chr5_4:66998099-66998118 None:intergenic 30.0%
!!! TGTTTTTTTTGTTGTTGGGT+TGG + chr5_4:66998100-66998119 None:intergenic 30.0%
TGTTTGTAAGAACCTTTGTT+GGG + chr5_4:66998142-66998161 None:intergenic 30.0%
TGGACTTGTATTTGATTCAT+TGG - chr5_4:66998569-66998588 Msa0865820:intron 30.0%
ATTGGAAATGTAAACTTTCC+AGG + chr5_4:66998610-66998629 None:intergenic 30.0%
GTTTACATTTCCAATTGATG+TGG - chr5_4:66998615-66998634 Msa0865820:intron 30.0%
!! ATTTGATGTGAAAGGTGTTT+GGG - chr5_4:66998651-66998670 Msa0865820:intron 30.0%
TGAACTCATAAATGTATAGG+TGG - chr5_4:66998877-66998896 Msa0865820:CDS 30.0%
TCATTCTCCATAACTTCATT+TGG + chr5_4:66999007-66999026 None:intergenic 30.0%
! TTGCACAAATTTCTCTAAGA+TGG - chr5_4:66999065-66999084 Msa0865820:CDS 30.0%
!!! TTGTTGTTTCTTTTGAGCTT+GGG - chr5_4:66999328-66999347 Msa0865820:CDS 30.0%
CAAACTCGTTTCAAAAACAA+GGG + chr5_4:66999358-66999377 None:intergenic 30.0%
TCAAACTCGTTTCAAAAACA+AGG + chr5_4:66999359-66999378 None:intergenic 30.0%
!!! GTTTTTTTTGTTGTTGGGTT+GGG + chr5_4:66998099-66998118 None:intergenic 30.0%
!!! TGTTTTTTTTGTTGTTGGGT+TGG + chr5_4:66998100-66998119 None:intergenic 30.0%
TGTTTGTAAGAACCTTTGTT+GGG + chr5_4:66998142-66998161 None:intergenic 30.0%
TGGACTTGTATTTGATTCAT+TGG - chr5_4:66998569-66998588 Msa0865820:intron 30.0%
ATTGGAAATGTAAACTTTCC+AGG + chr5_4:66998610-66998629 None:intergenic 30.0%
GTTTACATTTCCAATTGATG+TGG - chr5_4:66998615-66998634 Msa0865820:intron 30.0%
!! ATTTGATGTGAAAGGTGTTT+GGG - chr5_4:66998651-66998670 Msa0865820:intron 30.0%
TGAACTCATAAATGTATAGG+TGG - chr5_4:66998877-66998896 Msa0865820:CDS 30.0%
TCATTCTCCATAACTTCATT+TGG + chr5_4:66999007-66999026 None:intergenic 30.0%
! TTGCACAAATTTCTCTAAGA+TGG - chr5_4:66999065-66999084 Msa0865820:CDS 30.0%
!!! TTGTTGTTTCTTTTGAGCTT+GGG - chr5_4:66999328-66999347 Msa0865820:CDS 30.0%
CAAACTCGTTTCAAAAACAA+GGG + chr5_4:66999358-66999377 None:intergenic 30.0%
TCAAACTCGTTTCAAAAACA+AGG + chr5_4:66999359-66999378 None:intergenic 30.0%
! TAGTGTTGAAATCCCAACAA+AGG - chr5_4:66998127-66998146 Msa0865820:three_prime_UTR 35.0%
GTGTTTGTAAGAACCTTTGT+TGG + chr5_4:66998143-66998162 None:intergenic 35.0%
TTTCTTACATGTGAAGTCAG+GGG + chr5_4:66998207-66998226 None:intergenic 35.0%
CTTTCTTACATGTGAAGTCA+GGG + chr5_4:66998208-66998227 None:intergenic 35.0%
TCTTTCTTACATGTGAAGTC+AGG + chr5_4:66998209-66998228 None:intergenic 35.0%
ATCATTGAAGCCATCAAACA+AGG - chr5_4:66998242-66998261 Msa0865820:CDS 35.0%
! GTGTCTATAACCTTGTTTGA+TGG + chr5_4:66998255-66998274 None:intergenic 35.0%
TTGAAAGAGGCAATTGAACT+TGG - chr5_4:66998323-66998342 Msa0865820:CDS 35.0%
!! TTGAGAGATTTTTGAAGAGC+AGG + chr5_4:66998422-66998441 None:intergenic 35.0%
TTCATGTAGGACTCTTCAAT+TGG - chr5_4:66998540-66998559 Msa0865820:CDS 35.0%
GACTCTTCAATTGGACTATT+TGG - chr5_4:66998549-66998568 Msa0865820:CDS 35.0%
CTCTTACCATTTGATGTGAA+AGG - chr5_4:66998643-66998662 Msa0865820:intron 35.0%
CAAACACCTTTCACATCAAA+TGG + chr5_4:66998652-66998671 None:intergenic 35.0%
!! CATTTGATGTGAAAGGTGTT+TGG - chr5_4:66998650-66998669 Msa0865820:intron 35.0%
TGAATTACTTGATTGACTGC+AGG + chr5_4:66998781-66998800 None:intergenic 35.0%
CTAAGATGGCTATATGAACA+AGG - chr5_4:66999079-66999098 Msa0865820:CDS 35.0%
CTTTCCTTATCATAGCTCTT+GGG + chr5_4:66999118-66999137 None:intergenic 35.0%
TCTTTCCTTATCATAGCTCT+TGG + chr5_4:66999119-66999138 None:intergenic 35.0%
!!! CTTGTTGTTTCTTTTGAGCT+TGG - chr5_4:66999327-66999346 Msa0865820:CDS 35.0%
! TAGTGTTGAAATCCCAACAA+AGG - chr5_4:66998127-66998146 Msa0865820:three_prime_UTR 35.0%
GTGTTTGTAAGAACCTTTGT+TGG + chr5_4:66998143-66998162 None:intergenic 35.0%
TTTCTTACATGTGAAGTCAG+GGG + chr5_4:66998207-66998226 None:intergenic 35.0%
CTTTCTTACATGTGAAGTCA+GGG + chr5_4:66998208-66998227 None:intergenic 35.0%
TCTTTCTTACATGTGAAGTC+AGG + chr5_4:66998209-66998228 None:intergenic 35.0%
ATCATTGAAGCCATCAAACA+AGG - chr5_4:66998242-66998261 Msa0865820:CDS 35.0%
! GTGTCTATAACCTTGTTTGA+TGG + chr5_4:66998255-66998274 None:intergenic 35.0%
TTGAAAGAGGCAATTGAACT+TGG - chr5_4:66998323-66998342 Msa0865820:CDS 35.0%
!! TTGAGAGATTTTTGAAGAGC+AGG + chr5_4:66998422-66998441 None:intergenic 35.0%
TTCATGTAGGACTCTTCAAT+TGG - chr5_4:66998540-66998559 Msa0865820:CDS 35.0%
GACTCTTCAATTGGACTATT+TGG - chr5_4:66998549-66998568 Msa0865820:CDS 35.0%
CTCTTACCATTTGATGTGAA+AGG - chr5_4:66998643-66998662 Msa0865820:intron 35.0%
CAAACACCTTTCACATCAAA+TGG + chr5_4:66998652-66998671 None:intergenic 35.0%
!! CATTTGATGTGAAAGGTGTT+TGG - chr5_4:66998650-66998669 Msa0865820:intron 35.0%
TGAATTACTTGATTGACTGC+AGG + chr5_4:66998781-66998800 None:intergenic 35.0%
CTAAGATGGCTATATGAACA+AGG - chr5_4:66999079-66999098 Msa0865820:CDS 35.0%
CTTTCCTTATCATAGCTCTT+GGG + chr5_4:66999118-66999137 None:intergenic 35.0%
TCTTTCCTTATCATAGCTCT+TGG + chr5_4:66999119-66999138 None:intergenic 35.0%
!!! CTTGTTGTTTCTTTTGAGCT+TGG - chr5_4:66999327-66999346 Msa0865820:CDS 35.0%
!!! TTTTTGTTGTTGGGTTGGGA+AGG + chr5_4:66998095-66998114 None:intergenic 40.0%
CAATTGAAGATGCCTGTAGT+TGG - chr5_4:66998170-66998189 Msa0865820:three_prime_UTR 40.0%
AAGATGCCTGTAGTTGGAAT+GGG - chr5_4:66998176-66998195 Msa0865820:three_prime_UTR 40.0%
!! TCTTGGTGAAGCTTTGAAAG+AGG - chr5_4:66998310-66998329 Msa0865820:CDS 40.0%
CAGGAATAACAAGATGAGGA+TGG + chr5_4:66998403-66998422 None:intergenic 40.0%
AGAGCAGGAATAACAAGATG+AGG + chr5_4:66998407-66998426 None:intergenic 40.0%
AAGAGATCTGCCACATCAAT+TGG + chr5_4:66998628-66998647 None:intergenic 40.0%
AAGTTTCAAGCTTTCCTCCA+TGG + chr5_4:66998680-66998699 None:intergenic 40.0%
ATGGAGGAAAGCTTGAAACT+TGG - chr5_4:66998679-66998698 Msa0865820:intron 40.0%
CTTGGACTCACTAAAGCTAT+TGG - chr5_4:66998697-66998716 Msa0865820:CDS 40.0%
AAAGAGATTGCAGATGCACA+TGG - chr5_4:66999034-66999053 Msa0865820:intron 40.0%
TGTTCCCAAGAGCTATGATA+AGG - chr5_4:66999111-66999130 Msa0865820:CDS 40.0%
!!! TTTTTGTTGTTGGGTTGGGA+AGG + chr5_4:66998095-66998114 None:intergenic 40.0%
CAATTGAAGATGCCTGTAGT+TGG - chr5_4:66998170-66998189 Msa0865820:three_prime_UTR 40.0%
AAGATGCCTGTAGTTGGAAT+GGG - chr5_4:66998176-66998195 Msa0865820:three_prime_UTR 40.0%
!! TCTTGGTGAAGCTTTGAAAG+AGG - chr5_4:66998310-66998329 Msa0865820:CDS 40.0%
CAGGAATAACAAGATGAGGA+TGG + chr5_4:66998403-66998422 None:intergenic 40.0%
AGAGCAGGAATAACAAGATG+AGG + chr5_4:66998407-66998426 None:intergenic 40.0%
AAGAGATCTGCCACATCAAT+TGG + chr5_4:66998628-66998647 None:intergenic 40.0%
AAGTTTCAAGCTTTCCTCCA+TGG + chr5_4:66998680-66998699 None:intergenic 40.0%
ATGGAGGAAAGCTTGAAACT+TGG - chr5_4:66998679-66998698 Msa0865820:intron 40.0%
CTTGGACTCACTAAAGCTAT+TGG - chr5_4:66998697-66998716 Msa0865820:CDS 40.0%
AAAGAGATTGCAGATGCACA+TGG - chr5_4:66999034-66999053 Msa0865820:intron 40.0%
TGTTCCCAAGAGCTATGATA+AGG - chr5_4:66999111-66999130 Msa0865820:CDS 40.0%
GAAGATGCCTGTAGTTGGAA+TGG - chr5_4:66998175-66998194 Msa0865820:three_prime_UTR 45.0%
TTTGATACTGCTGCTGCCTA+TGG - chr5_4:66998275-66998294 Msa0865820:CDS 45.0%
! AAGAGCTTGTTCTGAGCCAT+AGG + chr5_4:66998294-66998313 None:intergenic 45.0%
TATGGCTCAGAACAAGCTCT+TGG - chr5_4:66998293-66998312 Msa0865820:CDS 45.0%
TTTCCAGGCTGAGAACTAAG+TGG + chr5_4:66998595-66998614 None:intergenic 45.0%
!! GAAAGGTGTTTGGGAATCCA+TGG - chr5_4:66998660-66998679 Msa0865820:intron 45.0%
ATTGACTGCAGGAAGAACAG+TGG + chr5_4:66998770-66998789 None:intergenic 45.0%
! GCTTCTTTTGTTGCCATGCA+AGG + chr5_4:66998910-66998929 None:intergenic 45.0%
! AGAGAGTTTTGCAACGCACA+CGG - chr5_4:66998932-66998951 Msa0865820:intron 45.0%
TTTCCTCAACGGGGAAAATG+CGG + chr5_4:66998969-66998988 None:intergenic 45.0%
CAGGGGACCAAATGAAGTTA+TGG - chr5_4:66998997-66999016 Msa0865820:intron 45.0%
AAGCAGAATCGTTTGATCCC+TGG - chr5_4:66999208-66999227 Msa0865820:CDS 45.0%
TCATAGAGGTCATTGAGTCC+AGG + chr5_4:66999244-66999263 None:intergenic 45.0%
GAAGATGCCTGTAGTTGGAA+TGG - chr5_4:66998175-66998194 Msa0865820:three_prime_UTR 45.0%
TTTGATACTGCTGCTGCCTA+TGG - chr5_4:66998275-66998294 Msa0865820:CDS 45.0%
! AAGAGCTTGTTCTGAGCCAT+AGG + chr5_4:66998294-66998313 None:intergenic 45.0%
TATGGCTCAGAACAAGCTCT+TGG - chr5_4:66998293-66998312 Msa0865820:CDS 45.0%
TTTCCAGGCTGAGAACTAAG+TGG + chr5_4:66998595-66998614 None:intergenic 45.0%
!! GAAAGGTGTTTGGGAATCCA+TGG - chr5_4:66998660-66998679 Msa0865820:intron 45.0%
ATTGACTGCAGGAAGAACAG+TGG + chr5_4:66998770-66998789 None:intergenic 45.0%
! GCTTCTTTTGTTGCCATGCA+AGG + chr5_4:66998910-66998929 None:intergenic 45.0%
! AGAGAGTTTTGCAACGCACA+CGG - chr5_4:66998932-66998951 Msa0865820:intron 45.0%
TTTCCTCAACGGGGAAAATG+CGG + chr5_4:66998969-66998988 None:intergenic 45.0%
CAGGGGACCAAATGAAGTTA+TGG - chr5_4:66998997-66999016 Msa0865820:intron 45.0%
AAGCAGAATCGTTTGATCCC+TGG - chr5_4:66999208-66999227 Msa0865820:CDS 45.0%
TCATAGAGGTCATTGAGTCC+AGG + chr5_4:66999244-66999263 None:intergenic 45.0%
GCTGATCCCATTCCAACTAC+AGG + chr5_4:66998185-66998204 None:intergenic 50.0%
AGGTGTTTGGGAATCCATGG+AGG - chr5_4:66998663-66998682 Msa0865820:intron 50.0%
AGGTGGAGATGAACCTTGCA+TGG - chr5_4:66998894-66998913 Msa0865820:CDS 50.0%
! TAACCGCATTTTCCCCGTTG+AGG - chr5_4:66998963-66998982 Msa0865820:intron 50.0%
! GCATTTTCCCCGTTGAGGAA+AGG - chr5_4:66998968-66998987 Msa0865820:intron 50.0%
TGCTTGCACCTTTCCTCAAC+GGG + chr5_4:66998979-66998998 None:intergenic 50.0%
CTGCTTGCACCTTTCCTCAA+CGG + chr5_4:66998980-66998999 None:intergenic 50.0%
! GTTGAGGAAAGGTGCAAGCA+GGG - chr5_4:66998979-66998998 Msa0865820:intron 50.0%
! TTGAGGAAAGGTGCAAGCAG+GGG - chr5_4:66998980-66998999 Msa0865820:intron 50.0%
! TCATTGAGTCCAGGCTTGGT+TGG + chr5_4:66999235-66999254 None:intergenic 50.0%
GCTGATCCCATTCCAACTAC+AGG + chr5_4:66998185-66998204 None:intergenic 50.0%
AGGTGTTTGGGAATCCATGG+AGG - chr5_4:66998663-66998682 Msa0865820:intron 50.0%
AGGTGGAGATGAACCTTGCA+TGG - chr5_4:66998894-66998913 Msa0865820:CDS 50.0%
! TAACCGCATTTTCCCCGTTG+AGG - chr5_4:66998963-66998982 Msa0865820:intron 50.0%
! GCATTTTCCCCGTTGAGGAA+AGG - chr5_4:66998968-66998987 Msa0865820:intron 50.0%
TGCTTGCACCTTTCCTCAAC+GGG + chr5_4:66998979-66998998 None:intergenic 50.0%
CTGCTTGCACCTTTCCTCAA+CGG + chr5_4:66998980-66998999 None:intergenic 50.0%
! GTTGAGGAAAGGTGCAAGCA+GGG - chr5_4:66998979-66998998 Msa0865820:intron 50.0%
! TTGAGGAAAGGTGCAAGCAG+GGG - chr5_4:66998980-66998999 Msa0865820:intron 50.0%
! TCATTGAGTCCAGGCTTGGT+TGG + chr5_4:66999235-66999254 None:intergenic 50.0%
! TGGCCACTTAGTTCTCAGCC+TGG - chr5_4:66998589-66998608 Msa0865820:intron 55.0%
GCTTGCACCTTTCCTCAACG+GGG + chr5_4:66998978-66998997 None:intergenic 55.0%
! CGTTGAGGAAAGGTGCAAGC+AGG - chr5_4:66998978-66998997 Msa0865820:intron 55.0%
GAGGTCATTGAGTCCAGGCT+TGG + chr5_4:66999239-66999258 None:intergenic 55.0%
! TGGCCACTTAGTTCTCAGCC+TGG - chr5_4:66998589-66998608 Msa0865820:intron 55.0%
GCTTGCACCTTTCCTCAACG+GGG + chr5_4:66998978-66998997 None:intergenic 55.0%
! CGTTGAGGAAAGGTGCAAGC+AGG - chr5_4:66998978-66998997 Msa0865820:intron 55.0%
GAGGTCATTGAGTCCAGGCT+TGG + chr5_4:66999239-66999258 None:intergenic 55.0%
ATCCCTGGACCAACCAAGCC+TGG - chr5_4:66999223-66999242 Msa0865820:CDS 60.0%
! GTCCAGGCTTGGTTGGTCCA+GGG + chr5_4:66999228-66999247 None:intergenic 60.0%
! AGTCCAGGCTTGGTTGGTCC+AGG + chr5_4:66999229-66999248 None:intergenic 60.0%
ATCCCTGGACCAACCAAGCC+TGG - chr5_4:66999223-66999242 Msa0865820:CDS 60.0%
! GTCCAGGCTTGGTTGGTCCA+GGG + chr5_4:66999228-66999247 None:intergenic 60.0%
! AGTCCAGGCTTGGTTGGTCC+AGG + chr5_4:66999229-66999248 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 66998048 66999434 66998048 ID=Msa0865820;Name=Msa0865820
chr5_4 mRNA 66998048 66999434 66998048 ID=Msa0865820-mRNA-1;Parent=Msa0865820;Name=Msa0865820-mRNA-1;_AED=0.26;_eAED=0.26;_QI=74|1|1|1|1|1|3|164|312
chr5_4 exon 66998048 66998586 66998048 ID=Msa0865820-mRNA-1:exon:21122;Parent=Msa0865820-mRNA-1
chr5_4 exon 66998690 66998933 66998690 ID=Msa0865820-mRNA-1:exon:21121;Parent=Msa0865820-mRNA-1
chr5_4 exon 66999041 66999434 66999041 ID=Msa0865820-mRNA-1:exon:21120;Parent=Msa0865820-mRNA-1
chr5_4 five_prime_UTR 66999361 66999434 66999361 ID=Msa0865820-mRNA-1:five_prime_utr;Parent=Msa0865820-mRNA-1
chr5_4 CDS 66999041 66999360 66999041 ID=Msa0865820-mRNA-1:cds;Parent=Msa0865820-mRNA-1
chr5_4 CDS 66998690 66998933 66998690 ID=Msa0865820-mRNA-1:cds;Parent=Msa0865820-mRNA-1
chr5_4 CDS 66998212 66998586 66998212 ID=Msa0865820-mRNA-1:cds;Parent=Msa0865820-mRNA-1
chr5_4 three_prime_UTR 66998048 66998211 66998048 ID=Msa0865820-mRNA-1:three_prime_utr;Parent=Msa0865820-mRNA-1
Gene Sequence

>Msa0865820

ATGGGTAGTGTTGAAATCCCAACAAAGGTTCTTACAAACACATCTAGTCAATTGAAGATGCCTGTAGTTGGAATGGGATCAGCCCCTGACTTCACATGTAAGAAAGACACAAAAGATGCAATCATTGAAGCCATCAAACAAGGTTATAGACACTTTGATACTGCTGCTGCCTATGGCTCAGAACAAGCTCTTGGTGAAGCTTTGAAAGAGGCAATTGAACTTGGTCTTGTCACTAGAGATGACCTTTTTGTTACTTCTAAACTTTGGGTTACTGAAAACCATCCTCATCTTGTTATTCCTGCTCTTCAAAAATCTCTCAAGACTCTTCAATTGGACTATTTGGACTTGTATTTGATTCATTGGCCACTTAGTTCTCAGCCTGGAAAGTTTACATTTCCAATTGATGTGGCAGATCTCTTACCATTTGATGTGAAAGGTGTTTGGGAATCCATGGAGGAAAGCTTGAAACTTGGACTCACTAAAGCTATTGGAGTTAGTAACTTCTCTGTCAAGAAACTTGAAAATCTTCTCTCTGTCGCCACTGTTCTTCCTGCAGTCAATCAAGTGGAGATGAACCTTGCATGGCAACAAAAGAAGCTTAGAGAGTTTTGCAACGCACACGGAATAGTGTTAACCGCATTTTCCCCGTTGAGGAAAGGTGCAAGCAGGGGACCAAATGAAGTTATGGAGAATGATATGCTTAAAGAGATTGCAGATGCACATGGAAAGTCTGTTGCACAAATTTCTCTAAGATGGCTATATGAACAAGGAGTCACTTTTGTTCCCAAGAGCTATGATAAGGAAAGAATGAACCAAAATTTGCGTATCTTTGATTGGTCATTGACAAAAGAAGATCATGAGAAAATTGATCAAATTAAGCAGAATCGTTTGATCCCTGGACCAACCAAGCCTGGACTCAATGACCTCTATGATGACTAA

Protein sequence

>Msa0865820

MGSVEIPTKVLTNTSSQLKMPVVGMGSAPDFTCKKDTKDAIIEAIKQGYRHFDTAAAYGSEQALGEALKEAIELGLVTRDDLFVTSKLWVTENHPHLVIPALQKSLKTLQLDYLDLYLIHWPLSSQPGKFTFPIDVADLLPFDVKGVWESMEESLKLGLTKAIGVSNFSVKKLENLLSVATVLPAVNQVEMNLAWQQKKLREFCNAHGIVLTAFSPLRKGASRGPNEVMENDMLKEIADAHGKSVAQISLRWLYEQGVTFVPKSYDKERMNQNLRIFDWSLTKEDHEKIDQIKQNRLIPGPTKPGLNDLYDD*