AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0242790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0242790 MtrunA17_Chr2g0295141 95.541 157 7 0 1 157 1 157 2.21e-106 300
Msa0242790 MtrunA17_Chr2g0295091 94.268 157 9 0 1 157 1 157 7.09e-105 296
Msa0242790 MtrunA17_Chr2g0295104 92.994 157 11 0 1 157 1 157 6.87e-104 294
Msa0242790 MtrunA17_Chr2g0295124 89.172 157 17 0 1 157 1 157 2.36e-99 282
Msa0242790 MtrunA17_Chr6g0462311 64.968 157 55 0 1 157 1 157 1.83e-69 207
Msa0242790 MtrunA17_Chr4g0067951 64.968 157 55 0 1 157 1 157 5.29e-69 206
Msa0242790 MtrunA17_Chr2g0295021 63.057 157 58 0 1 157 1 157 6.77e-67 200
Msa0242790 MtrunA17_Chr2g0295001 63.057 157 58 0 1 157 1 157 6.77e-67 200
Msa0242790 MtrunA17_Chr2g0295051 61.146 157 61 0 1 157 1 157 5.00e-65 196
Msa0242790 MtrunA17_Chr2g0295064 61.146 157 61 0 1 157 68 224 7.38e-64 195
Msa0242790 MtrunA17_Chr6g0462291 63.571 140 51 0 1 140 1 140 4.36e-59 181
Msa0242790 MtrunA17_Chr2g0295041 55.414 157 70 0 1 157 1 157 1.43e-58 179
Msa0242790 MtrunA17_Chr2g0295081 45.860 157 85 0 1 157 1 157 2.06e-46 148
Msa0242790 MtrunA17_Chr4g0067921 42.236 161 86 5 1 157 1 158 6.33e-32 112
Msa0242790 MtrunA17_Chr2g0295211 32.051 156 105 1 1 155 1 156 3.74e-30 107
Msa0242790 MtrunA17_Chr4g0067841 33.121 157 104 1 1 156 1 157 9.28e-30 106
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 52 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGTATACTTGGTTTAATTT+TGG 0.204951 2_2:-19216742 Msa0242790:three_prime_UTR
AGACATGGATAACTTCTTAA+TGG 0.262600 2_2:+19217595 None:intergenic
AAATCTAAGTGATGATGTTT+AGG 0.300222 2_2:-19216581 Msa0242790:three_prime_UTR
AATAATTGAAGTTTAAGATA+TGG 0.309766 2_2:-19216699 Msa0242790:three_prime_UTR
GATAACTTCTTAATGGTTCC+TGG 0.335652 2_2:+19217602 None:intergenic
TACAGCTTGGTAGGAGGAAC+AGG 0.341343 2_2:-19216974 Msa0242790:CDS
TTCAACAATTTCAACACTTT+GGG 0.350751 2_2:+19217637 None:intergenic
CTTCAACAATTTCAACACTT+TGG 0.364915 2_2:+19217636 None:intergenic
GAAACTAAGGCCAGAGGAAC+TGG 0.366866 2_2:-19216818 Msa0242790:CDS
TGGGCAGCAGAAATCACCTT+TGG 0.387864 2_2:+19217656 None:intergenic
AGAGCTTTGTAGAGTTTAGC+TGG 0.394931 2_2:+19217704 None:intergenic
TGCAGTAGATGAGGCAAACT+TGG 0.396721 2_2:-19217005 Msa0242790:CDS
GTTGAAATTGTTGAAGGAAA+TGG 0.402462 2_2:-19217629 Msa0242790:CDS
TTATCTTGATATATATATCA+TGG 0.417043 2_2:-19217768 Msa0242790:exon
CTTGATAAGTCCAGTTCCTC+TGG 0.419380 2_2:+19216808 None:intergenic
AGATAGAGCTGCATCACCTT+TGG 0.442558 2_2:+19216856 None:intergenic
GGGCAGCAGAAATCACCTTT+GGG 0.449440 2_2:+19217657 None:intergenic
TTACTAAGTAAAAGTATACT+TGG 0.457767 2_2:-19216753 Msa0242790:exon
AAAATTGTGGCTGGCTCTGA+TGG 0.498760 2_2:-19216914 Msa0242790:CDS
TAATTTGTGTAGCACAAAGT+TGG 0.501990 2_2:+19217030 None:intergenic
CAAAGTGTTGAAATTGTTGA+AGG 0.502542 2_2:-19217635 Msa0242790:CDS
CAGAGGAACTGGACTTATCA+AGG 0.507213 2_2:-19216807 Msa0242790:CDS
TATCTTGATATATATATCAT+GGG 0.511953 2_2:-19217767 Msa0242790:exon
GGACTTATCAAGGCCATTGA+GGG 0.514208 2_2:-19216797 Msa0242790:CDS
GGATACAACTACAGCTTGGT+AGG 0.525235 2_2:-19216983 Msa0242790:CDS
CTCTGGCCTTAGTTTCATCA+CGG 0.532674 2_2:+19216825 None:intergenic
TGCAGTCCGTGATGAAACTA+AGG 0.533307 2_2:-19216831 Msa0242790:CDS
TGCCACGACGTAGCCCTCAA+TGG 0.549026 2_2:+19216784 None:intergenic
TTTGACTGTAATCTTAACAA+TGG 0.571145 2_2:+19216886 None:intergenic
TGGACTTATCAAGGCCATTG+AGG 0.572485 2_2:-19216798 Msa0242790:CDS
GTTGAAGGAAATGGAGGACC+AGG 0.585895 2_2:-19217620 Msa0242790:CDS
CAAATTAGATGCAGTAGATG+AGG 0.587202 2_2:-19217014 Msa0242790:CDS
ATTGTGGCTGGCTCTGATGG+TGG 0.588345 2_2:-19216911 Msa0242790:CDS
ATTTATTGAAGAAATACAGA+TGG 0.594988 2_2:+19216551 None:intergenic
GCAGTAGATGAGGCAAACTT+GGG 0.598362 2_2:-19217004 Msa0242790:CDS
GTAGAGTTTAGCTGGAGCCA+CGG 0.602676 2_2:+19217712 None:intergenic
TGCTGATGAAATCGTCCCAA+AGG 0.606260 2_2:-19217672 Msa0242790:CDS
CTTGGTAGGAGGAACAGGGT+TGG 0.609437 2_2:-19216969 Msa0242790:CDS
ATATGCAAGAAGAAAATGAA+AGG 0.609467 2_2:+19217800 None:intergenic
GTTTGATGTTGAGATAGTGT+CGG 0.613499 2_2:-19216649 Msa0242790:three_prime_UTR
CTTGGGATACAACTACAGCT+TGG 0.614144 2_2:-19216987 Msa0242790:CDS
CTAGTATATAACTTGTGATG+CGG 0.618776 2_2:+19217845 None:intergenic
AAGAAGTTATCCATGTCTGA+AGG 0.619942 2_2:-19217590 Msa0242790:intron
GAAATTGTTGAAGGAAATGG+AGG 0.626795 2_2:-19217626 Msa0242790:CDS
TACAACTACAGCTTGGTAGG+AGG 0.632731 2_2:-19216980 Msa0242790:CDS
GGCCATTGAGGGCTACGTCG+TGG 0.646344 2_2:-19216786 Msa0242790:CDS
TCTTAAATTACCTTCAGACA+TGG 0.649758 2_2:+19217580 None:intergenic
ACAGTCAAATACCACACCAA+AGG 0.652327 2_2:-19216872 Msa0242790:CDS
GAGCTGCATCACCTTTGGTG+TGG 0.654393 2_2:+19216861 None:intergenic
CGTGATGAAACTAAGGCCAG+AGG 0.688505 2_2:-19216824 Msa0242790:CDS
ACAGCTTGGTAGGAGGAACA+GGG 0.710550 2_2:-19216973 Msa0242790:CDS
TGATGAACATGTATCAACCG+TGG 0.718349 2_2:-19217729 Msa0242790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATATAAATAAATTATAA+TGG - chr2_2:19217278-19217297 Msa0242790:intron 0.0%
!! ATTATATAAATAAATTATAA+TGG - chr2_2:19217278-19217297 Msa0242790:intron 0.0%
!!! AAATAAAAGTATAACATAAA+TGG + chr2_2:19217082-19217101 None:intergenic 10.0%
!!! AAATAAAAGTATAACATAAA+TGG + chr2_2:19217082-19217101 None:intergenic 10.0%
!! TTATCTTGATATATATATCA+TGG - chr2_2:19216583-19216602 Msa0242790:three_prime_UTR 15.0%
!! TATCTTGATATATATATCAT+GGG - chr2_2:19216584-19216603 Msa0242790:three_prime_UTR 15.0%
!!! TTTGTCAATTTTTAAGTAAA+AGG + chr2_2:19216917-19216936 None:intergenic 15.0%
!!! ATACTTTTACTTAGTAATTA+GGG + chr2_2:19217595-19217614 None:intergenic 15.0%
!!! TATACTTTTACTTAGTAATT+AGG + chr2_2:19217596-19217615 None:intergenic 15.0%
!!! AATAATTGAAGTTTAAGATA+TGG - chr2_2:19217652-19217671 Msa0242790:CDS 15.0%
!! TTATCTTGATATATATATCA+TGG - chr2_2:19216583-19216602 Msa0242790:three_prime_UTR 15.0%
!! TATCTTGATATATATATCAT+GGG - chr2_2:19216584-19216603 Msa0242790:three_prime_UTR 15.0%
!!! TTTGTCAATTTTTAAGTAAA+AGG + chr2_2:19216917-19216936 None:intergenic 15.0%
!!! ATACTTTTACTTAGTAATTA+GGG + chr2_2:19217595-19217614 None:intergenic 15.0%
!!! TATACTTTTACTTAGTAATT+AGG + chr2_2:19217596-19217615 None:intergenic 15.0%
!!! AATAATTGAAGTTTAAGATA+TGG - chr2_2:19217652-19217671 Msa0242790:CDS 15.0%
!!! GAATTTAACTTACTTTTCTT+TGG + chr2_2:19217007-19217026 None:intergenic 20.0%
!!! CACATGAATCATTTTTTTTA+AGG + chr2_2:19217178-19217197 None:intergenic 20.0%
!!! TTACTAAGTAAAAGTATACT+TGG - chr2_2:19217598-19217617 Msa0242790:CDS 20.0%
!!! AAGTATACTTGGTTTAATTT+TGG - chr2_2:19217609-19217628 Msa0242790:CDS 20.0%
!! ATTTATTGAAGAAATACAGA+TGG + chr2_2:19217803-19217822 None:intergenic 20.0%
!!! GAATTTAACTTACTTTTCTT+TGG + chr2_2:19217007-19217026 None:intergenic 20.0%
!!! CACATGAATCATTTTTTTTA+AGG + chr2_2:19217178-19217197 None:intergenic 20.0%
!!! TTACTAAGTAAAAGTATACT+TGG - chr2_2:19217598-19217617 Msa0242790:CDS 20.0%
!!! AAGTATACTTGGTTTAATTT+TGG - chr2_2:19217609-19217628 Msa0242790:CDS 20.0%
!! ATTTATTGAAGAAATACAGA+TGG + chr2_2:19217803-19217822 None:intergenic 20.0%
! ATATGCAAGAAGAAAATGAA+AGG + chr2_2:19216554-19216573 None:intergenic 25.0%
! TTCAACAATTTCAACACTTT+GGG + chr2_2:19216717-19216736 None:intergenic 25.0%
! AATAGAATCTTGAGAAATGA+AGG - chr2_2:19217106-19217125 Msa0242790:intron 25.0%
! ATAATTATTAGACATACTCC+TGG + chr2_2:19217152-19217171 None:intergenic 25.0%
!! AGGAGTATGTCTAATAATTA+TGG - chr2_2:19217151-19217170 Msa0242790:intron 25.0%
! TGAATTCGAAACAAAAATTG+TGG - chr2_2:19217424-19217443 Msa0242790:intron 25.0%
! TTTGACTGTAATCTTAACAA+TGG + chr2_2:19217468-19217487 None:intergenic 25.0%
!! AAATCTAAGTGATGATGTTT+AGG - chr2_2:19217770-19217789 Msa0242790:exon 25.0%
! ATATGCAAGAAGAAAATGAA+AGG + chr2_2:19216554-19216573 None:intergenic 25.0%
! TTCAACAATTTCAACACTTT+GGG + chr2_2:19216717-19216736 None:intergenic 25.0%
! AATAGAATCTTGAGAAATGA+AGG - chr2_2:19217106-19217125 Msa0242790:intron 25.0%
! ATAATTATTAGACATACTCC+TGG + chr2_2:19217152-19217171 None:intergenic 25.0%
!! AGGAGTATGTCTAATAATTA+TGG - chr2_2:19217151-19217170 Msa0242790:intron 25.0%
! TGAATTCGAAACAAAAATTG+TGG - chr2_2:19217424-19217443 Msa0242790:intron 25.0%
! TTTGACTGTAATCTTAACAA+TGG + chr2_2:19217468-19217487 None:intergenic 25.0%
!! AAATCTAAGTGATGATGTTT+AGG - chr2_2:19217770-19217789 Msa0242790:exon 25.0%
! CTAGTATATAACTTGTGATG+CGG + chr2_2:19216509-19216528 None:intergenic 30.0%
CTTCAACAATTTCAACACTT+TGG + chr2_2:19216718-19216737 None:intergenic 30.0%
!! CAAAGTGTTGAAATTGTTGA+AGG - chr2_2:19216716-19216735 Msa0242790:three_prime_UTR 30.0%
GTTGAAATTGTTGAAGGAAA+TGG - chr2_2:19216722-19216741 Msa0242790:three_prime_UTR 30.0%
AGACATGGATAACTTCTTAA+TGG + chr2_2:19216759-19216778 None:intergenic 30.0%
TCTTAAATTACCTTCAGACA+TGG + chr2_2:19216774-19216793 None:intergenic 30.0%
!! TGTAAAATTGTTTTACACCG+AGG - chr2_2:19216849-19216868 Msa0242790:CDS 30.0%
TATAATGGTTGTATTGCAGA+TGG - chr2_2:19217293-19217312 Msa0242790:intron 30.0%
! TAATTTGTGTAGCACAAAGT+TGG + chr2_2:19217324-19217343 None:intergenic 30.0%
!! TGTTTTGGATGAATTTGGTT+GGG - chr2_2:19217735-19217754 Msa0242790:CDS 30.0%
! CTAGTATATAACTTGTGATG+CGG + chr2_2:19216509-19216528 None:intergenic 30.0%
CTTCAACAATTTCAACACTT+TGG + chr2_2:19216718-19216737 None:intergenic 30.0%
!! CAAAGTGTTGAAATTGTTGA+AGG - chr2_2:19216716-19216735 Msa0242790:three_prime_UTR 30.0%
GTTGAAATTGTTGAAGGAAA+TGG - chr2_2:19216722-19216741 Msa0242790:three_prime_UTR 30.0%
AGACATGGATAACTTCTTAA+TGG + chr2_2:19216759-19216778 None:intergenic 30.0%
TCTTAAATTACCTTCAGACA+TGG + chr2_2:19216774-19216793 None:intergenic 30.0%
!! TGTAAAATTGTTTTACACCG+AGG - chr2_2:19216849-19216868 Msa0242790:CDS 30.0%
TATAATGGTTGTATTGCAGA+TGG - chr2_2:19217293-19217312 Msa0242790:intron 30.0%
! TAATTTGTGTAGCACAAAGT+TGG + chr2_2:19217324-19217343 None:intergenic 30.0%
!! TGTTTTGGATGAATTTGGTT+GGG - chr2_2:19217735-19217754 Msa0242790:CDS 30.0%
GAAATTGTTGAAGGAAATGG+AGG - chr2_2:19216725-19216744 Msa0242790:three_prime_UTR 35.0%
GATAACTTCTTAATGGTTCC+TGG + chr2_2:19216752-19216771 None:intergenic 35.0%
AAGAAGTTATCCATGTCTGA+AGG - chr2_2:19216761-19216780 Msa0242790:exon 35.0%
! TACACAATTCTTTGTTGTGC+TGG + chr2_2:19216890-19216909 None:intergenic 35.0%
ATAATACATAAGCTCGTTCC+AGG - chr2_2:19217131-19217150 Msa0242790:intron 35.0%
CAAATTAGATGCAGTAGATG+AGG - chr2_2:19217337-19217356 Msa0242790:intron 35.0%
TTCGAAACAAAAATTGTGGC+TGG - chr2_2:19217428-19217447 Msa0242790:intron 35.0%
GTTTGATGTTGAGATAGTGT+CGG - chr2_2:19217702-19217721 Msa0242790:CDS 35.0%
!! AGTGGTGTTTTGGATGAATT+TGG - chr2_2:19217730-19217749 Msa0242790:CDS 35.0%
!! GTGTTTTGGATGAATTTGGT+TGG - chr2_2:19217734-19217753 Msa0242790:CDS 35.0%
GAAATTGTTGAAGGAAATGG+AGG - chr2_2:19216725-19216744 Msa0242790:three_prime_UTR 35.0%
GATAACTTCTTAATGGTTCC+TGG + chr2_2:19216752-19216771 None:intergenic 35.0%
AAGAAGTTATCCATGTCTGA+AGG - chr2_2:19216761-19216780 Msa0242790:exon 35.0%
! TACACAATTCTTTGTTGTGC+TGG + chr2_2:19216890-19216909 None:intergenic 35.0%
ATAATACATAAGCTCGTTCC+AGG - chr2_2:19217131-19217150 Msa0242790:intron 35.0%
CAAATTAGATGCAGTAGATG+AGG - chr2_2:19217337-19217356 Msa0242790:intron 35.0%
TTCGAAACAAAAATTGTGGC+TGG - chr2_2:19217428-19217447 Msa0242790:intron 35.0%
GTTTGATGTTGAGATAGTGT+CGG - chr2_2:19217702-19217721 Msa0242790:CDS 35.0%
!! AGTGGTGTTTTGGATGAATT+TGG - chr2_2:19217730-19217749 Msa0242790:CDS 35.0%
!! GTGTTTTGGATGAATTTGGT+TGG - chr2_2:19217734-19217753 Msa0242790:CDS 35.0%
TGATGAACATGTATCAACCG+TGG - chr2_2:19216622-19216641 Msa0242790:three_prime_UTR 40.0%
! AGAGCTTTGTAGAGTTTAGC+TGG + chr2_2:19216650-19216669 None:intergenic 40.0%
CGTGACATATTGAAGAGTTG+TGG - chr2_2:19216942-19216961 Msa0242790:CDS 40.0%
ACAGTCAAATACCACACCAA+AGG - chr2_2:19217479-19217498 Msa0242790:intron 40.0%
!!! ATTTTGGTTGTGTCGTGTCA+TGG - chr2_2:19217625-19217644 Msa0242790:CDS 40.0%
!! TTTTGGTTGTGTCGTGTCAT+GGG - chr2_2:19217626-19217645 Msa0242790:CDS 40.0%
TGATGAACATGTATCAACCG+TGG - chr2_2:19216622-19216641 Msa0242790:three_prime_UTR 40.0%
! AGAGCTTTGTAGAGTTTAGC+TGG + chr2_2:19216650-19216669 None:intergenic 40.0%
CGTGACATATTGAAGAGTTG+TGG - chr2_2:19216942-19216961 Msa0242790:CDS 40.0%
ACAGTCAAATACCACACCAA+AGG - chr2_2:19217479-19217498 Msa0242790:intron 40.0%
!!! ATTTTGGTTGTGTCGTGTCA+TGG - chr2_2:19217625-19217644 Msa0242790:CDS 40.0%
!! TTTTGGTTGTGTCGTGTCAT+GGG - chr2_2:19217626-19217645 Msa0242790:CDS 40.0%
TGCTGATGAAATCGTCCCAA+AGG - chr2_2:19216679-19216698 Msa0242790:three_prime_UTR 45.0%
!! GGCGAATTTTGATCGATCCT+CGG + chr2_2:19216869-19216888 None:intergenic 45.0%
TGCAGTAGATGAGGCAAACT+TGG - chr2_2:19217346-19217365 Msa0242790:intron 45.0%
GCAGTAGATGAGGCAAACTT+GGG - chr2_2:19217347-19217366 Msa0242790:intron 45.0%
CTTGGGATACAACTACAGCT+TGG - chr2_2:19217364-19217383 Msa0242790:intron 45.0%
GGATACAACTACAGCTTGGT+AGG - chr2_2:19217368-19217387 Msa0242790:intron 45.0%
TACAACTACAGCTTGGTAGG+AGG - chr2_2:19217371-19217390 Msa0242790:intron 45.0%
!! AAAATTGTGGCTGGCTCTGA+TGG - chr2_2:19217437-19217456 Msa0242790:intron 45.0%
AGATAGAGCTGCATCACCTT+TGG + chr2_2:19217498-19217517 None:intergenic 45.0%
TGCAGTCCGTGATGAAACTA+AGG - chr2_2:19217520-19217539 Msa0242790:intron 45.0%
!! CTCTGGCCTTAGTTTCATCA+CGG + chr2_2:19217529-19217548 None:intergenic 45.0%
CTTGATAAGTCCAGTTCCTC+TGG + chr2_2:19217546-19217565 None:intergenic 45.0%
CAGAGGAACTGGACTTATCA+AGG - chr2_2:19217544-19217563 Msa0242790:intron 45.0%
TGGACTTATCAAGGCCATTG+AGG - chr2_2:19217553-19217572 Msa0242790:intron 45.0%
GGACTTATCAAGGCCATTGA+GGG - chr2_2:19217554-19217573 Msa0242790:intron 45.0%
!!! GAGATAGTGTCGGTTTTGAG+TGG - chr2_2:19217712-19217731 Msa0242790:CDS 45.0%
!!! GTCGGTTTTGAGTGGTGTTT+TGG - chr2_2:19217720-19217739 Msa0242790:CDS 45.0%
TGCTGATGAAATCGTCCCAA+AGG - chr2_2:19216679-19216698 Msa0242790:three_prime_UTR 45.0%
!! GGCGAATTTTGATCGATCCT+CGG + chr2_2:19216869-19216888 None:intergenic 45.0%
TGCAGTAGATGAGGCAAACT+TGG - chr2_2:19217346-19217365 Msa0242790:intron 45.0%
GCAGTAGATGAGGCAAACTT+GGG - chr2_2:19217347-19217366 Msa0242790:intron 45.0%
CTTGGGATACAACTACAGCT+TGG - chr2_2:19217364-19217383 Msa0242790:intron 45.0%
GGATACAACTACAGCTTGGT+AGG - chr2_2:19217368-19217387 Msa0242790:intron 45.0%
TACAACTACAGCTTGGTAGG+AGG - chr2_2:19217371-19217390 Msa0242790:intron 45.0%
!! AAAATTGTGGCTGGCTCTGA+TGG - chr2_2:19217437-19217456 Msa0242790:intron 45.0%
AGATAGAGCTGCATCACCTT+TGG + chr2_2:19217498-19217517 None:intergenic 45.0%
TGCAGTCCGTGATGAAACTA+AGG - chr2_2:19217520-19217539 Msa0242790:intron 45.0%
!! CTCTGGCCTTAGTTTCATCA+CGG + chr2_2:19217529-19217548 None:intergenic 45.0%
CTTGATAAGTCCAGTTCCTC+TGG + chr2_2:19217546-19217565 None:intergenic 45.0%
CAGAGGAACTGGACTTATCA+AGG - chr2_2:19217544-19217563 Msa0242790:intron 45.0%
TGGACTTATCAAGGCCATTG+AGG - chr2_2:19217553-19217572 Msa0242790:intron 45.0%
GGACTTATCAAGGCCATTGA+GGG - chr2_2:19217554-19217573 Msa0242790:intron 45.0%
!!! GAGATAGTGTCGGTTTTGAG+TGG - chr2_2:19217712-19217731 Msa0242790:CDS 45.0%
!!! GTCGGTTTTGAGTGGTGTTT+TGG - chr2_2:19217720-19217739 Msa0242790:CDS 45.0%
GTAGAGTTTAGCTGGAGCCA+CGG + chr2_2:19216642-19216661 None:intergenic 50.0%
GGGCAGCAGAAATCACCTTT+GGG + chr2_2:19216697-19216716 None:intergenic 50.0%
TGGGCAGCAGAAATCACCTT+TGG + chr2_2:19216698-19216717 None:intergenic 50.0%
GTTGAAGGAAATGGAGGACC+AGG - chr2_2:19216731-19216750 Msa0242790:three_prime_UTR 50.0%
TACAGCTTGGTAGGAGGAAC+AGG - chr2_2:19217377-19217396 Msa0242790:intron 50.0%
ACAGCTTGGTAGGAGGAACA+GGG - chr2_2:19217378-19217397 Msa0242790:intron 50.0%
CGTGATGAAACTAAGGCCAG+AGG - chr2_2:19217527-19217546 Msa0242790:intron 50.0%
GAAACTAAGGCCAGAGGAAC+TGG - chr2_2:19217533-19217552 Msa0242790:intron 50.0%
GTAGAGTTTAGCTGGAGCCA+CGG + chr2_2:19216642-19216661 None:intergenic 50.0%
GGGCAGCAGAAATCACCTTT+GGG + chr2_2:19216697-19216716 None:intergenic 50.0%
TGGGCAGCAGAAATCACCTT+TGG + chr2_2:19216698-19216717 None:intergenic 50.0%
GTTGAAGGAAATGGAGGACC+AGG - chr2_2:19216731-19216750 Msa0242790:three_prime_UTR 50.0%
TACAGCTTGGTAGGAGGAAC+AGG - chr2_2:19217377-19217396 Msa0242790:intron 50.0%
ACAGCTTGGTAGGAGGAACA+GGG - chr2_2:19217378-19217397 Msa0242790:intron 50.0%
CGTGATGAAACTAAGGCCAG+AGG - chr2_2:19217527-19217546 Msa0242790:intron 50.0%
GAAACTAAGGCCAGAGGAAC+TGG - chr2_2:19217533-19217552 Msa0242790:intron 50.0%
CTTGGTAGGAGGAACAGGGT+TGG - chr2_2:19217382-19217401 Msa0242790:intron 55.0%
!! ATTGTGGCTGGCTCTGATGG+TGG - chr2_2:19217440-19217459 Msa0242790:intron 55.0%
GAGCTGCATCACCTTTGGTG+TGG + chr2_2:19217493-19217512 None:intergenic 55.0%
CTTGGTAGGAGGAACAGGGT+TGG - chr2_2:19217382-19217401 Msa0242790:intron 55.0%
!! ATTGTGGCTGGCTCTGATGG+TGG - chr2_2:19217440-19217459 Msa0242790:intron 55.0%
GAGCTGCATCACCTTTGGTG+TGG + chr2_2:19217493-19217512 None:intergenic 55.0%
TGCCACGACGTAGCCCTCAA+TGG + chr2_2:19217570-19217589 None:intergenic 60.0%
TGCCACGACGTAGCCCTCAA+TGG + chr2_2:19217570-19217589 None:intergenic 60.0%
GGCCATTGAGGGCTACGTCG+TGG - chr2_2:19217565-19217584 Msa0242790:intron 65.0%
GGCCATTGAGGGCTACGTCG+TGG - chr2_2:19217565-19217584 Msa0242790:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 19216504 19217869 19216504 ID=Msa0242790;Name=Msa0242790
chr2_2 mRNA 19216504 19217869 19216504 ID=Msa0242790-mRNA-1;Parent=Msa0242790;Name=Msa0242790-mRNA-1;_AED=0.06;_eAED=0.06;_QI=98|1|1|1|1|1|2|265|157
chr2_2 exon 19216504 19217061 19216504 ID=Msa0242790-mRNA-1:exon:7803;Parent=Msa0242790-mRNA-1
chr2_2 exon 19217591 19217869 19217591 ID=Msa0242790-mRNA-1:exon:7802;Parent=Msa0242790-mRNA-1
chr2_2 five_prime_UTR 19217772 19217869 19217772 ID=Msa0242790-mRNA-1:five_prime_utr;Parent=Msa0242790-mRNA-1
chr2_2 CDS 19217591 19217771 19217591 ID=Msa0242790-mRNA-1:cds;Parent=Msa0242790-mRNA-1
chr2_2 CDS 19216769 19217061 19216769 ID=Msa0242790-mRNA-1:cds;Parent=Msa0242790-mRNA-1
chr2_2 three_prime_UTR 19216504 19216768 19216504 ID=Msa0242790-mRNA-1:three_prime_utr;Parent=Msa0242790-mRNA-1
Gene Sequence

>Msa0242790

ATGGGTGTTTTTACTTTCAATGATGAACATGTATCAACCGTGGCTCCAGCTAAACTCTACAAAGCTCTTGCAAAAGATGCTGATGAAATCGTCCCAAAGGTGATTTCTGCTGCCCAAAGTGTTGAAATTGTTGAAGGAAATGGAGGACCAGGAACCATTAAGAAGTTATCCATGTCTGAAGATGGCAAAACCAACTTTGTGCTACACAAATTAGATGCAGTAGATGAGGCAAACTTGGGATACAACTACAGCTTGGTAGGAGGAACAGGGTTGGATGAAAGTTTAGAGAAAGTTGAATTCGAAACAAAAATTGTGGCTGGCTCTGATGGTGGATCCATTGTTAAGATTACAGTCAAATACCACACCAAAGGTGATGCAGCTCTATCTGATGCAGTCCGTGATGAAACTAAGGCCAGAGGAACTGGACTTATCAAGGCCATTGAGGGCTACGTCGTGGCAAACCCTAATTACTAA
Protein sequence

>Msa0242790

MGVFTFNDEHVSTVAPAKLYKALAKDADEIVPKVISAAQSVEIVEGNGGPGTIKKLSMSEDGKTNFVLHKLDAVDEANLGYNYSLVGGTGLDESLEKVEFETKIVAGSDGGSIVKITVKYHTKGDAALSDAVRDETKARGTGLIKAIEGYVVANPNY*