AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1080130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1080130 MtrunA17_Chr7g0265791 89.286 336 3 3 1 306 168 500 0.0 593
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1080130 AT5G03700.1 45.045 333 129 11 1 302 171 480 9.46e-82 255

Find 89 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAATCTCAAAGGGTATTAT+TGG 0.229085 7_2:-79425203 Msa1080130:CDS
GGTGCTTACTCTTGCATAAA+TGG 0.242269 7_2:+79425335 None:intergenic
TGGAATTGTGGTTTCTGTTT+TGG 0.285828 7_2:-79424691 Msa1080130:CDS
AATCTCTACTCTTTACGTTT+AGG 0.299181 7_2:-79425489 Msa1080130:CDS
ACGTAAAGAGTAGAGATTAT+TGG 0.315834 7_2:+79425494 None:intergenic
AGAAACTTCGTCGTTTCTTT+TGG 0.327593 7_2:-79425244 Msa1080130:CDS
AATAGGGTTGGGGTTATTGT+TGG 0.329282 7_2:-79424711 Msa1080130:CDS
TCGGATCCAAGATTCCTATA+CGG 0.334849 7_2:+79424570 None:intergenic
GAAAATCACGACAAAGAAAA+AGG 0.336915 7_2:-79425444 Msa1080130:CDS
CCATACGAACCACATGGATT+TGG 0.349570 7_2:+79425120 None:intergenic
CAGCAGGTTTAGAACTTGTT+TGG 0.369084 7_2:+79425292 None:intergenic
GAAAGAGGAGGATGAGAATT+GGG 0.370412 7_2:-79424604 Msa1080130:CDS
TGGGGTTATTGTTGGAATTG+TGG 0.370640 7_2:-79424703 Msa1080130:CDS
ACGTTTAGGTGACACTTTCA+TGG 0.378138 7_2:-79425475 Msa1080130:CDS
GAATCTCAAAGGGTATTATT+GGG 0.385265 7_2:-79425202 Msa1080130:CDS
GGGCTTTGCCTGGCCCGTAT+AGG 0.385386 7_2:-79424584 Msa1080130:CDS
GTAAGCACCGAGGGTTATAT+TGG 0.386812 7_2:-79425321 Msa1080130:CDS
TAGGTTTGAACCGGGTGAAC+CGG 0.391695 7_2:-79425049 Msa1080130:CDS
TGAAAGAGGAGGATGAGAAT+TGG 0.393666 7_2:-79424605 Msa1080130:CDS
GATGAGAATTGGGCTTTGCC+TGG 0.395502 7_2:-79424594 Msa1080130:CDS
CCTGGCCCGTATAGGAATCT+TGG 0.400630 7_2:-79424576 Msa1080130:CDS
TTGGTTGGGATTGTTGTTGT+TGG 0.406997 7_2:-79424672 Msa1080130:CDS
CACGGAGAAGGAATAGGGTT+GGG 0.407268 7_2:-79424722 Msa1080130:CDS
ATAGGAACAATGTTAGGAAC+AGG 0.415563 7_2:-79424786 Msa1080130:intron
GCAAAATCTAAAATCATAGA+AGG 0.419839 7_2:-79425366 Msa1080130:CDS
TATCCAATAGGAACAATGTT+AGG 0.420533 7_2:-79424792 Msa1080130:intron
TAACAAAGCTAGGTTTGAAC+CGG 0.430362 7_2:-79425058 Msa1080130:CDS
TTGAATTTCTGAACATCAGC+AGG 0.432916 7_2:+79425276 None:intergenic
CACAAGTTTCGCTAATAGCT+TGG 0.440991 7_2:+79425148 None:intergenic
CGTTTAGGTGACACTTTCAT+GGG 0.443125 7_2:-79425474 Msa1080130:CDS
GTGCTTACTCTTGCATAAAT+GGG 0.460763 7_2:+79425336 None:intergenic
CTCGACGGATCTAAAACTTT+CGG 0.461250 7_2:+79424551 None:intergenic
CCAAATCCATGTGGTTCGTA+TGG 0.462161 7_2:-79425120 Msa1080130:CDS
GGGATTCAACAAAGTCTAGT+TGG 0.465277 7_2:-79425182 Msa1080130:CDS
AAGGTGCACGGAGAAGGAAT+AGG 0.470387 7_2:-79424728 Msa1080130:CDS
CGGATCCAAGATTCCTATAC+GGG 0.473474 7_2:+79424571 None:intergenic
TACAAGATTCTGAGAAAGGT+TGG 0.478101 7_2:-79424952 Msa1080130:CDS
CTTGTTTAGATAACAAAGCT+AGG 0.482136 7_2:-79425068 Msa1080130:CDS
AAGGTAGTTTGTTAACAAAA+CGG 0.484249 7_2:-79425425 Msa1080130:CDS
TAGTTACAAGATTCTGAGAA+AGG 0.492029 7_2:-79424956 Msa1080130:CDS
AGGTGCACGGAGAAGGAATA+GGG 0.499165 7_2:-79424727 Msa1080130:CDS
TTCGTATGGTTTGTGTACCC+CGG 0.508542 7_2:-79425106 Msa1080130:CDS
TGGTTAGGTTAGAACAAGAC+GGG 0.512333 7_2:-79425224 Msa1080130:CDS
GATGATGATGGTGATGGAGG+TGG 0.514144 7_2:-79425012 Msa1080130:CDS
GACTTGTGCAGTGGAGGGAT+TGG 0.523694 7_2:-79424988 Msa1080130:CDS
TCTAAAATCATAGAAGGTGA+TGG 0.528671 7_2:-79425360 Msa1080130:CDS
TTTAATGATGATGATGGTGA+TGG 0.529593 7_2:-79425018 Msa1080130:CDS
AGGTTTGAACCGGGTGAACC+GGG 0.529961 7_2:-79425048 Msa1080130:CDS
TGAGGAAAGGTGCACGGAGA+AGG 0.531685 7_2:-79424734 Msa1080130:CDS
AACAAGACGGGAATCTCAAA+GGG 0.531757 7_2:-79425212 Msa1080130:CDS
TCGTATGGTTTGTGTACCCC+GGG 0.537638 7_2:-79425105 Msa1080130:CDS
GAACAAGACGGGAATCTCAA+AGG 0.540237 7_2:-79425213 Msa1080130:CDS
GGTGGAGACTTGTGCAGTGG+AGG 0.550599 7_2:-79424994 Msa1080130:CDS
AAACACCCACCCGGTTCACC+CGG 0.551323 7_2:+79425039 None:intergenic
AGGAACAGGGGATGAGTCAA+AGG 0.556839 7_2:-79424772 Msa1080130:CDS
TCCTCTAGTAACTCTTTATG+CGG 0.558201 7_2:+79424919 None:intergenic
TATGGTTTGTGTACCCCGGG+TGG 0.569680 7_2:-79425102 Msa1080130:CDS
ATGGTTTGTGTACCCCGGGT+GGG 0.571622 7_2:-79425101 Msa1080130:CDS
GTTATCTTTAACAGAATGTG+AGG 0.575632 7_2:-79424887 Msa1080130:CDS
TCTAGTAACTCTTTATGCGG+TGG 0.582196 7_2:+79424922 None:intergenic
TTGGTTAGGTTAGAACAAGA+CGG 0.585405 7_2:-79425225 Msa1080130:CDS
TTGAACCGGGTGAACCGGGT+GGG 0.586209 7_2:-79425044 Msa1080130:CDS
GTGGAGACTTGTGCAGTGGA+GGG 0.586292 7_2:-79424993 Msa1080130:CDS
GTACATTCCAATATAACCCT+CGG 0.587317 7_2:+79425314 None:intergenic
AATGATGATGATGGTGATGG+AGG 0.587786 7_2:-79425015 Msa1080130:CDS
GCACGGAGAAGGAATAGGGT+TGG 0.594548 7_2:-79424723 Msa1080130:CDS
ACGGAGAAGGAATAGGGTTG+GGG 0.595008 7_2:-79424721 Msa1080130:CDS
CAAGAACAACTAGACCCACC+CGG 0.597425 7_2:+79425087 None:intergenic
ACAGGGGATGAGTCAAAGGT+GGG 0.600129 7_2:-79424768 Msa1080130:CDS
TTTGAACCGGGTGAACCGGG+TGG 0.602123 7_2:-79425045 Msa1080130:CDS
TTAAAGTGAGGAAAGGTGCA+CGG 0.603602 7_2:-79424740 Msa1080130:CDS
AACAGGGGATGAGTCAAAGG+TGG 0.611797 7_2:-79424769 Msa1080130:CDS
AAGAACAACTAGACCCACCC+GGG 0.614763 7_2:+79425088 None:intergenic
CACAAACCATACGAACCACA+TGG 0.615636 7_2:+79425114 None:intergenic
GATTCTGAGAAAGGTTGGAG+TGG 0.618823 7_2:-79424947 Msa1080130:CDS
TTGTGATATGTGTAGTGAGG+TGG 0.623058 7_2:-79424647 Msa1080130:CDS
CGCACTACTCGACATCTCGA+CGG 0.625373 7_2:+79424536 None:intergenic
AGGAACAATGTTAGGAACAG+GGG 0.629514 7_2:-79424784 Msa1080130:CDS
TATGCAAGAGTAAGCACCGA+GGG 0.634595 7_2:-79425330 Msa1080130:CDS
GTGTTGTGATATGTGTAGTG+AGG 0.634695 7_2:-79424650 Msa1080130:CDS
AACAAAGCTAGGTTTGAACC+GGG 0.646696 7_2:-79425057 Msa1080130:CDS
TAGGAACAATGTTAGGAACA+GGG 0.647964 7_2:-79424785 Msa1080130:CDS
TTATCTTTAACAGAATGTGA+GGG 0.662315 7_2:-79424886 Msa1080130:intron
ACCGCATAAAGAGTTACTAG+AGG 0.673293 7_2:-79424920 Msa1080130:CDS
GGAGGTGGAGACTTGTGCAG+TGG 0.693599 7_2:-79424997 Msa1080130:CDS
TCATCATTAAAACACCCACC+CGG 0.718915 7_2:+79425030 None:intergenic
TGTGAGCTTCCAAATCCATG+TGG 0.726162 7_2:-79425129 Msa1080130:CDS
AGAACAACTAGACCCACCCG+GGG 0.777454 7_2:+79425089 None:intergenic
TTATGCAAGAGTAAGCACCG+AGG 0.833555 7_2:-79425331 Msa1080130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACGGTTATTTTTGTTATAT+TGG - chr7_2:79424633-79424652 Msa1080130:CDS 20.0%
!! TGAGAAAAATTGTAAATGTT+GGG - chr7_2:79425181-79425200 Msa1080130:CDS 20.0%
!!! AACGGTTATTTTTGTTATAT+TGG - chr7_2:79424633-79424652 Msa1080130:CDS 20.0%
!! TGAGAAAAATTGTAAATGTT+GGG - chr7_2:79425181-79425200 Msa1080130:CDS 20.0%
!!! AAGGTAGTTTGTTAACAAAA+CGG - chr7_2:79424615-79424634 Msa1080130:CDS 25.0%
!! GCAAAATCTAAAATCATAGA+AGG - chr7_2:79424674-79424693 Msa1080130:CDS 25.0%
! TTATCTTTAACAGAATGTGA+GGG - chr7_2:79425154-79425173 Msa1080130:CDS 25.0%
! GTGAGAAAAATTGTAAATGT+TGG - chr7_2:79425180-79425199 Msa1080130:CDS 25.0%
! GAGAAAAATTGTAAATGTTG+GGG - chr7_2:79425182-79425201 Msa1080130:CDS 25.0%
!!! TATGTTTTGGATTATCCAAT+AGG - chr7_2:79425236-79425255 Msa1080130:CDS 25.0%
!!! AAGGTAGTTTGTTAACAAAA+CGG - chr7_2:79424615-79424634 Msa1080130:CDS 25.0%
!! GCAAAATCTAAAATCATAGA+AGG - chr7_2:79424674-79424693 Msa1080130:CDS 25.0%
! TTATCTTTAACAGAATGTGA+GGG - chr7_2:79425154-79425173 Msa1080130:CDS 25.0%
! GTGAGAAAAATTGTAAATGT+TGG - chr7_2:79425180-79425199 Msa1080130:CDS 25.0%
! GAGAAAAATTGTAAATGTTG+GGG - chr7_2:79425182-79425201 Msa1080130:CDS 25.0%
!!! TATGTTTTGGATTATCCAAT+AGG - chr7_2:79425236-79425255 Msa1080130:CDS 25.0%
ACGTAAAGAGTAGAGATTAT+TGG + chr7_2:79424549-79424568 None:intergenic 30.0%
AATCTCTACTCTTTACGTTT+AGG - chr7_2:79424551-79424570 Msa1080130:CDS 30.0%
GAAAATCACGACAAAGAAAA+AGG - chr7_2:79424596-79424615 Msa1080130:CDS 30.0%
! TCTAAAATCATAGAAGGTGA+TGG - chr7_2:79424680-79424699 Msa1080130:CDS 30.0%
!! GAATCTCAAAGGGTATTATT+GGG - chr7_2:79424838-79424857 Msa1080130:intron 30.0%
CTTGTTTAGATAACAAAGCT+AGG - chr7_2:79424972-79424991 Msa1080130:CDS 30.0%
!! TTTAATGATGATGATGGTGA+TGG - chr7_2:79425022-79425041 Msa1080130:CDS 30.0%
! TAGTTACAAGATTCTGAGAA+AGG - chr7_2:79425084-79425103 Msa1080130:CDS 30.0%
GTTATCTTTAACAGAATGTG+AGG - chr7_2:79425153-79425172 Msa1080130:CDS 30.0%
ATCCAAAACATAACAAAACC+CGG + chr7_2:79425228-79425247 None:intergenic 30.0%
TATCCAATAGGAACAATGTT+AGG - chr7_2:79425248-79425267 Msa1080130:CDS 30.0%
!!! GGTTATTTTAAAGTGAGGAA+AGG - chr7_2:79425293-79425312 Msa1080130:CDS 30.0%
ACGTAAAGAGTAGAGATTAT+TGG + chr7_2:79424549-79424568 None:intergenic 30.0%
AATCTCTACTCTTTACGTTT+AGG - chr7_2:79424551-79424570 Msa1080130:CDS 30.0%
GAAAATCACGACAAAGAAAA+AGG - chr7_2:79424596-79424615 Msa1080130:CDS 30.0%
! TCTAAAATCATAGAAGGTGA+TGG - chr7_2:79424680-79424699 Msa1080130:CDS 30.0%
!! GAATCTCAAAGGGTATTATT+GGG - chr7_2:79424838-79424857 Msa1080130:intron 30.0%
CTTGTTTAGATAACAAAGCT+AGG - chr7_2:79424972-79424991 Msa1080130:CDS 30.0%
!! TTTAATGATGATGATGGTGA+TGG - chr7_2:79425022-79425041 Msa1080130:CDS 30.0%
! TAGTTACAAGATTCTGAGAA+AGG - chr7_2:79425084-79425103 Msa1080130:CDS 30.0%
GTTATCTTTAACAGAATGTG+AGG - chr7_2:79425153-79425172 Msa1080130:CDS 30.0%
ATCCAAAACATAACAAAACC+CGG + chr7_2:79425228-79425247 None:intergenic 30.0%
TATCCAATAGGAACAATGTT+AGG - chr7_2:79425248-79425267 Msa1080130:CDS 30.0%
!!! GGTTATTTTAAAGTGAGGAA+AGG - chr7_2:79425293-79425312 Msa1080130:CDS 30.0%
GTGCTTACTCTTGCATAAAT+GGG + chr7_2:79424707-79424726 None:intergenic 35.0%
GTACATTCCAATATAACCCT+CGG + chr7_2:79424729-79424748 None:intergenic 35.0%
TTGAATTTCTGAACATCAGC+AGG + chr7_2:79424767-79424786 None:intergenic 35.0%
! AGAAACTTCGTCGTTTCTTT+TGG - chr7_2:79424796-79424815 Msa1080130:intron 35.0%
TTGGTTAGGTTAGAACAAGA+CGG - chr7_2:79424815-79424834 Msa1080130:intron 35.0%
!! GGAATCTCAAAGGGTATTAT+TGG - chr7_2:79424837-79424856 Msa1080130:intron 35.0%
TAACAAAGCTAGGTTTGAAC+CGG - chr7_2:79424982-79425001 Msa1080130:CDS 35.0%
!!! GGGTGTTTTAATGATGATGA+TGG - chr7_2:79425016-79425035 Msa1080130:CDS 35.0%
! TACAAGATTCTGAGAAAGGT+TGG - chr7_2:79425088-79425107 Msa1080130:CDS 35.0%
TCCTCTAGTAACTCTTTATG+CGG + chr7_2:79425124-79425143 None:intergenic 35.0%
GCGTTGTATAATAACCAAAC+CGG - chr7_2:79425206-79425225 Msa1080130:CDS 35.0%
CGTTGTATAATAACCAAACC+GGG - chr7_2:79425207-79425226 Msa1080130:CDS 35.0%
AAACATAACAAAACCCGGTT+TGG + chr7_2:79425223-79425242 None:intergenic 35.0%
!!! AACCGGGTTTTGTTATGTTT+TGG - chr7_2:79425223-79425242 Msa1080130:CDS 35.0%
GTTCCTAACATTGTTCCTAT+TGG + chr7_2:79425254-79425273 None:intergenic 35.0%
ATAGGAACAATGTTAGGAAC+AGG - chr7_2:79425254-79425273 Msa1080130:CDS 35.0%
TAGGAACAATGTTAGGAACA+GGG - chr7_2:79425255-79425274 Msa1080130:CDS 35.0%
!!! AGGTGGGTTATTTTAAAGTG+AGG - chr7_2:79425288-79425307 Msa1080130:CDS 35.0%
! TGGAATTGTGGTTTCTGTTT+TGG - chr7_2:79425349-79425368 Msa1080130:CDS 35.0%
!!! ATTGTGGTTTCTGTTTTGGT+TGG - chr7_2:79425353-79425372 Msa1080130:CDS 35.0%
!!! TTGTGGTTTCTGTTTTGGTT+GGG - chr7_2:79425354-79425373 Msa1080130:CDS 35.0%
TGAGGTGGAAAAAGAGAAAA+GGG - chr7_2:79425408-79425427 Msa1080130:CDS 35.0%
GTGCTTACTCTTGCATAAAT+GGG + chr7_2:79424707-79424726 None:intergenic 35.0%
GTACATTCCAATATAACCCT+CGG + chr7_2:79424729-79424748 None:intergenic 35.0%
TTGAATTTCTGAACATCAGC+AGG + chr7_2:79424767-79424786 None:intergenic 35.0%
! AGAAACTTCGTCGTTTCTTT+TGG - chr7_2:79424796-79424815 Msa1080130:intron 35.0%
TTGGTTAGGTTAGAACAAGA+CGG - chr7_2:79424815-79424834 Msa1080130:intron 35.0%
!! GGAATCTCAAAGGGTATTAT+TGG - chr7_2:79424837-79424856 Msa1080130:intron 35.0%
TAACAAAGCTAGGTTTGAAC+CGG - chr7_2:79424982-79425001 Msa1080130:CDS 35.0%
!!! GGGTGTTTTAATGATGATGA+TGG - chr7_2:79425016-79425035 Msa1080130:CDS 35.0%
! TACAAGATTCTGAGAAAGGT+TGG - chr7_2:79425088-79425107 Msa1080130:CDS 35.0%
TCCTCTAGTAACTCTTTATG+CGG + chr7_2:79425124-79425143 None:intergenic 35.0%
GCGTTGTATAATAACCAAAC+CGG - chr7_2:79425206-79425225 Msa1080130:CDS 35.0%
CGTTGTATAATAACCAAACC+GGG - chr7_2:79425207-79425226 Msa1080130:CDS 35.0%
AAACATAACAAAACCCGGTT+TGG + chr7_2:79425223-79425242 None:intergenic 35.0%
!!! AACCGGGTTTTGTTATGTTT+TGG - chr7_2:79425223-79425242 Msa1080130:CDS 35.0%
GTTCCTAACATTGTTCCTAT+TGG + chr7_2:79425254-79425273 None:intergenic 35.0%
ATAGGAACAATGTTAGGAAC+AGG - chr7_2:79425254-79425273 Msa1080130:CDS 35.0%
TAGGAACAATGTTAGGAACA+GGG - chr7_2:79425255-79425274 Msa1080130:CDS 35.0%
!!! AGGTGGGTTATTTTAAAGTG+AGG - chr7_2:79425288-79425307 Msa1080130:CDS 35.0%
! TGGAATTGTGGTTTCTGTTT+TGG - chr7_2:79425349-79425368 Msa1080130:CDS 35.0%
!!! ATTGTGGTTTCTGTTTTGGT+TGG - chr7_2:79425353-79425372 Msa1080130:CDS 35.0%
!!! TTGTGGTTTCTGTTTTGGTT+GGG - chr7_2:79425354-79425373 Msa1080130:CDS 35.0%
TGAGGTGGAAAAAGAGAAAA+GGG - chr7_2:79425408-79425427 Msa1080130:CDS 35.0%
ACGTTTAGGTGACACTTTCA+TGG - chr7_2:79424565-79424584 Msa1080130:CDS 40.0%
CGTTTAGGTGACACTTTCAT+GGG - chr7_2:79424566-79424585 Msa1080130:CDS 40.0%
GGTGCTTACTCTTGCATAAA+TGG + chr7_2:79424708-79424727 None:intergenic 40.0%
! CAGCAGGTTTAGAACTTGTT+TGG + chr7_2:79424751-79424770 None:intergenic 40.0%
!! CTTCGTCGTTTCTTTTGGTT+AGG - chr7_2:79424801-79424820 Msa1080130:intron 40.0%
TGGTTAGGTTAGAACAAGAC+GGG - chr7_2:79424816-79424835 Msa1080130:intron 40.0%
AACAAGACGGGAATCTCAAA+GGG - chr7_2:79424828-79424847 Msa1080130:intron 40.0%
GGGATTCAACAAAGTCTAGT+TGG - chr7_2:79424858-79424877 Msa1080130:intron 40.0%
CACAAGTTTCGCTAATAGCT+TGG + chr7_2:79424895-79424914 None:intergenic 40.0%
AACAAAGCTAGGTTTGAACC+GGG - chr7_2:79424983-79425002 Msa1080130:CDS 40.0%
TCATCATTAAAACACCCACC+CGG + chr7_2:79425013-79425032 None:intergenic 40.0%
!! AATGATGATGATGGTGATGG+AGG - chr7_2:79425025-79425044 Msa1080130:CDS 40.0%
TCTAGTAACTCTTTATGCGG+TGG + chr7_2:79425121-79425140 None:intergenic 40.0%
ACCGCATAAAGAGTTACTAG+AGG - chr7_2:79425120-79425139 Msa1080130:CDS 40.0%
AGGAACAATGTTAGGAACAG+GGG - chr7_2:79425256-79425275 Msa1080130:CDS 40.0%
! TTAAAGTGAGGAAAGGTGCA+CGG - chr7_2:79425300-79425319 Msa1080130:CDS 40.0%
AATAGGGTTGGGGTTATTGT+TGG - chr7_2:79425329-79425348 Msa1080130:CDS 40.0%
TGGGGTTATTGTTGGAATTG+TGG - chr7_2:79425337-79425356 Msa1080130:CDS 40.0%
! TTGGTTGGGATTGTTGTTGT+TGG - chr7_2:79425368-79425387 Msa1080130:CDS 40.0%
GTGTTGTGATATGTGTAGTG+AGG - chr7_2:79425390-79425409 Msa1080130:CDS 40.0%
TTGTGATATGTGTAGTGAGG+TGG - chr7_2:79425393-79425412 Msa1080130:CDS 40.0%
GTGAGGTGGAAAAAGAGAAA+AGG - chr7_2:79425407-79425426 Msa1080130:CDS 40.0%
GAGGTGGAAAAAGAGAAAAG+GGG - chr7_2:79425409-79425428 Msa1080130:CDS 40.0%
AGGTGGAAAAAGAGAAAAGG+GGG - chr7_2:79425410-79425429 Msa1080130:CDS 40.0%
TGAAAGAGGAGGATGAGAAT+TGG - chr7_2:79425435-79425454 Msa1080130:CDS 40.0%
GAAAGAGGAGGATGAGAATT+GGG - chr7_2:79425436-79425455 Msa1080130:CDS 40.0%
TCGGATCCAAGATTCCTATA+CGG + chr7_2:79425473-79425492 None:intergenic 40.0%
! CTCGACGGATCTAAAACTTT+CGG + chr7_2:79425492-79425511 None:intergenic 40.0%
ACGTTTAGGTGACACTTTCA+TGG - chr7_2:79424565-79424584 Msa1080130:CDS 40.0%
CGTTTAGGTGACACTTTCAT+GGG - chr7_2:79424566-79424585 Msa1080130:CDS 40.0%
GGTGCTTACTCTTGCATAAA+TGG + chr7_2:79424708-79424727 None:intergenic 40.0%
! CAGCAGGTTTAGAACTTGTT+TGG + chr7_2:79424751-79424770 None:intergenic 40.0%
!! CTTCGTCGTTTCTTTTGGTT+AGG - chr7_2:79424801-79424820 Msa1080130:intron 40.0%
TGGTTAGGTTAGAACAAGAC+GGG - chr7_2:79424816-79424835 Msa1080130:intron 40.0%
AACAAGACGGGAATCTCAAA+GGG - chr7_2:79424828-79424847 Msa1080130:intron 40.0%
GGGATTCAACAAAGTCTAGT+TGG - chr7_2:79424858-79424877 Msa1080130:intron 40.0%
CACAAGTTTCGCTAATAGCT+TGG + chr7_2:79424895-79424914 None:intergenic 40.0%
AACAAAGCTAGGTTTGAACC+GGG - chr7_2:79424983-79425002 Msa1080130:CDS 40.0%
TCATCATTAAAACACCCACC+CGG + chr7_2:79425013-79425032 None:intergenic 40.0%
!! AATGATGATGATGGTGATGG+AGG - chr7_2:79425025-79425044 Msa1080130:CDS 40.0%
TCTAGTAACTCTTTATGCGG+TGG + chr7_2:79425121-79425140 None:intergenic 40.0%
ACCGCATAAAGAGTTACTAG+AGG - chr7_2:79425120-79425139 Msa1080130:CDS 40.0%
AGGAACAATGTTAGGAACAG+GGG - chr7_2:79425256-79425275 Msa1080130:CDS 40.0%
! TTAAAGTGAGGAAAGGTGCA+CGG - chr7_2:79425300-79425319 Msa1080130:CDS 40.0%
AATAGGGTTGGGGTTATTGT+TGG - chr7_2:79425329-79425348 Msa1080130:CDS 40.0%
TGGGGTTATTGTTGGAATTG+TGG - chr7_2:79425337-79425356 Msa1080130:CDS 40.0%
! TTGGTTGGGATTGTTGTTGT+TGG - chr7_2:79425368-79425387 Msa1080130:CDS 40.0%
GTGTTGTGATATGTGTAGTG+AGG - chr7_2:79425390-79425409 Msa1080130:CDS 40.0%
TTGTGATATGTGTAGTGAGG+TGG - chr7_2:79425393-79425412 Msa1080130:CDS 40.0%
GTGAGGTGGAAAAAGAGAAA+AGG - chr7_2:79425407-79425426 Msa1080130:CDS 40.0%
GAGGTGGAAAAAGAGAAAAG+GGG - chr7_2:79425409-79425428 Msa1080130:CDS 40.0%
AGGTGGAAAAAGAGAAAAGG+GGG - chr7_2:79425410-79425429 Msa1080130:CDS 40.0%
TGAAAGAGGAGGATGAGAAT+TGG - chr7_2:79425435-79425454 Msa1080130:CDS 40.0%
GAAAGAGGAGGATGAGAATT+GGG - chr7_2:79425436-79425455 Msa1080130:CDS 40.0%
TCGGATCCAAGATTCCTATA+CGG + chr7_2:79425473-79425492 None:intergenic 40.0%
! CTCGACGGATCTAAAACTTT+CGG + chr7_2:79425492-79425511 None:intergenic 40.0%
! TTATGCAAGAGTAAGCACCG+AGG - chr7_2:79424709-79424728 Msa1080130:CDS 45.0%
!! TATGCAAGAGTAAGCACCGA+GGG - chr7_2:79424710-79424729 Msa1080130:CDS 45.0%
!! GTAAGCACCGAGGGTTATAT+TGG - chr7_2:79424719-79424738 Msa1080130:CDS 45.0%
GAACAAGACGGGAATCTCAA+AGG - chr7_2:79424827-79424846 Msa1080130:intron 45.0%
TGTGAGCTTCCAAATCCATG+TGG - chr7_2:79424911-79424930 Msa1080130:CDS 45.0%
CCATACGAACCACATGGATT+TGG + chr7_2:79424923-79424942 None:intergenic 45.0%
CCAAATCCATGTGGTTCGTA+TGG - chr7_2:79424920-79424939 Msa1080130:CDS 45.0%
CACAAACCATACGAACCACA+TGG + chr7_2:79424929-79424948 None:intergenic 45.0%
! TTCGTATGGTTTGTGTACCC+CGG - chr7_2:79424934-79424953 Msa1080130:CDS 45.0%
! GATTCTGAGAAAGGTTGGAG+TGG - chr7_2:79425093-79425112 Msa1080130:CDS 45.0%
! GAGAAAAGGGGGTATGAAAG+AGG - chr7_2:79425421-79425440 Msa1080130:CDS 45.0%
! AAAAGGGGGTATGAAAGAGG+AGG - chr7_2:79425424-79425443 Msa1080130:CDS 45.0%
CGGATCCAAGATTCCTATAC+GGG + chr7_2:79425472-79425491 None:intergenic 45.0%
! TTATGCAAGAGTAAGCACCG+AGG - chr7_2:79424709-79424728 Msa1080130:CDS 45.0%
!! TATGCAAGAGTAAGCACCGA+GGG - chr7_2:79424710-79424729 Msa1080130:CDS 45.0%
!! GTAAGCACCGAGGGTTATAT+TGG - chr7_2:79424719-79424738 Msa1080130:CDS 45.0%
GAACAAGACGGGAATCTCAA+AGG - chr7_2:79424827-79424846 Msa1080130:intron 45.0%
TGTGAGCTTCCAAATCCATG+TGG - chr7_2:79424911-79424930 Msa1080130:CDS 45.0%
CCATACGAACCACATGGATT+TGG + chr7_2:79424923-79424942 None:intergenic 45.0%
CCAAATCCATGTGGTTCGTA+TGG - chr7_2:79424920-79424939 Msa1080130:CDS 45.0%
CACAAACCATACGAACCACA+TGG + chr7_2:79424929-79424948 None:intergenic 45.0%
! TTCGTATGGTTTGTGTACCC+CGG - chr7_2:79424934-79424953 Msa1080130:CDS 45.0%
! GATTCTGAGAAAGGTTGGAG+TGG - chr7_2:79425093-79425112 Msa1080130:CDS 45.0%
! GAGAAAAGGGGGTATGAAAG+AGG - chr7_2:79425421-79425440 Msa1080130:CDS 45.0%
! AAAAGGGGGTATGAAAGAGG+AGG - chr7_2:79425424-79425443 Msa1080130:CDS 45.0%
CGGATCCAAGATTCCTATAC+GGG + chr7_2:79425472-79425491 None:intergenic 45.0%
! TCGTATGGTTTGTGTACCCC+GGG - chr7_2:79424935-79424954 Msa1080130:CDS 50.0%
AAGAACAACTAGACCCACCC+GGG + chr7_2:79424955-79424974 None:intergenic 50.0%
CAAGAACAACTAGACCCACC+CGG + chr7_2:79424956-79424975 None:intergenic 50.0%
TAGGTTTGAACCGGGTGAAC+CGG - chr7_2:79424991-79425010 Msa1080130:CDS 50.0%
!! GATGATGATGGTGATGGAGG+TGG - chr7_2:79425028-79425047 Msa1080130:CDS 50.0%
AGGAACAGGGGATGAGTCAA+AGG - chr7_2:79425268-79425287 Msa1080130:CDS 50.0%
AACAGGGGATGAGTCAAAGG+TGG - chr7_2:79425271-79425290 Msa1080130:CDS 50.0%
ACAGGGGATGAGTCAAAGGT+GGG - chr7_2:79425272-79425291 Msa1080130:CDS 50.0%
AAGGTGCACGGAGAAGGAAT+AGG - chr7_2:79425312-79425331 Msa1080130:CDS 50.0%
AGGTGCACGGAGAAGGAATA+GGG - chr7_2:79425313-79425332 Msa1080130:CDS 50.0%
CACGGAGAAGGAATAGGGTT+GGG - chr7_2:79425318-79425337 Msa1080130:CDS 50.0%
ACGGAGAAGGAATAGGGTTG+GGG - chr7_2:79425319-79425338 Msa1080130:CDS 50.0%
GATGAGAATTGGGCTTTGCC+TGG - chr7_2:79425446-79425465 Msa1080130:CDS 50.0%
! TCGTATGGTTTGTGTACCCC+GGG - chr7_2:79424935-79424954 Msa1080130:CDS 50.0%
AAGAACAACTAGACCCACCC+GGG + chr7_2:79424955-79424974 None:intergenic 50.0%
CAAGAACAACTAGACCCACC+CGG + chr7_2:79424956-79424975 None:intergenic 50.0%
TAGGTTTGAACCGGGTGAAC+CGG - chr7_2:79424991-79425010 Msa1080130:CDS 50.0%
!! GATGATGATGGTGATGGAGG+TGG - chr7_2:79425028-79425047 Msa1080130:CDS 50.0%
AGGAACAGGGGATGAGTCAA+AGG - chr7_2:79425268-79425287 Msa1080130:CDS 50.0%
AACAGGGGATGAGTCAAAGG+TGG - chr7_2:79425271-79425290 Msa1080130:CDS 50.0%
ACAGGGGATGAGTCAAAGGT+GGG - chr7_2:79425272-79425291 Msa1080130:CDS 50.0%
AAGGTGCACGGAGAAGGAAT+AGG - chr7_2:79425312-79425331 Msa1080130:CDS 50.0%
AGGTGCACGGAGAAGGAATA+GGG - chr7_2:79425313-79425332 Msa1080130:CDS 50.0%
CACGGAGAAGGAATAGGGTT+GGG - chr7_2:79425318-79425337 Msa1080130:CDS 50.0%
ACGGAGAAGGAATAGGGTTG+GGG - chr7_2:79425319-79425338 Msa1080130:CDS 50.0%
GATGAGAATTGGGCTTTGCC+TGG - chr7_2:79425446-79425465 Msa1080130:CDS 50.0%
! TATGGTTTGTGTACCCCGGG+TGG - chr7_2:79424938-79424957 Msa1080130:CDS 55.0%
! ATGGTTTGTGTACCCCGGGT+GGG - chr7_2:79424939-79424958 Msa1080130:CDS 55.0%
AGAACAACTAGACCCACCCG+GGG + chr7_2:79424954-79424973 None:intergenic 55.0%
AGGTTTGAACCGGGTGAACC+GGG - chr7_2:79424992-79425011 Msa1080130:CDS 55.0%
GTGGAGACTTGTGCAGTGGA+GGG - chr7_2:79425047-79425066 Msa1080130:CDS 55.0%
GACTTGTGCAGTGGAGGGAT+TGG - chr7_2:79425052-79425071 Msa1080130:CDS 55.0%
! TGAGGAAAGGTGCACGGAGA+AGG - chr7_2:79425306-79425325 Msa1080130:CDS 55.0%
GCACGGAGAAGGAATAGGGT+TGG - chr7_2:79425317-79425336 Msa1080130:CDS 55.0%
CCAAGATTCCTATACGGGCC+AGG + chr7_2:79425467-79425486 None:intergenic 55.0%
CCTGGCCCGTATAGGAATCT+TGG - chr7_2:79425464-79425483 Msa1080130:CDS 55.0%
CGCACTACTCGACATCTCGA+CGG + chr7_2:79425507-79425526 None:intergenic 55.0%
! TATGGTTTGTGTACCCCGGG+TGG - chr7_2:79424938-79424957 Msa1080130:CDS 55.0%
! ATGGTTTGTGTACCCCGGGT+GGG - chr7_2:79424939-79424958 Msa1080130:CDS 55.0%
AGAACAACTAGACCCACCCG+GGG + chr7_2:79424954-79424973 None:intergenic 55.0%
AGGTTTGAACCGGGTGAACC+GGG - chr7_2:79424992-79425011 Msa1080130:CDS 55.0%
GTGGAGACTTGTGCAGTGGA+GGG - chr7_2:79425047-79425066 Msa1080130:CDS 55.0%
GACTTGTGCAGTGGAGGGAT+TGG - chr7_2:79425052-79425071 Msa1080130:CDS 55.0%
! TGAGGAAAGGTGCACGGAGA+AGG - chr7_2:79425306-79425325 Msa1080130:CDS 55.0%
GCACGGAGAAGGAATAGGGT+TGG - chr7_2:79425317-79425336 Msa1080130:CDS 55.0%
CCAAGATTCCTATACGGGCC+AGG + chr7_2:79425467-79425486 None:intergenic 55.0%
CCTGGCCCGTATAGGAATCT+TGG - chr7_2:79425464-79425483 Msa1080130:CDS 55.0%
CGCACTACTCGACATCTCGA+CGG + chr7_2:79425507-79425526 None:intergenic 55.0%
TTTGAACCGGGTGAACCGGG+TGG - chr7_2:79424995-79425014 Msa1080130:CDS 60.0%
TTGAACCGGGTGAACCGGGT+GGG - chr7_2:79424996-79425015 Msa1080130:CDS 60.0%
AAACACCCACCCGGTTCACC+CGG + chr7_2:79425004-79425023 None:intergenic 60.0%
GGAGGTGGAGACTTGTGCAG+TGG - chr7_2:79425043-79425062 Msa1080130:CDS 60.0%
GGTGGAGACTTGTGCAGTGG+AGG - chr7_2:79425046-79425065 Msa1080130:CDS 60.0%
TTTGAACCGGGTGAACCGGG+TGG - chr7_2:79424995-79425014 Msa1080130:CDS 60.0%
TTGAACCGGGTGAACCGGGT+GGG - chr7_2:79424996-79425015 Msa1080130:CDS 60.0%
AAACACCCACCCGGTTCACC+CGG + chr7_2:79425004-79425023 None:intergenic 60.0%
GGAGGTGGAGACTTGTGCAG+TGG - chr7_2:79425043-79425062 Msa1080130:CDS 60.0%
GGTGGAGACTTGTGCAGTGG+AGG - chr7_2:79425046-79425065 Msa1080130:CDS 60.0%
GGGCTTTGCCTGGCCCGTAT+AGG - chr7_2:79425456-79425475 Msa1080130:CDS 65.0%
GGGCTTTGCCTGGCCCGTAT+AGG - chr7_2:79425456-79425475 Msa1080130:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 79424530 79425532 79424530 ID=Msa1080130;Name=Msa1080130
chr7_2 mRNA 79424530 79425532 79424530 ID=Msa1080130-mRNA-1;Parent=Msa1080130;Name=Msa1080130-mRNA-1;_AED=0.20;_eAED=0.21;_QI=0|0|0|1|1|1|2|0|306
chr7_2 exon 79424887 79425532 79424887 ID=Msa1080130-mRNA-1:exon:20006;Parent=Msa1080130-mRNA-1
chr7_2 exon 79424530 79424804 79424530 ID=Msa1080130-mRNA-1:exon:20005;Parent=Msa1080130-mRNA-1
chr7_2 CDS 79424887 79425532 79424887 ID=Msa1080130-mRNA-1:cds;Parent=Msa1080130-mRNA-1
chr7_2 CDS 79424530 79424804 79424530 ID=Msa1080130-mRNA-1:cds;Parent=Msa1080130-mRNA-1
Gene Sequence

>Msa1080130

ATGTCTTTAGTATCAACCAATAATCTCTACTCTTTACGTTTAGGTGACACTTTCATGGGTTTATACGAAAATCACGACAAAGAAAAAGGTAGTTTGTTAACAAAACGGTTATTTTTGTTATATTGGAAACGTTCTGCACTACAAGCAAAATCTAAAATCATAGAAGGTGATGGACCCATTTATGCAAGAGTAAGCACCGAGGGTTATATTGGAATGTACCAAACAAGTTCTAAACCTGCTGATGTTCAGAAATTCAACAGTTTTCAAGAAACTTCGTCGTTTCTTTTGGTTAGGTTAGAACAAGACGGGAATCTCAAAGGGTATTATTGGGATTCAACAAAGTCTAGTTGGATACTTAACTTCCAAGCTATTAGCGAAACTTGTGAGCTTCCAAATCCATGTGGTTCGTATGGTTTGTGTACCCCGGGTGGGTCTAGTTGTTCTTGTTTAGATAACAAAGCTAGGTTTGAACCGGGTGAACCGGGTGGGTGTTTTAATGATGATGATGGTGATGGAGGTGGAGACTTGTGCAGTGGAGGGATTGGCGAAGAGAATAGTTACAAGATTCTGAGAAAGGTTGGAGTGGAGCCACCGCATAAAGAGTTACTAGAGGAAGTAACAACGTTATCTTTAACAGAATGTGAGGGAACAATGTTAGGAACAGGGGATGAGTCAAAGGTGGGTTATTTTAAAGTGAGGAAAGGTGCACGGAGAAGGAATAGGGTTGGGGTTATTGTTGGAATTGTGGTTTCTGTTTTGGTTGGGATTGTTGTTGTTGGTGTTGTGATATGTGTAGTGAGGTGGAAAAAGAGAAAAGGGGGTATGAAAGAGGAGGATGAGAATTGGGCTTTGCCTGGCCCGTATAGGAATCTTGGATCCGAAAGTTTTAGATCCGTCGAGATGTCGAGTAGTGCGCATTAA

Protein sequence

>Msa1080130

MSLVSTNNLYSLRLGDTFMGLYENHDKEKGSLLTKRLFLLYWKRSALQAKSKIIEGDGPIYARVSTEGYIGMYQTSSKPADVQKFNSFQETSSFLLVRLEQDGNLKGYYWDSTKSSWILNFQAISETCELPNPCGSYGLCTPGGSSCSCLDNKARFEPGEPGGCFNDDDGDGGGDLCSGGIGEENSYKILRKVGVEPPHKELLEEVTTLSLTECEGTMLGTGDESKVGYFKVRKGARRRNRVGVIVGIVVSVLVGIVVVGVVICVVRWKKRKGGMKEEDENWALPGPYRNLGSESFRSVEMSSSAH*