AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1167310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1167310 MtrunA17_Chr7g0265791 90.278 504 10 4 1 469 1 500 0.0 902
Msa1167310 MtrunA17_Chr0c04g0492001 28.571 280 158 10 55 313 41 299 4.06e-18 87.4
Msa1167310 MtrunA17_Chr3g0134291 28.929 280 157 10 55 313 41 299 6.80e-18 86.7
Msa1167310 MtrunA17_Chr2g0318171 24.884 430 266 17 12 404 11 420 9.96e-18 86.3
Msa1167310 MtrunA17_Chr0c04g0492031 28.571 280 158 10 55 313 41 299 1.26e-17 85.9
Msa1167310 MtrunA17_Chr7g0244431 25.419 358 199 13 107 418 102 437 1.61e-17 84.7
Msa1167310 MtrunA17_Chr3g0106151 27.046 281 169 8 41 305 24 284 7.25e-16 80.5
Msa1167310 MtrunA17_Chr3g0106201 25.000 372 205 12 42 359 22 373 2.33e-15 79.0
Msa1167310 MtrunA17_Chr2g0333091 22.831 438 291 11 34 435 30 456 1.38e-14 76.6
Msa1167310 MtrunA17_Chr3g0106131 25.945 397 201 16 41 372 21 389 1.43e-14 76.3
Msa1167310 MtrunA17_Chr3g0106121 35.948 153 86 4 41 181 21 173 1.81e-14 76.3
Msa1167310 MtrunA17_Chr7g0257821 23.291 395 246 12 9 369 7 378 2.03e-13 72.8
Msa1167310 MtrunA17_Chr3g0137741 24.259 371 232 12 54 392 52 405 2.94e-13 72.4
Msa1167310 MtrunA17_Chr3g0106221 25.806 372 223 12 41 364 23 389 3.28e-13 72.0
Msa1167310 MtrunA17_Chr3g0106141 34.247 146 86 3 41 176 21 166 1.09e-12 70.5
Msa1167310 MtrunA17_Chr2g0314611 24.706 425 256 16 62 445 63 464 2.04e-12 69.7
Msa1167310 MtrunA17_Chr2g0315841 24.548 387 223 15 62 395 63 433 3.09e-12 68.2
Msa1167310 MtrunA17_Chr2g0318181 24.000 350 214 11 61 395 63 375 5.39e-12 67.4
Msa1167310 MtrunA17_Chr7g0237351 23.426 397 242 12 13 364 5 384 5.75e-12 68.2
Msa1167310 MtrunA17_Chr2g0315851 24.031 387 227 15 62 395 63 435 2.97e-11 65.5
Msa1167310 MtrunA17_Chr1g0202331 21.019 471 267 21 87 467 77 532 8.02e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1167310 AT5G03700.1 51.416 459 180 10 35 465 37 480 4.27e-153 444
Msa1167310 AT1G16905.1 28.646 384 200 19 62 394 59 419 1.25e-18 88.2
Msa1167310 AT4G32300.1 24.747 396 242 13 39 395 32 410 5.85e-18 87.4
Msa1167310 AT5G24080.2 22.391 460 264 18 60 434 50 501 1.75e-14 76.6
Msa1167310 AT1G61480.1 20.747 482 293 15 7 434 7 453 1.45e-12 70.5
Msa1167310 AT1G11280.3 22.930 314 206 10 39 336 26 319 5.41e-11 65.5
Msa1167310 AT1G11280.1 22.930 314 206 10 39 336 36 329 6.13e-11 65.5
Msa1167310 AT1G11280.5 22.619 336 222 11 39 356 26 341 6.24e-11 65.1
Msa1167310 AT1G11280.4 22.930 314 206 10 39 336 36 329 6.42e-11 65.5
Msa1167310 AT1G11280.2 22.930 314 206 10 39 336 26 319 7.01e-11 65.1

Find 129 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAATCTCAAAGGGTATTAT+TGG 0.229085 7_4:-59742797 Msa1167310:CDS
GGTGCTTACTCTTGCATAAA+TGG 0.242269 7_4:+59742929 None:intergenic
GTTCCTAACATTGTTCCTAT+TGG 0.255100 7_4:+59742382 None:intergenic
CGAGGGTATTTGTGGGAAAA+TGG 0.270674 7_4:+59743153 None:intergenic
CCCTTTCCCTTGAACCACTA+TGG 0.283811 7_4:-59743373 Msa1167310:CDS
TGGAATTGTGGTTTCTGTTT+TGG 0.285828 7_4:-59742284 Msa1167310:CDS
AATCTCTACTCTTTACGTTT+AGG 0.299181 7_4:-59743083 Msa1167310:CDS
ACGTAAAGAGTAGAGATTAT+TGG 0.315834 7_4:+59743088 None:intergenic
AGAAACTTCGTCGTTTCTTT+TGG 0.327593 7_4:-59742838 Msa1167310:CDS
AATAGGGTTGGGGTTATTGT+TGG 0.329282 7_4:-59742304 Msa1167310:CDS
TCGGATCCAAGATTCCTATA+CGG 0.334849 7_4:+59742163 None:intergenic
GAAAATCACGACAAAGAAAA+AGG 0.336915 7_4:-59743038 Msa1167310:CDS
CCATACGAACCACATGGATT+TGG 0.349570 7_4:+59742714 None:intergenic
CAGCAGGTTTAGAACTTGTT+TGG 0.369084 7_4:+59742886 None:intergenic
GAAAGAGGAGGATGAGAATT+GGG 0.370412 7_4:-59742197 Msa1167310:CDS
TGGGGTTATTGTTGGAATTG+TGG 0.370640 7_4:-59742296 Msa1167310:CDS
ACGTTTAGGTGACACTTTCA+TGG 0.378138 7_4:-59743069 Msa1167310:CDS
GAATCTCAAAGGGTATTATT+GGG 0.385265 7_4:-59742796 Msa1167310:CDS
GGGCTTTGCCTGGCCCGTAT+AGG 0.385386 7_4:-59742177 Msa1167310:CDS
GTAAGCACCGAGGGTTATAT+TGG 0.386812 7_4:-59742915 Msa1167310:CDS
TGAAAGAGGAGGATGAGAAT+TGG 0.393666 7_4:-59742198 Msa1167310:CDS
GATGAGAATTGGGCTTTGCC+TGG 0.395502 7_4:-59742187 Msa1167310:CDS
AAACATAACAAAACCCGGTT+TGG 0.400335 7_4:+59742413 None:intergenic
CCTGGCCCGTATAGGAATCT+TGG 0.400630 7_4:-59742169 Msa1167310:CDS
ACCAAGATACTGTGTGGGTT+GGG 0.401401 7_4:+59743342 None:intergenic
TTGGTTGGGATTGTTGTTGT+TGG 0.406997 7_4:-59742265 Msa1167310:CDS
CACGGAGAAGGAATAGGGTT+GGG 0.407268 7_4:-59742315 Msa1167310:CDS
ATAGGAACAATGTTAGGAAC+AGG 0.415563 7_4:-59742379 Msa1167310:CDS
GCAAAATCTAAAATCATAGA+AGG 0.419839 7_4:-59742960 Msa1167310:CDS
TATCCAATAGGAACAATGTT+AGG 0.420533 7_4:-59742385 Msa1167310:CDS
TTGAATTTCTGAACATCAGC+AGG 0.432916 7_4:+59742870 None:intergenic
TGGTGGATGTTGACCATGAT+AGG 0.433516 7_4:+59743261 None:intergenic
TGTTTGTACTAGTAAGTTTG+AGG 0.434494 7_4:+59743211 None:intergenic
CACAAGTTTCGCTAATAGCT+TGG 0.440991 7_4:+59742742 None:intergenic
CGTTTAGGTGACACTTTCAT+GGG 0.443125 7_4:-59743068 Msa1167310:CDS
GAACCCGAGAGAGAAGTTTC+CGG 0.448425 7_4:+59743439 None:intergenic
ACCATGATAGGGTTCTTTGT+GGG 0.450423 7_4:+59743273 None:intergenic
ACCCAACCCACACAGTATCT+TGG 0.453874 7_4:-59743343 Msa1167310:CDS
ATCTTGTACGAGGGTATTTG+TGG 0.458366 7_4:+59743145 None:intergenic
GTGCTTACTCTTGCATAAAT+GGG 0.460763 7_4:+59742930 None:intergenic
CTCGACGGATCTAAAACTTT+CGG 0.461250 7_4:+59742144 None:intergenic
CCAAATCCATGTGGTTCGTA+TGG 0.462161 7_4:-59742714 Msa1167310:intron
GGGATTCAACAAAGTCTAGT+TGG 0.465277 7_4:-59742776 Msa1167310:CDS
AAGGTGCACGGAGAAGGAAT+AGG 0.470387 7_4:-59742321 Msa1167310:CDS
CGGATCCAAGATTCCTATAC+GGG 0.473474 7_4:+59742164 None:intergenic
GCGTTGTATAATAACCAAAC+CGG 0.476217 7_4:-59742427 Msa1167310:CDS
TACAAGATTCTGAGAAAGGT+TGG 0.478101 7_4:-59742547 Msa1167310:CDS
TCCGGTAGGATCGGTGAGGA+TGG 0.479284 7_4:+59743457 None:intergenic
GACCATGATAGGGTTCTTTG+TGG 0.482393 7_4:+59743272 None:intergenic
GACCAAGATACTGTGTGGGT+TGG 0.482474 7_4:+59743341 None:intergenic
AAGGTAGTTTGTTAACAAAA+CGG 0.484249 7_4:-59743019 Msa1167310:CDS
AACCACGCGCTCACCGTTGG+TGG 0.488054 7_4:+59743244 None:intergenic
TAGTTACAAGATTCTGAGAA+AGG 0.492029 7_4:-59742551 Msa1167310:CDS
TCCATAGTGGTTCAAGGGAA+AGG 0.497589 7_4:+59743372 None:intergenic
CAAGACTACCGTTGAAGAAG+AGG 0.498874 7_4:+59743306 None:intergenic
AGGTGCACGGAGAAGGAATA+GGG 0.499165 7_4:-59742320 Msa1167310:CDS
ATCGGTGAGGATGGGTTGAA+AGG 0.499686 7_4:+59743466 None:intergenic
GATTGTTGCAAAAGATGTTA+AGG 0.505959 7_4:+59743553 None:intergenic
TGGCCGTCCATAGTGGTTCA+AGG 0.506314 7_4:+59743366 None:intergenic
TGGTTAGGTTAGAACAAGAC+GGG 0.512333 7_4:-59742818 Msa1167310:CDS
AAGCCTTTGAGAAGCTCTTG+TGG 0.514091 7_4:+59743518 None:intergenic
GAGGATGGGTTGAAAGGAGG+TGG 0.514601 7_4:+59743472 None:intergenic
CCGGTAGGATCGGTGAGGAT+GGG 0.515364 7_4:+59743458 None:intergenic
GAAGAAGAGGCGCGTGGTGT+GGG 0.517147 7_4:+59743319 None:intergenic
TTTGAGAAGCTCTTGTGGGA+TGG 0.521091 7_4:+59743523 None:intergenic
CCATAGTGGTTCAAGGGAAA+GGG 0.521431 7_4:+59743373 None:intergenic
GACTTGTGCAGTGGAGGGAT+TGG 0.523694 7_4:-59742583 Msa1167310:CDS
CTACCGGAAACTTCTCTCTC+GGG 0.525044 7_4:-59743442 Msa1167310:CDS
CCTACCGGAAACTTCTCTCT+CGG 0.525872 7_4:-59743443 Msa1167310:CDS
TCTAAAATCATAGAAGGTGA+TGG 0.528671 7_4:-59742954 Msa1167310:CDS
TGAGGAAAGGTGCACGGAGA+AGG 0.531685 7_4:-59742327 Msa1167310:CDS
AACAAGACGGGAATCTCAAA+GGG 0.531757 7_4:-59742806 Msa1167310:CDS
AGCCTTTGAGAAGCTCTTGT+GGG 0.535324 7_4:+59743519 None:intergenic
GTTGGGTTGGCCGTCCATAG+TGG 0.535752 7_4:+59743359 None:intergenic
TCTTGTACGAGGGTATTTGT+GGG 0.537157 7_4:+59743146 None:intergenic
GAACAAGACGGGAATCTCAA+AGG 0.540237 7_4:-59742807 Msa1167310:CDS
TGAAGAAGAGGCGCGTGGTG+TGG 0.545063 7_4:+59743318 None:intergenic
GGTGAGGATGGGTTGAAAGG+AGG 0.550449 7_4:+59743469 None:intergenic
GGTGGAGACTTGTGCAGTGG+AGG 0.550599 7_4:-59742589 Msa1167310:CDS
AGGAACAGGGGATGAGTCAA+AGG 0.556839 7_4:-59742365 Msa1167310:CDS
CCCATCCTCACCGATCCTAC+CGG 0.557827 7_4:-59743458 Msa1167310:CDS
TCCTCTAGTAACTCTTTATG+CGG 0.558201 7_4:+59742514 None:intergenic
CGTTGTATAATAACCAAACC+GGG 0.564803 7_4:-59742426 Msa1167310:CDS
AAGAACCACGCGCTCACCGT+TGG 0.568373 7_4:+59743241 None:intergenic
AGAGAAGTTTCCGGTAGGAT+CGG 0.568706 7_4:+59743448 None:intergenic
GTTATCTTTAACAGAATGTG+AGG 0.575632 7_4:-59742482 Msa1167310:CDS
ATCCCACAAGAGCTTCTCAA+AGG 0.581973 7_4:-59743521 Msa1167310:CDS
TCTAGTAACTCTTTATGCGG+TGG 0.582196 7_4:+59742517 None:intergenic
AAGGAGGTGGATGTTGAGAG+TGG 0.584748 7_4:+59743485 None:intergenic
ACCCACAAAGAACCCTATCA+TGG 0.585380 7_4:-59743274 Msa1167310:CDS
TTGGTTAGGTTAGAACAAGA+CGG 0.585405 7_4:-59742819 Msa1167310:CDS
GTGGAGACTTGTGCAGTGGA+GGG 0.586292 7_4:-59742588 Msa1167310:CDS
GTACATTCCAATATAACCCT+CGG 0.587317 7_4:+59742908 None:intergenic
GGTGGATGTTGACCATGATA+GGG 0.588463 7_4:+59743262 None:intergenic
GGATGTTGAGAGTGGAGATG+AGG 0.588810 7_4:+59743493 None:intergenic
TTCCCTTGAACCACTATGGA+CGG 0.592559 7_4:-59743369 Msa1167310:CDS
GCACGGAGAAGGAATAGGGT+TGG 0.594548 7_4:-59742316 Msa1167310:CDS
ACGGAGAAGGAATAGGGTTG+GGG 0.595008 7_4:-59742314 Msa1167310:CDS
GGCCGTCCATAGTGGTTCAA+GGG 0.595077 7_4:+59743367 None:intergenic
ATCCACCAACGGTGAGCGCG+TGG 0.597615 7_4:-59743246 Msa1167310:CDS
AGATACTGTGTGGGTTGGGT+TGG 0.597895 7_4:+59743346 None:intergenic
ACAGGGGATGAGTCAAAGGT+GGG 0.600129 7_4:-59742361 Msa1167310:CDS
TTAAAGTGAGGAAAGGTGCA+CGG 0.603602 7_4:-59742333 Msa1167310:CDS
ATCCAAAACATAACAAAACC+CGG 0.603883 7_4:+59742408 None:intergenic
ACCACGCGCCTCTTCTTCAA+CGG 0.605894 7_4:-59743314 Msa1167310:CDS
AAATGGAAACTTTCCCAAAG+TGG 0.609345 7_4:+59743170 None:intergenic
AACAGGGGATGAGTCAAAGG+TGG 0.611797 7_4:-59742362 Msa1167310:CDS
AAGCTCTTGTGGGATGGAAG+TGG 0.612049 7_4:+59743529 None:intergenic
CACAAACCATACGAACCACA+TGG 0.615636 7_4:+59742708 None:intergenic
GATTCTGAGAAAGGTTGGAG+TGG 0.618823 7_4:-59742542 Msa1167310:CDS
TTGTGATATGTGTAGTGAGG+TGG 0.623058 7_4:-59742240 Msa1167310:CDS
CGCACTACTCGACATCTCGA+CGG 0.625373 7_4:+59742129 None:intergenic
AGGAACAATGTTAGGAACAG+GGG 0.629514 7_4:-59742377 Msa1167310:CDS
TATGCAAGAGTAAGCACCGA+GGG 0.634595 7_4:-59742924 Msa1167310:CDS
GTGTTGTGATATGTGTAGTG+AGG 0.634695 7_4:-59742243 Msa1167310:CDS
TGTTGCAAAAGATGTTAAGG+TGG 0.643053 7_4:+59743556 None:intergenic
TAGGAACAATGTTAGGAACA+GGG 0.647964 7_4:-59742378 Msa1167310:CDS
TTATCTTTAACAGAATGTGA+GGG 0.662315 7_4:-59742481 Msa1167310:CDS
CCGAGAGAGAAGTTTCCGGT+AGG 0.665125 7_4:+59743443 None:intergenic
GTGGGACCAAGATACTGTGT+GGG 0.669264 7_4:+59743337 None:intergenic
AAGGGAAAGGGTGTGAACGA+CGG 0.672396 7_4:+59743385 None:intergenic
ACCGCATAAAGAGTTACTAG+AGG 0.673293 7_4:-59742515 Msa1167310:CDS
TGTGGGACCAAGATACTGTG+TGG 0.677336 7_4:+59743336 None:intergenic
TCATGGTCAACATCCACCAA+CGG 0.689681 7_4:-59743257 Msa1167310:CDS
GGAGGTGGAGACTTGTGCAG+TGG 0.693599 7_4:-59742592 Msa1167310:intron
ACCGTTGAAGAAGAGGCGCG+TGG 0.703254 7_4:+59743313 None:intergenic
TGTGAGCTTCCAAATCCATG+TGG 0.726162 7_4:-59742723 Msa1167310:CDS
AGTTTCCGGTAGGATCGGTG+AGG 0.731059 7_4:+59743453 None:intergenic
TTATGCAAGAGTAAGCACCG+AGG 0.833555 7_4:-59742925 Msa1167310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACGGTTATTTTTGTTATAT+TGG - chr7_4:59742736-59742755 Msa1167310:CDS 20.0%
!! TGAGAAAAATTGTAAATGTT+GGG - chr7_4:59743285-59743304 Msa1167310:CDS 20.0%
!!! AACGGTTATTTTTGTTATAT+TGG - chr7_4:59742736-59742755 Msa1167310:CDS 20.0%
!! TGAGAAAAATTGTAAATGTT+GGG - chr7_4:59743285-59743304 Msa1167310:CDS 20.0%
!!! AAGGTAGTTTGTTAACAAAA+CGG - chr7_4:59742718-59742737 Msa1167310:CDS 25.0%
!! GCAAAATCTAAAATCATAGA+AGG - chr7_4:59742777-59742796 Msa1167310:CDS 25.0%
! TTATCTTTAACAGAATGTGA+GGG - chr7_4:59743256-59743275 Msa1167310:CDS 25.0%
! GTGAGAAAAATTGTAAATGT+TGG - chr7_4:59743284-59743303 Msa1167310:CDS 25.0%
! GAGAAAAATTGTAAATGTTG+GGG - chr7_4:59743286-59743305 Msa1167310:CDS 25.0%
!!! TATGTTTTGGATTATCCAAT+AGG - chr7_4:59743340-59743359 Msa1167310:CDS 25.0%
!!! AAGGTAGTTTGTTAACAAAA+CGG - chr7_4:59742718-59742737 Msa1167310:CDS 25.0%
!! GCAAAATCTAAAATCATAGA+AGG - chr7_4:59742777-59742796 Msa1167310:CDS 25.0%
! TTATCTTTAACAGAATGTGA+GGG - chr7_4:59743256-59743275 Msa1167310:CDS 25.0%
! GTGAGAAAAATTGTAAATGT+TGG - chr7_4:59743284-59743303 Msa1167310:CDS 25.0%
! GAGAAAAATTGTAAATGTTG+GGG - chr7_4:59743286-59743305 Msa1167310:CDS 25.0%
!!! TATGTTTTGGATTATCCAAT+AGG - chr7_4:59743340-59743359 Msa1167310:CDS 25.0%
GATTGTTGCAAAAGATGTTA+AGG + chr7_4:59742187-59742206 None:intergenic 30.0%
TGTTTGTACTAGTAAGTTTG+AGG + chr7_4:59742529-59742548 None:intergenic 30.0%
ACGTAAAGAGTAGAGATTAT+TGG + chr7_4:59742652-59742671 None:intergenic 30.0%
AATCTCTACTCTTTACGTTT+AGG - chr7_4:59742654-59742673 Msa1167310:intron 30.0%
GAAAATCACGACAAAGAAAA+AGG - chr7_4:59742699-59742718 Msa1167310:intron 30.0%
! TCTAAAATCATAGAAGGTGA+TGG - chr7_4:59742783-59742802 Msa1167310:CDS 30.0%
!! GAATCTCAAAGGGTATTATT+GGG - chr7_4:59742941-59742960 Msa1167310:CDS 30.0%
CTTGTTTAGATAACAAAGCT+AGG - chr7_4:59743075-59743094 Msa1167310:CDS 30.0%
!! TTTAATGATGATGATGGTGA+TGG - chr7_4:59743124-59743143 Msa1167310:CDS 30.0%
! TAGTTACAAGATTCTGAGAA+AGG - chr7_4:59743186-59743205 Msa1167310:CDS 30.0%
GTTATCTTTAACAGAATGTG+AGG - chr7_4:59743255-59743274 Msa1167310:CDS 30.0%
ATCCAAAACATAACAAAACC+CGG + chr7_4:59743332-59743351 None:intergenic 30.0%
TATCCAATAGGAACAATGTT+AGG - chr7_4:59743352-59743371 Msa1167310:CDS 30.0%
!!! GGTTATTTTAAAGTGAGGAA+AGG - chr7_4:59743397-59743416 Msa1167310:CDS 30.0%
GATTGTTGCAAAAGATGTTA+AGG + chr7_4:59742187-59742206 None:intergenic 30.0%
TGTTTGTACTAGTAAGTTTG+AGG + chr7_4:59742529-59742548 None:intergenic 30.0%
ACGTAAAGAGTAGAGATTAT+TGG + chr7_4:59742652-59742671 None:intergenic 30.0%
AATCTCTACTCTTTACGTTT+AGG - chr7_4:59742654-59742673 Msa1167310:intron 30.0%
GAAAATCACGACAAAGAAAA+AGG - chr7_4:59742699-59742718 Msa1167310:intron 30.0%
! TCTAAAATCATAGAAGGTGA+TGG - chr7_4:59742783-59742802 Msa1167310:CDS 30.0%
!! GAATCTCAAAGGGTATTATT+GGG - chr7_4:59742941-59742960 Msa1167310:CDS 30.0%
CTTGTTTAGATAACAAAGCT+AGG - chr7_4:59743075-59743094 Msa1167310:CDS 30.0%
!! TTTAATGATGATGATGGTGA+TGG - chr7_4:59743124-59743143 Msa1167310:CDS 30.0%
! TAGTTACAAGATTCTGAGAA+AGG - chr7_4:59743186-59743205 Msa1167310:CDS 30.0%
GTTATCTTTAACAGAATGTG+AGG - chr7_4:59743255-59743274 Msa1167310:CDS 30.0%
ATCCAAAACATAACAAAACC+CGG + chr7_4:59743332-59743351 None:intergenic 30.0%
TATCCAATAGGAACAATGTT+AGG - chr7_4:59743352-59743371 Msa1167310:CDS 30.0%
!!! GGTTATTTTAAAGTGAGGAA+AGG - chr7_4:59743397-59743416 Msa1167310:CDS 30.0%
TGTTGCAAAAGATGTTAAGG+TGG + chr7_4:59742184-59742203 None:intergenic 35.0%
!!! GTTTTATGTCGTTTTGGTTG+TGG + chr7_4:59742329-59742348 None:intergenic 35.0%
AAATGGAAACTTTCCCAAAG+TGG + chr7_4:59742570-59742589 None:intergenic 35.0%
!! GAAGTTTTGATCTTGTACGA+GGG + chr7_4:59742604-59742623 None:intergenic 35.0%
!! TGAAGTTTTGATCTTGTACG+AGG + chr7_4:59742605-59742624 None:intergenic 35.0%
GTGCTTACTCTTGCATAAAT+GGG + chr7_4:59742810-59742829 None:intergenic 35.0%
GTACATTCCAATATAACCCT+CGG + chr7_4:59742832-59742851 None:intergenic 35.0%
TTGAATTTCTGAACATCAGC+AGG + chr7_4:59742870-59742889 None:intergenic 35.0%
! AGAAACTTCGTCGTTTCTTT+TGG - chr7_4:59742899-59742918 Msa1167310:CDS 35.0%
TTGGTTAGGTTAGAACAAGA+CGG - chr7_4:59742918-59742937 Msa1167310:CDS 35.0%
!! GGAATCTCAAAGGGTATTAT+TGG - chr7_4:59742940-59742959 Msa1167310:CDS 35.0%
TAACAAAGCTAGGTTTGAAC+CGG - chr7_4:59743085-59743104 Msa1167310:CDS 35.0%
!!! GGGTGTTTTAATGATGATGA+TGG - chr7_4:59743118-59743137 Msa1167310:CDS 35.0%
! TACAAGATTCTGAGAAAGGT+TGG - chr7_4:59743190-59743209 Msa1167310:CDS 35.0%
TCCTCTAGTAACTCTTTATG+CGG + chr7_4:59743226-59743245 None:intergenic 35.0%
GCGTTGTATAATAACCAAAC+CGG - chr7_4:59743310-59743329 Msa1167310:CDS 35.0%
CGTTGTATAATAACCAAACC+GGG - chr7_4:59743311-59743330 Msa1167310:CDS 35.0%
AAACATAACAAAACCCGGTT+TGG + chr7_4:59743327-59743346 None:intergenic 35.0%
!!! AACCGGGTTTTGTTATGTTT+TGG - chr7_4:59743327-59743346 Msa1167310:CDS 35.0%
GTTCCTAACATTGTTCCTAT+TGG + chr7_4:59743358-59743377 None:intergenic 35.0%
ATAGGAACAATGTTAGGAAC+AGG - chr7_4:59743358-59743377 Msa1167310:CDS 35.0%
TAGGAACAATGTTAGGAACA+GGG - chr7_4:59743359-59743378 Msa1167310:CDS 35.0%
!!! AGGTGGGTTATTTTAAAGTG+AGG - chr7_4:59743392-59743411 Msa1167310:CDS 35.0%
! TGGAATTGTGGTTTCTGTTT+TGG - chr7_4:59743453-59743472 Msa1167310:CDS 35.0%
!!! ATTGTGGTTTCTGTTTTGGT+TGG - chr7_4:59743457-59743476 Msa1167310:CDS 35.0%
!!! TTGTGGTTTCTGTTTTGGTT+GGG - chr7_4:59743458-59743477 Msa1167310:CDS 35.0%
TGAGGTGGAAAAAGAGAAAA+GGG - chr7_4:59743512-59743531 Msa1167310:CDS 35.0%
TGTTGCAAAAGATGTTAAGG+TGG + chr7_4:59742184-59742203 None:intergenic 35.0%
!!! GTTTTATGTCGTTTTGGTTG+TGG + chr7_4:59742329-59742348 None:intergenic 35.0%
AAATGGAAACTTTCCCAAAG+TGG + chr7_4:59742570-59742589 None:intergenic 35.0%
!! GAAGTTTTGATCTTGTACGA+GGG + chr7_4:59742604-59742623 None:intergenic 35.0%
!! TGAAGTTTTGATCTTGTACG+AGG + chr7_4:59742605-59742624 None:intergenic 35.0%
GTGCTTACTCTTGCATAAAT+GGG + chr7_4:59742810-59742829 None:intergenic 35.0%
GTACATTCCAATATAACCCT+CGG + chr7_4:59742832-59742851 None:intergenic 35.0%
TTGAATTTCTGAACATCAGC+AGG + chr7_4:59742870-59742889 None:intergenic 35.0%
! AGAAACTTCGTCGTTTCTTT+TGG - chr7_4:59742899-59742918 Msa1167310:CDS 35.0%
TTGGTTAGGTTAGAACAAGA+CGG - chr7_4:59742918-59742937 Msa1167310:CDS 35.0%
!! GGAATCTCAAAGGGTATTAT+TGG - chr7_4:59742940-59742959 Msa1167310:CDS 35.0%
TAACAAAGCTAGGTTTGAAC+CGG - chr7_4:59743085-59743104 Msa1167310:CDS 35.0%
!!! GGGTGTTTTAATGATGATGA+TGG - chr7_4:59743118-59743137 Msa1167310:CDS 35.0%
! TACAAGATTCTGAGAAAGGT+TGG - chr7_4:59743190-59743209 Msa1167310:CDS 35.0%
TCCTCTAGTAACTCTTTATG+CGG + chr7_4:59743226-59743245 None:intergenic 35.0%
GCGTTGTATAATAACCAAAC+CGG - chr7_4:59743310-59743329 Msa1167310:CDS 35.0%
CGTTGTATAATAACCAAACC+GGG - chr7_4:59743311-59743330 Msa1167310:CDS 35.0%
AAACATAACAAAACCCGGTT+TGG + chr7_4:59743327-59743346 None:intergenic 35.0%
!!! AACCGGGTTTTGTTATGTTT+TGG - chr7_4:59743327-59743346 Msa1167310:CDS 35.0%
GTTCCTAACATTGTTCCTAT+TGG + chr7_4:59743358-59743377 None:intergenic 35.0%
ATAGGAACAATGTTAGGAAC+AGG - chr7_4:59743358-59743377 Msa1167310:CDS 35.0%
TAGGAACAATGTTAGGAACA+GGG - chr7_4:59743359-59743378 Msa1167310:CDS 35.0%
!!! AGGTGGGTTATTTTAAAGTG+AGG - chr7_4:59743392-59743411 Msa1167310:CDS 35.0%
! TGGAATTGTGGTTTCTGTTT+TGG - chr7_4:59743453-59743472 Msa1167310:CDS 35.0%
!!! ATTGTGGTTTCTGTTTTGGT+TGG - chr7_4:59743457-59743476 Msa1167310:CDS 35.0%
!!! TTGTGGTTTCTGTTTTGGTT+GGG - chr7_4:59743458-59743477 Msa1167310:CDS 35.0%
TGAGGTGGAAAAAGAGAAAA+GGG - chr7_4:59743512-59743531 Msa1167310:CDS 35.0%
!!! TTATGTCGTTTTGGTTGTGG+CGG + chr7_4:59742326-59742345 None:intergenic 40.0%
!!! TCAACGGTAGTCTTGTTTTG+TGG - chr7_4:59742439-59742458 Msa1167310:CDS 40.0%
!!! CAACGGTAGTCTTGTTTTGT+GGG - chr7_4:59742440-59742459 Msa1167310:CDS 40.0%
ACCATGATAGGGTTCTTTGT+GGG + chr7_4:59742467-59742486 None:intergenic 40.0%
! AACCTCAAAAACGCCACTTT+GGG - chr7_4:59742554-59742573 Msa1167310:CDS 40.0%
!! TCTTGTACGAGGGTATTTGT+GGG + chr7_4:59742594-59742613 None:intergenic 40.0%
!! ATCTTGTACGAGGGTATTTG+TGG + chr7_4:59742595-59742614 None:intergenic 40.0%
ACGTTTAGGTGACACTTTCA+TGG - chr7_4:59742668-59742687 Msa1167310:intron 40.0%
CGTTTAGGTGACACTTTCAT+GGG - chr7_4:59742669-59742688 Msa1167310:intron 40.0%
GGTGCTTACTCTTGCATAAA+TGG + chr7_4:59742811-59742830 None:intergenic 40.0%
! CAGCAGGTTTAGAACTTGTT+TGG + chr7_4:59742854-59742873 None:intergenic 40.0%
!! CTTCGTCGTTTCTTTTGGTT+AGG - chr7_4:59742904-59742923 Msa1167310:CDS 40.0%
TGGTTAGGTTAGAACAAGAC+GGG - chr7_4:59742919-59742938 Msa1167310:CDS 40.0%
AACAAGACGGGAATCTCAAA+GGG - chr7_4:59742931-59742950 Msa1167310:CDS 40.0%
GGGATTCAACAAAGTCTAGT+TGG - chr7_4:59742961-59742980 Msa1167310:CDS 40.0%
CACAAGTTTCGCTAATAGCT+TGG + chr7_4:59742998-59743017 None:intergenic 40.0%
AACAAAGCTAGGTTTGAACC+GGG - chr7_4:59743086-59743105 Msa1167310:CDS 40.0%
!! AATGATGATGATGGTGATGG+AGG - chr7_4:59743127-59743146 Msa1167310:CDS 40.0%
TCTAGTAACTCTTTATGCGG+TGG + chr7_4:59743223-59743242 None:intergenic 40.0%
ACCGCATAAAGAGTTACTAG+AGG - chr7_4:59743222-59743241 Msa1167310:CDS 40.0%
AGGAACAATGTTAGGAACAG+GGG - chr7_4:59743360-59743379 Msa1167310:CDS 40.0%
! TTAAAGTGAGGAAAGGTGCA+CGG - chr7_4:59743404-59743423 Msa1167310:CDS 40.0%
AATAGGGTTGGGGTTATTGT+TGG - chr7_4:59743433-59743452 Msa1167310:CDS 40.0%
TGGGGTTATTGTTGGAATTG+TGG - chr7_4:59743441-59743460 Msa1167310:CDS 40.0%
! TTGGTTGGGATTGTTGTTGT+TGG - chr7_4:59743472-59743491 Msa1167310:CDS 40.0%
GTGTTGTGATATGTGTAGTG+AGG - chr7_4:59743494-59743513 Msa1167310:CDS 40.0%
TTGTGATATGTGTAGTGAGG+TGG - chr7_4:59743497-59743516 Msa1167310:CDS 40.0%
GTGAGGTGGAAAAAGAGAAA+AGG - chr7_4:59743511-59743530 Msa1167310:CDS 40.0%
GAGGTGGAAAAAGAGAAAAG+GGG - chr7_4:59743513-59743532 Msa1167310:CDS 40.0%
AGGTGGAAAAAGAGAAAAGG+GGG - chr7_4:59743514-59743533 Msa1167310:CDS 40.0%
TGAAAGAGGAGGATGAGAAT+TGG - chr7_4:59743539-59743558 Msa1167310:CDS 40.0%
GAAAGAGGAGGATGAGAATT+GGG - chr7_4:59743540-59743559 Msa1167310:CDS 40.0%
TCGGATCCAAGATTCCTATA+CGG + chr7_4:59743577-59743596 None:intergenic 40.0%
! CTCGACGGATCTAAAACTTT+CGG + chr7_4:59743596-59743615 None:intergenic 40.0%
!!! TTATGTCGTTTTGGTTGTGG+CGG + chr7_4:59742326-59742345 None:intergenic 40.0%
!!! TCAACGGTAGTCTTGTTTTG+TGG - chr7_4:59742439-59742458 Msa1167310:CDS 40.0%
!!! CAACGGTAGTCTTGTTTTGT+GGG - chr7_4:59742440-59742459 Msa1167310:CDS 40.0%
ACCATGATAGGGTTCTTTGT+GGG + chr7_4:59742467-59742486 None:intergenic 40.0%
! AACCTCAAAAACGCCACTTT+GGG - chr7_4:59742554-59742573 Msa1167310:CDS 40.0%
!! TCTTGTACGAGGGTATTTGT+GGG + chr7_4:59742594-59742613 None:intergenic 40.0%
!! ATCTTGTACGAGGGTATTTG+TGG + chr7_4:59742595-59742614 None:intergenic 40.0%
ACGTTTAGGTGACACTTTCA+TGG - chr7_4:59742668-59742687 Msa1167310:intron 40.0%
CGTTTAGGTGACACTTTCAT+GGG - chr7_4:59742669-59742688 Msa1167310:intron 40.0%
GGTGCTTACTCTTGCATAAA+TGG + chr7_4:59742811-59742830 None:intergenic 40.0%
! CAGCAGGTTTAGAACTTGTT+TGG + chr7_4:59742854-59742873 None:intergenic 40.0%
!! CTTCGTCGTTTCTTTTGGTT+AGG - chr7_4:59742904-59742923 Msa1167310:CDS 40.0%
TGGTTAGGTTAGAACAAGAC+GGG - chr7_4:59742919-59742938 Msa1167310:CDS 40.0%
AACAAGACGGGAATCTCAAA+GGG - chr7_4:59742931-59742950 Msa1167310:CDS 40.0%
GGGATTCAACAAAGTCTAGT+TGG - chr7_4:59742961-59742980 Msa1167310:CDS 40.0%
CACAAGTTTCGCTAATAGCT+TGG + chr7_4:59742998-59743017 None:intergenic 40.0%
AACAAAGCTAGGTTTGAACC+GGG - chr7_4:59743086-59743105 Msa1167310:CDS 40.0%
!! AATGATGATGATGGTGATGG+AGG - chr7_4:59743127-59743146 Msa1167310:CDS 40.0%
TCTAGTAACTCTTTATGCGG+TGG + chr7_4:59743223-59743242 None:intergenic 40.0%
ACCGCATAAAGAGTTACTAG+AGG - chr7_4:59743222-59743241 Msa1167310:CDS 40.0%
AGGAACAATGTTAGGAACAG+GGG - chr7_4:59743360-59743379 Msa1167310:CDS 40.0%
! TTAAAGTGAGGAAAGGTGCA+CGG - chr7_4:59743404-59743423 Msa1167310:CDS 40.0%
AATAGGGTTGGGGTTATTGT+TGG - chr7_4:59743433-59743452 Msa1167310:CDS 40.0%
TGGGGTTATTGTTGGAATTG+TGG - chr7_4:59743441-59743460 Msa1167310:CDS 40.0%
! TTGGTTGGGATTGTTGTTGT+TGG - chr7_4:59743472-59743491 Msa1167310:CDS 40.0%
GTGTTGTGATATGTGTAGTG+AGG - chr7_4:59743494-59743513 Msa1167310:CDS 40.0%
TTGTGATATGTGTAGTGAGG+TGG - chr7_4:59743497-59743516 Msa1167310:CDS 40.0%
GTGAGGTGGAAAAAGAGAAA+AGG - chr7_4:59743511-59743530 Msa1167310:CDS 40.0%
GAGGTGGAAAAAGAGAAAAG+GGG - chr7_4:59743513-59743532 Msa1167310:CDS 40.0%
AGGTGGAAAAAGAGAAAAGG+GGG - chr7_4:59743514-59743533 Msa1167310:CDS 40.0%
TGAAAGAGGAGGATGAGAAT+TGG - chr7_4:59743539-59743558 Msa1167310:CDS 40.0%
GAAAGAGGAGGATGAGAATT+GGG - chr7_4:59743540-59743559 Msa1167310:CDS 40.0%
TCGGATCCAAGATTCCTATA+CGG + chr7_4:59743577-59743596 None:intergenic 40.0%
! CTCGACGGATCTAAAACTTT+CGG + chr7_4:59743596-59743615 None:intergenic 40.0%
TTTGAGAAGCTCTTGTGGGA+TGG + chr7_4:59742217-59742236 None:intergenic 45.0%
ATCCCACAAGAGCTTCTCAA+AGG - chr7_4:59742216-59742235 Msa1167310:CDS 45.0%
! AGCCTTTGAGAAGCTCTTGT+GGG + chr7_4:59742221-59742240 None:intergenic 45.0%
! AAGCCTTTGAGAAGCTCTTG+TGG + chr7_4:59742222-59742241 None:intergenic 45.0%
AGAGAAGTTTCCGGTAGGAT+CGG + chr7_4:59742292-59742311 None:intergenic 45.0%
!! CGGCGAGTTTTATGTCGTTT+TGG + chr7_4:59742335-59742354 None:intergenic 45.0%
CCATAGTGGTTCAAGGGAAA+GGG + chr7_4:59742367-59742386 None:intergenic 45.0%
TCCATAGTGGTTCAAGGGAA+AGG + chr7_4:59742368-59742387 None:intergenic 45.0%
TTCCCTTGAACCACTATGGA+CGG - chr7_4:59742368-59742387 Msa1167310:CDS 45.0%
ACCAAGATACTGTGTGGGTT+GGG + chr7_4:59742398-59742417 None:intergenic 45.0%
CAAGACTACCGTTGAAGAAG+AGG + chr7_4:59742434-59742453 None:intergenic 45.0%
ACCCACAAAGAACCCTATCA+TGG - chr7_4:59742463-59742482 Msa1167310:CDS 45.0%
GACCATGATAGGGTTCTTTG+TGG + chr7_4:59742468-59742487 None:intergenic 45.0%
GGTGGATGTTGACCATGATA+GGG + chr7_4:59742478-59742497 None:intergenic 45.0%
! TGGTGGATGTTGACCATGAT+AGG + chr7_4:59742479-59742498 None:intergenic 45.0%
TCATGGTCAACATCCACCAA+CGG - chr7_4:59742480-59742499 Msa1167310:CDS 45.0%
CAACCTCAAAAACGCCACTT+TGG - chr7_4:59742553-59742572 Msa1167310:CDS 45.0%
! TTCCCAAAGTGGCGTTTTTG+AGG + chr7_4:59742559-59742578 None:intergenic 45.0%
!! CGAGGGTATTTGTGGGAAAA+TGG + chr7_4:59742587-59742606 None:intergenic 45.0%
! TTATGCAAGAGTAAGCACCG+AGG - chr7_4:59742812-59742831 Msa1167310:CDS 45.0%
!! TATGCAAGAGTAAGCACCGA+GGG - chr7_4:59742813-59742832 Msa1167310:CDS 45.0%
!! GTAAGCACCGAGGGTTATAT+TGG - chr7_4:59742822-59742841 Msa1167310:CDS 45.0%
GAACAAGACGGGAATCTCAA+AGG - chr7_4:59742930-59742949 Msa1167310:CDS 45.0%
TGTGAGCTTCCAAATCCATG+TGG - chr7_4:59743014-59743033 Msa1167310:CDS 45.0%
CCATACGAACCACATGGATT+TGG + chr7_4:59743026-59743045 None:intergenic 45.0%
CCAAATCCATGTGGTTCGTA+TGG - chr7_4:59743023-59743042 Msa1167310:CDS 45.0%
CACAAACCATACGAACCACA+TGG + chr7_4:59743032-59743051 None:intergenic 45.0%
! TTCGTATGGTTTGTGTACCC+CGG - chr7_4:59743037-59743056 Msa1167310:CDS 45.0%
! GATTCTGAGAAAGGTTGGAG+TGG - chr7_4:59743195-59743214 Msa1167310:CDS 45.0%
! GAGAAAAGGGGGTATGAAAG+AGG - chr7_4:59743525-59743544 Msa1167310:CDS 45.0%
! AAAAGGGGGTATGAAAGAGG+AGG - chr7_4:59743528-59743547 Msa1167310:CDS 45.0%
CGGATCCAAGATTCCTATAC+GGG + chr7_4:59743576-59743595 None:intergenic 45.0%
TTTGAGAAGCTCTTGTGGGA+TGG + chr7_4:59742217-59742236 None:intergenic 45.0%
ATCCCACAAGAGCTTCTCAA+AGG - chr7_4:59742216-59742235 Msa1167310:CDS 45.0%
! AGCCTTTGAGAAGCTCTTGT+GGG + chr7_4:59742221-59742240 None:intergenic 45.0%
! AAGCCTTTGAGAAGCTCTTG+TGG + chr7_4:59742222-59742241 None:intergenic 45.0%
AGAGAAGTTTCCGGTAGGAT+CGG + chr7_4:59742292-59742311 None:intergenic 45.0%
!! CGGCGAGTTTTATGTCGTTT+TGG + chr7_4:59742335-59742354 None:intergenic 45.0%
CCATAGTGGTTCAAGGGAAA+GGG + chr7_4:59742367-59742386 None:intergenic 45.0%
TCCATAGTGGTTCAAGGGAA+AGG + chr7_4:59742368-59742387 None:intergenic 45.0%
TTCCCTTGAACCACTATGGA+CGG - chr7_4:59742368-59742387 Msa1167310:CDS 45.0%
ACCAAGATACTGTGTGGGTT+GGG + chr7_4:59742398-59742417 None:intergenic 45.0%
CAAGACTACCGTTGAAGAAG+AGG + chr7_4:59742434-59742453 None:intergenic 45.0%
ACCCACAAAGAACCCTATCA+TGG - chr7_4:59742463-59742482 Msa1167310:CDS 45.0%
GACCATGATAGGGTTCTTTG+TGG + chr7_4:59742468-59742487 None:intergenic 45.0%
GGTGGATGTTGACCATGATA+GGG + chr7_4:59742478-59742497 None:intergenic 45.0%
! TGGTGGATGTTGACCATGAT+AGG + chr7_4:59742479-59742498 None:intergenic 45.0%
TCATGGTCAACATCCACCAA+CGG - chr7_4:59742480-59742499 Msa1167310:CDS 45.0%
CAACCTCAAAAACGCCACTT+TGG - chr7_4:59742553-59742572 Msa1167310:CDS 45.0%
! TTCCCAAAGTGGCGTTTTTG+AGG + chr7_4:59742559-59742578 None:intergenic 45.0%
!! CGAGGGTATTTGTGGGAAAA+TGG + chr7_4:59742587-59742606 None:intergenic 45.0%
! TTATGCAAGAGTAAGCACCG+AGG - chr7_4:59742812-59742831 Msa1167310:CDS 45.0%
!! TATGCAAGAGTAAGCACCGA+GGG - chr7_4:59742813-59742832 Msa1167310:CDS 45.0%
!! GTAAGCACCGAGGGTTATAT+TGG - chr7_4:59742822-59742841 Msa1167310:CDS 45.0%
GAACAAGACGGGAATCTCAA+AGG - chr7_4:59742930-59742949 Msa1167310:CDS 45.0%
TGTGAGCTTCCAAATCCATG+TGG - chr7_4:59743014-59743033 Msa1167310:CDS 45.0%
CCATACGAACCACATGGATT+TGG + chr7_4:59743026-59743045 None:intergenic 45.0%
CCAAATCCATGTGGTTCGTA+TGG - chr7_4:59743023-59743042 Msa1167310:CDS 45.0%
CACAAACCATACGAACCACA+TGG + chr7_4:59743032-59743051 None:intergenic 45.0%
! TTCGTATGGTTTGTGTACCC+CGG - chr7_4:59743037-59743056 Msa1167310:CDS 45.0%
! GATTCTGAGAAAGGTTGGAG+TGG - chr7_4:59743195-59743214 Msa1167310:CDS 45.0%
! GAGAAAAGGGGGTATGAAAG+AGG - chr7_4:59743525-59743544 Msa1167310:CDS 45.0%
! AAAAGGGGGTATGAAAGAGG+AGG - chr7_4:59743528-59743547 Msa1167310:CDS 45.0%
CGGATCCAAGATTCCTATAC+GGG + chr7_4:59743576-59743595 None:intergenic 45.0%
AAGCTCTTGTGGGATGGAAG+TGG + chr7_4:59742211-59742230 None:intergenic 50.0%
GGATGTTGAGAGTGGAGATG+AGG + chr7_4:59742247-59742266 None:intergenic 50.0%
AAGGAGGTGGATGTTGAGAG+TGG + chr7_4:59742255-59742274 None:intergenic 50.0%
!! ATCGGTGAGGATGGGTTGAA+AGG + chr7_4:59742274-59742293 None:intergenic 50.0%
CCTACCGGAAACTTCTCTCT+CGG - chr7_4:59742294-59742313 Msa1167310:CDS 50.0%
CTACCGGAAACTTCTCTCTC+GGG - chr7_4:59742295-59742314 Msa1167310:CDS 50.0%
GAACCCGAGAGAGAAGTTTC+CGG + chr7_4:59742301-59742320 None:intergenic 50.0%
! AAGGGAAAGGGTGTGAACGA+CGG + chr7_4:59742355-59742374 None:intergenic 50.0%
CCCTTTCCCTTGAACCACTA+TGG - chr7_4:59742364-59742383 Msa1167310:CDS 50.0%
!! AGATACTGTGTGGGTTGGGT+TGG + chr7_4:59742394-59742413 None:intergenic 50.0%
ACCCAACCCACACAGTATCT+TGG - chr7_4:59742394-59742413 Msa1167310:CDS 50.0%
GACCAAGATACTGTGTGGGT+TGG + chr7_4:59742399-59742418 None:intergenic 50.0%
GTGGGACCAAGATACTGTGT+GGG + chr7_4:59742403-59742422 None:intergenic 50.0%
TGTGGGACCAAGATACTGTG+TGG + chr7_4:59742404-59742423 None:intergenic 50.0%
! TCGTATGGTTTGTGTACCCC+GGG - chr7_4:59743038-59743057 Msa1167310:CDS 50.0%
AAGAACAACTAGACCCACCC+GGG + chr7_4:59743058-59743077 None:intergenic 50.0%
CAAGAACAACTAGACCCACC+CGG + chr7_4:59743059-59743078 None:intergenic 50.0%
CTAGGTTTGAACCGGGTGAA+CGG - chr7_4:59743093-59743112 Msa1167310:CDS 50.0%
TAGGTTTGAACCGGGTGAAC+GGG - chr7_4:59743094-59743113 Msa1167310:CDS 50.0%
!! GATGATGATGGTGATGGAGG+TGG - chr7_4:59743130-59743149 Msa1167310:CDS 50.0%
AGGAACAGGGGATGAGTCAA+AGG - chr7_4:59743372-59743391 Msa1167310:CDS 50.0%
AACAGGGGATGAGTCAAAGG+TGG - chr7_4:59743375-59743394 Msa1167310:CDS 50.0%
ACAGGGGATGAGTCAAAGGT+GGG - chr7_4:59743376-59743395 Msa1167310:CDS 50.0%
AAGGTGCACGGAGAAGGAAT+AGG - chr7_4:59743416-59743435 Msa1167310:CDS 50.0%
AGGTGCACGGAGAAGGAATA+GGG - chr7_4:59743417-59743436 Msa1167310:CDS 50.0%
CACGGAGAAGGAATAGGGTT+GGG - chr7_4:59743422-59743441 Msa1167310:CDS 50.0%
ACGGAGAAGGAATAGGGTTG+GGG - chr7_4:59743423-59743442 Msa1167310:CDS 50.0%
GATGAGAATTGGGCTTTGCC+TGG - chr7_4:59743550-59743569 Msa1167310:CDS 50.0%
AAGCTCTTGTGGGATGGAAG+TGG + chr7_4:59742211-59742230 None:intergenic 50.0%
GGATGTTGAGAGTGGAGATG+AGG + chr7_4:59742247-59742266 None:intergenic 50.0%
AAGGAGGTGGATGTTGAGAG+TGG + chr7_4:59742255-59742274 None:intergenic 50.0%
!! ATCGGTGAGGATGGGTTGAA+AGG + chr7_4:59742274-59742293 None:intergenic 50.0%
CCTACCGGAAACTTCTCTCT+CGG - chr7_4:59742294-59742313 Msa1167310:CDS 50.0%
CTACCGGAAACTTCTCTCTC+GGG - chr7_4:59742295-59742314 Msa1167310:CDS 50.0%
GAACCCGAGAGAGAAGTTTC+CGG + chr7_4:59742301-59742320 None:intergenic 50.0%
! AAGGGAAAGGGTGTGAACGA+CGG + chr7_4:59742355-59742374 None:intergenic 50.0%
CCCTTTCCCTTGAACCACTA+TGG - chr7_4:59742364-59742383 Msa1167310:CDS 50.0%
!! AGATACTGTGTGGGTTGGGT+TGG + chr7_4:59742394-59742413 None:intergenic 50.0%
ACCCAACCCACACAGTATCT+TGG - chr7_4:59742394-59742413 Msa1167310:CDS 50.0%
GACCAAGATACTGTGTGGGT+TGG + chr7_4:59742399-59742418 None:intergenic 50.0%
GTGGGACCAAGATACTGTGT+GGG + chr7_4:59742403-59742422 None:intergenic 50.0%
TGTGGGACCAAGATACTGTG+TGG + chr7_4:59742404-59742423 None:intergenic 50.0%
! TCGTATGGTTTGTGTACCCC+GGG - chr7_4:59743038-59743057 Msa1167310:CDS 50.0%
AAGAACAACTAGACCCACCC+GGG + chr7_4:59743058-59743077 None:intergenic 50.0%
CAAGAACAACTAGACCCACC+CGG + chr7_4:59743059-59743078 None:intergenic 50.0%
CTAGGTTTGAACCGGGTGAA+CGG - chr7_4:59743093-59743112 Msa1167310:CDS 50.0%
TAGGTTTGAACCGGGTGAAC+GGG - chr7_4:59743094-59743113 Msa1167310:CDS 50.0%
!! GATGATGATGGTGATGGAGG+TGG - chr7_4:59743130-59743149 Msa1167310:CDS 50.0%
AGGAACAGGGGATGAGTCAA+AGG - chr7_4:59743372-59743391 Msa1167310:CDS 50.0%
AACAGGGGATGAGTCAAAGG+TGG - chr7_4:59743375-59743394 Msa1167310:CDS 50.0%
ACAGGGGATGAGTCAAAGGT+GGG - chr7_4:59743376-59743395 Msa1167310:CDS 50.0%
AAGGTGCACGGAGAAGGAAT+AGG - chr7_4:59743416-59743435 Msa1167310:CDS 50.0%
AGGTGCACGGAGAAGGAATA+GGG - chr7_4:59743417-59743436 Msa1167310:CDS 50.0%
CACGGAGAAGGAATAGGGTT+GGG - chr7_4:59743422-59743441 Msa1167310:CDS 50.0%
ACGGAGAAGGAATAGGGTTG+GGG - chr7_4:59743423-59743442 Msa1167310:CDS 50.0%
GATGAGAATTGGGCTTTGCC+TGG - chr7_4:59743550-59743569 Msa1167310:CDS 50.0%
!! GAGGATGGGTTGAAAGGAGG+TGG + chr7_4:59742268-59742287 None:intergenic 55.0%
!! GGTGAGGATGGGTTGAAAGG+AGG + chr7_4:59742271-59742290 None:intergenic 55.0%
AGTTTCCGGTAGGATCGGTG+AGG + chr7_4:59742287-59742306 None:intergenic 55.0%
CCGAGAGAGAAGTTTCCGGT+AGG + chr7_4:59742297-59742316 None:intergenic 55.0%
!!! TGTCGTTTTGGTTGTGGCGG+AGG + chr7_4:59742323-59742342 None:intergenic 55.0%
GGCCGTCCATAGTGGTTCAA+GGG + chr7_4:59742373-59742392 None:intergenic 55.0%
TGGCCGTCCATAGTGGTTCA+AGG + chr7_4:59742374-59742393 None:intergenic 55.0%
ACCACGCGCCTCTTCTTCAA+CGG - chr7_4:59742423-59742442 Msa1167310:CDS 55.0%
! TATGGTTTGTGTACCCCGGG+TGG - chr7_4:59743041-59743060 Msa1167310:CDS 55.0%
! ATGGTTTGTGTACCCCGGGT+GGG - chr7_4:59743042-59743061 Msa1167310:CDS 55.0%
AGAACAACTAGACCCACCCG+GGG + chr7_4:59743057-59743076 None:intergenic 55.0%
TTTGAACCGGGTGAACGGGT+GGG - chr7_4:59743098-59743117 Msa1167310:CDS 55.0%
AAAACACCCACCCGTTCACC+CGG + chr7_4:59743107-59743126 None:intergenic 55.0%
GTGGAGACTTGTGCAGTGGA+GGG - chr7_4:59743149-59743168 Msa1167310:CDS 55.0%
GACTTGTGCAGTGGAGGGAT+TGG - chr7_4:59743154-59743173 Msa1167310:CDS 55.0%
! TGAGGAAAGGTGCACGGAGA+AGG - chr7_4:59743410-59743429 Msa1167310:CDS 55.0%
GCACGGAGAAGGAATAGGGT+TGG - chr7_4:59743421-59743440 Msa1167310:CDS 55.0%
CCAAGATTCCTATACGGGCC+AGG + chr7_4:59743571-59743590 None:intergenic 55.0%
CCTGGCCCGTATAGGAATCT+TGG - chr7_4:59743568-59743587 Msa1167310:CDS 55.0%
CGCACTACTCGACATCTCGA+CGG + chr7_4:59743611-59743630 None:intergenic 55.0%
!! GAGGATGGGTTGAAAGGAGG+TGG + chr7_4:59742268-59742287 None:intergenic 55.0%
!! GGTGAGGATGGGTTGAAAGG+AGG + chr7_4:59742271-59742290 None:intergenic 55.0%
AGTTTCCGGTAGGATCGGTG+AGG + chr7_4:59742287-59742306 None:intergenic 55.0%
CCGAGAGAGAAGTTTCCGGT+AGG + chr7_4:59742297-59742316 None:intergenic 55.0%
!!! TGTCGTTTTGGTTGTGGCGG+AGG + chr7_4:59742323-59742342 None:intergenic 55.0%
GGCCGTCCATAGTGGTTCAA+GGG + chr7_4:59742373-59742392 None:intergenic 55.0%
TGGCCGTCCATAGTGGTTCA+AGG + chr7_4:59742374-59742393 None:intergenic 55.0%
ACCACGCGCCTCTTCTTCAA+CGG - chr7_4:59742423-59742442 Msa1167310:CDS 55.0%
! TATGGTTTGTGTACCCCGGG+TGG - chr7_4:59743041-59743060 Msa1167310:CDS 55.0%
! ATGGTTTGTGTACCCCGGGT+GGG - chr7_4:59743042-59743061 Msa1167310:CDS 55.0%
AGAACAACTAGACCCACCCG+GGG + chr7_4:59743057-59743076 None:intergenic 55.0%
TTTGAACCGGGTGAACGGGT+GGG - chr7_4:59743098-59743117 Msa1167310:CDS 55.0%
AAAACACCCACCCGTTCACC+CGG + chr7_4:59743107-59743126 None:intergenic 55.0%
GTGGAGACTTGTGCAGTGGA+GGG - chr7_4:59743149-59743168 Msa1167310:CDS 55.0%
GACTTGTGCAGTGGAGGGAT+TGG - chr7_4:59743154-59743173 Msa1167310:CDS 55.0%
! TGAGGAAAGGTGCACGGAGA+AGG - chr7_4:59743410-59743429 Msa1167310:CDS 55.0%
GCACGGAGAAGGAATAGGGT+TGG - chr7_4:59743421-59743440 Msa1167310:CDS 55.0%
CCAAGATTCCTATACGGGCC+AGG + chr7_4:59743571-59743590 None:intergenic 55.0%
CCTGGCCCGTATAGGAATCT+TGG - chr7_4:59743568-59743587 Msa1167310:CDS 55.0%
CGCACTACTCGACATCTCGA+CGG + chr7_4:59743611-59743630 None:intergenic 55.0%
CCGGTAGGATCGGTGAGGAT+GGG + chr7_4:59742282-59742301 None:intergenic 60.0%
CCCATCCTCACCGATCCTAC+CGG - chr7_4:59742279-59742298 Msa1167310:CDS 60.0%
TCCGGTAGGATCGGTGAGGA+TGG + chr7_4:59742283-59742302 None:intergenic 60.0%
!! GTTGGGTTGGCCGTCCATAG+TGG + chr7_4:59742381-59742400 None:intergenic 60.0%
! GAAGAAGAGGCGCGTGGTGT+GGG + chr7_4:59742421-59742440 None:intergenic 60.0%
! TGAAGAAGAGGCGCGTGGTG+TGG + chr7_4:59742422-59742441 None:intergenic 60.0%
! ACCGTTGAAGAAGAGGCGCG+TGG + chr7_4:59742427-59742446 None:intergenic 60.0%
AAGAACCACGCGCTCACCGT+TGG + chr7_4:59742499-59742518 None:intergenic 60.0%
GTTTGAACCGGGTGAACGGG+TGG - chr7_4:59743097-59743116 Msa1167310:CDS 60.0%
GGAGGTGGAGACTTGTGCAG+TGG - chr7_4:59743145-59743164 Msa1167310:CDS 60.0%
GGTGGAGACTTGTGCAGTGG+AGG - chr7_4:59743148-59743167 Msa1167310:CDS 60.0%
CCGGTAGGATCGGTGAGGAT+GGG + chr7_4:59742282-59742301 None:intergenic 60.0%
CCCATCCTCACCGATCCTAC+CGG - chr7_4:59742279-59742298 Msa1167310:CDS 60.0%
TCCGGTAGGATCGGTGAGGA+TGG + chr7_4:59742283-59742302 None:intergenic 60.0%
!! GTTGGGTTGGCCGTCCATAG+TGG + chr7_4:59742381-59742400 None:intergenic 60.0%
! GAAGAAGAGGCGCGTGGTGT+GGG + chr7_4:59742421-59742440 None:intergenic 60.0%
! TGAAGAAGAGGCGCGTGGTG+TGG + chr7_4:59742422-59742441 None:intergenic 60.0%
! ACCGTTGAAGAAGAGGCGCG+TGG + chr7_4:59742427-59742446 None:intergenic 60.0%
AAGAACCACGCGCTCACCGT+TGG + chr7_4:59742499-59742518 None:intergenic 60.0%
GTTTGAACCGGGTGAACGGG+TGG - chr7_4:59743097-59743116 Msa1167310:CDS 60.0%
GGAGGTGGAGACTTGTGCAG+TGG - chr7_4:59743145-59743164 Msa1167310:CDS 60.0%
GGTGGAGACTTGTGCAGTGG+AGG - chr7_4:59743148-59743167 Msa1167310:CDS 60.0%
ATCCACCAACGGTGAGCGCG+TGG - chr7_4:59742491-59742510 Msa1167310:CDS 65.0%
AACCACGCGCTCACCGTTGG+TGG + chr7_4:59742496-59742515 None:intergenic 65.0%
GGGCTTTGCCTGGCCCGTAT+AGG - chr7_4:59743560-59743579 Msa1167310:CDS 65.0%
ATCCACCAACGGTGAGCGCG+TGG - chr7_4:59742491-59742510 Msa1167310:CDS 65.0%
AACCACGCGCTCACCGTTGG+TGG + chr7_4:59742496-59742515 None:intergenic 65.0%
GGGCTTTGCCTGGCCCGTAT+AGG - chr7_4:59743560-59743579 Msa1167310:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 59742123 59743636 59742123 ID=Msa1167310;Name=Msa1167310
chr7_4 mRNA 59742123 59743636 59742123 ID=Msa1167310-mRNA-1;Parent=Msa1167310;Name=Msa1167310-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|2|0|469
chr7_4 exon 59742715 59743636 59742715 ID=Msa1167310-mRNA-1:exon:18556;Parent=Msa1167310-mRNA-1
chr7_4 exon 59742123 59742610 59742123 ID=Msa1167310-mRNA-1:exon:18555;Parent=Msa1167310-mRNA-1
chr7_4 CDS 59742715 59743636 59742715 ID=Msa1167310-mRNA-1:cds;Parent=Msa1167310-mRNA-1
chr7_4 CDS 59742123 59742610 59742123 ID=Msa1167310-mRNA-1:cds;Parent=Msa1167310-mRNA-1
Gene Sequence

>Msa1167310

ATGTATGCAACACATAAGCTTCATTTCACAAATATAATTCTCGTTCTATTCTTTTCTACCACCTTAACATCTTTTGCAACAATCACCACTTCCATCCCACAAGAGCTTCTCAAAGGCTTCTCCTCATCTCCACTCTCAACATCCACCTCCTTTCAACCCATCCTCACCGATCCTACCGGAAACTTCTCTCTCGGGTTCCTCCGCCACAACCAAAACGACATAAAACTCGCCGTCGTTCACACCCTTTCCCTTGAACCACTATGGACGGCCAACCCAACCCACACAGTATCTTGGTCCCACACCACGCGCCTCTTCTTCAACGGTAGTCTTGTTTTGTGGGACCCACAAAGAACCCTATCATGGTCAACATCCACCAACGGTGAGCGCGTGGTTCTTCTCAATACCTCAAACTTACTAGTACAAACAAAAACAACCTCAAAAACGCCACTTTGGGAAAGTTTCCATTTTCCCACAAATACCCTCGTACAAGATCAAAACTTCACTTCAAACATGTCTTTAGTATCAACCAATAATCTCTACTCTTTACGTTTAGGTGACACTTTCATGGGTTTATACGAAAATCACGACAAAGAAAAAGGTAGTTTGTTAACAAAACGGTTATTTTTGTTATATTGGAAACGTTCTGCACTACAAGCAAAATCTAAAATCATAGAAGGTGATGGACCCATTTATGCAAGAGTAAGCACCGAGGGTTATATTGGAATGTACCAAACAAGTTCTAAACCTGCTGATGTTCAGAAATTCAACAGTTTTCAAGAAACTTCGTCGTTTCTTTTGGTTAGGTTAGAACAAGACGGGAATCTCAAAGGGTATTATTGGGATTCAACAAAGTCTAGTTGGATACTTAACTTCCAAGCTATTAGCGAAACTTGTGAGCTTCCAAATCCATGTGGTTCGTATGGTGGAGACTTGTGCAGTGGAGGGATTGGCGAAGAGAATAGTTACAAGATTCTGAGAAAGGTTGGAGTGGAGCCACCGCATAAAGAGTTACTAGAGGAAGTAACAACGTTATCTTTAACAGAATGTGAGGGTTTGTGTGAGAAAAATTGTAAATGTTGGGGAGCGTTGTATAATAACCAAACCGGGTTTTGTTATGTTTTGGATTATCCAATAGGAACAATGTTAGGAACAGGGGATGAGTCAAAGGTGGGTTATTTTAAAGTGAGGAAAGGTGCACGGAGAAGGAATAGGGTTGGGGTTATTGTTGGAATTGTGGTTTCTGTTTTGGTTGGGATTGTTGTTGTTGGTGTTGTGATATGTGTAGTGAGGTGGAAAAAGAGAAAAGGGGGTATGAAAGAGGAGGATGAGAATTGGGCTTTGCCTGGCCCGTATAGGAATCTTGGATCCGAAAGTTTTAGATCCGTCGAGATGTCGAGTAGTGCGCATTAA

Protein sequence

>Msa1167310

MYATHKLHFTNIILVLFFSTTLTSFATITTSIPQELLKGFSSSPLSTSTSFQPILTDPTGNFSLGFLRHNQNDIKLAVVHTLSLEPLWTANPTHTVSWSHTTRLFFNGSLVLWDPQRTLSWSTSTNGERVVLLNTSNLLVQTKTTSKTPLWESFHFPTNTLVQDQNFTSNMSLVSTNNLYSLRLGDTFMGLYENHDKEKGSLLTKRLFLLYWKRSALQAKSKIIEGDGPIYARVSTEGYIGMYQTSSKPADVQKFNSFQETSSFLLVRLEQDGNLKGYYWDSTKSSWILNFQAISETCELPNPCGSYGGDLCSGGIGEENSYKILRKVGVEPPHKELLEEVTTLSLTECEGLCEKNCKCWGALYNNQTGFCYVLDYPIGTMLGTGDESKVGYFKVRKGARRRNRVGVIVGIVVSVLVGIVVVGVVICVVRWKKRKGGMKEEDENWALPGPYRNLGSESFRSVEMSSSAH*