AlfalfaGEDB | Msa0695880

M. sativa cultivar zhongmu-4 / Msa0695880

KEGG: -
GO: GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031982 GO:0032050 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0695880	XP_013457066.1	97.487	199	4	1	9	206	108	306	4.14e-134	388

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0695880	sp\|Q9SKU1\|CLC1_ARATH	57.488	207	72	4	10	202	118	322	5.25e-54	178

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0695880	G7ZZ83	97.487	199	4	1	9	206	108	306	1.98e-134	388

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0060730	Msa0695880	-0.819884	9.187405e-53	-8.615850e-47
Msa0077340	Msa0695880	0.836311	1.007982e-56	-8.615850e-47
Msa0099700	Msa0695880	0.804143	2.488991e-49	-8.615850e-47
Msa0106620	Msa0695880	0.817883	2.617851e-52	-8.615850e-47
Msa0106710	Msa0695880	0.819711	1.006057e-52	-8.615850e-47
Msa0611210	Msa0695880	0.803167	3.966749e-49	-8.615850e-47
Msa0653450	Msa0695880	0.902926	5.878438e-79	-8.615850e-47
Msa0664540	Msa0695880	0.807607	4.654829e-50	-8.615850e-47
Msa0674480	Msa0695880	0.839754	1.311212e-57	-8.615850e-47
Msa0695880	Msa0697160	0.815958	7.077916e-52	-8.615850e-47
Msa0695880	Msa0702720	0.817690	2.893586e-52	-8.615850e-47
Msa0695880	Msa0833530	0.827495	1.516211e-54	-8.615850e-47
Msa0695880	Msa0858390	0.813285	2.765175e-51	-8.615850e-47
Msa0695880	Msa0878220	0.801022	1.095602e-48	-8.615850e-47
Msa0695880	Msa0945630	0.814988	1.163594e-51	-8.615850e-47
Msa0695880	Msa1047760	0.829544	4.851554e-55	-8.615850e-47
Msa0695880	Msa1068600	0.807500	4.903005e-50	-8.615850e-47
Msa0695880	Msa1101090	0.838598	2.614740e-57	-8.615850e-47
Msa0695880	Msa1129330	0.805877	1.079462e-49	-8.615850e-47
Msa0695880	Msa1145810	0.802711	4.927782e-49	-8.615850e-47
Msa0695880	Msa1191180	0.811072	8.406981e-51	-8.615850e-47
Msa0695880	Msa1211780	0.804739	1.869237e-49	-8.615850e-47
Msa0695880	Msa1232700	0.803372	3.596942e-49	-8.615850e-47
Msa0695880	Msa1244500	0.815365	9.595558e-52	-8.615850e-47
Msa0695880	Msa1315750	0.800003	1.766753e-48	-8.615850e-47
Msa0695880	Msa1325410	-0.821925	3.114773e-53	-8.615850e-47
Msa0695880	Msa1332760	0.807159	5.793216e-50	-8.615850e-47
Msa0695880	Msa1341840	0.825428	4.713281e-54	-8.615850e-47
Msa0695880	Msa1345100	0.816711	4.802999e-52	-8.615850e-47
Msa0695880	Msa1405460	0.837199	5.984032e-57	-8.615850e-47
Msa0695880	Msa1442920	0.801734	7.830435e-49	-8.615850e-47
Msa0695880	Msa1452710	0.816957	4.230629e-52	-8.615850e-47
Msa0695880	Msa1464880	0.834748	2.505090e-56	-8.615850e-47
Msa0125360	Msa0695880	0.814450	1.531359e-51	-8.615850e-47
Msa0237420	Msa0695880	0.813799	2.131325e-51	-8.615850e-47
Msa0468270	Msa0695880	0.805000	1.649107e-49	-8.615850e-47
Msa0240900	Msa0695880	0.809127	2.206444e-50	-8.615850e-47
Msa0287840	Msa0695880	0.810443	1.149840e-50	-8.615850e-47
Msa0341690	Msa0695880	0.804581	2.016432e-49	-8.615850e-47
Msa0529030	Msa0695880	0.838183	3.345742e-57	-8.615850e-47
Msa0555190	Msa0695880	0.823427	1.392988e-53	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0695880	MtrunA17_Chr4g0047571	97.487	199	4	1	9	206	108	306	3.81e-138	388
Msa0695880	MtrunA17_Chr2g0281981	75.377	199	41	2	9	206	122	313	1.17e-85	255
Msa0695880	MtrunA17_Chr8g0387061	60.190	211	71	4	9	206	136	346	2.18e-58	187

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0695880	AT2G20760.1	57.488	207	72	4	10	202	118	322	5.34e-55	178
Msa0695880	AT2G40060.1	65.152	132	44	1	9	138	97	228	2.07e-48	159
Msa0695880	AT3G51890.1	61.314	137	50	1	10	146	107	240	4.00e-47	155

Find 68 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GCATCCTTTGGTTGTGATTC+AGG	0.112857	4_4:+65584061	None:intergenic
GTTTGCCTGGCTTTGGGCCT+TGG	0.150519	4_4:+65584263	None:intergenic
CGGTGGGTTTGCCTGGCTTT+GGG	0.248540	4_4:+65584257	None:intergenic
GCAAACCCACCGACCTTTCT+AGG	0.257216	4_4:-65584246	Msa0695880:CDS
TCGGTGGGTTTGCCTGGCTT+TGG	0.260717	4_4:+65584256	None:intergenic
TTTGTGAAAATTCTCTTGAT+TGG	0.330165	4_4:+65584402	None:intergenic
TGAATCTACAGTACCGTTAT+TGG	0.331003	4_4:+65584036	None:intergenic
GGTGCTGATCCATTTGGTTT+AGG	0.333375	4_4:+65584094	None:intergenic
TGAGAAGAAAAGAGGCAAAA+AGG	0.365407	4_4:-65584317	Msa0695880:CDS
AAAATTACTGGAAAGCAATT+GGG	0.366531	4_4:-65584369	Msa0695880:CDS
TGCCTGGCTTTGGGCCTTGG+AGG	0.380338	4_4:+65584266	None:intergenic
TTCCCTTTGGAGTCTTTAGC+AGG	0.387984	4_4:+65584157	None:intergenic
CCGTTATTGGCAGCATCCTT+TGG	0.394987	4_4:+65584049	None:intergenic
GGTTTAGGTGCTGATCCATT+TGG	0.396493	4_4:+65584109	None:intergenic
GAAAGGTCGGTGGGTTTGCC+TGG	0.402706	4_4:+65584250	None:intergenic
ATTATTGTCTATTATGACCT+TGG	0.418043	4_4:-65583823	Msa0695880:three_prime_UTR
ACTTCCGGTGCTGATCCATT+TGG	0.420411	4_4:+65584088	None:intergenic
AACTAGACGAGAAGGAGAAA+AGG	0.420773	4_4:-65584647	Msa0695880:CDS
TTGGAGTCTTTAGCAGGTGC+AGG	0.422981	4_4:+65584163	None:intergenic
TGTGATTCAGGTGCAACTTC+CGG	0.424313	4_4:+65584073	None:intergenic
CTCAATGTTGGCAACCTCAC+GGG	0.426203	4_4:+65584336	None:intergenic
GCAGACTGCTCCTCAGTGGC+AGG	0.431231	4_4:+65583998	None:intergenic
ACAAGGTTCAAAACAGAGAA+AGG	0.447399	4_4:-65584536	Msa0695880:CDS
GTTTGTGGAACAGTTATACT+TGG	0.453267	4_4:-65584425	Msa0695880:intron
AATGAGATTAAAGATTATTG+AGG	0.464614	4_4:-65584616	Msa0695880:CDS
GAAACAGCAACTAAACCAAA+TGG	0.475248	4_4:-65584124	Msa0695880:CDS
AAGGTCATAATAGACAATAA+TGG	0.479197	4_4:+65583825	None:intergenic
GGATCAGCACCTAAACCAAA+TGG	0.488856	4_4:-65584103	Msa0695880:CDS
AAGTGGGTTTCTATGAGAAA+AGG	0.493819	4_4:-65584578	Msa0695880:CDS
GTGGCAGGAGCTTCTTTCTG+AGG	0.503664	4_4:+65584013	None:intergenic
ACTAGACGAGAAGGAGAAAA+GGG	0.504571	4_4:-65584646	Msa0695880:CDS
ATGTAACATTTGAATTTCCA+AGG	0.506294	4_4:+65583806	None:intergenic
GTCCTCCAAGGCCCAAAGCC+AGG	0.509150	4_4:-65584268	Msa0695880:CDS
TTAGCAGGTGCAGGTGGAGG+AGG	0.510354	4_4:+65584172	None:intergenic
CCAAAGGATGCTGCCAATAA+CGG	0.510873	4_4:-65584049	Msa0695880:CDS
ATATCTGCCGCATCCTAGAA+AGG	0.513686	4_4:+65584233	None:intergenic
TCTTTAGCAGGTGCAGGTGG+AGG	0.524857	4_4:+65584169	None:intergenic
CAAGGTTCAAAACAGAGAAA+GGG	0.537446	4_4:-65584535	Msa0695880:CDS
TTGGAAATTCAAATGTTACA+TGG	0.538799	4_4:-65583804	Msa0695880:three_prime_UTR
TCTCAATGTTGGCAACCTCA+CGG	0.539692	4_4:+65584335	None:intergenic
CACCTGCTAAAGACTCCAAA+GGG	0.547927	4_4:-65584159	Msa0695880:CDS
GAGTCTTTAGCAGGTGCAGG+TGG	0.551285	4_4:+65584166	None:intergenic
TGCTATTCAACTAGACGAGA+AGG	0.554504	4_4:-65584655	Msa0695880:CDS
TCAAAACAGAGAAAGGGAAA+AGG	0.555817	4_4:-65584529	Msa0695880:intron
GCCAACATTGAGAAGAAAAG+AGG	0.561154	4_4:-65584325	Msa0695880:CDS
AAAGATTATTGAGGAAGCTG+AGG	0.562392	4_4:-65584607	Msa0695880:CDS
GAAGCTGAGGATTACAAAGT+GGG	0.570600	4_4:-65584594	Msa0695880:CDS
AAATTACTGGAAAGCAATTG+GGG	0.589625	4_4:-65584368	Msa0695880:CDS
CCTTGGAGGACAGTAACTGA+TGG	0.599991	4_4:+65584280	None:intergenic
CCACCGACCTTTCTAGGATG+CGG	0.602155	4_4:-65584240	Msa0695880:CDS
TGCACCTGAATCACAACCAA+AGG	0.604455	4_4:-65584065	Msa0695880:CDS
GGAGGAGGAATCATGTGAAG+TGG	0.606489	4_4:+65584187	None:intergenic
TGCTAAAGACTCCAAAGGGA+AGG	0.606563	4_4:-65584155	Msa0695880:CDS
CTGCCGCATCCTAGAAAGGT+CGG	0.609710	4_4:+65584237	None:intergenic
GGAAGCTGAGGATTACAAAG+TGG	0.610216	4_4:-65584595	Msa0695880:CDS
CGCATCCTAGAAAGGTCGGT+GGG	0.610689	4_4:+65584241	None:intergenic
TCAATGTTGGCAACCTCACG+GGG	0.611587	4_4:+65584337	None:intergenic
CCATCAGTTACTGTCCTCCA+AGG	0.615544	4_4:-65584280	Msa0695880:CDS
CCGCATCCTAGAAAGGTCGG+TGG	0.616621	4_4:+65584240	None:intergenic
TAAACCAAATGGATCAGCAC+CGG	0.618396	4_4:-65584092	Msa0695880:CDS
AAAGACTCCAAAGGGAAGGA+CGG	0.629704	4_4:-65584151	Msa0695880:CDS
GCACCTGCTAAAGACTCCAA+AGG	0.630783	4_4:-65584160	Msa0695880:CDS
TTAATGATTGAAATAAAATG+CGG	0.669839	4_4:+65583867	None:intergenic
GAAAGAAGCTCCTGCCACTG+AGG	0.676516	4_4:-65584008	Msa0695880:CDS
TGCAGCAGACTGCTCCTCAG+TGG	0.680257	4_4:+65583994	None:intergenic
GGAGGAATCATGTGAAGTGG+TGG	0.685796	4_4:+65584190	None:intergenic
TGGGGAGATAATTCCCCGTG+AGG	0.688947	4_4:-65584350	Msa0695880:CDS
GCTCAATGTTGAGACAAACA+AGG	0.723788	4_4:-65584553	Msa0695880:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATCTCTAAAAATTAAAAGAA+CGG	+	chr4_4:65584020-65584039	None:intergenic	15.0%
!!	TTAATGATTGAAATAAAATG+CGG	+	chr4_4:65584608-65584627	None:intergenic	15.0%
!!!	ATCTCTAAAAATTAAAAGAA+CGG	+	chr4_4:65584020-65584039	None:intergenic	15.0%
!!	TTAATGATTGAAATAAAATG+CGG	+	chr4_4:65584608-65584627	None:intergenic	15.0%
!!	AATGAGATTAAAGATTATTG+AGG	-	chr4_4:65583856-65583875	Msa0695880:three_prime_UTR	20.0%
!!!	GTAAAAAGTAATGATAATGT+AGG	+	chr4_4:65583982-65584001	None:intergenic	20.0%
!!	AAAAAAAGGTTAAAAATGCA+GGG	+	chr4_4:65584554-65584573	None:intergenic	20.0%
!!	AAAAAAAAGGTTAAAAATGC+AGG	+	chr4_4:65584555-65584574	None:intergenic	20.0%
!!!	GCATTTTATTTCAATCATTA+AGG	-	chr4_4:65584607-65584626	Msa0695880:CDS	20.0%
!!	AATGAGATTAAAGATTATTG+AGG	-	chr4_4:65583856-65583875	Msa0695880:three_prime_UTR	20.0%
!!!	GTAAAAAGTAATGATAATGT+AGG	+	chr4_4:65583982-65584001	None:intergenic	20.0%
!!	AAAAAAAGGTTAAAAATGCA+GGG	+	chr4_4:65584554-65584573	None:intergenic	20.0%
!!	AAAAAAAAGGTTAAAAATGC+AGG	+	chr4_4:65584555-65584574	None:intergenic	20.0%
!!!	GCATTTTATTTCAATCATTA+AGG	-	chr4_4:65584607-65584626	Msa0695880:CDS	20.0%
!	TTTGTGAAAATTCTCTTGAT+TGG	+	chr4_4:65584073-65584092	None:intergenic	25.0%
!	AAAAATTACTGGAAAGCAAT+TGG	-	chr4_4:65584102-65584121	Msa0695880:CDS	25.0%
!	AAAATTACTGGAAAGCAATT+GGG	-	chr4_4:65584103-65584122	Msa0695880:CDS	25.0%
!	AAAAAAGGTTAAAAATGCAG+GGG	+	chr4_4:65584553-65584572	None:intergenic	25.0%
!!	ACTAAAAGCATGCAAAAAAA+AGG	+	chr4_4:65584568-65584587	None:intergenic	25.0%
!	AAGGTCATAATAGACAATAA+TGG	+	chr4_4:65584650-65584669	None:intergenic	25.0%
!	ATTATTGTCTATTATGACCT+TGG	-	chr4_4:65584649-65584668	Msa0695880:CDS	25.0%
!	ATGTAACATTTGAATTTCCA+AGG	+	chr4_4:65584669-65584688	None:intergenic	25.0%
!	TTGGAAATTCAAATGTTACA+TGG	-	chr4_4:65584668-65584687	Msa0695880:CDS	25.0%
!	TTTGTGAAAATTCTCTTGAT+TGG	+	chr4_4:65584073-65584092	None:intergenic	25.0%
!	AAAAATTACTGGAAAGCAAT+TGG	-	chr4_4:65584102-65584121	Msa0695880:CDS	25.0%
!	AAAATTACTGGAAAGCAATT+GGG	-	chr4_4:65584103-65584122	Msa0695880:CDS	25.0%
!	AAAAAAGGTTAAAAATGCAG+GGG	+	chr4_4:65584553-65584572	None:intergenic	25.0%
!!	ACTAAAAGCATGCAAAAAAA+AGG	+	chr4_4:65584568-65584587	None:intergenic	25.0%
!	AAGGTCATAATAGACAATAA+TGG	+	chr4_4:65584650-65584669	None:intergenic	25.0%
!	ATTATTGTCTATTATGACCT+TGG	-	chr4_4:65584649-65584668	Msa0695880:CDS	25.0%
!	ATGTAACATTTGAATTTCCA+AGG	+	chr4_4:65584669-65584688	None:intergenic	25.0%
!	TTGGAAATTCAAATGTTACA+TGG	-	chr4_4:65584668-65584687	Msa0695880:CDS	25.0%
	TTAGAGATGAACTATGTTTG+TGG	-	chr4_4:65584032-65584051	Msa0695880:CDS	30.0%
!	TCAAGAGAATTTTCACAAAG+AGG	-	chr4_4:65584074-65584093	Msa0695880:CDS	30.0%
	AAATTACTGGAAAGCAATTG+GGG	-	chr4_4:65584104-65584123	Msa0695880:CDS	30.0%
!!!	TTGCATGCTTTTAGTTTGTA+TGG	-	chr4_4:65584573-65584592	Msa0695880:CDS	30.0%
	TTAGAGATGAACTATGTTTG+TGG	-	chr4_4:65584032-65584051	Msa0695880:CDS	30.0%
!	TCAAGAGAATTTTCACAAAG+AGG	-	chr4_4:65584074-65584093	Msa0695880:CDS	30.0%
	AAATTACTGGAAAGCAATTG+GGG	-	chr4_4:65584104-65584123	Msa0695880:CDS	30.0%
!!!	TTGCATGCTTTTAGTTTGTA+TGG	-	chr4_4:65584573-65584592	Msa0695880:CDS	30.0%
	AAAGATTATTGAGGAAGCTG+AGG	-	chr4_4:65583865-65583884	Msa0695880:three_prime_UTR	35.0%
!	AAGTGGGTTTCTATGAGAAA+AGG	-	chr4_4:65583894-65583913	Msa0695880:three_prime_UTR	35.0%
	ACAAGGTTCAAAACAGAGAA+AGG	-	chr4_4:65583936-65583955	Msa0695880:three_prime_UTR	35.0%
	CAAGGTTCAAAACAGAGAAA+GGG	-	chr4_4:65583937-65583956	Msa0695880:three_prime_UTR	35.0%
	TCAAAACAGAGAAAGGGAAA+AGG	-	chr4_4:65583943-65583962	Msa0695880:three_prime_UTR	35.0%
	GTTTGTGGAACAGTTATACT+TGG	-	chr4_4:65584047-65584066	Msa0695880:CDS	35.0%
	AAGAGGCTGACAAAAATTAC+TGG	-	chr4_4:65584091-65584110	Msa0695880:CDS	35.0%
	TGAGAAGAAAAGAGGCAAAA+AGG	-	chr4_4:65584155-65584174	Msa0695880:CDS	35.0%
	GAAACAGCAACTAAACCAAA+TGG	-	chr4_4:65584348-65584367	Msa0695880:CDS	35.0%
	TGAATCTACAGTACCGTTAT+TGG	+	chr4_4:65584439-65584458	None:intergenic	35.0%
	AAAGATTATTGAGGAAGCTG+AGG	-	chr4_4:65583865-65583884	Msa0695880:three_prime_UTR	35.0%
!	AAGTGGGTTTCTATGAGAAA+AGG	-	chr4_4:65583894-65583913	Msa0695880:three_prime_UTR	35.0%
	ACAAGGTTCAAAACAGAGAA+AGG	-	chr4_4:65583936-65583955	Msa0695880:three_prime_UTR	35.0%
	CAAGGTTCAAAACAGAGAAA+GGG	-	chr4_4:65583937-65583956	Msa0695880:three_prime_UTR	35.0%
	TCAAAACAGAGAAAGGGAAA+AGG	-	chr4_4:65583943-65583962	Msa0695880:three_prime_UTR	35.0%
	GTTTGTGGAACAGTTATACT+TGG	-	chr4_4:65584047-65584066	Msa0695880:CDS	35.0%
	AAGAGGCTGACAAAAATTAC+TGG	-	chr4_4:65584091-65584110	Msa0695880:CDS	35.0%
	TGAGAAGAAAAGAGGCAAAA+AGG	-	chr4_4:65584155-65584174	Msa0695880:CDS	35.0%
	GAAACAGCAACTAAACCAAA+TGG	-	chr4_4:65584348-65584367	Msa0695880:CDS	35.0%
	TGAATCTACAGTACCGTTAT+TGG	+	chr4_4:65584439-65584458	None:intergenic	35.0%
	TGCTATTCAACTAGACGAGA+AGG	-	chr4_4:65583817-65583836	Msa0695880:three_prime_UTR	40.0%
	AACTAGACGAGAAGGAGAAA+AGG	-	chr4_4:65583825-65583844	Msa0695880:three_prime_UTR	40.0%
	ACTAGACGAGAAGGAGAAAA+GGG	-	chr4_4:65583826-65583845	Msa0695880:three_prime_UTR	40.0%
	GAAGCTGAGGATTACAAAGT+GGG	-	chr4_4:65583878-65583897	Msa0695880:three_prime_UTR	40.0%
	GCTCAATGTTGAGACAAACA+AGG	-	chr4_4:65583919-65583938	Msa0695880:three_prime_UTR	40.0%
	GCCAACATTGAGAAGAAAAG+AGG	-	chr4_4:65584147-65584166	Msa0695880:CDS	40.0%
!	GCCTCTTTTCTTCTCAATGT+TGG	+	chr4_4:65584151-65584170	None:intergenic	40.0%
	GAAAAGAGGCAAAAAGGATC+AGG	-	chr4_4:65584161-65584180	Msa0695880:CDS	40.0%
	TAAACCAAATGGATCAGCAC+CGG	-	chr4_4:65584359-65584378	Msa0695880:CDS	40.0%
	TGCTATTCAACTAGACGAGA+AGG	-	chr4_4:65583817-65583836	Msa0695880:three_prime_UTR	40.0%
	AACTAGACGAGAAGGAGAAA+AGG	-	chr4_4:65583825-65583844	Msa0695880:three_prime_UTR	40.0%
	ACTAGACGAGAAGGAGAAAA+GGG	-	chr4_4:65583826-65583845	Msa0695880:three_prime_UTR	40.0%
	GAAGCTGAGGATTACAAAGT+GGG	-	chr4_4:65583878-65583897	Msa0695880:three_prime_UTR	40.0%
	GCTCAATGTTGAGACAAACA+AGG	-	chr4_4:65583919-65583938	Msa0695880:three_prime_UTR	40.0%
	GCCAACATTGAGAAGAAAAG+AGG	-	chr4_4:65584147-65584166	Msa0695880:CDS	40.0%
!	GCCTCTTTTCTTCTCAATGT+TGG	+	chr4_4:65584151-65584170	None:intergenic	40.0%
	GAAAAGAGGCAAAAAGGATC+AGG	-	chr4_4:65584161-65584180	Msa0695880:CDS	40.0%
	TAAACCAAATGGATCAGCAC+CGG	-	chr4_4:65584359-65584378	Msa0695880:CDS	40.0%
	GGAAGCTGAGGATTACAAAG+TGG	-	chr4_4:65583877-65583896	Msa0695880:three_prime_UTR	45.0%
	TCTCAATGTTGGCAACCTCA+CGG	+	chr4_4:65584140-65584159	None:intergenic	45.0%
	ATATCTGCCGCATCCTAGAA+AGG	+	chr4_4:65584242-65584261	None:intergenic	45.0%
	CACCTGCTAAAGACTCCAAA+GGG	-	chr4_4:65584313-65584332	Msa0695880:CDS	45.0%
!!	TTCCCTTTGGAGTCTTTAGC+AGG	+	chr4_4:65584318-65584337	None:intergenic	45.0%
	TGCTAAAGACTCCAAAGGGA+AGG	-	chr4_4:65584317-65584336	Msa0695880:CDS	45.0%
	AAAGACTCCAAAGGGAAGGA+CGG	-	chr4_4:65584321-65584340	Msa0695880:CDS	45.0%
!	TTCTTTTCCGTCCTTCCCTT+TGG	+	chr4_4:65584331-65584350	None:intergenic	45.0%
!!	GGTTTAGGTGCTGATCCATT+TGG	+	chr4_4:65584366-65584385	None:intergenic	45.0%
	GGATCAGCACCTAAACCAAA+TGG	-	chr4_4:65584369-65584388	Msa0695880:CDS	45.0%
!!	GGTGCTGATCCATTTGGTTT+AGG	+	chr4_4:65584360-65584379	None:intergenic	45.0%
	TGTGATTCAGGTGCAACTTC+CGG	+	chr4_4:65584402-65584421	None:intergenic	45.0%
	TGCACCTGAATCACAACCAA+AGG	-	chr4_4:65584407-65584426	Msa0695880:CDS	45.0%
	GCATCCTTTGGTTGTGATTC+AGG	+	chr4_4:65584414-65584433	None:intergenic	45.0%
	CCAAAGGATGCTGCCAATAA+CGG	-	chr4_4:65584423-65584442	Msa0695880:intron	45.0%
	GGAAGCTGAGGATTACAAAG+TGG	-	chr4_4:65583877-65583896	Msa0695880:three_prime_UTR	45.0%
	TCTCAATGTTGGCAACCTCA+CGG	+	chr4_4:65584140-65584159	None:intergenic	45.0%
	ATATCTGCCGCATCCTAGAA+AGG	+	chr4_4:65584242-65584261	None:intergenic	45.0%
	CACCTGCTAAAGACTCCAAA+GGG	-	chr4_4:65584313-65584332	Msa0695880:CDS	45.0%
!!	TTCCCTTTGGAGTCTTTAGC+AGG	+	chr4_4:65584318-65584337	None:intergenic	45.0%
	TGCTAAAGACTCCAAAGGGA+AGG	-	chr4_4:65584317-65584336	Msa0695880:CDS	45.0%
	AAAGACTCCAAAGGGAAGGA+CGG	-	chr4_4:65584321-65584340	Msa0695880:CDS	45.0%
!	TTCTTTTCCGTCCTTCCCTT+TGG	+	chr4_4:65584331-65584350	None:intergenic	45.0%
!!	GGTTTAGGTGCTGATCCATT+TGG	+	chr4_4:65584366-65584385	None:intergenic	45.0%
	GGATCAGCACCTAAACCAAA+TGG	-	chr4_4:65584369-65584388	Msa0695880:CDS	45.0%
!!	GGTGCTGATCCATTTGGTTT+AGG	+	chr4_4:65584360-65584379	None:intergenic	45.0%
	TGTGATTCAGGTGCAACTTC+CGG	+	chr4_4:65584402-65584421	None:intergenic	45.0%
	TGCACCTGAATCACAACCAA+AGG	-	chr4_4:65584407-65584426	Msa0695880:CDS	45.0%
	GCATCCTTTGGTTGTGATTC+AGG	+	chr4_4:65584414-65584433	None:intergenic	45.0%
	CCAAAGGATGCTGCCAATAA+CGG	-	chr4_4:65584423-65584442	Msa0695880:intron	45.0%
	TCAATGTTGGCAACCTCACG+GGG	+	chr4_4:65584138-65584157	None:intergenic	50.0%
	CTCAATGTTGGCAACCTCAC+GGG	+	chr4_4:65584139-65584158	None:intergenic	50.0%
	CCTTGGAGGACAGTAACTGA+TGG	+	chr4_4:65584195-65584214	None:intergenic	50.0%
	CCATCAGTTACTGTCCTCCA+AGG	-	chr4_4:65584192-65584211	Msa0695880:CDS	50.0%
	GGAGGAATCATGTGAAGTGG+TGG	+	chr4_4:65584285-65584304	None:intergenic	50.0%
	GGAGGAGGAATCATGTGAAG+TGG	+	chr4_4:65584288-65584307	None:intergenic	50.0%
	TTGGAGTCTTTAGCAGGTGC+AGG	+	chr4_4:65584312-65584331	None:intergenic	50.0%
	GCACCTGCTAAAGACTCCAA+AGG	-	chr4_4:65584312-65584331	Msa0695880:CDS	50.0%
!!	ACTTCCGGTGCTGATCCATT+TGG	+	chr4_4:65584387-65584406	None:intergenic	50.0%
	CCGTTATTGGCAGCATCCTT+TGG	+	chr4_4:65584426-65584445	None:intergenic	50.0%
	TCAATGTTGGCAACCTCACG+GGG	+	chr4_4:65584138-65584157	None:intergenic	50.0%
	CTCAATGTTGGCAACCTCAC+GGG	+	chr4_4:65584139-65584158	None:intergenic	50.0%
	CCTTGGAGGACAGTAACTGA+TGG	+	chr4_4:65584195-65584214	None:intergenic	50.0%
	CCATCAGTTACTGTCCTCCA+AGG	-	chr4_4:65584192-65584211	Msa0695880:CDS	50.0%
	GGAGGAATCATGTGAAGTGG+TGG	+	chr4_4:65584285-65584304	None:intergenic	50.0%
	GGAGGAGGAATCATGTGAAG+TGG	+	chr4_4:65584288-65584307	None:intergenic	50.0%
	TTGGAGTCTTTAGCAGGTGC+AGG	+	chr4_4:65584312-65584331	None:intergenic	50.0%
	GCACCTGCTAAAGACTCCAA+AGG	-	chr4_4:65584312-65584331	Msa0695880:CDS	50.0%
!!	ACTTCCGGTGCTGATCCATT+TGG	+	chr4_4:65584387-65584406	None:intergenic	50.0%
	CCGTTATTGGCAGCATCCTT+TGG	+	chr4_4:65584426-65584445	None:intergenic	50.0%
	TGGGGAGATAATTCCCCGTG+AGG	-	chr4_4:65584122-65584141	Msa0695880:CDS	55.0%
	GCAAACCCACCGACCTTTCT+AGG	-	chr4_4:65584226-65584245	Msa0695880:CDS	55.0%
	CGCATCCTAGAAAGGTCGGT+GGG	+	chr4_4:65584234-65584253	None:intergenic	55.0%
!!	CCACCGACCTTTCTAGGATG+CGG	-	chr4_4:65584232-65584251	Msa0695880:CDS	55.0%
	CTGCCGCATCCTAGAAAGGT+CGG	+	chr4_4:65584238-65584257	None:intergenic	55.0%
	TCTTTAGCAGGTGCAGGTGG+AGG	+	chr4_4:65584306-65584325	None:intergenic	55.0%
	GAGTCTTTAGCAGGTGCAGG+TGG	+	chr4_4:65584309-65584328	None:intergenic	55.0%
	GTGGCAGGAGCTTCTTTCTG+AGG	+	chr4_4:65584462-65584481	None:intergenic	55.0%
	GAAAGAAGCTCCTGCCACTG+AGG	-	chr4_4:65584464-65584483	Msa0695880:intron	55.0%
	TGGGGAGATAATTCCCCGTG+AGG	-	chr4_4:65584122-65584141	Msa0695880:CDS	55.0%
	GCAAACCCACCGACCTTTCT+AGG	-	chr4_4:65584226-65584245	Msa0695880:CDS	55.0%
	CGCATCCTAGAAAGGTCGGT+GGG	+	chr4_4:65584234-65584253	None:intergenic	55.0%
!!	CCACCGACCTTTCTAGGATG+CGG	-	chr4_4:65584232-65584251	Msa0695880:CDS	55.0%
	CTGCCGCATCCTAGAAAGGT+CGG	+	chr4_4:65584238-65584257	None:intergenic	55.0%
	TCTTTAGCAGGTGCAGGTGG+AGG	+	chr4_4:65584306-65584325	None:intergenic	55.0%
	GAGTCTTTAGCAGGTGCAGG+TGG	+	chr4_4:65584309-65584328	None:intergenic	55.0%
	GTGGCAGGAGCTTCTTTCTG+AGG	+	chr4_4:65584462-65584481	None:intergenic	55.0%
	GAAAGAAGCTCCTGCCACTG+AGG	-	chr4_4:65584464-65584483	Msa0695880:intron	55.0%
!!	GTTTGCCTGGCTTTGGGCCT+TGG	+	chr4_4:65584212-65584231	None:intergenic	60.0%
!	CGGTGGGTTTGCCTGGCTTT+GGG	+	chr4_4:65584218-65584237	None:intergenic	60.0%
!	TCGGTGGGTTTGCCTGGCTT+TGG	+	chr4_4:65584219-65584238	None:intergenic	60.0%
!	GAAAGGTCGGTGGGTTTGCC+TGG	+	chr4_4:65584225-65584244	None:intergenic	60.0%
	CCGCATCCTAGAAAGGTCGG+TGG	+	chr4_4:65584235-65584254	None:intergenic	60.0%
	TTAGCAGGTGCAGGTGGAGG+AGG	+	chr4_4:65584303-65584322	None:intergenic	60.0%
	TGCAGCAGACTGCTCCTCAG+TGG	+	chr4_4:65584481-65584500	None:intergenic	60.0%
!!	GTTTGCCTGGCTTTGGGCCT+TGG	+	chr4_4:65584212-65584231	None:intergenic	60.0%
!	CGGTGGGTTTGCCTGGCTTT+GGG	+	chr4_4:65584218-65584237	None:intergenic	60.0%
!	TCGGTGGGTTTGCCTGGCTT+TGG	+	chr4_4:65584219-65584238	None:intergenic	60.0%
!	GAAAGGTCGGTGGGTTTGCC+TGG	+	chr4_4:65584225-65584244	None:intergenic	60.0%
	CCGCATCCTAGAAAGGTCGG+TGG	+	chr4_4:65584235-65584254	None:intergenic	60.0%
	TTAGCAGGTGCAGGTGGAGG+AGG	+	chr4_4:65584303-65584322	None:intergenic	60.0%
	TGCAGCAGACTGCTCCTCAG+TGG	+	chr4_4:65584481-65584500	None:intergenic	60.0%
	GTCCTCCAAGGCCCAAAGCC+AGG	-	chr4_4:65584204-65584223	Msa0695880:CDS	65.0%
!!	TGCCTGGCTTTGGGCCTTGG+AGG	+	chr4_4:65584209-65584228	None:intergenic	65.0%
	GCAGACTGCTCCTCAGTGGC+AGG	+	chr4_4:65584477-65584496	None:intergenic	65.0%
	GTCCTCCAAGGCCCAAAGCC+AGG	-	chr4_4:65584204-65584223	Msa0695880:CDS	65.0%
!!	TGCCTGGCTTTGGGCCTTGG+AGG	+	chr4_4:65584209-65584228	None:intergenic	65.0%
	GCAGACTGCTCCTCAGTGGC+AGG	+	chr4_4:65584477-65584496	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	65583751	65584743	65583751	ID=Msa0695880;Name=Msa0695880
chr4_4	mRNA	65583751	65584743	65583751	ID=Msa0695880-mRNA-1;Parent=Msa0695880;Name=Msa0695880-mRNA-1;_AED=0.00;_eAED=0.00;_QI=37\|1\|1\|1\|1\|1\|2\|240\|206
chr4_4	exon	65583751	65584434	65583751	ID=Msa0695880-mRNA-1:exon:18914;Parent=Msa0695880-mRNA-1
chr4_4	exon	65584530	65584743	65584530	ID=Msa0695880-mRNA-1:exon:18913;Parent=Msa0695880-mRNA-1
chr4_4	five_prime_UTR	65584707	65584743	65584707	ID=Msa0695880-mRNA-1:five_prime_utr;Parent=Msa0695880-mRNA-1
chr4_4	CDS	65584530	65584706	65584530	ID=Msa0695880-mRNA-1:cds;Parent=Msa0695880-mRNA-1
chr4_4	CDS	65583991	65584434	65583991	ID=Msa0695880-mRNA-1:cds;Parent=Msa0695880-mRNA-1
chr4_4	three_prime_UTR	65583751	65583990	65583751	ID=Msa0695880-mRNA-1:three_prime_utr;Parent=Msa0695880-mRNA-1

Gene Sequence

>Msa0695880

ATGAAAATGAATTCATTGTGCAGTCAAAATGCTATTCAACTAGACGAGAAGGAGAAAAGGGAAAAAGAAATGAGATTAAAGATTATTGAGGAAGCTGAGGATTACAAAGTGGGTTTCTATGAGAAAAGGAAGCTCAATGTTGAGACAAACAAGGTTCAAAACAGAGAAAGGGAAAAGTTATACTTGGCCAATCAAGAGAATTTTCACAAAGAGGCTGACAAAAATTACTGGAAAGCAATTGGGGAGATAATTCCCCGTGAGGTTGCCAACATTGAGAAGAAAAGAGGCAAAAAGGATCAGGATAAGAATCCATCAGTTACTGTCCTCCAAGGCCCAAAGCCAGGCAAACCCACCGACCTTTCTAGGATGCGGCAGATATTGTTAAAGCTGAAACATACGCCACCACTTCACATGATTCCTCCTCCACCTGCACCTGCTAAAGACTCCAAAGGGAAGGACGGAAAAGAAACAGCAACTAAACCAAATGGATCAGCACCTAAACCAAATGGATCAGCACCGGAAGTTGCACCTGAATCACAACCAAAGGATGCTGCCAATAACGGTACTGTAGATTCACCTCAGAAAGAAGCTCCTGCCACTGAGGAGCAGTCTGCTGCATAA

Protein sequence

>Msa0695880

MKMNSLCSQNAIQLDEKEKREKEMRLKIIEEAEDYKVGFYEKRKLNVETNKVQNREREKLYLANQENFHKEADKNYWKAIGEIIPREVANIEKKRGKKDQDKNPSVTVLQGPKPGKPTDLSRMRQILLKLKHTPPLHMIPPPPAPAKDSKGKDGKETATKPNGSAPKPNGSAPEVAPESQPKDAANNGTVDSPQKEAPATEEQSAA*