AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0354390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0354390 MtrunA17_Chr3g0090001 90.864 405 27 2 1 397 1 403 0.0 676
Msa0354390 MtrunA17_Chr3g0089951 95.000 100 5 0 244 343 1 100 1.16e-53 173
Msa0354390 MtrunA17_Chr7g0264491 35.000 300 182 1 110 396 254 553 8.49e-48 171
Msa0354390 MtrunA17_Chr3g0145921 37.131 237 149 0 161 397 335 571 3.58e-46 166
Msa0354390 MtrunA17_Chr1g0180881 31.629 313 196 3 97 396 250 557 5.74e-42 155
Msa0354390 MtrunA17_Chr4g0021031 33.333 351 192 8 68 385 149 490 2.43e-40 149
Msa0354390 MtrunA17_Chr1g0146481 33.065 248 159 2 150 396 306 547 6.03e-37 140
Msa0354390 MtrunA17_Chr3g0126401 28.405 257 177 4 145 397 261 514 4.62e-18 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0354390 AT5G13730.1 56.811 301 120 2 105 395 114 414 5.18e-112 334
Msa0354390 AT2G36990.1 32.237 304 191 2 107 396 241 543 1.53e-45 165
Msa0354390 AT1G08540.1 31.054 351 224 4 60 397 224 569 2.26e-45 165
Msa0354390 AT1G64860.1 33.235 340 200 6 68 385 154 488 5.92e-42 154
Msa0354390 AT1G64860.2 32.075 318 189 6 68 363 154 466 2.01e-34 133
Msa0354390 AT3G53920.1 32.911 237 158 1 161 396 333 569 2.99e-34 134
Msa0354390 AT5G24120.1 26.606 218 152 3 183 397 305 517 1.27e-15 79.0
Msa0354390 AT5G24120.3 26.606 218 152 3 183 397 305 517 1.27e-15 79.0
Msa0354390 AT5G24120.2 26.606 218 152 3 183 397 305 517 1.27e-15 79.0
Msa0354390 AT3G53920.2 42.308 78 45 0 161 238 333 410 1.33e-14 75.5

Find 81 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAAAGGTTGGTACAAATT+TGG 0.165763 3_1:-25540758 Msa0354390:CDS
ATAGCTCTGTCCAATGAAAT+TGG 0.295581 3_1:+25538839 None:intergenic
TCTGATTAAGATTTATGAAT+AGG 0.314242 3_1:-25538380 Msa0354390:three_prime_UTR
ACAAGGCATGATTAAAGCTT+TGG 0.334814 3_1:-25539629 Msa0354390:CDS
TATTTATAGGGAGAAAAGTA+TGG 0.343959 3_1:-25538998 Msa0354390:intron
GTTGAGGTGTGGTTTGTGTA+TGG 0.357469 3_1:+25540871 None:intergenic
GAAGCTAGAAATGCTGGAAT+TGG 0.365294 3_1:-25540667 Msa0354390:CDS
TGCTATTTCAAGGTTTACTT+TGG 0.382886 3_1:-25539952 Msa0354390:CDS
GGAACCATTGGACTTCTTCA+TGG 0.384588 3_1:-25539715 Msa0354390:CDS
AGCTTCATCCACAGCATCAT+TGG 0.391120 3_1:+25540684 None:intergenic
ATATTATACTTTGGACTCAA+TGG 0.405310 3_1:-25538552 Msa0354390:CDS
GTTGTAGGGTCTGTGACATC+AGG 0.407779 3_1:-25540526 Msa0354390:CDS
GTCTTTAGAGATGGAAAAGT+TGG 0.408480 3_1:+25540820 None:intergenic
TTCTCCGGAATCATTTCAAC+TGG 0.414074 3_1:+25538654 None:intergenic
GAGCAGACAACCAATTTCAT+TGG 0.418328 3_1:-25538849 Msa0354390:CDS
AGCTGTCTACATATGTTTAC+TGG 0.421708 3_1:-25539660 Msa0354390:CDS
CAAATTTGTACCAACCTTTG+AGG 0.425468 3_1:+25540759 None:intergenic
GGAGAAAATGTTTGAGAGAC+AGG 0.428727 3_1:-25538637 Msa0354390:CDS
AAGGGAATTATGCTATTTCA+AGG 0.430126 3_1:-25539962 Msa0354390:CDS
CACCGGTAATCTGACTAATC+TGG 0.431896 3_1:+25539597 None:intergenic
GAGATTGTAATATTATACTT+TGG 0.445378 3_1:-25538561 Msa0354390:CDS
GCATAGGAATTGATGATATG+AGG 0.447616 3_1:-25540636 Msa0354390:CDS
ATATTCAGAACAATTTCTTA+AGG 0.448190 3_1:-25540558 Msa0354390:CDS
GTCCAGATTAGTCAGATTAC+CGG 0.449365 3_1:-25539599 Msa0354390:intron
GGGACCAGTTGAAATGATTC+CGG 0.449561 3_1:-25538658 Msa0354390:CDS
CTATCTCCTCAAAAGACAAA+GGG 0.452640 3_1:+25538523 None:intergenic
TTAAGGCAGAAAGAGGTTGT+AGG 0.464002 3_1:-25540541 Msa0354390:CDS
GAGAAATTTGATCCGGATAG+AGG 0.468549 3_1:-25539688 Msa0354390:CDS
GAAAGTTGTTGAAACTATCA+AGG 0.474029 3_1:-25538500 Msa0354390:CDS
ATGATATGAGGAGGAAGAGA+AGG 0.474045 3_1:-25540624 Msa0354390:CDS
GAGAGACAGGTAATGAAGGA+AGG 0.490016 3_1:-25538624 Msa0354390:CDS
GTGGATGAAGCTAGAAATGC+TGG 0.495403 3_1:-25540673 Msa0354390:CDS
AAATTTGTACCAACCTTTGA+GGG 0.497738 3_1:+25540760 None:intergenic
CAATTTCTTAAGGCAGAAAG+AGG 0.497879 3_1:-25540548 Msa0354390:CDS
GTTTGAGAGACAGGTAATGA+AGG 0.499603 3_1:-25538628 Msa0354390:CDS
AGAGACAGGTAATGAAGGAA+GGG 0.501313 3_1:-25538623 Msa0354390:CDS
GAGAGAATCAGACAGATTCA+TGG 0.502535 3_1:-25538477 Msa0354390:CDS
TTTAACCAGGAAGGAACCAT+TGG 0.503437 3_1:-25539727 Msa0354390:intron
TGAGCTTTGTTTATGTCTCA+AGG 0.505679 3_1:-25540479 Msa0354390:intron
ACCTACTATTACACCCTCAA+AGG 0.515388 3_1:-25540773 Msa0354390:CDS
GACAGCTTACATCCTCTATC+CGG 0.518858 3_1:+25539676 None:intergenic
TGGAGCAGAGAAATTTGATC+CGG 0.520546 3_1:-25539695 Msa0354390:CDS
ACCTTTGAGGGTGTAATAGT+AGG 0.520956 3_1:+25540772 None:intergenic
TAAGGCAGAAAGAGGTTGTA+GGG 0.522827 3_1:-25540540 Msa0354390:CDS
CTGTGAAACTTGTTTCTGAA+AGG 0.523199 3_1:-25538871 Msa0354390:CDS
TATAATGCAGGAGATTATAC+CGG 0.529279 3_1:-25538679 Msa0354390:intron
TCAATCGCAACACGATATCA+AGG 0.537772 3_1:-25539846 Msa0354390:CDS
CCTATCTCCTCAAAAGACAA+AGG 0.538706 3_1:+25538522 None:intergenic
GGAATCATTTCAACTGGTCC+CGG 0.544959 3_1:+25538660 None:intergenic
TCAGCAATTTCATTATATGT+CGG 0.554776 3_1:+25538917 None:intergenic
TTGTAGGGTCTGTGACATCA+GGG 0.556165 3_1:-25540525 Msa0354390:CDS
GAATGGTGTGTCTTTAGAGA+TGG 0.559338 3_1:+25540811 None:intergenic
ATAGGGAGAAAAGTATGGAA+TGG 0.569556 3_1:-25538993 Msa0354390:intron
GAGACAGGTAATGAAGGAAG+GGG 0.571902 3_1:-25538622 Msa0354390:CDS
CATATCAAACTCGTATCTCA+AGG 0.573669 3_1:+25538331 None:intergenic
AAAGTTGTTGAAACTATCAA+GGG 0.579121 3_1:-25538499 Msa0354390:CDS
ACTATTACACCCTCAAAGGT+TGG 0.581517 3_1:-25540769 Msa0354390:CDS
AGTGATGTAAGAGACATGGT+AGG 0.592073 3_1:+25540844 None:intergenic
TGCTCCATGAAGAAGTCCAA+TGG 0.596543 3_1:+25539711 None:intergenic
TAGTGATGCATTAGTCATTG+TGG 0.597177 3_1:-25540731 Msa0354390:CDS
TAGAAATGCTGGAATTGGAA+AGG 0.601272 3_1:-25540662 Msa0354390:CDS
GGGGCAAAGATAGAAAATGA+AGG 0.606263 3_1:-25539981 Msa0354390:CDS
AAGCATTCAAGATCTCATCC+AGG 0.606664 3_1:-25539814 Msa0354390:intron
TGTCTACATATGTTTACTGG+TGG 0.613609 3_1:-25539657 Msa0354390:CDS
GTTTACTGGTGGATTAAACA+AGG 0.614224 3_1:-25539646 Msa0354390:CDS
GGAATTGGAAAGGAGTGCAT+AGG 0.618538 3_1:-25540652 Msa0354390:CDS
GTGATGTAAGAGACATGGTA+GGG 0.618561 3_1:+25540845 None:intergenic
TGGAAGTGATGTAAGAGACA+TGG 0.620101 3_1:+25540840 None:intergenic
TCAGAGCAACTTAATACTGA+AGG 0.620679 3_1:-25538810 Msa0354390:intron
TGGTAGGGAATGTTGAGGTG+TGG 0.623838 3_1:+25540860 None:intergenic
AGATTAGCTCGTGATTATCG+TGG 0.626253 3_1:-25539879 Msa0354390:CDS
GCAACACGATATCAAGGCAA+AGG 0.632504 3_1:-25539840 Msa0354390:CDS
ATAATGCAGGAGATTATACC+GGG 0.633370 3_1:-25538678 Msa0354390:intron
GGGCAAAGATAGAAAATGAA+GGG 0.633655 3_1:-25539980 Msa0354390:CDS
TGCATTAGCCAATGATGCTG+TGG 0.639996 3_1:-25540692 Msa0354390:CDS
GACATATAATGAAATTGCTG+AGG 0.644481 3_1:-25538915 Msa0354390:CDS
TAGGAATTGATGATATGAGG+AGG 0.652900 3_1:-25540633 Msa0354390:CDS
AGACATGGTAGGGAATGTTG+AGG 0.653761 3_1:+25540855 None:intergenic
TCTTAAGACGAAGACTGAGG+CGG 0.681542 3_1:-25538943 Msa0354390:CDS
TATCTCCTCAAAAGACAAAG+GGG 0.686203 3_1:+25538524 None:intergenic
ATGTCTTAAGACGAAGACTG+AGG 0.725315 3_1:-25538946 Msa0354390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTATAACATTTTTTG+GGG - chr3_1:25539593-25539612 Msa0354390:intron 10.0%
!! TAAAAATAATATGAAAAGTG+TGG - chr3_1:25538902-25538921 Msa0354390:CDS 15.0%
!! AAAATTTGCATTATACAAAA+TGG + chr3_1:25539082-25539101 None:intergenic 15.0%
!!! TTTTTTATAACATTTTTTGG+GGG - chr3_1:25539594-25539613 Msa0354390:intron 15.0%
!! AGAAAAAGAAGGAAAAATTT+GGG - chr3_1:25538557-25538576 Msa0354390:CDS 20.0%
!! ATATTCAGAACAATTTCTTA+AGG - chr3_1:25538600-25538619 Msa0354390:CDS 20.0%
!! AATGGTTAATGAATATAACA+TGG + chr3_1:25538987-25539006 None:intergenic 20.0%
!!! ATTTGTTAAAGTTTCTCATT+AGG - chr3_1:25539396-25539415 Msa0354390:intron 20.0%
!! TAAAAAAAAAATTGTCTCAC+CGG + chr3_1:25539581-25539600 None:intergenic 20.0%
!!! ACTATTTTACAACTATTCTA+AGG - chr3_1:25539658-25539677 Msa0354390:CDS 20.0%
!!! TTTATTTTTCCGGTTTATAA+CGG + chr3_1:25540021-25540040 None:intergenic 20.0%
!! ATAAACCGGAAAAATAAAAT+TGG - chr3_1:25540023-25540042 Msa0354390:intron 20.0%
!!! AGTAACCAATTTTATTTTTC+CGG + chr3_1:25540031-25540050 None:intergenic 20.0%
!! AACTGTTTATTATGAATGTT+TGG - chr3_1:25540128-25540147 Msa0354390:intron 20.0%
!!! TTGGTTAGTTTGTTATTTAT+AGG - chr3_1:25540147-25540166 Msa0354390:intron 20.0%
!!! TGGTTAGTTTGTTATTTATA+GGG - chr3_1:25540148-25540167 Msa0354390:intron 20.0%
!!! TACAATTTCATTCGTATTTT+AGG - chr3_1:25540374-25540393 Msa0354390:intron 20.0%
!! GAGATTGTAATATTATACTT+TGG - chr3_1:25540597-25540616 Msa0354390:CDS 20.0%
!! TCTGATTAAGATTTATGAAT+AGG - chr3_1:25540778-25540797 Msa0354390:CDS 20.0%
!! GTAAATTTTGTTGAAGTGAA+TGG + chr3_1:25538367-25538386 None:intergenic 25.0%
! GAGAAAAAGAAGGAAAAATT+TGG - chr3_1:25538556-25538575 Msa0354390:CDS 25.0%
! GTTCTTAAGATTACAATTCT+AGG + chr3_1:25538867-25538886 None:intergenic 25.0%
! CTTTAATTATGCTCAATGAA+TGG + chr3_1:25539005-25539024 None:intergenic 25.0%
!! CATTGTTTAGTGGATAAATT+TGG + chr3_1:25539042-25539061 None:intergenic 25.0%
! ATAAACAGATCATTGTTTAG+TGG + chr3_1:25539052-25539071 None:intergenic 25.0%
!! TATAATGCAAATTTTCTTGC+TGG - chr3_1:25539087-25539106 Msa0354390:intron 25.0%
!!! GCATTTTAATTCATTTAACC+AGG - chr3_1:25539418-25539437 Msa0354390:intron 25.0%
! TTTAATTCATTTAACCAGGA+AGG - chr3_1:25539422-25539441 Msa0354390:intron 25.0%
! AACCAATCATATGCTAAATT+TGG - chr3_1:25539810-25539829 Msa0354390:intron 25.0%
! TATTTATAGGGAGAAAAGTA+TGG - chr3_1:25540160-25540179 Msa0354390:intron 25.0%
! TCAGCAATTTCATTATATGT+CGG + chr3_1:25540244-25540263 None:intergenic 25.0%
! TGTTTACTATGATATAATGC+AGG - chr3_1:25540467-25540486 Msa0354390:intron 25.0%
! ATATTATACTTTGGACTCAA+TGG - chr3_1:25540606-25540625 Msa0354390:CDS 25.0%
! AAAGTTGTTGAAACTATCAA+GGG - chr3_1:25540659-25540678 Msa0354390:CDS 25.0%
AAATTTGTACCAACCTTTGA+GGG + chr3_1:25538401-25538420 None:intergenic 30.0%
! AAGGAAAAATTTGGGATGTA+TGG - chr3_1:25538565-25538584 Msa0354390:CDS 30.0%
! GTTAACGATGTTTAAAATCG+TGG - chr3_1:25538924-25538943 Msa0354390:CDS 30.0%
ATTCATATTCCATCACTAAC+AGG - chr3_1:25539121-25539140 Msa0354390:intron 30.0%
TTTGTGTGTTGAATAACAAC+AGG - chr3_1:25539152-25539171 Msa0354390:intron 30.0%
!! AAGGGAATTATGCTATTTCA+AGG - chr3_1:25539196-25539215 Msa0354390:intron 30.0%
!! TGCTATTTCAAGGTTTACTT+TGG - chr3_1:25539206-25539225 Msa0354390:intron 30.0%
CACCAAATTTAGCATATGAT+TGG + chr3_1:25539815-25539834 None:intergenic 30.0%
CGTGAATTGTGAAAACTTAA+CGG + chr3_1:25539850-25539869 None:intergenic 30.0%
! TTGATTTGACGAAGTTAGTT+AGG - chr3_1:25539885-25539904 Msa0354390:CDS 30.0%
! ACTTTTACTGACGTATGTTT+CGG + chr3_1:25539954-25539973 None:intergenic 30.0%
AGTGATATACCGTTATAAAC+CGG - chr3_1:25540009-25540028 Msa0354390:intron 30.0%
! CACTATTTTCATAGTCTCTT+TGG - chr3_1:25540054-25540073 Msa0354390:intron 30.0%
GACATATAATGAAATTGCTG+AGG - chr3_1:25540243-25540262 Msa0354390:intron 30.0%
TATAATGCAGGAGATTATAC+CGG - chr3_1:25540479-25540498 Msa0354390:intron 30.0%
GAAAGTTGTTGAAACTATCA+AGG - chr3_1:25540658-25540677 Msa0354390:CDS 30.0%
! GTCTTTAGAGATGGAAAAGT+TGG + chr3_1:25538341-25538360 None:intergenic 35.0%
CAAATTTGTACCAACCTTTG+AGG + chr3_1:25538402-25538421 None:intergenic 35.0%
!! CTCAAAGGTTGGTACAAATT+TGG - chr3_1:25538400-25538419 Msa0354390:exon 35.0%
TAGTGATGCATTAGTCATTG+TGG - chr3_1:25538427-25538446 Msa0354390:CDS 35.0%
TAGAAATGCTGGAATTGGAA+AGG - chr3_1:25538496-25538515 Msa0354390:CDS 35.0%
! GCATAGGAATTGATGATATG+AGG - chr3_1:25538522-25538541 Msa0354390:CDS 35.0%
! TAGGAATTGATGATATGAGG+AGG - chr3_1:25538525-25538544 Msa0354390:CDS 35.0%
! GAAAAATTTGGGATGTATGG+TGG - chr3_1:25538568-25538587 Msa0354390:CDS 35.0%
CAATTTCTTAAGGCAGAAAG+AGG - chr3_1:25538610-25538629 Msa0354390:CDS 35.0%
!!! GTTTTTGAGTTCAACAGAAG+AGG - chr3_1:25538655-25538674 Msa0354390:CDS 35.0%
!! TGAGCTTTGTTTATGTCTCA+AGG - chr3_1:25538679-25538698 Msa0354390:intron 35.0%
!! ATTTTAGTCCCTAAAGTTGC+AGG - chr3_1:25538751-25538770 Msa0354390:intron 35.0%
TCGTGGTTAATTGTGTTATG+TGG - chr3_1:25538941-25538960 Msa0354390:CDS 35.0%
ATGCATAATCCTGTTAGTGA+TGG + chr3_1:25539133-25539152 None:intergenic 35.0%
TGTGTTGAATAACAACAGGA+GGG - chr3_1:25539156-25539175 Msa0354390:intron 35.0%
GGGCAAAGATAGAAAATGAA+GGG - chr3_1:25539178-25539197 Msa0354390:intron 35.0%
AGCTGTCTACATATGTTTAC+TGG - chr3_1:25539498-25539517 Msa0354390:intron 35.0%
TGTCTACATATGTTTACTGG+TGG - chr3_1:25539501-25539520 Msa0354390:intron 35.0%
!! GTTTACTGGTGGATTAAACA+AGG - chr3_1:25539512-25539531 Msa0354390:intron 35.0%
ACAAGGCATGATTAAAGCTT+TGG - chr3_1:25539529-25539548 Msa0354390:intron 35.0%
!! GATTTTAACCTTGAGCAACA+TGG - chr3_1:25539768-25539787 Msa0354390:intron 35.0%
AAAAACAACCATGTTGCTCA+AGG + chr3_1:25539779-25539798 None:intergenic 35.0%
TTGACGAAGTTAGTTAGGTA+TGG - chr3_1:25539890-25539909 Msa0354390:CDS 35.0%
! ATAGGGAGAAAAGTATGGAA+TGG - chr3_1:25540165-25540184 Msa0354390:intron 35.0%
!! CTGTGAAACTTGTTTCTGAA+AGG - chr3_1:25540287-25540306 Msa0354390:intron 35.0%
! ATAGCTCTGTCCAATGAAAT+TGG + chr3_1:25540322-25540341 None:intergenic 35.0%
TCAGAGCAACTTAATACTGA+AGG - chr3_1:25540348-25540367 Msa0354390:intron 35.0%
ATAATGCAGGAGATTATACC+GGG - chr3_1:25540480-25540499 Msa0354390:CDS 35.0%
! TGTCTCTCAAACATTTTCTC+CGG + chr3_1:25540522-25540541 None:intergenic 35.0%
TATCTCCTCAAAAGACAAAG+GGG + chr3_1:25540637-25540656 None:intergenic 35.0%
CTATCTCCTCAAAAGACAAA+GGG + chr3_1:25540638-25540657 None:intergenic 35.0%
CATATCAAACTCGTATCTCA+AGG + chr3_1:25540830-25540849 None:intergenic 35.0%
GTGATGTAAGAGACATGGTA+GGG + chr3_1:25538316-25538335 None:intergenic 40.0%
AGTGATGTAAGAGACATGGT+AGG + chr3_1:25538317-25538336 None:intergenic 40.0%
TGGAAGTGATGTAAGAGACA+TGG + chr3_1:25538321-25538340 None:intergenic 40.0%
! GAATGGTGTGTCTTTAGAGA+TGG + chr3_1:25538350-25538369 None:intergenic 40.0%
ACCTACTATTACACCCTCAA+AGG - chr3_1:25538385-25538404 Msa0354390:three_prime_UTR 40.0%
! ACCTTTGAGGGTGTAATAGT+AGG + chr3_1:25538389-25538408 None:intergenic 40.0%
ACTATTACACCCTCAAAGGT+TGG - chr3_1:25538389-25538408 Msa0354390:three_prime_UTR 40.0%
GAAGCTAGAAATGCTGGAAT+TGG - chr3_1:25538491-25538510 Msa0354390:CDS 40.0%
ATGATATGAGGAGGAAGAGA+AGG - chr3_1:25538534-25538553 Msa0354390:CDS 40.0%
GGAAGAGAAGGAGAAAAAGA+AGG - chr3_1:25538546-25538565 Msa0354390:CDS 40.0%
TTAAGGCAGAAAGAGGTTGT+AGG - chr3_1:25538617-25538636 Msa0354390:CDS 40.0%
TAAGGCAGAAAGAGGTTGTA+GGG - chr3_1:25538618-25538637 Msa0354390:CDS 40.0%
GACACTCTTAATTCAGTCTC+TGG + chr3_1:25538845-25538864 None:intergenic 40.0%
GTGTGTTGAATAACAACAGG+AGG - chr3_1:25539155-25539174 Msa0354390:intron 40.0%
GTGTTGAATAACAACAGGAG+GGG - chr3_1:25539157-25539176 Msa0354390:intron 40.0%
TGTTGAATAACAACAGGAGG+GGG - chr3_1:25539158-25539177 Msa0354390:intron 40.0%
GGGGCAAAGATAGAAAATGA+AGG - chr3_1:25539177-25539196 Msa0354390:intron 40.0%
! AGATTAGCTCGTGATTATCG+TGG - chr3_1:25539279-25539298 Msa0354390:intron 40.0%
TCAATCGCAACACGATATCA+AGG - chr3_1:25539312-25539331 Msa0354390:intron 40.0%
AAGCATTCAAGATCTCATCC+AGG - chr3_1:25539344-25539363 Msa0354390:intron 40.0%
GAAATGTGTTAGTATGCACC+TGG + chr3_1:25539365-25539384 None:intergenic 40.0%
TTTAACCAGGAAGGAACCAT+TGG - chr3_1:25539431-25539450 Msa0354390:intron 40.0%
TGGAGCAGAGAAATTTGATC+CGG - chr3_1:25539463-25539482 Msa0354390:intron 40.0%
GAGAAATTTGATCCGGATAG+AGG - chr3_1:25539470-25539489 Msa0354390:intron 40.0%
! GTCCAGATTAGTCAGATTAC+CGG - chr3_1:25539559-25539578 Msa0354390:intron 40.0%
!!! TATAACATTTTTTGGGGGCG+AGG - chr3_1:25539599-25539618 Msa0354390:intron 40.0%
!!! ATAACATTTTTTGGGGGCGA+GGG - chr3_1:25539600-25539619 Msa0354390:CDS 40.0%
TTAGTTAGGTATGGTGCATG+CGG - chr3_1:25539899-25539918 Msa0354390:CDS 40.0%
AATGGTTGCAAAAATCGCAG+AGG - chr3_1:25540183-25540202 Msa0354390:intron 40.0%
ATGTCTTAAGACGAAGACTG+AGG - chr3_1:25540212-25540231 Msa0354390:intron 40.0%
GAGCAGACAACCAATTTCAT+TGG - chr3_1:25540309-25540328 Msa0354390:intron 40.0%
TTCTCCGGAATCATTTCAAC+TGG + chr3_1:25540507-25540526 None:intergenic 40.0%
GGAGAAAATGTTTGAGAGAC+AGG - chr3_1:25540521-25540540 Msa0354390:CDS 40.0%
GTTTGAGAGACAGGTAATGA+AGG - chr3_1:25540530-25540549 Msa0354390:CDS 40.0%
AGAGACAGGTAATGAAGGAA+GGG - chr3_1:25540535-25540554 Msa0354390:CDS 40.0%
CCTATCTCCTCAAAAGACAA+AGG + chr3_1:25540639-25540658 None:intergenic 40.0%
!! CCTTTGTCTTTTGAGGAGAT+AGG - chr3_1:25540636-25540655 Msa0354390:CDS 40.0%
GAGAGAATCAGACAGATTCA+TGG - chr3_1:25540681-25540700 Msa0354390:CDS 40.0%
! GTTGAGGTGTGGTTTGTGTA+TGG + chr3_1:25538290-25538309 None:intergenic 45.0%
AGACATGGTAGGGAATGTTG+AGG + chr3_1:25538306-25538325 None:intergenic 45.0%
TGCATTAGCCAATGATGCTG+TGG - chr3_1:25538466-25538485 Msa0354390:CDS 45.0%
AGCTTCATCCACAGCATCAT+TGG + chr3_1:25538477-25538496 None:intergenic 45.0%
GTGGATGAAGCTAGAAATGC+TGG - chr3_1:25538485-25538504 Msa0354390:CDS 45.0%
! GGAATTGGAAAGGAGTGCAT+AGG - chr3_1:25538506-25538525 Msa0354390:CDS 45.0%
TTGTAGGGTCTGTGACATCA+GGG - chr3_1:25538633-25538652 Msa0354390:CDS 45.0%
GACTGATGCCTGCAACTTTA+GGG + chr3_1:25538762-25538781 None:intergenic 45.0%
CTAAAGTTGCAGGCATCAGT+CGG - chr3_1:25538761-25538780 Msa0354390:intron 45.0%
GCAACACGATATCAAGGCAA+AGG - chr3_1:25539318-25539337 Msa0354390:intron 45.0%
GGAACCATTGGACTTCTTCA+TGG - chr3_1:25539443-25539462 Msa0354390:intron 45.0%
TGCTCCATGAAGAAGTCCAA+TGG + chr3_1:25539450-25539469 None:intergenic 45.0%
GACAGCTTACATCCTCTATC+CGG + chr3_1:25539485-25539504 None:intergenic 45.0%
CACCGGTAATCTGACTAATC+TGG + chr3_1:25539564-25539583 None:intergenic 45.0%
!!! TAACATTTTTTGGGGGCGAG+GGG - chr3_1:25539601-25539620 Msa0354390:CDS 45.0%
TATTTGAACCGCGTCTCTTG+AGG - chr3_1:25539682-25539701 Msa0354390:CDS 45.0%
TCTTAAGACGAAGACTGAGG+CGG - chr3_1:25540215-25540234 Msa0354390:intron 45.0%
GGAATCATTTCAACTGGTCC+CGG + chr3_1:25540501-25540520 None:intergenic 45.0%
GGGACCAGTTGAAATGATTC+CGG - chr3_1:25540500-25540519 Msa0354390:CDS 45.0%
GAGAGACAGGTAATGAAGGA+AGG - chr3_1:25540534-25540553 Msa0354390:CDS 45.0%
GAGACAGGTAATGAAGGAAG+GGG - chr3_1:25540536-25540555 Msa0354390:CDS 45.0%
! AGAGACCCCTTTGTCTTTTG+AGG - chr3_1:25540629-25540648 Msa0354390:CDS 45.0%
!!! TTTTTTTTTATAACATTTTT+TGG - chr3_1:25539591-25539610 Msa0354390:intron 5.0%
!!! TTTTTTTTATAACATTTTTT+GGG - chr3_1:25539592-25539611 Msa0354390:intron 5.0%
TGGTAGGGAATGTTGAGGTG+TGG + chr3_1:25538301-25538320 None:intergenic 50.0%
GTTGTAGGGTCTGTGACATC+AGG - chr3_1:25538632-25538651 Msa0354390:CDS 50.0%
CGACTGATGCCTGCAACTTT+AGG + chr3_1:25538763-25538782 None:intergenic 50.0%
GAAGTCCAATGGTTCCTTCC+TGG + chr3_1:25539439-25539458 None:intergenic 50.0%
CCTTGTAACCTCAAGAGACG+CGG + chr3_1:25539693-25539712 None:intergenic 50.0%
CCGCGTCTCTTGAGGTTACA+AGG - chr3_1:25539690-25539709 Msa0354390:CDS 55.0%
GTTAGGTATGGTGCATGCGG+AGG - chr3_1:25539902-25539921 Msa0354390:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 25538266 25540914 25538266 ID=Msa0354390;Name=Msa0354390
chr3_1 mRNA 25538266 25540914 25538266 ID=Msa0354390-mRNA-1;Parent=Msa0354390;Name=Msa0354390-mRNA-1;_AED=0.19;_eAED=0.19;_QI=54|1|1|1|1|1|5|147|397
chr3_1 exon 25538266 25538691 25538266 ID=Msa0354390-mRNA-1:exon:5672;Parent=Msa0354390-mRNA-1
chr3_1 exon 25538811 25539011 25538811 ID=Msa0354390-mRNA-1:exon:5671;Parent=Msa0354390-mRNA-1
chr3_1 exon 25539600 25539740 25539600 ID=Msa0354390-mRNA-1:exon:5670;Parent=Msa0354390-mRNA-1
chr3_1 exon 25539815 25540006 25539815 ID=Msa0354390-mRNA-1:exon:5669;Parent=Msa0354390-mRNA-1
chr3_1 exon 25540480 25540914 25540480 ID=Msa0354390-mRNA-1:exon:5668;Parent=Msa0354390-mRNA-1
chr3_1 five_prime_UTR 25540861 25540914 25540861 ID=Msa0354390-mRNA-1:five_prime_utr;Parent=Msa0354390-mRNA-1
chr3_1 CDS 25540480 25540860 25540480 ID=Msa0354390-mRNA-1:cds;Parent=Msa0354390-mRNA-1
chr3_1 CDS 25539815 25540006 25539815 ID=Msa0354390-mRNA-1:cds;Parent=Msa0354390-mRNA-1
chr3_1 CDS 25539600 25539740 25539600 ID=Msa0354390-mRNA-1:cds;Parent=Msa0354390-mRNA-1
chr3_1 CDS 25538811 25539011 25538811 ID=Msa0354390-mRNA-1:cds;Parent=Msa0354390-mRNA-1
chr3_1 CDS 25538413 25538691 25538413 ID=Msa0354390-mRNA-1:cds;Parent=Msa0354390-mRNA-1
chr3_1 three_prime_UTR 25538266 25538412 25538266 ID=Msa0354390-mRNA-1:three_prime_utr;Parent=Msa0354390-mRNA-1
Gene Sequence

>Msa0354390

ATGTCTCTTACATCACTTCCAACTTTTCCATCTCTAAAGACACACCATTCACTTCAACAAAATTTACCTACTATTACACCCTCAAAGGTTGGTACAAATTTGGTTTATAGTGATGCATTAGTCATTGTGGCAGCAACAGAAGCAGTTGCATTAGCCAATGATGCTGTGGATGAAGCTAGAAATGCTGGAATTGGAAAGGAGTGCATAGGAATTGATGATATGAGGAGGAAGAGAAGGAGAAAAAGAAGGAAAAATTTGGGATGTATGGTGGAAGAAGAGAATATTCAGAACAATTTCTTAAGGCAGAAAGAGGTTGTAGGGTCTGTGACATCAGGGTTTTTGAGTTCAACAGAAGAGGCTGAGCTTTGTTTATGTCTCAAGGAGGGGGCAAAGATAGAAAATGAAGGGAATTATGCTATTTCAAGGTTTACTTTGGAGAATACAAGTCTAGATAAAGTGTTGATTAATACAAGACAATCAAAAGAAAGATTAGCTCGTGATTATCGTGGTTTAGTTGCATCAATCGCAACACGATATCAAGGCAAAGGTTTAAGCATTCAAGATCTCATCCAGGAAGGAACCATTGGACTTCTTCATGGAGCAGAGAAATTTGATCCGGATAGAGGATGTAAGCTGTCTACATATGTTTACTGGTGGATTAAACAAGGCATGATTAAAGCTTTGGCGAAGAAGTCCAGATTAGTCAGATTACCGGGAGAAAAGTATGGAATGGTTGCAAAAATCGCAGAGGCTAACAATGTCTTAAGACGAAGACTGAGGCGGAAGCCGACATATAATGAAATTGCTGAGGTTCTCAATGTGAATGTTTCAACTGTGAAACTTGTTTCTGAAAGGAGCAGACAACCAATTTCATTGGACAGAGCTATAACTGATCAGAGCAACTTAATACTGAAGGAGATTATACCGGGACCAGTTGAAATGATTCCGGAGAAAATGTTTGAGAGACAGGTAATGAAGGAAGGGGTTGTGAAGCTTCTTAACACACTTAACAAGAGAGAAGAAGAGATTGTAATATTATACTTTGGACTCAATGGAGAGACCCCTTTGTCTTTTGAGGAGATAGGAAAGTTGTTGAAACTATCAAGGGAGAGAATCAGACAGATTCATGGCATTGCATTGTCAAAATTGCAACAAAACTCACTTGTAGATAGTCTAAAGTTTTATGTTGTATAG

Protein sequence

>Msa0354390

MSLTSLPTFPSLKTHHSLQQNLPTITPSKVGTNLVYSDALVIVAATEAVALANDAVDEARNAGIGKECIGIDDMRRKRRRKRRKNLGCMVEEENIQNNFLRQKEVVGSVTSGFLSSTEEAELCLCLKEGAKIENEGNYAISRFTLENTSLDKVLINTRQSKERLARDYRGLVASIATRYQGKGLSIQDLIQEGTIGLLHGAEKFDPDRGCKLSTYVYWWIKQGMIKALAKKSRLVRLPGEKYGMVAKIAEANNVLRRRLRRKPTYNEIAEVLNVNVSTVKLVSERSRQPISLDRAITDQSNLILKEIIPGPVEMIPEKMFERQVMKEGVVKLLNTLNKREEEIVILYFGLNGETPLSFEEIGKLLKLSRERIRQIHGIALSKLQQNSLVDSLKFYVV*