AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1326400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1326400 MtrunA17_Chr8g0362571 99.194 124 1 0 17 140 680 803 6.66e-85 268
Msa1326400 MtrunA17_Chr8g0362571 94.643 56 3 0 139 194 858 913 2.30e-29 114
Msa1326400 MtrunA17_Chr7g0218861 73.171 123 32 1 18 140 728 849 5.04e-61 204
Msa1326400 MtrunA17_Chr1g0157251 38.197 233 82 5 17 190 202 431 1.30e-47 160
Msa1326400 MtrunA17_Chr1g0153391 54.839 124 54 2 18 140 192 314 1.70e-40 142
Msa1326400 MtrunA17_Chr1g0153421 44.348 115 62 2 28 141 1 114 4.63e-28 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1326400 AT1G69830.1 88.000 125 15 0 16 140 655 779 1.71e-77 248
Msa1326400 AT1G69830.1 73.077 52 14 0 139 190 834 885 2.56e-19 85.5
Msa1326400 AT1G76130.2 60.000 125 49 1 17 141 183 306 3.32e-48 162
Msa1326400 AT1G76130.1 60.000 125 49 1 17 141 183 306 3.32e-48 162
Msa1326400 AT4G25000.1 37.555 229 86 5 18 190 194 421 1.09e-38 137

Find 66 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAATTACTTCAAAAGTTTA+TGG 0.108808 8_4:-40707569 None:intergenic
CCATAGGCTTATTGTATAAT+TGG 0.117740 8_4:+40707306 Msa1326400:three_prime_UTR
TTGACTTTGTCAGAGGATTT+TGG 0.181955 8_4:+40704828 Msa1326400:CDS
ACGGAAGAGACTACAATATT+TGG 0.200100 8_4:+40707197 Msa1326400:CDS
ATAAACGTCCCTTTCTGATT+TGG 0.282607 8_4:-40707083 None:intergenic
TACTCTCCCACGCAAAAGTA+TGG 0.374781 8_4:-40704887 None:intergenic
CTAAGAACTGATATACTGTT+TGG 0.387228 8_4:+40707601 Msa1326400:three_prime_UTR
AGGGAAGAAATTGGATATGA+TGG 0.388329 8_4:+40704797 Msa1326400:intron
AGTTTCAAATATTGATTTGA+AGG 0.392152 8_4:-40707449 None:intergenic
ACAGTATATCAGTTCTTAGA+TGG 0.398080 8_4:-40707597 None:intergenic
CAGTTATACATATGGTGAAA+TGG 0.406347 8_4:+40704922 Msa1326400:CDS
CACAGAGTGAAGAATTCCTT+TGG 0.406443 8_4:-40705029 None:intergenic
GGTTCATTTCAGCTTAAGTC+TGG 0.423115 8_4:+40707408 Msa1326400:three_prime_UTR
TTGGCGCTTGTCGGATCAGC+AGG 0.425045 8_4:+40705643 Msa1326400:CDS
CGGAAGAGACTACAATATTT+GGG 0.425833 8_4:+40707198 Msa1326400:CDS
GGCCACCATCCCATAACGCC+GGG 0.460663 8_4:-40705674 None:intergenic
TCCCACGCAAAAGTATGGTT+TGG 0.464670 8_4:-40704882 None:intergenic
GATTCCCTCAGTTATACATA+TGG 0.481642 8_4:+40704914 Msa1326400:CDS
AAGAAATTGGATATGATGGA+TGG 0.482079 8_4:+40704801 Msa1326400:CDS
ATGTGAGTATTGGCGCTTGT+CGG 0.492772 8_4:+40705634 Msa1326400:CDS
TAAAATTACCAAATCAGAAA+GGG 0.504939 8_4:+40707075 Msa1326400:CDS
AGACTACAATATTTGGGAGC+TGG 0.510378 8_4:+40707204 Msa1326400:CDS
ATATCTCATTGCCTTACCAT+AGG 0.516197 8_4:+40707290 Msa1326400:three_prime_UTR
GAAGCAGTTTACAAAGGGTA+GGG 0.521625 8_4:-40704031 None:intergenic
CATTGGAAAGATGTGAGTAT+TGG 0.524075 8_4:+40705624 Msa1326400:CDS
CCAATTATACAATAAGCCTA+TGG 0.524563 8_4:-40707306 None:intergenic
ATCAAGATGCACACAGGCAG+AGG 0.525851 8_4:+40704951 Msa1326400:CDS
ACAGGCAGAGGATCGTTGAC+TGG 0.534572 8_4:+40704963 Msa1326400:CDS
TTAAAATTACCAAATCAGAA+AGG 0.543716 8_4:+40707074 Msa1326400:CDS
AGTGCTGCCGGTGGTACTGC+AGG 0.548738 8_4:+40704989 Msa1326400:CDS
TTACAAAGGGTAGGGGCTTG+AGG 0.548752 8_4:-40704023 None:intergenic
AATATATGAATTGTAAACAT+AGG 0.550004 8_4:-40707488 None:intergenic
CTTATTGTATAATTGGATGA+TGG 0.551028 8_4:+40707313 Msa1326400:three_prime_UTR
TATAATTGGATGATGGTGTC+AGG 0.553125 8_4:+40707320 Msa1326400:three_prime_UTR
GCATTTGATGTTACAACCAA+AGG 0.553688 8_4:+40705013 Msa1326400:CDS
CAGAAGTATCATTATAGAGA+AGG 0.565181 8_4:+40707377 Msa1326400:three_prime_UTR
ATTGCTATGAAGATCGGTCC+TGG 0.571864 8_4:+40707127 Msa1326400:CDS
TATACAATAAGCCTATGGTA+AGG 0.575566 8_4:-40707301 None:intergenic
AAATGCACCTGCAGTACCAC+CGG 0.579580 8_4:-40704996 None:intergenic
TTCATAGAAAACCACGACAC+TGG 0.579904 8_4:+40705713 Msa1326400:CDS
TGGCCACCATCCCATAACGC+CGG 0.581678 8_4:-40705675 None:intergenic
TGGTTATGTAAAGGACTACA+TGG 0.581785 8_4:+40704853 Msa1326400:CDS
TGGAGGCTTGACTTTGTCAG+AGG 0.583959 8_4:+40704821 Msa1326400:CDS
AAGCAGTTTACAAAGGGTAG+GGG 0.584087 8_4:-40704030 None:intergenic
ATTATAGAGAAGGTTGCAGA+GGG 0.589865 8_4:+40707387 Msa1326400:three_prime_UTR
AGAACTGATATACTGTTTGG+AGG 0.591179 8_4:+40707604 Msa1326400:three_prime_UTR
CCACCATCCCATAACGCCGG+GGG 0.591813 8_4:-40705672 None:intergenic
AGAAGCAGTTTACAAAGGGT+AGG 0.592739 8_4:-40704032 None:intergenic
CTACAATATTTGGGAGCTGG+AGG 0.604343 8_4:+40707207 Msa1326400:CDS
CATTATAGAGAAGGTTGCAG+AGG 0.608423 8_4:+40707386 Msa1326400:three_prime_UTR
GTTGACTGGATTAGTGCTGC+CGG 0.609834 8_4:+40704977 Msa1326400:CDS
ATGAAAGTAACGGCACGAGA+TGG 0.610843 8_4:-40705695 None:intergenic
AAATTGGATATGATGGATGG+AGG 0.615727 8_4:+40704804 Msa1326400:CDS
CTAGGTGGTTCATAATGACC+AGG 0.616324 8_4:-40707145 None:intergenic
ATCATAATCAAGATGCACAC+AGG 0.619941 8_4:+40704945 Msa1326400:CDS
CCACGACACTGGTTCTACAC+AGG 0.621703 8_4:+40705724 Msa1326400:CDS
TTCACCATATGTATAACTGA+GGG 0.635616 8_4:-40704918 None:intergenic
AAATGGAAATCAGCTTGGGA+CGG 0.636057 8_4:+40707178 Msa1326400:CDS
GGGCTTGAGGCAATGCGTAG+AGG 0.636077 8_4:-40704010 None:intergenic
TTTCACCATATGTATAACTG+AGG 0.642730 8_4:-40704919 None:intergenic
GCCACCATCCCATAACGCCG+GGG 0.667840 8_4:-40705673 None:intergenic
CCTGTGTAGAACCAGTGTCG+TGG 0.669185 8_4:-40705724 None:intergenic
CACCATCCCATAACGCCGGG+GGG 0.673339 8_4:-40705671 None:intergenic
TTGGATGATGGTGTCAGGTG+TGG 0.674216 8_4:+40707325 Msa1326400:three_prime_UTR
GACTGGATTAGTGCTGCCGG+TGG 0.691174 8_4:+40704980 Msa1326400:CDS
TGGCGCTTGTCGGATCAGCA+GGG 0.692297 8_4:+40705644 Msa1326400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTATTATTATTAATAA+AGG - chr8_4:40705443-40705462 None:intergenic 0.0%
!! ATATTATAAATCTACAAAAA+TGG - chr8_4:40705895-40705914 None:intergenic 10.0%
!! TAATATTCATTAATGTGTAT+AGG - chr8_4:40704713-40704732 None:intergenic 15.0%
!! TGTTTATAATTACACTATAA+TGG - chr8_4:40705930-40705949 None:intergenic 15.0%
!!! TATCATAAAATTTCTTTTGA+AGG + chr8_4:40706096-40706115 Msa1326400:intron 15.0%
!!! ATCATAAAATTTCTTTTGAA+GGG + chr8_4:40706097-40706116 Msa1326400:intron 15.0%
!! TTAAAATGAATACATATTTG+AGG + chr8_4:40706703-40706722 Msa1326400:intron 15.0%
!!! AAATATTTTCACAAAGTAAA+CGG + chr8_4:40706739-40706758 Msa1326400:intron 15.0%
!! AATATATGAATTGTAAACAT+AGG - chr8_4:40707491-40707510 None:intergenic 15.0%
!! TGAAGGAAAATAAATTGAAA+GGG - chr8_4:40704535-40704554 None:intergenic 20.0%
!! ATGAAGGAAAATAAATTGAA+AGG - chr8_4:40704536-40704555 None:intergenic 20.0%
!! AACAGAAAACAGTTAAATAA+GGG - chr8_4:40704686-40704705 None:intergenic 20.0%
!! AAACAGAAAACAGTTAAATA+AGG - chr8_4:40704687-40704706 None:intergenic 20.0%
!! ATTGTAAACAAATTCCAATA+AGG - chr8_4:40705194-40705213 None:intergenic 20.0%
!!! TTACTAAGCTAATTTTGAAA+GGG - chr8_4:40705760-40705779 None:intergenic 20.0%
!!! ATTACTAAGCTAATTTTGAA+AGG - chr8_4:40705761-40705780 None:intergenic 20.0%
!! TTTATATAAGTAGTAGTGAA+AGG + chr8_4:40705969-40705988 Msa1326400:intron 20.0%
!! TTATATAAGTAGTAGTGAAA+GGG + chr8_4:40705970-40705989 Msa1326400:intron 20.0%
!!! TTTTATAGTGAGAAAAAATG+TGG - chr8_4:40706207-40706226 None:intergenic 20.0%
!! TCACTATAAAAATGAAATAG+CGG + chr8_4:40706216-40706235 Msa1326400:intron 20.0%
!! ACTGAAATTATCTAATTCAA+TGG + chr8_4:40706402-40706421 Msa1326400:intron 20.0%
!! AATTATCTAATTCAATGGTT+TGG + chr8_4:40706407-40706426 Msa1326400:intron 20.0%
!!! AATGATGAAAACAATTCTTT+TGG - chr8_4:40706615-40706634 None:intergenic 20.0%
!!! AATATTTTCACAAAGTAAAC+GGG + chr8_4:40706740-40706759 Msa1326400:intron 20.0%
!!! ATTATTTTCTCATATCAAGT+AGG - chr8_4:40706814-40706833 None:intergenic 20.0%
!!! ATTCGTAAATCTTTGAAAAT+AGG - chr8_4:40706902-40706921 None:intergenic 20.0%
!! TTAAAATTACCAAATCAGAA+AGG + chr8_4:40707074-40707093 Msa1326400:CDS 20.0%
!! TAAAATTACCAAATCAGAAA+GGG + chr8_4:40707075-40707094 Msa1326400:CDS 20.0%
!!! AGATATACAAGATTTTCTAA+AGG - chr8_4:40707276-40707295 None:intergenic 20.0%
!!! AGTTTCAAATATTGATTTGA+AGG - chr8_4:40707452-40707471 None:intergenic 20.0%
!! TCAATTACTTCAAAAGTTTA+TGG - chr8_4:40707572-40707591 None:intergenic 20.0%
!!! TAAACTTTTGAAGTAATTGA+TGG + chr8_4:40707572-40707591 Msa1326400:three_prime_UTR 20.0%
!!! AAACTTTTGAAGTAATTGAT+GGG + chr8_4:40707573-40707592 Msa1326400:three_prime_UTR 20.0%
! GCTGAAATTAAGTAAAGAAA+TGG + chr8_4:40704268-40704287 Msa1326400:intron 25.0%
! TAAAGAAATGGATCAAACAA+TGG + chr8_4:40704280-40704299 Msa1326400:intron 25.0%
! TCTTAGTAGTATAAATAGTG+AGG - chr8_4:40704437-40704456 None:intergenic 25.0%
! GAAGGAAAATAAATTGAAAG+GGG - chr8_4:40704534-40704553 None:intergenic 25.0%
! ATACAATGAAAATACTGTGT+AGG - chr8_4:40704606-40704625 None:intergenic 25.0%
! AATATTCTAGATGATACCTT+TGG + chr8_4:40704631-40704650 Msa1326400:intron 25.0%
! ATATTCTAGATGATACCTTT+GGG + chr8_4:40704632-40704651 Msa1326400:intron 25.0%
! ACAGAAAACAGTTAAATAAG+GGG - chr8_4:40704685-40704704 None:intergenic 25.0%
!! TCTAATTCTGTATCATTTTC+AGG + chr8_4:40704777-40704796 Msa1326400:intron 25.0%
!! CTAATTCTGTATCATTTTCA+GGG + chr8_4:40704778-40704797 Msa1326400:intron 25.0%
! ATTGTAACTTCACTGTTATT+GGG - chr8_4:40705269-40705288 None:intergenic 25.0%
!!! ATTTTTAAGTATCCTTAGAG+AGG - chr8_4:40705496-40705515 None:intergenic 25.0%
! TGTCTAGTAAAAAGCAAAAA+TGG - chr8_4:40705544-40705563 None:intergenic 25.0%
! GATGACATTTCATTTGAATT+TGG + chr8_4:40705589-40705608 Msa1326400:intron 25.0%
!!! TACTAAGCTAATTTTGAAAG+GGG - chr8_4:40705759-40705778 None:intergenic 25.0%
! CGCATCAAAACAATATTTAA+TGG - chr8_4:40706071-40706090 None:intergenic 25.0%
! GATAAAACACGAAAAACATA+AGG + chr8_4:40706456-40706475 Msa1326400:intron 25.0%
!!! TTCACACAAATTTTAGGAAA+AGG - chr8_4:40706515-40706534 None:intergenic 25.0%
!! GTAAAGTTCACACAAATTTT+AGG - chr8_4:40706521-40706540 None:intergenic 25.0%
!! ATATTTTCACAAAGTAAACG+GGG + chr8_4:40706741-40706760 Msa1326400:intron 25.0%
! TAACACCAAGGAAAAAATTT+AGG - chr8_4:40706767-40706786 None:intergenic 25.0%
!!! AAATTTTTTCCTTGGTGTTA+TGG + chr8_4:40706767-40706786 Msa1326400:intron 25.0%
! GAAAAAATTGCTATGAAGAT+CGG + chr8_4:40707121-40707140 Msa1326400:CDS 25.0%
! CTTATTGTATAATTGGATGA+TGG + chr8_4:40707313-40707332 Msa1326400:three_prime_UTR 25.0%
!! CAAAAAGTGTATTGAACAAT+TGG + chr8_4:40707529-40707548 Msa1326400:three_prime_UTR 25.0%
CATGATCTGGAAATAGTAAA+AGG - chr8_4:40704066-40704085 None:intergenic 30.0%
AATTTCAGCTTCTGAATTCA+GGG - chr8_4:40704257-40704276 None:intergenic 30.0%
TAATTTCAGCTTCTGAATTC+AGG - chr8_4:40704258-40704277 None:intergenic 30.0%
GATATATAAAGAGTGAGGTA+GGG - chr8_4:40704485-40704504 None:intergenic 30.0%
GTAAGGATATATAAAGAGTG+AGG - chr8_4:40704490-40704509 None:intergenic 30.0%
TTGTAATAAAGAGAGTGGTA+AGG - chr8_4:40704507-40704526 None:intergenic 30.0%
GCTACAATTACATGAAATGA+AGG - chr8_4:40704552-40704571 None:intergenic 30.0%
TATTCTAGATGATACCTTTG+GGG + chr8_4:40704633-40704652 Msa1326400:intron 30.0%
AGAAAACAGTTAAATAAGGG+GGG - chr8_4:40704683-40704702 None:intergenic 30.0%
CAGAAAACAGTTAAATAAGG+GGG - chr8_4:40704684-40704703 None:intergenic 30.0%
!! ATCATTTTCAGGGAAGAAAT+TGG + chr8_4:40704788-40704807 Msa1326400:intron 30.0%
! AAGAAATTGGATATGATGGA+TGG + chr8_4:40704801-40704820 Msa1326400:CDS 30.0%
TTCACCATATGTATAACTGA+GGG - chr8_4:40704921-40704940 None:intergenic 30.0%
TTTCACCATATGTATAACTG+AGG - chr8_4:40704922-40704941 None:intergenic 30.0%
CAGTTATACATATGGTGAAA+TGG + chr8_4:40704922-40704941 Msa1326400:CDS 30.0%
GTAAACAAATTCCAATAAGG+TGG - chr8_4:40705191-40705210 None:intergenic 30.0%
TTGTAACTTCACTGTTATTG+GGG - chr8_4:40705268-40705287 None:intergenic 30.0%
CATTGTAACTTCACTGTTAT+TGG - chr8_4:40705270-40705289 None:intergenic 30.0%
AATGCTTCTAGTGAAAGAAT+TGG + chr8_4:40705292-40705311 Msa1326400:intron 30.0%
TCATGAGTTCAAATCCTAAA+CGG + chr8_4:40705388-40705407 Msa1326400:intron 30.0%
CAAATGAAATGTCATCTAGT+CGG - chr8_4:40705585-40705604 None:intergenic 30.0%
! GTGGTTTTCTATGAAAGTAA+CGG - chr8_4:40705708-40705727 None:intergenic 30.0%
! GTGGCATTGTTTAAAACAAA+AGG - chr8_4:40705823-40705842 None:intergenic 30.0%
TAAAACTCGAGATTCTGATT+TGG + chr8_4:40705846-40705865 Msa1326400:intron 30.0%
!! AATTTCTTTTGAAGGGTCAT+TGG + chr8_4:40706104-40706123 Msa1326400:intron 30.0%
! CGTTTATGTGGATATTTTCT+GGG + chr8_4:40706325-40706344 Msa1326400:intron 30.0%
! TGTTTTGCACAAAGTAAATG+AGG - chr8_4:40706482-40706501 None:intergenic 30.0%
!! TTCTCGTTTTCACTATTTCT+TGG + chr8_4:40706942-40706961 Msa1326400:intron 30.0%
AGATGGTCAATTATTTGCAT+TGG + chr8_4:40707016-40707035 Msa1326400:intron 30.0%
CCTTGAACATGAAAATAGAA+AGG - chr8_4:40707054-40707073 None:intergenic 30.0%
! CCTTTCTATTTTCATGTTCA+AGG + chr8_4:40707051-40707070 Msa1326400:intron 30.0%
TATACAATAAGCCTATGGTA+AGG - chr8_4:40707304-40707323 None:intergenic 30.0%
CCAATTATACAATAAGCCTA+TGG - chr8_4:40707309-40707328 None:intergenic 30.0%
CCATAGGCTTATTGTATAAT+TGG + chr8_4:40707306-40707325 Msa1326400:three_prime_UTR 30.0%
!! CAGAAGTATCATTATAGAGA+AGG + chr8_4:40707377-40707396 Msa1326400:three_prime_UTR 30.0%
ACAGTATATCAGTTCTTAGA+TGG - chr8_4:40707600-40707619 None:intergenic 30.0%
TCGTAGAAGCAGTTTACAAA+GGG - chr8_4:40704039-40704058 None:intergenic 35.0%
CTATTTCCAGATCATGTAAC+CGG + chr8_4:40704070-40704089 Msa1326400:intron 35.0%
CATATGTGCATAAGAATGGA+TGG - chr8_4:40704114-40704133 None:intergenic 35.0%
CATCCATTCTTATGCACATA+TGG + chr8_4:40704112-40704131 Msa1326400:intron 35.0%
TGGCTCATATTAATTTCACG+TGG + chr8_4:40704132-40704151 Msa1326400:intron 35.0%
TCTTTGTCTTAGAAACGTTC+TGG + chr8_4:40704196-40704215 Msa1326400:intron 35.0%
AATCCTAGATGCTATCTGAT+GGG + chr8_4:40704229-40704248 Msa1326400:intron 35.0%
ATTATGATTAAGCAGAGAGG+GGG - chr8_4:40704372-40704391 None:intergenic 35.0%
CATTATGATTAAGCAGAGAG+GGG - chr8_4:40704373-40704392 None:intergenic 35.0%
CCATTATGATTAAGCAGAGA+GGG - chr8_4:40704374-40704393 None:intergenic 35.0%
ACCATTATGATTAAGCAGAG+AGG - chr8_4:40704375-40704394 None:intergenic 35.0%
! TGATGGATATGCAAGAATAC+TGG - chr8_4:40704403-40704422 None:intergenic 35.0%
GGATATATAAAGAGTGAGGT+AGG - chr8_4:40704486-40704505 None:intergenic 35.0%
GTGTGTTGTAATAAAGAGAG+TGG - chr8_4:40704512-40704531 None:intergenic 35.0%
! GTAGCATAAGCTTTATGTTG+AGG + chr8_4:40704567-40704586 Msa1326400:intron 35.0%
TAATACGATAACTACCCCAA+AGG - chr8_4:40704650-40704669 None:intergenic 35.0%
AGGGAAGAAATTGGATATGA+TGG + chr8_4:40704797-40704816 Msa1326400:intron 35.0%
!! AAATTGGATATGATGGATGG+AGG + chr8_4:40704804-40704823 Msa1326400:CDS 35.0%
! TTGACTTTGTCAGAGGATTT+TGG + chr8_4:40704828-40704847 Msa1326400:CDS 35.0%
! TGACTTTGTCAGAGGATTTT+GGG + chr8_4:40704829-40704848 Msa1326400:CDS 35.0%
!!! ATTTTGGGGTGGTTATGTAA+AGG + chr8_4:40704844-40704863 Msa1326400:CDS 35.0%
TGGTTATGTAAAGGACTACA+TGG + chr8_4:40704853-40704872 Msa1326400:CDS 35.0%
GATTCCCTCAGTTATACATA+TGG + chr8_4:40704914-40704933 Msa1326400:CDS 35.0%
ATCATAATCAAGATGCACAC+AGG + chr8_4:40704945-40704964 Msa1326400:CDS 35.0%
GCATTTGATGTTACAACCAA+AGG + chr8_4:40705013-40705032 Msa1326400:CDS 35.0%
AAACTTACTCTTCAATCCTG+TGG + chr8_4:40705087-40705106 Msa1326400:intron 35.0%
AACTTACTCTTCAATCCTGT+GGG + chr8_4:40705088-40705107 Msa1326400:intron 35.0%
! TACTAGTTTCACCACCTTAT+TGG + chr8_4:40705177-40705196 Msa1326400:intron 35.0%
CATGAGTTCAAATCCTAAAC+GGG + chr8_4:40705389-40705408 Msa1326400:intron 35.0%
ATGAGTTCAAATCCTAAACG+GGG + chr8_4:40705390-40705409 Msa1326400:intron 35.0%
! TTTTTACAACTACCCCGTTT+AGG - chr8_4:40705405-40705424 None:intergenic 35.0%
! TTTGAATTTGGCTCCTTTGT+AGG + chr8_4:40705601-40705620 Msa1326400:intron 35.0%
CATTGGAAAGATGTGAGTAT+TGG + chr8_4:40705624-40705643 Msa1326400:CDS 35.0%
! AGAATCTCGAGTTTTACTTG+TGG - chr8_4:40705842-40705861 None:intergenic 35.0%
TCACTCGTATAAGTGTTCAT+TGG + chr8_4:40706006-40706025 Msa1326400:intron 35.0%
! GCGTTTATGTGGATATTTTC+TGG + chr8_4:40706324-40706343 Msa1326400:intron 35.0%
! TTATGTGGATATTTTCTGGG+TGG + chr8_4:40706328-40706347 Msa1326400:intron 35.0%
! GTGAACTTTACTTGCTAACA+AGG + chr8_4:40706530-40706549 Msa1326400:intron 35.0%
GAAACGAATTGCTAGTTGTA+GGG - chr8_4:40706654-40706673 None:intergenic 35.0%
TGAAACGAATTGCTAGTTGT+AGG - chr8_4:40706655-40706674 None:intergenic 35.0%
ATATGGTTTCCATAACACCA+AGG - chr8_4:40706779-40706798 None:intergenic 35.0%
TGGAAACCATATGCATGTTT+AGG + chr8_4:40706787-40706806 Msa1326400:intron 35.0%
GGAAACCATATGCATGTTTA+GGG + chr8_4:40706788-40706807 Msa1326400:intron 35.0%
!!! ACGAGAAAATGTTGTTTTCG+CGG - chr8_4:40706929-40706948 None:intergenic 35.0%
! CTCTGAAAATGTGCTTTAGA+TGG + chr8_4:40706999-40707018 Msa1326400:intron 35.0%
ATAAACGTCCCTTTCTGATT+TGG - chr8_4:40707086-40707105 None:intergenic 35.0%
!! TTCCATTTTTGGGAATCACT+AGG - chr8_4:40707166-40707185 None:intergenic 35.0%
!! CCAAGCTGATTTCCATTTTT+GGG - chr8_4:40707176-40707195 None:intergenic 35.0%
CCAAAAATGGAAATCAGCTT+GGG + chr8_4:40707174-40707193 Msa1326400:CDS 35.0%
ACGGAAGAGACTACAATATT+TGG + chr8_4:40707197-40707216 Msa1326400:CDS 35.0%
CGGAAGAGACTACAATATTT+GGG + chr8_4:40707198-40707217 Msa1326400:CDS 35.0%
ATATCTCATTGCCTTACCAT+AGG + chr8_4:40707290-40707309 Msa1326400:three_prime_UTR 35.0%
! TATAATTGGATGATGGTGTC+AGG + chr8_4:40707320-40707339 Msa1326400:three_prime_UTR 35.0%
ATTATAGAGAAGGTTGCAGA+GGG + chr8_4:40707387-40707406 Msa1326400:three_prime_UTR 35.0%
AAGCAGTTTACAAAGGGTAG+GGG - chr8_4:40704033-40704052 None:intergenic 40.0%
GAAGCAGTTTACAAAGGGTA+GGG - chr8_4:40704034-40704053 None:intergenic 40.0%
AGAAGCAGTTTACAAAGGGT+AGG - chr8_4:40704035-40704054 None:intergenic 40.0%
GTCGTAGAAGCAGTTTACAA+AGG - chr8_4:40704040-40704059 None:intergenic 40.0%
TGTGCATAAGAATGGATGGT+TGG - chr8_4:40704110-40704129 None:intergenic 40.0%
GAGCCATATGTGCATAAGAA+TGG - chr8_4:40704118-40704137 None:intergenic 40.0%
! CATCAGATAGCATCTAGGAT+TGG - chr8_4:40704230-40704249 None:intergenic 40.0%
CAATCCTAGATGCTATCTGA+TGG + chr8_4:40704228-40704247 Msa1326400:intron 40.0%
TTCTCTGAGTGGAGTAGATT+GGG - chr8_4:40704333-40704352 None:intergenic 40.0%
TTTCTCTGAGTGGAGTAGAT+TGG - chr8_4:40704334-40704353 None:intergenic 40.0%
CCCTCTCTGCTTAATCATAA+TGG + chr8_4:40704371-40704390 Msa1326400:intron 40.0%
! AGTGAGGTAGGGTATTTAGT+TGG - chr8_4:40704474-40704493 None:intergenic 40.0%
GGGGTAGTTATCGTATTACA+TGG + chr8_4:40704652-40704671 Msa1326400:intron 40.0%
! GACTTTGTCAGAGGATTTTG+GGG + chr8_4:40704830-40704849 Msa1326400:CDS 40.0%
! AACCAAACCATACTTTTGCG+TGG + chr8_4:40704880-40704899 Msa1326400:CDS 40.0%
! ACCAAACCATACTTTTGCGT+GGG + chr8_4:40704881-40704900 Msa1326400:CDS 40.0%
CACAGAGTGAAGAATTCCTT+TGG - chr8_4:40705032-40705051 None:intergenic 40.0%
TCTGTGAGTACTCAACTTGA+CGG + chr8_4:40705046-40705065 Msa1326400:intron 40.0%
TAAGTATCCTTAGAGAGGTG+CGG - chr8_4:40705491-40705510 None:intergenic 40.0%
CATCTTTCCAATGCCTACAA+AGG - chr8_4:40705617-40705636 None:intergenic 40.0%
TTCATAGAAAACCACGACAC+TGG + chr8_4:40705713-40705732 Msa1326400:CDS 40.0%
! TCCTTGCATTTCTTTTCCGT+GGG - chr8_4:40706137-40706156 None:intergenic 40.0%
! ATCCTTGCATTTCTTTTCCG+TGG - chr8_4:40706138-40706157 None:intergenic 40.0%
ATGTGGTCAAAGAACACTGA+CGG - chr8_4:40706190-40706209 None:intergenic 40.0%
CACTTCTCTCTATTCGGAAA+CGG + chr8_4:40706239-40706258 Msa1326400:intron 40.0%
ACCACTTAGTAGCGTTTATG+TGG + chr8_4:40706313-40706332 Msa1326400:intron 40.0%
TCCACATAAACGCTACTAAG+TGG - chr8_4:40706317-40706336 None:intergenic 40.0%
! TTTGGCTGCAGCTATGTTTT+TGG + chr8_4:40706425-40706444 Msa1326400:intron 40.0%
!! CATTTTTGGGAATCACTAGG+TGG - chr8_4:40707163-40707182 None:intergenic 40.0%
CACCTAGTGATTCCCAAAAA+TGG + chr8_4:40707161-40707180 Msa1326400:CDS 40.0%
CCCAAAAATGGAAATCAGCT+TGG + chr8_4:40707173-40707192 Msa1326400:CDS 40.0%
!! CCCAAGCTGATTTCCATTTT+TGG - chr8_4:40707177-40707196 None:intergenic 40.0%
AAATGGAAATCAGCTTGGGA+CGG + chr8_4:40707178-40707197 Msa1326400:CDS 40.0%
AGACTACAATATTTGGGAGC+TGG + chr8_4:40707204-40707223 Msa1326400:CDS 40.0%
CATTATAGAGAAGGTTGCAG+AGG + chr8_4:40707386-40707405 Msa1326400:three_prime_UTR 40.0%
GGTTCATTTCAGCTTAAGTC+TGG + chr8_4:40707408-40707427 Msa1326400:three_prime_UTR 40.0%
TGGATGGTTGGACAGATTCT+GGG - chr8_4:40704098-40704117 None:intergenic 45.0%
ATGGATGGTTGGACAGATTC+TGG - chr8_4:40704099-40704118 None:intergenic 45.0%
!! TTCTAAGACAAAGACCGTGC+TGG - chr8_4:40704190-40704209 None:intergenic 45.0%
! AGCATCTAGGATTGGAGACA+CGG - chr8_4:40704222-40704241 None:intergenic 45.0%
GTTCCCATCAGATAGCATCT+AGG - chr8_4:40704235-40704254 None:intergenic 45.0%
! GGTAGGGTATTTAGTTGGCA+AGG - chr8_4:40704469-40704488 None:intergenic 45.0%
!! TTTGTCAGAGGATTTTGGGG+TGG + chr8_4:40704833-40704852 Msa1326400:CDS 45.0%
! TCCCACGCAAAAGTATGGTT+TGG - chr8_4:40704885-40704904 None:intergenic 45.0%
TACTCTCCCACGCAAAAGTA+TGG - chr8_4:40704890-40704909 None:intergenic 45.0%
TCAGCACATCAGTGGTAGTT+GGG + chr8_4:40705351-40705370 Msa1326400:intron 45.0%
! TTTGGCTCCTTTGTAGGCAT+TGG + chr8_4:40705607-40705626 Msa1326400:intron 45.0%
!! ATGTGAGTATTGGCGCTTGT+CGG + chr8_4:40705634-40705653 Msa1326400:CDS 45.0%
ATGAAAGTAACGGCACGAGA+TGG - chr8_4:40705698-40705717 None:intergenic 45.0%
!! ACACTGGTTCTACACAGGTT+TGG + chr8_4:40705729-40705748 Msa1326400:intron 45.0%
!! ACTCGAGATTCTGATTTGGC+AGG + chr8_4:40705850-40705869 Msa1326400:intron 45.0%
! CCTTGCATTTCTTTTCCGTG+GGG - chr8_4:40706136-40706155 None:intergenic 45.0%
GCTTATACTCTTACTCACCC+AGG + chr8_4:40706160-40706179 Msa1326400:intron 45.0%
TAGCGGCACTTCTCTCTATT+CGG + chr8_4:40706233-40706252 Msa1326400:intron 45.0%
CTCTCTATTCGGAAACGGAA+CGG + chr8_4:40706244-40706263 Msa1326400:intron 45.0%
TCTCTATTCGGAAACGGAAC+GGG + chr8_4:40706245-40706264 Msa1326400:intron 45.0%
!!! TGCAGCTATGTTTTTGGTGC+TGG + chr8_4:40706431-40706450 Msa1326400:intron 45.0%
!!! CGGGGCCTAAATTTTTTCCT+TGG + chr8_4:40706759-40706778 Msa1326400:intron 45.0%
GTAGGCCCTAAACATGCATA+TGG - chr8_4:40706796-40706815 None:intergenic 45.0%
ATTGCTATGAAGATCGGTCC+TGG + chr8_4:40707127-40707146 Msa1326400:CDS 45.0%
CTAGGTGGTTCATAATGACC+AGG - chr8_4:40707148-40707167 None:intergenic 45.0%
CTACAATATTTGGGAGCTGG+AGG + chr8_4:40707207-40707226 Msa1326400:CDS 45.0%
TTACAAAGGGTAGGGGCTTG+AGG - chr8_4:40704026-40704045 None:intergenic 50.0%
GGATGGTTGGACAGATTCTG+GGG - chr8_4:40704097-40704116 None:intergenic 50.0%
TGATTAAGCAGAGAGGGGGA+GGG - chr8_4:40704368-40704387 None:intergenic 50.0%
ATGATTAAGCAGAGAGGGGG+AGG - chr8_4:40704369-40704388 None:intergenic 50.0%
TGGAGGCTTGACTTTGTCAG+AGG + chr8_4:40704821-40704840 Msa1326400:CDS 50.0%
!! ACTTTTGCGTGGGAGAGTAC+TGG + chr8_4:40704891-40704910 Msa1326400:CDS 50.0%
!!! CTTTTGCGTGGGAGAGTACT+GGG + chr8_4:40704892-40704911 Msa1326400:CDS 50.0%
ATCAAGATGCACACAGGCAG+AGG + chr8_4:40704951-40704970 Msa1326400:CDS 50.0%
!! GTTGACTGGATTAGTGCTGC+CGG + chr8_4:40704977-40704996 Msa1326400:CDS 50.0%
AAATGCACCTGCAGTACCAC+CGG - chr8_4:40704999-40705018 None:intergenic 50.0%
CGCTATTCGAAGAATCCCAC+AGG - chr8_4:40705106-40705125 None:intergenic 50.0%
TCACACAGTCAGCACATCAG+TGG + chr8_4:40705343-40705362 Msa1326400:intron 50.0%
GTCAGCACATCAGTGGTAGT+TGG + chr8_4:40705350-40705369 Msa1326400:intron 50.0%
AAACTCACCGCACCTCTCTA+AGG + chr8_4:40705481-40705500 Msa1326400:intron 50.0%
GGTCATTGGAGATTTCCCCA+CGG + chr8_4:40706118-40706137 Msa1326400:intron 50.0%
CCCCACGGAAAAGAAATGCA+AGG + chr8_4:40706133-40706152 Msa1326400:intron 50.0%
AGAACACTGACGGAGTTCCT+GGG - chr8_4:40706180-40706199 None:intergenic 50.0%
AAGAACACTGACGGAGTTCC+TGG - chr8_4:40706181-40706200 None:intergenic 50.0%
! GCAGAAGCACAGTGAGTATC+AGG + chr8_4:40706275-40706294 Msa1326400:intron 50.0%
! TTGGATGATGGTGTCAGGTG+TGG + chr8_4:40707325-40707344 Msa1326400:three_prime_UTR 50.0%
TGGGGACCGGTTACATGATC+TGG - chr8_4:40704079-40704098 None:intergenic 55.0%
! GTTGGACAGATTCTGGGGAC+CGG - chr8_4:40704092-40704111 None:intergenic 55.0%
GTCCATGACTCTCACCAGCA+CGG + chr8_4:40704173-40704192 Msa1326400:intron 55.0%
GGGGGTTCTCTTTCTCTGAG+TGG - chr8_4:40704344-40704363 None:intergenic 55.0%
ATTAAGCAGAGAGGGGGAGG+GGG - chr8_4:40704366-40704385 None:intergenic 55.0%
GATTAAGCAGAGAGGGGGAG+GGG - chr8_4:40704367-40704386 None:intergenic 55.0%
GTGAGGCGAGTGAGTTGTGA+TGG - chr8_4:40704420-40704439 None:intergenic 55.0%
ACAGGCAGAGGATCGTTGAC+TGG + chr8_4:40704963-40704982 Msa1326400:CDS 55.0%
CCTGTGTAGAACCAGTGTCG+TGG - chr8_4:40705727-40705746 None:intergenic 55.0%
!! CCACGACACTGGTTCTACAC+AGG + chr8_4:40705724-40705743 Msa1326400:CDS 55.0%
GGGCTTGAGGCAATGCGTAG+AGG - chr8_4:40704013-40704032 None:intergenic 60.0%
! GACCGTGCTGGTGAGAGTCA+TGG - chr8_4:40704178-40704197 None:intergenic 60.0%
TTAAGCAGAGAGGGGGAGGG+GGG - chr8_4:40704365-40704384 None:intergenic 60.0%
!! GACTGGATTAGTGCTGCCGG+TGG + chr8_4:40704980-40704999 Msa1326400:CDS 60.0%
TTGGCGCTTGTCGGATCAGC+AGG + chr8_4:40705643-40705662 Msa1326400:CDS 60.0%
TGGCGCTTGTCGGATCAGCA+GGG + chr8_4:40705644-40705663 Msa1326400:CDS 60.0%
GATCAGCAGGGAAAACCCCC+CGG + chr8_4:40705656-40705675 Msa1326400:CDS 60.0%
GGAAAACCCCCCGGCGTTAT+GGG + chr8_4:40705665-40705684 Msa1326400:CDS 60.0%
TGGCCACCATCCCATAACGC+CGG - chr8_4:40705678-40705697 None:intergenic 60.0%
TAAGCAGAGAGGGGGAGGGG+GGG - chr8_4:40704364-40704383 None:intergenic 65.0%
AGTGCTGCCGGTGGTACTGC+AGG + chr8_4:40704989-40705008 Msa1326400:CDS 65.0%
GGGAAAACCCCCCGGCGTTA+TGG + chr8_4:40705664-40705683 Msa1326400:CDS 65.0%
AACCCCCCGGCGTTATGGGA+TGG + chr8_4:40705669-40705688 Msa1326400:CDS 65.0%
CACCATCCCATAACGCCGGG+GGG - chr8_4:40705674-40705693 None:intergenic 65.0%
CCACCATCCCATAACGCCGG+GGG - chr8_4:40705675-40705694 None:intergenic 65.0%
GCCACCATCCCATAACGCCG+GGG - chr8_4:40705676-40705695 None:intergenic 65.0%
GGCCACCATCCCATAACGCC+GGG - chr8_4:40705677-40705696 None:intergenic 65.0%
AAGCAGAGAGGGGGAGGGGG+GGG - chr8_4:40704363-40704382 None:intergenic 70.0%
CCCCCGGCGTTATGGGATGG+TGG + chr8_4:40705672-40705691 Msa1326400:CDS 70.0%
AGCAGAGAGGGGGAGGGGGG+GGG - chr8_4:40704362-40704381 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 40703995 40707623 40703995 ID=Msa1326400;Name=Msa1326400
chr8_4 mRNA 40703995 40707623 40703995 ID=Msa1326400-mRNA-1;Parent=Msa1326400;Name=Msa1326400-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.33|0.5|0.75|1|1|4|386|194
chr8_4 exon 40703995 40704041 40703995 ID=Msa1326400-mRNA-1:exon:12043;Parent=Msa1326400-mRNA-1
chr8_4 exon 40704799 40705048 40704799 ID=Msa1326400-mRNA-1:exon:12044;Parent=Msa1326400-mRNA-1
chr8_4 exon 40705623 40705745 40705623 ID=Msa1326400-mRNA-1:exon:12045;Parent=Msa1326400-mRNA-1
chr8_4 exon 40707073 40707623 40707073 ID=Msa1326400-mRNA-1:exon:12046;Parent=Msa1326400-mRNA-1
chr8_4 CDS 40703995 40704041 40703995 ID=Msa1326400-mRNA-1:cds;Parent=Msa1326400-mRNA-1
chr8_4 CDS 40704799 40705048 40704799 ID=Msa1326400-mRNA-1:cds;Parent=Msa1326400-mRNA-1
chr8_4 CDS 40705623 40705745 40705623 ID=Msa1326400-mRNA-1:cds;Parent=Msa1326400-mRNA-1
chr8_4 CDS 40707073 40707237 40707073 ID=Msa1326400-mRNA-1:cds;Parent=Msa1326400-mRNA-1
chr8_4 three_prime_UTR 40707238 40707623 40707238 ID=Msa1326400-mRNA-1:three_prime_utr;Parent=Msa1326400-mRNA-1
Gene Sequence

>Msa1326400

ATGCGTTCATCAGAGCCTCTACGCATTGCCTCAAGCCCCTACCCTTTGGAAGAAATTGGATATGATGGATGGAGGCTTGACTTTGTCAGAGGATTTTGGGGTGGTTATGTAAAGGACTACATGGATGCAACCAAACCATACTTTTGCGTGGGAGAGTACTGGGATTCCCTCAGTTATACATATGGTGAAATGGATCATAATCAAGATGCACACAGGCAGAGGATCGTTGACTGGATTAGTGCTGCCGGTGGTACTGCAGGTGCATTTGATGTTACAACCAAAGGAATTCTTCACTCTGCATTGGAAAGATGTGAGTATTGGCGCTTGTCGGATCAGCAGGGAAAACCCCCCGGCGTTATGGGATGGTGGCCATCTCGTGCCGTTACTTTCATAGAAAACCACGACACTGGTTCTACACAGGTTAAAATTACCAAATCAGAAAGGGACGTTTATGCTGCTATCATAGACGAAAAAATTGCTATGAAGATCGGTCCTGGTCATTATGAACCACCTAGTGATTCCCAAAAATGGAAATCAGCTTGGGACGGAAGAGACTACAATATTTGGGAGCTGGAGGAATCATAA

Protein sequence

>Msa1326400

MRSSEPLRIASSPYPLEEIGYDGWRLDFVRGFWGGYVKDYMDATKPYFCVGEYWDSLSYTYGEMDHNQDAHRQRIVDWISAAGGTAGAFDVTTKGILHSALERCEYWRLSDQQGKPPGVMGWWPSRAVTFIENHDTGSTQVKITKSERDVYAAIIDEKIAMKIGPGHYEPPSDSQKWKSAWDGRDYNIWELEES*