Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0333980 | XP_003596481.1 | 98.859 | 526 | 6 | 0 | 1 | 526 | 1 | 526 | 0.0 | 1061 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0333980 | sp|Q8RWG3|RER6_ARATH | 26.168 | 321 | 207 | 9 | 173 | 474 | 418 | 727 | 1.31e-17 | 89.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0069230 | Msa0333980 | 0.813047 | 3.118229e-51 | -8.615850e-47 |
| Msa0075830 | Msa0333980 | 0.803707 | 3.065238e-49 | -8.615850e-47 |
| Msa0089510 | Msa0333980 | 0.825809 | 3.829144e-54 | -8.615850e-47 |
| Msa0089520 | Msa0333980 | 0.827401 | 1.596484e-54 | -8.615850e-47 |
| Msa0122170 | Msa0333980 | 0.801129 | 1.041447e-48 | -8.615850e-47 |
| Msa0182610 | Msa0333980 | 0.806719 | 7.176930e-50 | -8.615850e-47 |
| Msa0253320 | Msa0333980 | 0.810767 | 9.787811e-51 | -8.615850e-47 |
| Msa0280120 | Msa0333980 | 0.818895 | 1.543663e-52 | -8.615850e-47 |
| Msa0322480 | Msa0333980 | 0.800913 | 1.153017e-48 | -8.615850e-47 |
| Msa0333980 | Msa0425810 | 0.840097 | 1.067576e-57 | -8.615850e-47 |
| Msa0333980 | Msa0444340 | 0.809284 | 2.042132e-50 | -8.615850e-47 |
| Msa0333980 | Msa0472270 | 0.822655 | 2.109468e-53 | -8.615850e-47 |
| Msa0333980 | Msa0472570 | 0.850772 | 1.367938e-60 | -8.615850e-47 |
| Msa0333980 | Msa0514630 | 0.823694 | 1.206877e-53 | -8.615850e-47 |
| Msa0333980 | Msa0575670 | 0.824050 | 9.958409e-54 | -8.615850e-47 |
| Msa0333980 | Msa0580360 | 0.808292 | 3.327664e-50 | -8.615850e-47 |
| Msa0333980 | Msa0603180 | 0.800173 | 1.631579e-48 | -8.615850e-47 |
| Msa0333980 | Msa0644220 | 0.833269 | 5.875180e-56 | -8.615850e-47 |
| Msa0333980 | Msa0684030 | 0.808401 | 3.153359e-50 | -8.615850e-47 |
| Msa0333980 | Msa0705250 | 0.801783 | 7.649728e-49 | -8.615850e-47 |
| Msa0333980 | Msa1072000 | 0.844538 | 7.107349e-59 | -8.615850e-47 |
| Msa0333980 | Msa1118460 | 0.856817 | 2.488481e-62 | -8.615850e-47 |
| Msa0333980 | Msa1127900 | 0.821326 | 4.285412e-53 | -8.615850e-47 |
| Msa0333980 | Msa1165810 | 0.805481 | 1.307672e-49 | -8.615850e-47 |
| Msa0333980 | Msa1340540 | 0.858043 | 1.080051e-62 | -8.615850e-47 |
| Msa0333980 | Msa1409530 | 0.804018 | 2.641415e-49 | -8.615850e-47 |
| Msa0333980 | Msa1411830 | 0.807387 | 5.180877e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0333980 | MtrunA17_Chr2g0318431 | 98.859 | 526 | 6 | 0 | 1 | 526 | 1 | 526 | 0.0 | 1061 |
| Msa0333980 | MtrunA17_Chr7g0240091 | 29.680 | 219 | 138 | 5 | 241 | 445 | 225 | 441 | 2.89e-18 | 87.4 |
| Msa0333980 | MtrunA17_Chr3g0114241 | 28.287 | 251 | 159 | 6 | 173 | 408 | 426 | 670 | 5.98e-17 | 84.3 |
| Msa0333980 | MtrunA17_Chr2g0320711 | 22.407 | 241 | 173 | 4 | 179 | 410 | 155 | 390 | 4.07e-13 | 71.2 |
| Msa0333980 | MtrunA17_Chr3g0090071 | 26.554 | 177 | 124 | 2 | 238 | 408 | 164 | 340 | 4.09e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0333980 | AT5G24690.1 | 67.407 | 540 | 140 | 11 | 3 | 526 | 2 | 521 | 0.0 | 613 |
| Msa0333980 | AT3G56140.2 | 25.392 | 319 | 212 | 7 | 173 | 474 | 199 | 508 | 6.75e-19 | 90.1 |
| Msa0333980 | AT3G56140.1 | 26.168 | 321 | 207 | 9 | 173 | 474 | 418 | 727 | 1.33e-18 | 89.7 |
| Msa0333980 | AT3G56140.3 | 26.168 | 321 | 207 | 9 | 173 | 474 | 418 | 727 | 1.33e-18 | 89.7 |
| Msa0333980 | AT2G40400.2 | 25.692 | 253 | 165 | 4 | 173 | 409 | 409 | 654 | 2.61e-17 | 85.9 |
| Msa0333980 | AT2G40400.1 | 25.692 | 253 | 165 | 4 | 173 | 409 | 409 | 654 | 2.61e-17 | 85.9 |
| Msa0333980 | AT2G40400.3 | 25.703 | 249 | 162 | 4 | 173 | 405 | 409 | 650 | 3.47e-16 | 82.0 |
| Msa0333980 | AT5G22790.1 | 28.019 | 207 | 136 | 5 | 241 | 434 | 209 | 415 | 9.23e-16 | 80.1 |
| Msa0333980 | AT2G37860.3 | 27.222 | 180 | 122 | 2 | 241 | 411 | 209 | 388 | 6.03e-15 | 77.4 |
| Msa0333980 | AT2G37860.4 | 27.222 | 180 | 122 | 2 | 241 | 411 | 209 | 388 | 6.03e-15 | 77.4 |
Find 165 sgRNAs with CRISPR-Local
Find 437 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATTGTCCTTGGTGGTTTC+TGG | 0.099632 | 2_4:+52063864 | Msa0333980:three_prime_UTR |
| TCAAAGAATGCAGTTGTTTC+TGG | 0.145362 | 2_4:+52063657 | Msa0333980:CDS |
| TTGAAATGAGCTATCCTCTT+AGG | 0.209103 | 2_4:+52062706 | Msa0333980:CDS |
| GTTCGTCAGTTTGATGTTAT+TGG | 0.210309 | 2_4:+52063113 | Msa0333980:CDS |
| TGTTTCTGGGCTTGGTCTCT+TGG | 0.267949 | 2_4:+52063671 | Msa0333980:CDS |
| TGGGTTGGTTGATCCCTCTA+TGG | 0.281280 | 2_4:+52058410 | Msa0333980:five_prime_UTR |
| CTCCCAAAGCTCGTCGAAAA+AGG | 0.281953 | 2_4:+52063739 | Msa0333980:CDS |
| TTGCTAAGAATTTCACCATT+TGG | 0.287583 | 2_4:-52061815 | None:intergenic |
| AAACACTTTGGCTAAGAAAA+AGG | 0.291899 | 2_4:+52062827 | Msa0333980:CDS |
| GCCGCGCCTCCTTCCGCTTC+CGG | 0.298518 | 2_4:+52058758 | Msa0333980:CDS |
| TACGGAGGAGAGGGAGTTTA+GGG | 0.300913 | 2_4:-52058628 | None:intergenic |
| TGCTAAGAATTTCACCATTT+GGG | 0.301877 | 2_4:-52061814 | None:intergenic |
| CAGATCCTGCTTTCATGTAT+AGG | 0.308136 | 2_4:+52062372 | Msa0333980:CDS |
| TTACGGAGGAGAGGGAGTTT+AGG | 0.308680 | 2_4:-52058629 | None:intergenic |
| CTCATTTCAAATATGTTGTT+TGG | 0.318442 | 2_4:-52062693 | None:intergenic |
| AACTCCAAGCCAGGCACGTT+TGG | 0.323970 | 2_4:-52063538 | None:intergenic |
| GCAAAATAGAGAAGTCTCTT+TGG | 0.324116 | 2_4:+52058384 | None:intergenic |
| CATGCAATGCCGTTGTTGTT+TGG | 0.334037 | 2_4:+52062601 | Msa0333980:CDS |
| TGGATTTGCCTGCTGGATTT+CGG | 0.338280 | 2_4:+52061684 | Msa0333980:CDS |
| CAGGGTCTTAAACGTTCAAT+TGG | 0.342316 | 2_4:+52063506 | Msa0333980:intron |
| ACACAGCATCCACAAATTTA+CGG | 0.348932 | 2_4:-52061637 | None:intergenic |
| TGTTCTTCAGCACAGCATTC+AGG | 0.350694 | 2_4:+52063144 | Msa0333980:CDS |
| GAAGGGATGGATGAGTTCAT+TGG | 0.350804 | 2_4:-52058581 | None:intergenic |
| AATGCAGTTGTTTCTGGGCT+TGG | 0.351608 | 2_4:+52063663 | Msa0333980:CDS |
| GTTTCTGGGCTTGGTCTCTT+GGG | 0.363561 | 2_4:+52063672 | Msa0333980:CDS |
| CAAAATAGAGAAGTCTCTTT+GGG | 0.370205 | 2_4:+52058385 | None:intergenic |
| AGAGAAGTCTCTTTGGGATT+GGG | 0.378430 | 2_4:+52058391 | None:intergenic |
| TAGAGAAGTCTCTTTGGGAT+TGG | 0.390738 | 2_4:+52058390 | None:intergenic |
| AGTTTACAAATCGGAAAGAT+AGG | 0.391754 | 2_4:+52062441 | Msa0333980:CDS |
| CCGTATTTACCTTTCATAAC+CGG | 0.395087 | 2_4:-52058791 | None:intergenic |
| AACAGCCATCATCCTCAAAA+TGG | 0.395533 | 2_4:+52063628 | Msa0333980:CDS |
| CAAAGAATGCAGTTGTTTCT+GGG | 0.400070 | 2_4:+52063658 | Msa0333980:CDS |
| GAAGCGGAAGGAGGCGCGGC+CGG | 0.402187 | 2_4:-52058755 | None:intergenic |
| TTTAAGTGCGGGTGCAGTAC+AGG | 0.403623 | 2_4:+52062794 | Msa0333980:CDS |
| CCGTTCAAGCAGCGAGGAAC+CGG | 0.407507 | 2_4:-52058720 | None:intergenic |
| GCGTGAGACGACATCGTTTA+GGG | 0.407867 | 2_4:-52058533 | None:intergenic |
| CATAACCGGATTAATGTTAC+CGG | 0.413040 | 2_4:-52058777 | None:intergenic |
| GAAGTATGCGTCTTCTAAAC+AGG | 0.414202 | 2_4:-52061461 | None:intergenic |
| TGAAATGAGCTATCCTCTTA+GGG | 0.414318 | 2_4:+52062707 | Msa0333980:CDS |
| AAATTCAGTAATAATATTGT+AGG | 0.416783 | 2_4:-52063940 | None:intergenic |
| CTTGCTCCTTGTCGATCATA+TGG | 0.419050 | 2_4:+52062627 | Msa0333980:CDS |
| CGCGTGAGACGACATCGTTT+AGG | 0.420756 | 2_4:-52058534 | None:intergenic |
| TTCTGGCTGCTGCTCTAGGA+GGG | 0.421378 | 2_4:+52063881 | Msa0333980:three_prime_UTR |
| ACTATCATGGATTTGCCTGC+TGG | 0.422360 | 2_4:+52061677 | Msa0333980:CDS |
| ATTGTTGAGAGTGGAGAGGA+AGG | 0.425313 | 2_4:-52058447 | None:intergenic |
| CAGGATCAGCGTAGATTCTT+CGG | 0.428852 | 2_4:+52063784 | Msa0333980:exon |
| AAGCCTGCTGGCAGTTGGCC+TGG | 0.430509 | 2_4:-52061844 | None:intergenic |
| TGGTTTCTGGCTGCTGCTCT+AGG | 0.435012 | 2_4:+52063877 | Msa0333980:three_prime_UTR |
| GCTATTTGACCGTAAATTTG+TGG | 0.435761 | 2_4:+52061628 | Msa0333980:intron |
| CGCTTCCGGTAACATTAATC+CGG | 0.439389 | 2_4:+52058772 | Msa0333980:CDS |
| TGATACTGCTGTATTGTCCT+TGG | 0.440868 | 2_4:+52063854 | Msa0333980:three_prime_UTR |
| AAAGGTAAATACGGTGCGTT+TGG | 0.441403 | 2_4:+52058800 | Msa0333980:CDS |
| TACTTTGATGACTTTGATGA+TGG | 0.442659 | 2_4:+52061417 | Msa0333980:CDS |
| ACTTCCAAACGTGCCTGGCT+TGG | 0.443805 | 2_4:+52063534 | Msa0333980:CDS |
| AGTAATAATATTGTAGGTGA+TGG | 0.444728 | 2_4:-52063934 | None:intergenic |
| TATCAAGATCTTTCATTGGC+AGG | 0.445171 | 2_4:+52061892 | Msa0333980:CDS |
| TGCAGGTCAAATTCCCTAAG+AGG | 0.447055 | 2_4:-52062720 | None:intergenic |
| GGACTATCAAGATCTTTCAT+TGG | 0.448462 | 2_4:+52061888 | Msa0333980:CDS |
| CCGGTTCCTCGCTGCTTGAA+CGG | 0.449237 | 2_4:+52058720 | Msa0333980:CDS |
| CTTGGTTAGCTCAGCCCAAA+TGG | 0.451387 | 2_4:+52061800 | Msa0333980:CDS |
| AAGGGATGGATGAGTTCATT+GGG | 0.454914 | 2_4:-52058580 | None:intergenic |
| GTCTGCCTCAACTCCAAGCC+AGG | 0.456238 | 2_4:-52063547 | None:intergenic |
| TGGAGTTGAGGCAGACCCAC+TGG | 0.456643 | 2_4:+52063554 | Msa0333980:CDS |
| TACTGCTGTATTGTCCTTGG+TGG | 0.459021 | 2_4:+52063857 | Msa0333980:three_prime_UTR |
| GAGAGACTTCCAAACGTGCC+TGG | 0.463019 | 2_4:+52063529 | Msa0333980:CDS |
| GAGAGGAAGGAGAAGAAGAT+AGG | 0.464856 | 2_4:-52058434 | None:intergenic |
| ATCAGTTATGGTGGTGGTGA+TGG | 0.468563 | 2_4:+52061366 | Msa0333980:CDS |
| ATATCGCTGTCGACATCGGC+GGG | 0.471125 | 2_4:-52058692 | None:intergenic |
| GGGTTGGTTGATCCCTCTAT+GGG | 0.472792 | 2_4:+52058411 | Msa0333980:five_prime_UTR |
| CAAGACGGCGGTGACGGTTA+CGG | 0.473141 | 2_4:-52058646 | None:intergenic |
| CGGATTAATGTTACCGGAAG+CGG | 0.473328 | 2_4:-52058771 | None:intergenic |
| CACATAGCAGTTGATATCTC+AGG | 0.479279 | 2_4:-52063073 | None:intergenic |
| CTTTATTGACAGCTAGCCAC+TGG | 0.479923 | 2_4:+52061315 | Msa0333980:intron |
| GTAATAATATTGTAGGTGAT+GGG | 0.482515 | 2_4:-52063933 | None:intergenic |
| TGAACGGTGTTTCGCTGCTC+CGG | 0.487700 | 2_4:+52058736 | Msa0333980:CDS |
| ATGCCAGGCCAACTGCCAGC+AGG | 0.495863 | 2_4:+52061841 | Msa0333980:CDS |
| CGGTAGGCTGCTCTGTGTGG+TGG | 0.496241 | 2_4:+52062417 | Msa0333980:CDS |
| CCGGTTATGAAAGGTAAATA+CGG | 0.497596 | 2_4:+52058791 | Msa0333980:CDS |
| GGTGATGGAGGTGATGATAA+TGG | 0.499387 | 2_4:+52061381 | Msa0333980:CDS |
| CTGCTATGTGGATTTGATAG+AGG | 0.504429 | 2_4:+52063086 | Msa0333980:CDS |
| AGGGTCTTAAACGTTCAATT+GGG | 0.504991 | 2_4:+52063507 | Msa0333980:intron |
| ATTTCGGCAAGCTTATGAAA+TGG | 0.506671 | 2_4:+52061700 | Msa0333980:CDS |
| CGGGAGAAGCGGACCACGAT+CGG | 0.509858 | 2_4:-52058673 | None:intergenic |
| GCTGCTGAGTTGTGCATGGT+TGG | 0.511086 | 2_4:+52062771 | Msa0333980:CDS |
| GGTCTCTTGGGCATCAAACA+AGG | 0.512113 | 2_4:+52063684 | Msa0333980:CDS |
| TGGATGCTGTGTTGAATGAA+TGG | 0.518394 | 2_4:+52061648 | Msa0333980:CDS |
| GAAATAAGCCTGCTGGCAGT+TGG | 0.522286 | 2_4:-52061849 | None:intergenic |
| GAGGAGAGGGAGTTTAGGGA+AGG | 0.522922 | 2_4:-52058624 | None:intergenic |
| ATTGGAAAGATAATCAGTTA+TGG | 0.523781 | 2_4:+52061354 | Msa0333980:CDS |
| TTTCTGGCTGCTGCTCTAGG+AGG | 0.530235 | 2_4:+52063880 | Msa0333980:three_prime_UTR |
| AAGTCTCTTTGGGATTGGGT+TGG | 0.530290 | 2_4:+52058395 | Msa0333980:five_prime_UTR |
| AACATTAATCCGGTTATGAA+AGG | 0.530557 | 2_4:+52058782 | Msa0333980:CDS |
| CAAGGGAATGCAGATGTGTC+TGG | 0.532654 | 2_4:+52063702 | Msa0333980:CDS |
| GACTTTGATGATGGTGATGA+GGG | 0.532919 | 2_4:+52061426 | Msa0333980:CDS |
| TCTGGCTGCTGCTCTAGGAG+GGG | 0.534093 | 2_4:+52063882 | Msa0333980:three_prime_UTR |
| GATGGTGATGAGGGAGATGA+AGG | 0.535109 | 2_4:+52061435 | Msa0333980:CDS |
| TGCATGGTTGGTTTAAGTGC+GGG | 0.537705 | 2_4:+52062783 | Msa0333980:CDS |
| ACGTGCCTGGCTTGGAGTTG+AGG | 0.540692 | 2_4:+52063542 | Msa0333980:CDS |
| CTTTAGGATTAAGCAAGAGT+GGG | 0.542954 | 2_4:+52062545 | Msa0333980:intron |
| GAAAATATCGCTGTCGACAT+CGG | 0.543487 | 2_4:-52058696 | None:intergenic |
| GTCGACATCGGCGGGAGAAG+CGG | 0.545373 | 2_4:-52058684 | None:intergenic |
| AAGACGCATACTTCTTCAAG+AGG | 0.549712 | 2_4:+52061470 | Msa0333980:CDS |
| CTTCGATTTCTCGAGCGTAA+CGG | 0.550925 | 2_4:-52058825 | None:intergenic |
| AGCAGTAATGCACTTGGCTA+TGG | 0.551775 | 2_4:+52063026 | Msa0333980:CDS |
| ACTTTAGGATTAAGCAAGAG+TGG | 0.552123 | 2_4:+52062544 | Msa0333980:intron |
| GGTAGGCTGCTCTGTGTGGT+GGG | 0.552612 | 2_4:+52062418 | Msa0333980:CDS |
| GGGTGCATTGTCAAACACTT+TGG | 0.559747 | 2_4:+52062815 | Msa0333980:CDS |
| GGATAACAAGACGGCGGTGA+CGG | 0.559797 | 2_4:-52058652 | None:intergenic |
| AATTCTTAGCAATGAATGCC+AGG | 0.562493 | 2_4:+52061826 | Msa0333980:CDS |
| TCGACGAGCTTTGGGAGCTG+AGG | 0.566927 | 2_4:-52063733 | None:intergenic |
| CTGAGATATCAACTGCTATG+TGG | 0.569147 | 2_4:+52063074 | Msa0333980:CDS |
| AGAAACCTATACATGAAAGC+AGG | 0.569162 | 2_4:-52062377 | None:intergenic |
| TTAAGTGCGGGTGCAGTACA+GGG | 0.569520 | 2_4:+52062795 | Msa0333980:CDS |
| TCTATTAGAGCAAGTTGCTA+CGG | 0.569531 | 2_4:+52062397 | Msa0333980:CDS |
| TTTATTGACAGCTAGCCACT+GGG | 0.570110 | 2_4:+52061316 | Msa0333980:intron |
| CAAGGCTGCTGAGTTGTGCA+TGG | 0.572049 | 2_4:+52062767 | Msa0333980:CDS |
| TGAATGGCAAAGGACTATCA+TGG | 0.572451 | 2_4:+52061664 | Msa0333980:CDS |
| TAAGCTTGCCGAAATCCAGC+AGG | 0.573123 | 2_4:-52061692 | None:intergenic |
| CATATGATCGACAAGGAGCA+AGG | 0.573804 | 2_4:-52062626 | None:intergenic |
| AAGAACTGAATTGTTGAGAG+TGG | 0.574354 | 2_4:-52058456 | None:intergenic |
| GGTGACGGTTACGGAGGAGA+GGG | 0.577402 | 2_4:-52058637 | None:intergenic |
| CTGAATTGTTGAGAGTGGAG+AGG | 0.579781 | 2_4:-52058451 | None:intergenic |
| ACCGGAAGCGGAAGGAGGCG+CGG | 0.580831 | 2_4:-52058759 | None:intergenic |
| TGTGGTGGGAGTTTACAAAT+CGG | 0.581274 | 2_4:+52062432 | Msa0333980:CDS |
| TGACTTTGATGATGGTGATG+AGG | 0.586108 | 2_4:+52061425 | Msa0333980:CDS |
| GGAAAGATAATCAGTTATGG+TGG | 0.588023 | 2_4:+52061357 | Msa0333980:CDS |
| GGATGGATGAGTTCATTGGG+AGG | 0.588310 | 2_4:-52058577 | None:intergenic |
| AGTTATGGTGGTGGTGATGG+AGG | 0.594111 | 2_4:+52061369 | Msa0333980:CDS |
| AGAAGAAGATAGGCCCATAG+AGG | 0.594653 | 2_4:-52058424 | None:intergenic |
| AGTTCATCTGACTGAGCCAG+TGG | 0.595407 | 2_4:-52063570 | None:intergenic |
| AATATCGCTGTCGACATCGG+CGG | 0.596536 | 2_4:-52058693 | None:intergenic |
| CGGTGACGGTTACGGAGGAG+AGG | 0.603340 | 2_4:-52058638 | None:intergenic |
| AGTGCATTACTGCTCACAGT+TGG | 0.605764 | 2_4:-52063017 | None:intergenic |
| GTCTCTTGGGCATCAAACAA+GGG | 0.607736 | 2_4:+52063685 | Msa0333980:CDS |
| TTAGAGCAAGTTGCTACGGT+AGG | 0.608583 | 2_4:+52062401 | Msa0333980:CDS |
| AAGTAACAAGTCTGCGCCTG+AGG | 0.609651 | 2_4:+52058868 | Msa0333980:CDS |
| GAAGAAGATAGGCCCATAGA+GGG | 0.609825 | 2_4:-52058423 | None:intergenic |
| GTGCATGGTTGGTTTAAGTG+CGG | 0.616394 | 2_4:+52062782 | Msa0333980:CDS |
| GAGACGACATCGTTTAGGGA+TGG | 0.621378 | 2_4:-52058529 | None:intergenic |
| CTACGGTAGGCTGCTCTGTG+TGG | 0.624582 | 2_4:+52062414 | Msa0333980:CDS |
| TAATAATATTGTAGGTGATG+GGG | 0.630018 | 2_4:-52063932 | None:intergenic |
| ATGTTACCGGAAGCGGAAGG+AGG | 0.631148 | 2_4:-52058764 | None:intergenic |
| CTGTGTTGAATGAATGGCAA+AGG | 0.635333 | 2_4:+52061654 | Msa0333980:CDS |
| ATGTGGATTTGATAGAGGAA+TGG | 0.635556 | 2_4:+52063091 | Msa0333980:CDS |
| AAGATAATCAGTTATGGTGG+TGG | 0.635917 | 2_4:+52061360 | Msa0333980:CDS |
| ATTACTGCTCACAGTTGGAA+CGG | 0.641868 | 2_4:-52063012 | None:intergenic |
| GACGGCGGTGACGGTTACGG+AGG | 0.646221 | 2_4:-52058643 | None:intergenic |
| ATATGATCGACAAGGAGCAA+GGG | 0.646370 | 2_4:-52062625 | None:intergenic |
| ATTTCCAGAAAACTACCGCA+AGG | 0.647382 | 2_4:+52061867 | Msa0333980:CDS |
| GCCGTCTTGTTATCCGATCG+TGG | 0.647592 | 2_4:+52058660 | Msa0333980:CDS |
| AATATTGTAGGTGATGGGGA+CGG | 0.651643 | 2_4:-52063928 | None:intergenic |
| ACTGTGAGCAGTAATGCACT+TGG | 0.654487 | 2_4:+52063020 | Msa0333980:CDS |
| AAAGATCTTGATAGTCCTTG+CGG | 0.654748 | 2_4:-52061882 | None:intergenic |
| ACCACGATCGGATAACAAGA+CGG | 0.656119 | 2_4:-52058661 | None:intergenic |
| AGCAAGGGACCAAACAACAA+CGG | 0.657203 | 2_4:-52062610 | None:intergenic |
| TATTGACAGCTAGCCACTGG+GGG | 0.657914 | 2_4:+52061318 | Msa0333980:intron |
| GTTCATCTGACTGAGCCAGT+GGG | 0.661752 | 2_4:-52063569 | None:intergenic |
| TTAATGTTACCGGAAGCGGA+AGG | 0.680051 | 2_4:-52058767 | None:intergenic |
| GTGTTTCCATATGATCGACA+AGG | 0.689294 | 2_4:-52062633 | None:intergenic |
| GGTGATGAGGGAGATGAAGG+TGG | 0.707528 | 2_4:+52061438 | Msa0333980:CDS |
| TTATTGACAGCTAGCCACTG+GGG | 0.720563 | 2_4:+52061317 | Msa0333980:intron |
| CATTGCATGCTGCTGCAGTG+AGG | 0.725407 | 2_4:-52062587 | None:intergenic |
| GCAGCAGCCAGAAACCACCA+AGG | 0.727389 | 2_4:-52063871 | None:intergenic |
| GAAACACCGTTCAAGCAGCG+AGG | 0.728116 | 2_4:-52058726 | None:intergenic |
| ACGATCGGATAACAAGACGG+CGG | 0.806476 | 2_4:-52058658 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACATCAAAATAAAATATTA+AGG | - | chr2_4:52060240-52060259 | None:intergenic | 10.0% |
| !!! | CTTTTTATGTTTTTTTTATT+TGG | + | chr2_4:52061263-52061282 | Msa0333980:intron | 10.0% |
| !!! | TAACTAAAATTATGATTTTA+GGG | + | chr2_4:52061777-52061796 | Msa0333980:intron | 10.0% |
| !! | AGAAAAAAAAAAACATAAAT+GGG | - | chr2_4:52063987-52064006 | None:intergenic | 10.0% |
| !! | AAGAAAAAAAAAAACATAAA+TGG | - | chr2_4:52063988-52064007 | None:intergenic | 10.0% |
| !! | AATTAATTATTAAACTTCAG+TGG | + | chr2_4:52059082-52059101 | Msa0333980:intron | 15.0% |
| !! | ATTGAATTATCATTGTTAAA+CGG | + | chr2_4:52059262-52059281 | Msa0333980:intron | 15.0% |
| !!! | AAAAAAAAAAAGTATGTGTT+TGG | - | chr2_4:52059327-52059346 | None:intergenic | 15.0% |
| !!! | AAAATTAATCTGTTTGTTAT+GGG | + | chr2_4:52059742-52059761 | Msa0333980:intron | 15.0% |
| !!! | GTTTTTTTTATGCAAATATT+AGG | + | chr2_4:52059939-52059958 | Msa0333980:intron | 15.0% |
| !! | AGAAAAAGGATATATTATTA+AGG | + | chr2_4:52060319-52060338 | Msa0333980:intron | 15.0% |
| !! | CAAAACATATTAAAATACAA+CGG | - | chr2_4:52060439-52060458 | None:intergenic | 15.0% |
| !! | AAGCTAATATAAAAATAAAG+CGG | + | chr2_4:52061032-52061051 | Msa0333980:intron | 15.0% |
| !!! | CTAACTAAAATTATGATTTT+AGG | + | chr2_4:52061776-52061795 | Msa0333980:intron | 15.0% |
| !! | ATTCAAGATATAAGAAAATT+TGG | + | chr2_4:52061952-52061971 | Msa0333980:intron | 15.0% |
| !!! | TATATAAAATTATTTTGCAC+AGG | + | chr2_4:52062342-52062361 | Msa0333980:intron | 15.0% |
| !! | AAATTCAGTAATAATATTGT+AGG | - | chr2_4:52063943-52063962 | None:intergenic | 15.0% |
| !!! | TATTATTACTGAATTTTTTC+AGG | + | chr2_4:52063947-52063966 | Msa0333980:three_prime_UTR | 15.0% |
| !!! | ATTATTACTGAATTTTTTCA+GGG | + | chr2_4:52063948-52063967 | Msa0333980:three_prime_UTR | 15.0% |
| !! | AACACAAACAATATAATTCA+AGG | - | chr2_4:52059003-52059022 | None:intergenic | 20.0% |
| !! | TTAAATACATGTTCTACTAA+TGG | - | chr2_4:52059037-52059056 | None:intergenic | 20.0% |
| !!! | GAAAATTAATCTGTTTGTTA+TGG | + | chr2_4:52059741-52059760 | Msa0333980:intron | 20.0% |
| !!! | AAATATTAGGTTGTTTGTTT+AGG | + | chr2_4:52059952-52059971 | Msa0333980:intron | 20.0% |
| !!! | CAGTTTTCTTTTTTAGAAAA+AGG | + | chr2_4:52060305-52060324 | Msa0333980:intron | 20.0% |
| !! | ATCACTACAATTTATAATCT+GGG | + | chr2_4:52060533-52060552 | Msa0333980:intron | 20.0% |
| !! | TAATTAGTGAAATGATTTCT+AGG | + | chr2_4:52060951-52060970 | Msa0333980:intron | 20.0% |
| !! | AAATGTATTATGAATCCAAA+TGG | + | chr2_4:52061153-52061172 | Msa0333980:intron | 20.0% |
| !! | TATTTGATTAAATCTGTACA+AGG | - | chr2_4:52061187-52061206 | None:intergenic | 20.0% |
| !! | CATTTATGTTATTAAATTGC+AGG | + | chr2_4:52061503-52061522 | Msa0333980:intron | 20.0% |
| !!! | AAAGGTATTTGAACAAAAAT+GGG | - | chr2_4:52062033-52062052 | None:intergenic | 20.0% |
| !!! | TTGTCTATTTTGAAAAGATA+TGG | + | chr2_4:52062468-52062487 | Msa0333980:intron | 20.0% |
| !! | AAAAGATATGGAAGTTTATT+GGG | + | chr2_4:52062480-52062499 | Msa0333980:intron | 20.0% |
| !!! | GTTAACTTTATTTTGACTTT+AGG | + | chr2_4:52062529-52062548 | Msa0333980:intron | 20.0% |
| ! | TTTCTTTCTTCACTAGAATT+AGG | + | chr2_4:52058904-52058923 | Msa0333980:intron | 25.0% |
| ! | TTCTTTCTTCACTAGAATTA+GGG | + | chr2_4:52058905-52058924 | Msa0333980:intron | 25.0% |
| ! | GTCGTTATAATCGTAAAAAA+TGG | + | chr2_4:52059149-52059168 | Msa0333980:intron | 25.0% |
| ! | TTGAATGTAATCACATGTAA+CGG | + | chr2_4:52059177-52059196 | Msa0333980:intron | 25.0% |
| !! | AGGTACTTAATAATTTGTAG+AGG | + | chr2_4:52059227-52059246 | Msa0333980:intron | 25.0% |
| !! | CTTAATAATTTGTAGAGGAT+TGG | + | chr2_4:52059232-52059251 | Msa0333980:intron | 25.0% |
| ! | TAAAATGATTCTGTCTGTTA+TGG | + | chr2_4:52059803-52059822 | Msa0333980:intron | 25.0% |
| ! | AAAATGATTCTGTCTGTTAT+GGG | + | chr2_4:52059804-52059823 | Msa0333980:intron | 25.0% |
| !! | TGTGAAGTATCAATTTGTTT+AGG | + | chr2_4:52059984-52060003 | Msa0333980:intron | 25.0% |
| ! | TTCAATTAAGGTAATTCCTA+AGG | - | chr2_4:52060062-52060081 | None:intergenic | 25.0% |
| ! | GTGATCAAATGATTCAATTA+AGG | - | chr2_4:52060074-52060093 | None:intergenic | 25.0% |
| ! | TCTAGCAAGAATTATATTGT+AGG | + | chr2_4:52060122-52060141 | Msa0333980:intron | 25.0% |
| ! | AACATATTAAAATACAACGG+AGG | - | chr2_4:52060436-52060455 | None:intergenic | 25.0% |
| !! | TATGTTTTGTCAAAGAAACT+TGG | + | chr2_4:52060450-52060469 | Msa0333980:intron | 25.0% |
| ! | CATCACTACAATTTATAATC+TGG | + | chr2_4:52060532-52060551 | Msa0333980:intron | 25.0% |
| ! | AATGCAGATAAAATAAGCAA+AGG | + | chr2_4:52060722-52060741 | Msa0333980:intron | 25.0% |
| ! | ATAAATTAACGAACATCAAG+TGG | + | chr2_4:52060778-52060797 | Msa0333980:intron | 25.0% |
| ! | TAAATTAACGAACATCAAGT+GGG | + | chr2_4:52060779-52060798 | Msa0333980:intron | 25.0% |
| !! | ATGTTTATACTTTGTTTCTC+TGG | + | chr2_4:52060893-52060912 | Msa0333980:intron | 25.0% |
| !! | TGTTTATACTTTGTTTCTCT+GGG | + | chr2_4:52060894-52060913 | Msa0333980:intron | 25.0% |
| ! | GCTGTCAATAAAGTATAAAA+AGG | - | chr2_4:52061308-52061327 | None:intergenic | 25.0% |
| ! | ATTGGAAAGATAATCAGTTA+TGG | + | chr2_4:52061354-52061373 | Msa0333980:CDS | 25.0% |
| ! | TTTACAGTTTATGCTTGTTT+AGG | + | chr2_4:52061731-52061750 | Msa0333980:intron | 25.0% |
| !!! | TCATAATTTTAGTTAGTACG+CGG | - | chr2_4:52061772-52061791 | None:intergenic | 25.0% |
| !!! | AAAATTATGATTTTAGGGCT+TGG | + | chr2_4:52061782-52061801 | Msa0333980:intron | 25.0% |
| ! | AGGTAATCTCAATTATGTTT+CGG | + | chr2_4:52061912-52061931 | Msa0333980:intron | 25.0% |
| !!! | GAAAGGTATTTGAACAAAAA+TGG | - | chr2_4:52062034-52062053 | None:intergenic | 25.0% |
| !!! | TTTTATCCTGAAAGTATAAC+AGG | + | chr2_4:52062133-52062152 | Msa0333980:intron | 25.0% |
| !! | TTTATCCTGAAAGTATAACA+GGG | + | chr2_4:52062134-52062153 | Msa0333980:intron | 25.0% |
| ! | TCATCAAATCTTGAATATGA+TGG | + | chr2_4:52062264-52062283 | Msa0333980:intron | 25.0% |
| !! | AGATTGATGAATATTCCTTT+TGG | + | chr2_4:52062287-52062306 | Msa0333980:intron | 25.0% |
| ! | GAAAAGATATGGAAGTTTAT+TGG | + | chr2_4:52062479-52062498 | Msa0333980:intron | 25.0% |
| ! | AAAGATATGGAAGTTTATTG+GGG | + | chr2_4:52062481-52062500 | Msa0333980:intron | 25.0% |
| ! | CTCATTTCAAATATGTTGTT+TGG | - | chr2_4:52062696-52062715 | None:intergenic | 25.0% |
| ! | TTTCCTCCTATTAAATAAGT+TGG | + | chr2_4:52063174-52063193 | Msa0333980:intron | 25.0% |
| ! | TTCCTCCTATTAAATAAGTT+GGG | + | chr2_4:52063175-52063194 | Msa0333980:intron | 25.0% |
| ! | AAATGCCCAACTTATTTAAT+AGG | - | chr2_4:52063183-52063202 | None:intergenic | 25.0% |
| ! | TGAAAGGAAACAATACTTAT+TGG | + | chr2_4:52063246-52063265 | Msa0333980:intron | 25.0% |
| !!! | ACTTGGTAACATTTTCTAAA+TGG | - | chr2_4:52063352-52063371 | None:intergenic | 25.0% |
| !!! | TTACCAAGTTTTGTATGTAT+TGG | + | chr2_4:52063363-52063382 | Msa0333980:intron | 25.0% |
| ! | ATTCCAATACATACAAAACT+TGG | - | chr2_4:52063369-52063388 | None:intergenic | 25.0% |
| !!! | ACTTGGTAACATTTTCTAAA+TGG | - | chr2_4:52063352-52063371 | None:intergenic | 25.0% |
| !!! | TTACCAAGTTTTGTATGTAT+TGG | + | chr2_4:52063363-52063382 | Msa0333980:intron | 25.0% |
| ! | ATTCCAATACATACAAAACT+TGG | - | chr2_4:52063369-52063388 | None:intergenic | 25.0% |
| !!! | ACTATTGTTGAATTTTGATG+AGG | + | chr2_4:52063452-52063471 | Msa0333980:intron | 25.0% |
| !! | TTTATTTGAAATGTCCTACA+GGG | + | chr2_4:52063488-52063507 | Msa0333980:intron | 25.0% |
| !! | CTTTGATATAAACCATTTTG+AGG | - | chr2_4:52063643-52063662 | None:intergenic | 25.0% |
| !!! | TGTCAAATTTTGTTGATTAC+TGG | + | chr2_4:52063823-52063842 | Msa0333980:three_prime_UTR | 25.0% |
| ! | TAATAATATTGTAGGTGATG+GGG | - | chr2_4:52063935-52063954 | None:intergenic | 25.0% |
| ! | GTAATAATATTGTAGGTGAT+GGG | - | chr2_4:52063936-52063955 | None:intergenic | 25.0% |
| ! | AGTAATAATATTGTAGGTGA+TGG | - | chr2_4:52063937-52063956 | None:intergenic | 25.0% |
| GAAAGAGAGAAAGTGAAAAA+CGG | - | chr2_4:52058495-52058514 | None:intergenic | 30.0% | |
| !!! | TTGGTGATAAGGTTTTAGAA+GGG | - | chr2_4:52058601-52058620 | None:intergenic | 30.0% |
| !!! | TTTGGTGATAAGGTTTTAGA+AGG | - | chr2_4:52058602-52058621 | None:intergenic | 30.0% |
| AACATTAATCCGGTTATGAA+AGG | + | chr2_4:52058782-52058801 | Msa0333980:CDS | 30.0% | |
| AAAGAAATATGACAAACCTC+AGG | - | chr2_4:52058887-52058906 | None:intergenic | 30.0% | |
| TTATTAAACTTCAGTGGCTT+AGG | + | chr2_4:52059088-52059107 | Msa0333980:intron | 30.0% | |
| !!! | GCACACTTTTTCATTATTAC+CGG | - | chr2_4:52059535-52059554 | None:intergenic | 30.0% |
| TTATGCAAGATGTGTTGTAT+TGG | + | chr2_4:52059614-52059633 | Msa0333980:intron | 30.0% | |
| ATCGTGAAAACTTATGATGT+TGG | + | chr2_4:52059886-52059905 | Msa0333980:intron | 30.0% | |
| AGCAAGAATTATATTGTAGG+AGG | + | chr2_4:52060125-52060144 | Msa0333980:intron | 30.0% | |
| GTTGCTAGCCAAAATAATAA+AGG | + | chr2_4:52060154-52060173 | Msa0333980:intron | 30.0% | |
| AATATTTGTTTGGCCTACAT+CGG | + | chr2_4:52060186-52060205 | Msa0333980:intron | 30.0% | |
| ! | TTTGTTGTCGAAGATATGTT+CGG | + | chr2_4:52060597-52060616 | Msa0333980:intron | 30.0% |
| !! | AGCTACTATTTTGTTACTTC+TGG | + | chr2_4:52060643-52060662 | Msa0333980:intron | 30.0% |
| !! | TATTTTGTTACTTCTGGTTG+CGG | + | chr2_4:52060649-52060668 | Msa0333980:intron | 30.0% |
| AGATAAAATAAGCAAAGGTG+AGG | + | chr2_4:52060727-52060746 | Msa0333980:intron | 30.0% | |
| GATAAAATAAGCAAAGGTGA+GGG | + | chr2_4:52060728-52060747 | Msa0333980:intron | 30.0% | |
| !!! | GTATTTCAGTTTTTTACCTC+TGG | - | chr2_4:52060930-52060949 | None:intergenic | 30.0% |
| ! | ATTTTTCCTTCCCAATAAGT+GGG | - | chr2_4:52060997-52061016 | None:intergenic | 30.0% |
| ! | TATTTTTCCTTCCCAATAAG+TGG | - | chr2_4:52060998-52061017 | None:intergenic | 30.0% |
| AGAATTAACAAAGACTCCAA+TGG | - | chr2_4:52061245-52061264 | None:intergenic | 30.0% | |
| ! | TACTTTGATGACTTTGATGA+TGG | + | chr2_4:52061417-52061436 | Msa0333980:CDS | 30.0% |
| !! | TGTTTAGGTTGTAAAGCATT+TGG | + | chr2_4:52061746-52061765 | Msa0333980:intron | 30.0% |
| TGCTAAGAATTTCACCATTT+GGG | - | chr2_4:52061817-52061836 | None:intergenic | 30.0% | |
| TTGCTAAGAATTTCACCATT+TGG | - | chr2_4:52061818-52061837 | None:intergenic | 30.0% | |
| AAATTCATGATTCAGAAGCA+AGG | - | chr2_4:52062009-52062028 | None:intergenic | 30.0% | |
| ! | TCTCTCATTAAGATTTTCCT+CGG | - | chr2_4:52062093-52062112 | None:intergenic | 30.0% |
| ! | GGCTATATATTTTGCTTTCA+TGG | + | chr2_4:52062155-52062174 | Msa0333980:intron | 30.0% |
| ATACAACAATACACTCCAAA+AGG | - | chr2_4:52062305-52062324 | None:intergenic | 30.0% | |
| AGTTTACAAATCGGAAAGAT+AGG | + | chr2_4:52062441-52062460 | Msa0333980:CDS | 30.0% | |
| !! | AGTTCAATGCTTTTTGTTCA+AGG | + | chr2_4:52062749-52062768 | Msa0333980:CDS | 30.0% |
| AAACACTTTGGCTAAGAAAA+AGG | + | chr2_4:52062827-52062846 | Msa0333980:CDS | 30.0% | |
| AATGCTATTGAACATAAGCT+GGG | - | chr2_4:52062876-52062895 | None:intergenic | 30.0% | |
| !! | ATCTAGAGTTTTACTTGTGT+TGG | + | chr2_4:52062916-52062935 | Msa0333980:intron | 30.0% |
| ATCTGCATACAATTCATGTA+TGG | - | chr2_4:52062983-52063002 | None:intergenic | 30.0% | |
| TTTCCTTTCAACAGGATAAA+GGG | - | chr2_4:52063236-52063255 | None:intergenic | 30.0% | |
| ! | AAGTATTGTTTCCTTTCAAC+AGG | - | chr2_4:52063244-52063263 | None:intergenic | 30.0% |
| ! | GTAACATTTTCTAAATGGAG+TGG | - | chr2_4:52063347-52063366 | None:intergenic | 30.0% |
| ! | GTAACATTTTCTAAATGGAG+TGG | - | chr2_4:52063347-52063366 | None:intergenic | 30.0% |
| ! | TTTTGATGAGGTATGTATTG+AGG | + | chr2_4:52063464-52063483 | Msa0333980:intron | 30.0% |
| TTTGATGAGGTATGTATTGA+GGG | + | chr2_4:52063465-52063484 | Msa0333980:intron | 30.0% | |
| ! | GTTTATTTGAAATGTCCTAC+AGG | + | chr2_4:52063487-52063506 | Msa0333980:intron | 30.0% |
| !! | ATAAACCATTTTGAGGATGA+TGG | - | chr2_4:52063636-52063655 | None:intergenic | 30.0% |
| AAGAACTGAATTGTTGAGAG+TGG | - | chr2_4:52058459-52058478 | None:intergenic | 35.0% | |
| !!! | TGATAAGGTTTTAGAAGGGA+TGG | - | chr2_4:52058597-52058616 | None:intergenic | 35.0% |
| CATAACCGGATTAATGTTAC+CGG | - | chr2_4:52058780-52058799 | None:intergenic | 35.0% | |
| CCGTATTTACCTTTCATAAC+CGG | - | chr2_4:52058794-52058813 | None:intergenic | 35.0% | |
| CCGGTTATGAAAGGTAAATA+CGG | + | chr2_4:52058791-52058810 | Msa0333980:CDS | 35.0% | |
| TGTCTGTGTAAGTATGTGTT+TGG | - | chr2_4:52059365-52059384 | None:intergenic | 35.0% | |
| !!! | TATTTTTTCCAACTTTCCGC+CGG | + | chr2_4:52059513-52059532 | Msa0333980:intron | 35.0% |
| !!! | CACTTTTTCATTATTACCGG+CGG | - | chr2_4:52059532-52059551 | None:intergenic | 35.0% |
| !!! | GTGTTTTTGGTGTCTGAAAT+TGG | + | chr2_4:52059695-52059714 | Msa0333980:intron | 35.0% |
| TGTTATGGGAGATTACATGT+TGG | + | chr2_4:52059756-52059775 | Msa0333980:intron | 35.0% | |
| GTTATGGGAGATTACATGTT+GGG | + | chr2_4:52059757-52059776 | Msa0333980:intron | 35.0% | |
| ! | AGAATCATTTTACGTGTCCA+AGG | - | chr2_4:52059795-52059814 | None:intergenic | 35.0% |
| TGAAAACTTATGATGTTGGC+CGG | + | chr2_4:52059890-52059909 | Msa0333980:intron | 35.0% | |
| CTTGCTAGAAGAATAACTGA+TGG | - | chr2_4:52060111-52060130 | None:intergenic | 35.0% | |
| ! | AGGCCAAACAAATATTTTCC+CGG | - | chr2_4:52060182-52060201 | None:intergenic | 35.0% |
| TCGAAGATATGTTCGGAAAT+GGG | + | chr2_4:52060604-52060623 | Msa0333980:intron | 35.0% | |
| ! | TTTGAAGCATTCCCACTTAT+TGG | + | chr2_4:52060983-52061002 | Msa0333980:intron | 35.0% |
| ! | TTGAAGCATTCCCACTTATT+GGG | + | chr2_4:52060984-52061003 | Msa0333980:intron | 35.0% |
| !! | TACAAGGTTGATACACCATT+TGG | - | chr2_4:52061171-52061190 | None:intergenic | 35.0% |
| GGAAAGATAATCAGTTATGG+TGG | + | chr2_4:52061357-52061376 | Msa0333980:CDS | 35.0% | |
| AAGATAATCAGTTATGGTGG+TGG | + | chr2_4:52061360-52061379 | Msa0333980:CDS | 35.0% | |
| TAGCAACGTCTATTTCACAT+AGG | - | chr2_4:52061537-52061556 | None:intergenic | 35.0% | |
| GCTATTTGACCGTAAATTTG+TGG | + | chr2_4:52061628-52061647 | Msa0333980:intron | 35.0% | |
| ACACAGCATCCACAAATTTA+CGG | - | chr2_4:52061640-52061659 | None:intergenic | 35.0% | |
| ATTTCGGCAAGCTTATGAAA+TGG | + | chr2_4:52061700-52061719 | Msa0333980:CDS | 35.0% | |
| AATTCTTAGCAATGAATGCC+AGG | + | chr2_4:52061826-52061845 | Msa0333980:CDS | 35.0% | |
| ! | AAAGATCTTGATAGTCCTTG+CGG | - | chr2_4:52061885-52061904 | None:intergenic | 35.0% |
| GGACTATCAAGATCTTTCAT+TGG | + | chr2_4:52061888-52061907 | Msa0333980:CDS | 35.0% | |
| TATCAAGATCTTTCATTGGC+AGG | + | chr2_4:52061892-52061911 | Msa0333980:CDS | 35.0% | |
| CTGTAGCTTCTACTATAGAA+AGG | - | chr2_4:52062051-52062070 | None:intergenic | 35.0% | |
| ! | TCTCATTAAGATTTTCCTCG+GGG | - | chr2_4:52062091-52062110 | None:intergenic | 35.0% |
| ! | CTCTCATTAAGATTTTCCTC+GGG | - | chr2_4:52062092-52062111 | None:intergenic | 35.0% |
| TATAGCCCTGTTATACTTTC+AGG | - | chr2_4:52062142-52062161 | None:intergenic | 35.0% | |
| AGGACATCTATTCAATTCAC+AGG | - | chr2_4:52062211-52062230 | None:intergenic | 35.0% | |
| AGAAACCTATACATGAAAGC+AGG | - | chr2_4:52062380-52062399 | None:intergenic | 35.0% | |
| TCTATTAGAGCAAGTTGCTA+CGG | + | chr2_4:52062397-52062416 | Msa0333980:CDS | 35.0% | |
| !! | ACTTTAGGATTAAGCAAGAG+TGG | + | chr2_4:52062544-52062563 | Msa0333980:intron | 35.0% |
| !! | CTTTAGGATTAAGCAAGAGT+GGG | + | chr2_4:52062545-52062564 | Msa0333980:intron | 35.0% |
| TTGAAATGAGCTATCCTCTT+AGG | + | chr2_4:52062706-52062725 | Msa0333980:CDS | 35.0% | |
| TGAAATGAGCTATCCTCTTA+GGG | + | chr2_4:52062707-52062726 | Msa0333980:CDS | 35.0% | |
| ACTTTGGCTAAGAAAAAGGA+AGG | + | chr2_4:52062831-52062850 | Msa0333980:CDS | 35.0% | |
| GAATGCTATTGAACATAAGC+TGG | - | chr2_4:52062877-52062896 | None:intergenic | 35.0% | |
| ATGTGGATTTGATAGAGGAA+TGG | + | chr2_4:52063091-52063110 | Msa0333980:CDS | 35.0% | |
| GTTCGTCAGTTTGATGTTAT+TGG | + | chr2_4:52063113-52063132 | Msa0333980:CDS | 35.0% | |
| TGCCCAACTTATTTAATAGG+AGG | - | chr2_4:52063180-52063199 | None:intergenic | 35.0% | |
| GTTTCCTTTCAACAGGATAA+AGG | - | chr2_4:52063237-52063256 | None:intergenic | 35.0% | |
| AGGGTCTTAAACGTTCAATT+GGG | + | chr2_4:52063507-52063526 | Msa0333980:intron | 35.0% | |
| ! | TCAAAGAATGCAGTTGTTTC+TGG | + | chr2_4:52063657-52063676 | Msa0333980:CDS | 35.0% |
| !! | CAAAGAATGCAGTTGTTTCT+GGG | + | chr2_4:52063658-52063677 | Msa0333980:CDS | 35.0% |
| AAAAAGGATCGTACGGAAAA+AGG | + | chr2_4:52063755-52063774 | Msa0333980:CDS | 35.0% | |
| AAGGGATGGATGAGTTCATT+GGG | - | chr2_4:52058583-52058602 | None:intergenic | 40.0% | |
| !!! | AGGGAAGGTTTTTGGTGATA+AGG | - | chr2_4:52058612-52058631 | None:intergenic | 40.0% |
| GAAAATATCGCTGTCGACAT+CGG | - | chr2_4:52058699-52058718 | None:intergenic | 40.0% | |
| AAAGGTAAATACGGTGCGTT+TGG | + | chr2_4:52058800-52058819 | Msa0333980:CDS | 40.0% | |
| GCGACAATAGAGGAAAATTC+AGG | + | chr2_4:52059199-52059218 | Msa0333980:intron | 40.0% | |
| AGAGGAAAATTCAGGAGTGA+AGG | + | chr2_4:52059207-52059226 | Msa0333980:intron | 40.0% | |
| !! | TATGTGTTTGGTGTCTGTGT+CGG | - | chr2_4:52059315-52059334 | None:intergenic | 40.0% |
| CATATTTGTCAGTGTCGTGT+TGG | + | chr2_4:52059432-52059451 | Msa0333980:intron | 40.0% | |
| TGTGCAAATGTTTGCATGCT+TGG | + | chr2_4:52059584-52059603 | Msa0333980:intron | 40.0% | |
| TCGCTAATTGAGAAGACTGA+AGG | + | chr2_4:52059673-52059692 | Msa0333980:intron | 40.0% | |
| !!! | GAGAAGACTGAAGGTGTTTT+TGG | + | chr2_4:52059682-52059701 | Msa0333980:intron | 40.0% |
| TGTTATGGGAGATTACGTGT+TGG | + | chr2_4:52059818-52059837 | Msa0333980:intron | 40.0% | |
| GTTATGGGAGATTACGTGTT+GGG | + | chr2_4:52059819-52059838 | Msa0333980:intron | 40.0% | |
| ! | ACTGCAATTTTACGTGTCCA+AGG | - | chr2_4:52059857-52059876 | None:intergenic | 40.0% |
| AGCCAAAATAATAAAGGCCC+CGG | + | chr2_4:52060160-52060179 | Msa0333980:intron | 40.0% | |
| ! | GCCAAACAAATATTTTCCCG+GGG | - | chr2_4:52060180-52060199 | None:intergenic | 40.0% |
| ! | GGCCAAACAAATATTTTCCC+GGG | - | chr2_4:52060181-52060200 | None:intergenic | 40.0% |
| GGCATGACACTAACAAAAGA+AGG | - | chr2_4:52060491-52060510 | None:intergenic | 40.0% | |
| GTAGTGATGTTGTGCAAAGT+GGG | - | chr2_4:52060521-52060540 | None:intergenic | 40.0% | |
| TGTAGTGATGTTGTGCAAAG+TGG | - | chr2_4:52060522-52060541 | None:intergenic | 40.0% | |
| TTTATAATCTGGGCCATGCA+TGG | + | chr2_4:52060543-52060562 | Msa0333980:intron | 40.0% | |
| GTCGAAGATATGTTCGGAAA+TGG | + | chr2_4:52060603-52060622 | Msa0333980:intron | 40.0% | |
| TTATTTCGGTGAAGGGGAAA+GGG | + | chr2_4:52060676-52060695 | Msa0333980:intron | 40.0% | |
| TAGCAGTGAAAAGCCTAACA+GGG | - | chr2_4:52060757-52060776 | None:intergenic | 40.0% | |
| ATAGCAGTGAAAAGCCTAAC+AGG | - | chr2_4:52060758-52060777 | None:intergenic | 40.0% | |
| ATTAACGAACATCAAGTGGG+AGG | + | chr2_4:52060782-52060801 | Msa0333980:intron | 40.0% | |
| TTAACGAACATCAAGTGGGA+GGG | + | chr2_4:52060783-52060802 | Msa0333980:intron | 40.0% | |
| AAGAGGGAGATCCTAGAAAA+TGG | + | chr2_4:52060814-52060833 | Msa0333980:intron | 40.0% | |
| AGAGGGAGATCCTAGAAAAT+GGG | + | chr2_4:52060815-52060834 | Msa0333980:intron | 40.0% | |
| GATCCTAGAAAATGGGAAAG+AGG | + | chr2_4:52060822-52060841 | Msa0333980:intron | 40.0% | |
| ! | CTTCCTCTTTCCCATTTTCT+AGG | - | chr2_4:52060828-52060847 | None:intergenic | 40.0% |
| CTAGAAAATGGGAAAGAGGA+AGG | + | chr2_4:52060826-52060845 | Msa0333980:intron | 40.0% | |
| TTTAAAGGTCCTGTGGTTCA+GGG | - | chr2_4:52060858-52060877 | None:intergenic | 40.0% | |
| ! | AACCACAGGACCTTTAAAGA+GGG | + | chr2_4:52060860-52060879 | Msa0333980:intron | 40.0% |
| !!! | TTTTTTACCTCTGGTGCCAA+AGG | - | chr2_4:52060921-52060940 | None:intergenic | 40.0% |
| TTTATTGACAGCTAGCCACT+GGG | + | chr2_4:52061316-52061335 | Msa0333980:intron | 40.0% | |
| !! | TGACTTTGATGATGGTGATG+AGG | + | chr2_4:52061425-52061444 | Msa0333980:CDS | 40.0% |
| !! | GACTTTGATGATGGTGATGA+GGG | + | chr2_4:52061426-52061445 | Msa0333980:CDS | 40.0% |
| GAAGTATGCGTCTTCTAAAC+AGG | - | chr2_4:52061464-52061483 | None:intergenic | 40.0% | |
| AAGACGCATACTTCTTCAAG+AGG | + | chr2_4:52061470-52061489 | Msa0333980:CDS | 40.0% | |
| TTTCATTTGACGTCTCCTGA+AGG | + | chr2_4:52061573-52061592 | Msa0333980:intron | 40.0% | |
| ACAACACAAGGACAAAATGG+CGG | - | chr2_4:52061604-52061623 | None:intergenic | 40.0% | |
| TGGATGCTGTGTTGAATGAA+TGG | + | chr2_4:52061648-52061667 | Msa0333980:CDS | 40.0% | |
| CTGTGTTGAATGAATGGCAA+AGG | + | chr2_4:52061654-52061673 | Msa0333980:CDS | 40.0% | |
| TGAATGGCAAAGGACTATCA+TGG | + | chr2_4:52061664-52061683 | Msa0333980:CDS | 40.0% | |
| !! | TTTTCTGGAAATAAGCCTGC+TGG | - | chr2_4:52061859-52061878 | None:intergenic | 40.0% |
| ATTTCCAGAAAACTACCGCA+AGG | + | chr2_4:52061867-52061886 | Msa0333980:CDS | 40.0% | |
| TGATTCAGAAGCAAGGACAT+GGG | - | chr2_4:52062002-52062021 | None:intergenic | 40.0% | |
| ATGATTCAGAAGCAAGGACA+TGG | - | chr2_4:52062003-52062022 | None:intergenic | 40.0% | |
| TAGTAGAAGCTACAGAAGAG+AGG | + | chr2_4:52062056-52062075 | Msa0333980:intron | 40.0% | |
| ! | CTCATTAAGATTTTCCTCGG+GGG | - | chr2_4:52062090-52062109 | None:intergenic | 40.0% |
| ! | CAAGTCTTATCAGACATGAG+AGG | - | chr2_4:52062231-52062250 | None:intergenic | 40.0% |
| CAGATCCTGCTTTCATGTAT+AGG | + | chr2_4:52062372-52062391 | Msa0333980:CDS | 40.0% | |
| ! | TGTGGTGGGAGTTTACAAAT+CGG | + | chr2_4:52062432-52062451 | Msa0333980:CDS | 40.0% |
| ATATGATCGACAAGGAGCAA+GGG | - | chr2_4:52062628-52062647 | None:intergenic | 40.0% | |
| GTGTTTCCATATGATCGACA+AGG | - | chr2_4:52062636-52062655 | None:intergenic | 40.0% | |
| !! | AGCATTGAACTCTCTTTTGC+AGG | - | chr2_4:52062740-52062759 | None:intergenic | 40.0% |
| TGGCTAAGAAAAAGGAAGGA+AGG | + | chr2_4:52062835-52062854 | Msa0333980:CDS | 40.0% | |
| ! | AAAAAGGAAGGAAGGTGTGT+AGG | + | chr2_4:52062843-52062862 | Msa0333980:intron | 40.0% |
| ! | AAAAGGAAGGAAGGTGTGTA+GGG | + | chr2_4:52062844-52062863 | Msa0333980:intron | 40.0% |
| ATTACTGCTCACAGTTGGAA+CGG | - | chr2_4:52063015-52063034 | None:intergenic | 40.0% | |
| ! | CACATAGCAGTTGATATCTC+AGG | - | chr2_4:52063076-52063095 | None:intergenic | 40.0% |
| CTGAGATATCAACTGCTATG+TGG | + | chr2_4:52063074-52063093 | Msa0333980:CDS | 40.0% | |
| CTGCTATGTGGATTTGATAG+AGG | + | chr2_4:52063086-52063105 | Msa0333980:CDS | 40.0% | |
| GTACCCTTTATCCTGTTGAA+AGG | + | chr2_4:52063230-52063249 | Msa0333980:intron | 40.0% | |
| ! | TTGAACGTTTAAGACCCTGT+AGG | - | chr2_4:52063505-52063524 | None:intergenic | 40.0% |
| CAGGGTCTTAAACGTTCAAT+TGG | + | chr2_4:52063506-52063525 | Msa0333980:intron | 40.0% | |
| AACAGCCATCATCCTCAAAA+TGG | + | chr2_4:52063628-52063647 | Msa0333980:CDS | 40.0% | |
| !!! | ATCCTTTTTCGACGAGCTTT+GGG | - | chr2_4:52063744-52063763 | None:intergenic | 40.0% |
| TGATACTGCTGTATTGTCCT+TGG | + | chr2_4:52063854-52063873 | Msa0333980:three_prime_UTR | 40.0% | |
| GATGGGGACGGAAAAAATTT+GGG | - | chr2_4:52063919-52063938 | None:intergenic | 40.0% | |
| TGATGGGGACGGAAAAAATT+TGG | - | chr2_4:52063920-52063939 | None:intergenic | 40.0% | |
| !! | AATATTGTAGGTGATGGGGA+CGG | - | chr2_4:52063931-52063950 | None:intergenic | 40.0% |
| !! | AAGTCTCTTTGGGATTGGGT+TGG | + | chr2_4:52058395-52058414 | Msa0333980:five_prime_UTR | 45.0% |
| GAAGAAGATAGGCCCATAGA+GGG | - | chr2_4:52058426-52058445 | None:intergenic | 45.0% | |
| AGAAGAAGATAGGCCCATAG+AGG | - | chr2_4:52058427-52058446 | None:intergenic | 45.0% | |
| GAGAGGAAGGAGAAGAAGAT+AGG | - | chr2_4:52058437-52058456 | None:intergenic | 45.0% | |
| ATTGTTGAGAGTGGAGAGGA+AGG | - | chr2_4:52058450-52058469 | None:intergenic | 45.0% | |
| CTGAATTGTTGAGAGTGGAG+AGG | - | chr2_4:52058454-52058473 | None:intergenic | 45.0% | |
| GAAGGGATGGATGAGTTCAT+TGG | - | chr2_4:52058584-52058603 | None:intergenic | 45.0% | |
| ! | GGGAGTTTAGGGAAGGTTTT+TGG | - | chr2_4:52058620-52058639 | None:intergenic | 45.0% |
| ACCACGATCGGATAACAAGA+CGG | - | chr2_4:52058664-52058683 | None:intergenic | 45.0% | |
| ! | GTCGACAGCGATATTTTCTC+CGG | + | chr2_4:52058701-52058720 | Msa0333980:CDS | 45.0% |
| TTAATGTTACCGGAAGCGGA+AGG | - | chr2_4:52058770-52058789 | None:intergenic | 45.0% | |
| CGGATTAATGTTACCGGAAG+CGG | - | chr2_4:52058774-52058793 | None:intergenic | 45.0% | |
| CGCTTCCGGTAACATTAATC+CGG | + | chr2_4:52058772-52058791 | Msa0333980:CDS | 45.0% | |
| CTTCGATTTCTCGAGCGTAA+CGG | - | chr2_4:52058828-52058847 | None:intergenic | 45.0% | |
| ACGACTTGTCAGTGCTTCAT+AGG | - | chr2_4:52059134-52059153 | None:intergenic | 45.0% | |
| ACATGTAACGGCGACAATAG+AGG | + | chr2_4:52059189-52059208 | Msa0333980:intron | 45.0% | |
| ! | CGTGTTGGTATCAGAAGTGT+AGG | + | chr2_4:52059447-52059466 | Msa0333980:intron | 45.0% |
| ! | CAGAAGTGTAGGTGCTACAA+AGG | + | chr2_4:52059458-52059477 | Msa0333980:intron | 45.0% |
| CATTATTACCGGCGGAAAGT+TGG | - | chr2_4:52059524-52059543 | None:intergenic | 45.0% | |
| ACACGCATTCACAGTTGTGA+TGG | + | chr2_4:52059649-52059668 | Msa0333980:intron | 45.0% | |
| CACGCATTCACAGTTGTGAT+GGG | + | chr2_4:52059650-52059669 | Msa0333980:intron | 45.0% | |
| TTGGGTTAAACGTGTTGCCT+TGG | + | chr2_4:52059775-52059794 | Msa0333980:intron | 45.0% | |
| TTGGGTTAAACGTGTTGCCT+TGG | + | chr2_4:52059775-52059794 | Msa0333980:intron | 45.0% | |
| !! | CTTGTGTGAAGTATCGTGTC+TGG | + | chr2_4:52060013-52060032 | Msa0333980:intron | 45.0% |
| AGTATCGTGTCTGGATCAAC+CGG | + | chr2_4:52060022-52060041 | Msa0333980:intron | 45.0% | |
| ! | TAAGGCACTAATGCGAAGAC+CGG | - | chr2_4:52060044-52060063 | None:intergenic | 45.0% |
| GCCAAAATAATAAAGGCCCC+GGG | + | chr2_4:52060161-52060180 | Msa0333980:intron | 45.0% | |
| ! | TCCCGGGGCCTTTATTATTT+TGG | - | chr2_4:52060165-52060184 | None:intergenic | 45.0% |
| GCCCCGGGAAAATATTTGTT+TGG | + | chr2_4:52060176-52060195 | Msa0333980:intron | 45.0% | |
| TGCAGGATTATCACCGATGT+AGG | - | chr2_4:52060202-52060221 | None:intergenic | 45.0% | |
| ATGTTGTGCAAAGTGGGTAG+CGG | - | chr2_4:52060515-52060534 | None:intergenic | 45.0% | |
| CTTTCCCCTTCACCGAAATA+AGG | - | chr2_4:52060677-52060696 | None:intergenic | 45.0% | |
| CTTATTTCGGTGAAGGGGAA+AGG | + | chr2_4:52060675-52060694 | Msa0333980:intron | 45.0% | |
| TATTTCGGTGAAGGGGAAAG+GGG | + | chr2_4:52060677-52060696 | Msa0333980:intron | 45.0% | |
| TAACGAACATCAAGTGGGAG+GGG | + | chr2_4:52060784-52060803 | Msa0333980:intron | 45.0% | |
| TTAAAGGTCCTGTGGTTCAG+GGG | - | chr2_4:52060857-52060876 | None:intergenic | 45.0% | |
| ! | CTTTAAAGGTCCTGTGGTTC+AGG | - | chr2_4:52060859-52060878 | None:intergenic | 45.0% |
| ! | GAACCACAGGACCTTTAAAG+AGG | + | chr2_4:52060859-52060878 | Msa0333980:intron | 45.0% |
| ! | ACCACAGGACCTTTAAAGAG+GGG | + | chr2_4:52060861-52060880 | Msa0333980:intron | 45.0% |
| ! | AGGACCTTTAAAGAGGGGAA+GGG | + | chr2_4:52060866-52060885 | Msa0333980:intron | 45.0% |
| !! | CTTTGTTTCTCTGGGACCTT+TGG | + | chr2_4:52060902-52060921 | Msa0333980:intron | 45.0% |
| AGCATTCCCACTTATTGGGA+AGG | + | chr2_4:52060988-52061007 | Msa0333980:intron | 45.0% | |
| CAGGTGTGTTGCATACAGTA+TGG | - | chr2_4:52061210-52061229 | None:intergenic | 45.0% | |
| TACTGTATGCAACACACCTG+TGG | + | chr2_4:52061210-52061229 | Msa0333980:intron | 45.0% | |
| CTTTATTGACAGCTAGCCAC+TGG | + | chr2_4:52061315-52061334 | Msa0333980:intron | 45.0% | |
| TTATTGACAGCTAGCCACTG+GGG | + | chr2_4:52061317-52061336 | Msa0333980:intron | 45.0% | |
| !! | ATCAGTTATGGTGGTGGTGA+TGG | + | chr2_4:52061366-52061385 | Msa0333980:CDS | 45.0% |
| !! | GGTGATGGAGGTGATGATAA+TGG | + | chr2_4:52061381-52061400 | Msa0333980:CDS | 45.0% |
| AAAATGGCGGTCATACCTTC+AGG | - | chr2_4:52061591-52061610 | None:intergenic | 45.0% | |
| !! | GCCATTTTGTCCTTGTGTTG+TGG | + | chr2_4:52061603-52061622 | Msa0333980:intron | 45.0% |
| GCCACAACACAAGGACAAAA+TGG | - | chr2_4:52061607-52061626 | None:intergenic | 45.0% | |
| CAAATAGCTGCCACAACACA+AGG | - | chr2_4:52061616-52061635 | None:intergenic | 45.0% | |
| ACTATCATGGATTTGCCTGC+TGG | + | chr2_4:52061677-52061696 | Msa0333980:CDS | 45.0% | |
| TGGATTTGCCTGCTGGATTT+CGG | + | chr2_4:52061684-52061703 | Msa0333980:CDS | 45.0% | |
| ! | TAGTCCTTGCGGTAGTTTTC+TGG | - | chr2_4:52061874-52061893 | None:intergenic | 45.0% |
| GGACATGGGGTTAAAGTTTG+AGG | - | chr2_4:52061988-52062007 | None:intergenic | 45.0% | |
| GATTCAGAAGCAAGGACATG+GGG | - | chr2_4:52062001-52062020 | None:intergenic | 45.0% | |
| TTAGAGCAAGTTGCTACGGT+AGG | + | chr2_4:52062401-52062420 | Msa0333980:CDS | 45.0% | |
| ! | CATGCAATGCCGTTGTTGTT+TGG | + | chr2_4:52062601-52062620 | Msa0333980:CDS | 45.0% |
| AGCAAGGGACCAAACAACAA+CGG | - | chr2_4:52062613-52062632 | None:intergenic | 45.0% | |
| CATATGATCGACAAGGAGCA+AGG | - | chr2_4:52062629-52062648 | None:intergenic | 45.0% | |
| CTTGCTCCTTGTCGATCATA+TGG | + | chr2_4:52062627-52062646 | Msa0333980:CDS | 45.0% | |
| TGCAGGTCAAATTCCCTAAG+AGG | - | chr2_4:52062723-52062742 | None:intergenic | 45.0% | |
| !! | GTGCATGGTTGGTTTAAGTG+CGG | + | chr2_4:52062782-52062801 | Msa0333980:CDS | 45.0% |
| !! | TGCATGGTTGGTTTAAGTGC+GGG | + | chr2_4:52062783-52062802 | Msa0333980:CDS | 45.0% |
| GGGTGCATTGTCAAACACTT+TGG | + | chr2_4:52062815-52062834 | Msa0333980:CDS | 45.0% | |
| AGTGCATTACTGCTCACAGT+TGG | - | chr2_4:52063020-52063039 | None:intergenic | 45.0% | |
| ACTGTGAGCAGTAATGCACT+TGG | + | chr2_4:52063020-52063039 | Msa0333980:CDS | 45.0% | |
| AGCAGTAATGCACTTGGCTA+TGG | + | chr2_4:52063026-52063045 | Msa0333980:CDS | 45.0% | |
| ! | CTTGGCTATGGTGCTTTTCT+TGG | + | chr2_4:52063038-52063057 | Msa0333980:CDS | 45.0% |
| TGTTCTTCAGCACAGCATTC+AGG | + | chr2_4:52063144-52063163 | Msa0333980:CDS | 45.0% | |
| !! | AATGCAGTTGTTTCTGGGCT+TGG | + | chr2_4:52063663-52063682 | Msa0333980:CDS | 45.0% |
| GTCTCTTGGGCATCAAACAA+GGG | + | chr2_4:52063685-52063704 | Msa0333980:CDS | 45.0% | |
| !!! | GATCCTTTTTCGACGAGCTT+TGG | - | chr2_4:52063745-52063764 | None:intergenic | 45.0% |
| CTCGTCGAAAAAGGATCGTA+CGG | + | chr2_4:52063748-52063767 | Msa0333980:CDS | 45.0% | |
| CAGGATCAGCGTAGATTCTT+CGG | + | chr2_4:52063784-52063803 | Msa0333980:exon | 45.0% | |
| TACTGCTGTATTGTCCTTGG+TGG | + | chr2_4:52063857-52063876 | Msa0333980:three_prime_UTR | 45.0% | |
| ! | GTATTGTCCTTGGTGGTTTC+TGG | + | chr2_4:52063864-52063883 | Msa0333980:three_prime_UTR | 45.0% |
| !! | TGGGTTGGTTGATCCCTCTA+TGG | + | chr2_4:52058410-52058429 | Msa0333980:five_prime_UTR | 50.0% |
| !! | GGGTTGGTTGATCCCTCTAT+GGG | + | chr2_4:52058411-52058430 | Msa0333980:five_prime_UTR | 50.0% |
| GAGACGACATCGTTTAGGGA+TGG | - | chr2_4:52058532-52058551 | None:intergenic | 50.0% | |
| GCGTGAGACGACATCGTTTA+GGG | - | chr2_4:52058536-52058555 | None:intergenic | 50.0% | |
| GGATGGATGAGTTCATTGGG+AGG | - | chr2_4:52058580-52058599 | None:intergenic | 50.0% | |
| TACGGAGGAGAGGGAGTTTA+GGG | - | chr2_4:52058631-52058650 | None:intergenic | 50.0% | |
| TTACGGAGGAGAGGGAGTTT+AGG | - | chr2_4:52058632-52058651 | None:intergenic | 50.0% | |
| ACGATCGGATAACAAGACGG+CGG | - | chr2_4:52058661-52058680 | None:intergenic | 50.0% | |
| AATATCGCTGTCGACATCGG+CGG | - | chr2_4:52058696-52058715 | None:intergenic | 50.0% | |
| AAGTAACAAGTCTGCGCCTG+AGG | + | chr2_4:52058868-52058887 | Msa0333980:CDS | 50.0% | |
| ! | TATGATGTTGGCCGGTTTCG+TGG | + | chr2_4:52059898-52059917 | Msa0333980:intron | 50.0% |
| GGTCTTCGCATTAGTGCCTT+AGG | + | chr2_4:52060043-52060062 | Msa0333980:intron | 50.0% | |
| TGTTGTGCAAAGTGGGTAGC+GGG | - | chr2_4:52060514-52060533 | None:intergenic | 50.0% | |
| AGTAGCTCAGCTCACAGTTG+TGG | - | chr2_4:52060630-52060649 | None:intergenic | 50.0% | |
| !! | CTGGTTGCGGTGCCTTATTT+CGG | + | chr2_4:52060662-52060681 | Msa0333980:intron | 50.0% |
| !! | CGGTGCCTTATTTCGGTGAA+GGG | + | chr2_4:52060669-52060688 | Msa0333980:intron | 50.0% |
| !! | GGTGCCTTATTTCGGTGAAG+GGG | + | chr2_4:52060670-52060689 | Msa0333980:intron | 50.0% |
| AACGAACATCAAGTGGGAGG+GGG | + | chr2_4:52060785-52060804 | Msa0333980:intron | 50.0% | |
| AGGAATATCCCCTGAACCAC+AGG | + | chr2_4:52060846-52060865 | Msa0333980:intron | 50.0% | |
| ! | TCCCCTCTTTAAAGGTCCTG+TGG | - | chr2_4:52060865-52060884 | None:intergenic | 50.0% |
| ! | CAGGACCTTTAAAGAGGGGA+AGG | + | chr2_4:52060865-52060884 | Msa0333980:intron | 50.0% |
| ! | GGACCTTTAAAGAGGGGAAG+GGG | + | chr2_4:52060867-52060886 | Msa0333980:intron | 50.0% |
| CCAATGGTATGAGTAGCCAC+AGG | - | chr2_4:52061229-52061248 | None:intergenic | 50.0% | |
| CCTGTGGCTACTCATACCAT+TGG | + | chr2_4:52061226-52061245 | Msa0333980:intron | 50.0% | |
| TATTGACAGCTAGCCACTGG+GGG | + | chr2_4:52061318-52061337 | Msa0333980:intron | 50.0% | |
| !! | AGTTATGGTGGTGGTGATGG+AGG | + | chr2_4:52061369-52061388 | Msa0333980:CDS | 50.0% |
| ! | GATGGTGATGAGGGAGATGA+AGG | + | chr2_4:52061435-52061454 | Msa0333980:CDS | 50.0% |
| TAAGCTTGCCGAAATCCAGC+AGG | - | chr2_4:52061695-52061714 | None:intergenic | 50.0% | |
| ! | CTTGGTTAGCTCAGCCCAAA+TGG | + | chr2_4:52061800-52061819 | Msa0333980:CDS | 50.0% |
| GAAATAAGCCTGCTGGCAGT+TGG | - | chr2_4:52061852-52061871 | None:intergenic | 50.0% | |
| ! | AGATTTTCCTCGGGGGACAA+TGG | - | chr2_4:52062083-52062102 | None:intergenic | 50.0% |
| TTTAAGTGCGGGTGCAGTAC+AGG | + | chr2_4:52062794-52062813 | Msa0333980:CDS | 50.0% | |
| TTAAGTGCGGGTGCAGTACA+GGG | + | chr2_4:52062795-52062814 | Msa0333980:CDS | 50.0% | |
| GTTCATCTGACTGAGCCAGT+GGG | - | chr2_4:52063572-52063591 | None:intergenic | 50.0% | |
| AGTTCATCTGACTGAGCCAG+TGG | - | chr2_4:52063573-52063592 | None:intergenic | 50.0% | |
| !! | TGTTTCTGGGCTTGGTCTCT+TGG | + | chr2_4:52063671-52063690 | Msa0333980:CDS | 50.0% |
| ! | GTTTCTGGGCTTGGTCTCTT+GGG | + | chr2_4:52063672-52063691 | Msa0333980:CDS | 50.0% |
| GGTCTCTTGGGCATCAAACA+AGG | + | chr2_4:52063684-52063703 | Msa0333980:CDS | 50.0% | |
| CAAGGGAATGCAGATGTGTC+TGG | + | chr2_4:52063702-52063721 | Msa0333980:CDS | 50.0% | |
| CTCCCAAAGCTCGTCGAAAA+AGG | + | chr2_4:52063739-52063758 | Msa0333980:CDS | 50.0% | |
| GTACGGAAAAAGGTTGCTGC+AGG | + | chr2_4:52063765-52063784 | Msa0333980:CDS | 50.0% | |
| CGCGTGAGACGACATCGTTT+AGG | - | chr2_4:52058537-52058556 | None:intergenic | 55.0% | |
| GAGGAGAGGGAGTTTAGGGA+AGG | - | chr2_4:52058627-52058646 | None:intergenic | 55.0% | |
| GGATAACAAGACGGCGGTGA+CGG | - | chr2_4:52058655-52058674 | None:intergenic | 55.0% | |
| ! | GCCGTCTTGTTATCCGATCG+TGG | + | chr2_4:52058660-52058679 | Msa0333980:CDS | 55.0% |
| ATATCGCTGTCGACATCGGC+GGG | - | chr2_4:52058695-52058714 | None:intergenic | 55.0% | |
| GAAACACCGTTCAAGCAGCG+AGG | - | chr2_4:52058729-52058748 | None:intergenic | 55.0% | |
| TGAACGGTGTTTCGCTGCTC+CGG | + | chr2_4:52058736-52058755 | Msa0333980:CDS | 55.0% | |
| ATGTTACCGGAAGCGGAAGG+AGG | - | chr2_4:52058767-52058786 | None:intergenic | 55.0% | |
| ! | TGTGTCGGTGCTTCGCAGAA+AGG | - | chr2_4:52059300-52059319 | None:intergenic | 55.0% |
| CACAGACACATCGACGACAC+TGG | + | chr2_4:52059377-52059396 | Msa0333980:intron | 55.0% | |
| CCTGTCTCATGCCACGAAAC+CGG | - | chr2_4:52059912-52059931 | None:intergenic | 55.0% | |
| GGACACGCTATTGCTGATGC+AGG | - | chr2_4:52060219-52060238 | None:intergenic | 55.0% | |
| ! | TTGTGCAAAGTGGGTAGCGG+GGG | - | chr2_4:52060512-52060531 | None:intergenic | 55.0% |
| GTTGTGCAAAGTGGGTAGCG+GGG | - | chr2_4:52060513-52060532 | None:intergenic | 55.0% | |
| GAACCGCAAACTGCCATGCA+TGG | - | chr2_4:52060559-52060578 | None:intergenic | 55.0% | |
| !! | GCGGTGCCTTATTTCGGTGA+AGG | + | chr2_4:52060668-52060687 | Msa0333980:intron | 55.0% |
| AAGGTGAGGGAGTCCCTGTT+AGG | + | chr2_4:52060741-52060760 | Msa0333980:intron | 55.0% | |
| CCTCCCCTTCCCCTCTTTAA+AGG | - | chr2_4:52060873-52060892 | None:intergenic | 55.0% | |
| ! | CCTTTAAAGAGGGGAAGGGG+AGG | + | chr2_4:52060870-52060889 | Msa0333980:intron | 55.0% |
| GGTGATGAGGGAGATGAAGG+TGG | + | chr2_4:52061438-52061457 | Msa0333980:CDS | 55.0% | |
| CATTGCATGCTGCTGCAGTG+AGG | - | chr2_4:52062590-52062609 | None:intergenic | 55.0% | |
| CAAGGCTGCTGAGTTGTGCA+TGG | + | chr2_4:52062767-52062786 | Msa0333980:CDS | 55.0% | |
| GCTGCTGAGTTGTGCATGGT+TGG | + | chr2_4:52062771-52062790 | Msa0333980:CDS | 55.0% | |
| GAGAGACTTCCAAACGTGCC+TGG | + | chr2_4:52063529-52063548 | Msa0333980:CDS | 55.0% | |
| ACTTCCAAACGTGCCTGGCT+TGG | + | chr2_4:52063534-52063553 | Msa0333980:CDS | 55.0% | |
| AACTCCAAGCCAGGCACGTT+TGG | - | chr2_4:52063541-52063560 | None:intergenic | 55.0% | |
| !! | TGGTTTCTGGCTGCTGCTCT+AGG | + | chr2_4:52063877-52063896 | Msa0333980:three_prime_UTR | 55.0% |
| !! | TTTCTGGCTGCTGCTCTAGG+AGG | + | chr2_4:52063880-52063899 | Msa0333980:three_prime_UTR | 55.0% |
| !! | TTCTGGCTGCTGCTCTAGGA+GGG | + | chr2_4:52063881-52063900 | Msa0333980:three_prime_UTR | 55.0% |
| ! | GGTGACGGTTACGGAGGAGA+GGG | - | chr2_4:52058640-52058659 | None:intergenic | 60.0% |
| ! | CAAGACGGCGGTGACGGTTA+CGG | - | chr2_4:52058649-52058668 | None:intergenic | 60.0% |
| CCGTTCAAGCAGCGAGGAAC+CGG | - | chr2_4:52058723-52058742 | None:intergenic | 60.0% | |
| CCGGTTCCTCGCTGCTTGAA+CGG | + | chr2_4:52058720-52058739 | Msa0333980:CDS | 60.0% | |
| CCGGTTTCGTGGCATGAGAC+AGG | + | chr2_4:52059909-52059928 | Msa0333980:intron | 60.0% | |
| GGGCCATGCATGGCAGTTTG+CGG | + | chr2_4:52060553-52060572 | Msa0333980:intron | 60.0% | |
| TCGGTGAAGGGGAAAGGGGT+AGG | + | chr2_4:52060681-52060700 | Msa0333980:intron | 60.0% | |
| CGGTGAAGGGGAAAGGGGTA+GGG | + | chr2_4:52060682-52060701 | Msa0333980:intron | 60.0% | |
| GGTGAAGGGGAAAGGGGTAG+GGG | + | chr2_4:52060683-52060702 | Msa0333980:intron | 60.0% | |
| ACATCAAGTGGGAGGGGGAG+AGG | + | chr2_4:52060790-52060809 | Msa0333980:intron | 60.0% | |
| TGGGAGGGGGAGAGGAAAGA+GGG | + | chr2_4:52060798-52060817 | Msa0333980:intron | 60.0% | |
| ! | TCTGGGACCTTTGGCACCAG+AGG | + | chr2_4:52060911-52060930 | Msa0333980:intron | 60.0% |
| !! | GGGGGAGGTGGTGGAGATAT+TGG | + | chr2_4:52061336-52061355 | Msa0333980:CDS | 60.0% |
| CTACGGTAGGCTGCTCTGTG+TGG | + | chr2_4:52062414-52062433 | Msa0333980:CDS | 60.0% | |
| GGTAGGCTGCTCTGTGTGGT+GGG | + | chr2_4:52062418-52062437 | Msa0333980:CDS | 60.0% | |
| !! | ACGTGCCTGGCTTGGAGTTG+AGG | + | chr2_4:52063542-52063561 | Msa0333980:CDS | 60.0% |
| GTCTGCCTCAACTCCAAGCC+AGG | - | chr2_4:52063550-52063569 | None:intergenic | 60.0% | |
| TGGAGTTGAGGCAGACCCAC+TGG | + | chr2_4:52063554-52063573 | Msa0333980:CDS | 60.0% | |
| !! | TCGACGAGCTTTGGGAGCTG+AGG | - | chr2_4:52063736-52063755 | None:intergenic | 60.0% |
| GCAGCAGCCAGAAACCACCA+AGG | - | chr2_4:52063874-52063893 | None:intergenic | 60.0% | |
| !! | TCTGGCTGCTGCTCTAGGAG+GGG | + | chr2_4:52063882-52063901 | Msa0333980:three_prime_UTR | 60.0% |
| ! | CGGTGACGGTTACGGAGGAG+AGG | - | chr2_4:52058641-52058660 | None:intergenic | 65.0% |
| CGGGAGAAGCGGACCACGAT+CGG | - | chr2_4:52058676-52058695 | None:intergenic | 65.0% | |
| GTCGACATCGGCGGGAGAAG+CGG | - | chr2_4:52058687-52058706 | None:intergenic | 65.0% | |
| AGGGGAAAGGGGTAGGGGAG+AGG | + | chr2_4:52060688-52060707 | Msa0333980:intron | 65.0% | |
| GGGGAAAGGGGTAGGGGAGA+GGG | + | chr2_4:52060689-52060708 | Msa0333980:intron | 65.0% | |
| GTGGGAGGGGGAGAGGAAAG+AGG | + | chr2_4:52060797-52060816 | Msa0333980:intron | 65.0% | |
| TGACAGCTAGCCACTGGGGG+AGG | + | chr2_4:52061321-52061340 | Msa0333980:intron | 65.0% | |
| ATCTCCACCACCTCCCCCAG+TGG | - | chr2_4:52061334-52061353 | None:intergenic | 65.0% | |
| ATGCCAGGCCAACTGCCAGC+AGG | + | chr2_4:52061841-52061860 | Msa0333980:CDS | 65.0% | |
| AAGCCTGCTGGCAGTTGGCC+TGG | - | chr2_4:52061847-52061866 | None:intergenic | 65.0% | |
| GAGAGGACCATTGTCCCCCG+AGG | + | chr2_4:52062073-52062092 | Msa0333980:intron | 65.0% | |
| CGGTAGGCTGCTCTGTGTGG+TGG | + | chr2_4:52062417-52062436 | Msa0333980:CDS | 65.0% | |
| ! | GACGGCGGTGACGGTTACGG+AGG | - | chr2_4:52058646-52058665 | None:intergenic | 70.0% |
| ACCGGAAGCGGAAGGAGGCG+CGG | - | chr2_4:52058762-52058781 | None:intergenic | 70.0% | |
| CAGCTAGCCACTGGGGGAGG+TGG | + | chr2_4:52061324-52061343 | Msa0333980:intron | 70.0% | |
| CTAGCCACTGGGGGAGGTGG+TGG | + | chr2_4:52061327-52061346 | Msa0333980:CDS | 70.0% | |
| ! | GAAGCGGAAGGAGGCGCGGC+CGG | - | chr2_4:52058758-52058777 | None:intergenic | 75.0% |
| GCCGCGCCTCCTTCCGCTTC+CGG | + | chr2_4:52058758-52058777 | Msa0333980:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 52058393 | 52064073 | 52058393 | ID=Msa0333980;Name=Msa0333980 |
| chr2_4 | mRNA | 52058393 | 52064073 | 52058393 | ID=Msa0333980-mRNA-1;Parent=Msa0333980;Name=Msa0333980-mRNA-1;_AED=0.06;_eAED=0.06;_QI=149|1|1|1|1|1|8|276|526 |
| chr2_4 | exon | 52058393 | 52058889 | 52058393 | ID=Msa0333980-mRNA-1:exon:15643;Parent=Msa0333980-mRNA-1 |
| chr2_4 | exon | 52061327 | 52061491 | 52061327 | ID=Msa0333980-mRNA-1:exon:15644;Parent=Msa0333980-mRNA-1 |
| chr2_4 | exon | 52061629 | 52061721 | 52061629 | ID=Msa0333980-mRNA-1:exon:15645;Parent=Msa0333980-mRNA-1 |
| chr2_4 | exon | 52061798 | 52061913 | 52061798 | ID=Msa0333980-mRNA-1:exon:15646;Parent=Msa0333980-mRNA-1 |
| chr2_4 | exon | 52062364 | 52062462 | 52062364 | ID=Msa0333980-mRNA-1:exon:15647;Parent=Msa0333980-mRNA-1 |
| chr2_4 | exon | 52062551 | 52062856 | 52062551 | ID=Msa0333980-mRNA-1:exon:15648;Parent=Msa0333980-mRNA-1 |
| chr2_4 | exon | 52063001 | 52063165 | 52063001 | ID=Msa0333980-mRNA-1:exon:15649;Parent=Msa0333980-mRNA-1 |
| chr2_4 | exon | 52063509 | 52064073 | 52063509 | ID=Msa0333980-mRNA-1:exon:15650;Parent=Msa0333980-mRNA-1 |
| chr2_4 | five_prime_UTR | 52058393 | 52058541 | 52058393 | ID=Msa0333980-mRNA-1:five_prime_utr;Parent=Msa0333980-mRNA-1 |
| chr2_4 | CDS | 52058542 | 52058889 | 52058542 | ID=Msa0333980-mRNA-1:cds;Parent=Msa0333980-mRNA-1 |
| chr2_4 | CDS | 52061327 | 52061491 | 52061327 | ID=Msa0333980-mRNA-1:cds;Parent=Msa0333980-mRNA-1 |
| chr2_4 | CDS | 52061629 | 52061721 | 52061629 | ID=Msa0333980-mRNA-1:cds;Parent=Msa0333980-mRNA-1 |
| chr2_4 | CDS | 52061798 | 52061913 | 52061798 | ID=Msa0333980-mRNA-1:cds;Parent=Msa0333980-mRNA-1 |
| chr2_4 | CDS | 52062364 | 52062462 | 52062364 | ID=Msa0333980-mRNA-1:cds;Parent=Msa0333980-mRNA-1 |
| chr2_4 | CDS | 52062551 | 52062856 | 52062551 | ID=Msa0333980-mRNA-1:cds;Parent=Msa0333980-mRNA-1 |
| chr2_4 | CDS | 52063001 | 52063165 | 52063001 | ID=Msa0333980-mRNA-1:cds;Parent=Msa0333980-mRNA-1 |
| chr2_4 | CDS | 52063509 | 52063797 | 52063509 | ID=Msa0333980-mRNA-1:cds;Parent=Msa0333980-mRNA-1 |
| chr2_4 | three_prime_UTR | 52063798 | 52064073 | 52063798 | ID=Msa0333980-mRNA-1:three_prime_utr;Parent=Msa0333980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
