AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0182610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0182610 MtrunA17_Chr1g0209801 91.051 257 7 1 1 241 1 257 2.67e-166 459
Msa0182610 MtrunA17_Chr1g0193661 32.639 144 88 5 62 202 74 211 7.02e-12 63.9
Msa0182610 MtrunA17_Chr4g0066351 32.639 144 88 5 62 202 74 211 7.89e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0182610 AT3G25920.1 68.511 235 50 2 17 227 24 258 4.05e-107 310

Find 78 sgRNAs with CRISPR-Local

Find 436 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAAATTGGTTTCTTCTTT+AGG 0.207614 1_4:+71261346 Msa0182610:three_prime_UTR
TCGGTTTCGGTTGGACAATT+TGG 0.209684 1_4:+71256475 Msa0182610:CDS
CAAGGAGCGAGTTGTGGTTT+TGG 0.247810 1_4:+71256557 Msa0182610:CDS
TCCTGCAATTCCTCTAAGTT+TGG 0.258498 1_4:-71256663 None:intergenic
CGCTCTTCACTCTGTCAAAA+TGG 0.262848 1_4:-71256018 None:intergenic
CTTCTCTTATTCCTGTTTCC+TGG 0.269459 1_4:+71256078 Msa0182610:CDS
CGGTTTCGGTTGGACAATTT+GGG 0.284648 1_4:+71256476 Msa0182610:CDS
TGTCATCATCATCAACAAAT+TGG 0.287088 1_4:+71261333 Msa0182610:three_prime_UTR
AGCAGCTGCTTCTCGCTTCT+TGG 0.291577 1_4:-71261273 None:intergenic
TTGCATATTTAAACAGAATC+TGG 0.313222 1_4:-71261302 None:intergenic
CGACGATTGCCCAAACTTAG+AGG 0.316218 1_4:+71256653 Msa0182610:CDS
AGATTGATGTGGACATATTT+CGG 0.336463 1_4:-71257696 None:intergenic
CTCCTTTGCTGATGTGGAAA+AGG 0.349946 1_4:-71261147 None:intergenic
CTCTTTCTTGAACCTGGTTG+TGG 0.358662 1_4:-71256500 None:intergenic
CTCTCTCGCTTCTCCATTCA+AGG 0.359377 1_4:+71256106 Msa0182610:CDS
CATCATTGAACAGTGAAATA+AGG 0.365832 1_4:-71261775 None:intergenic
TTAAGACATGGACATAGATA+TGG 0.367880 1_4:-71256374 None:intergenic
TGTTCCATCACTGTGATTCC+TGG 0.369456 1_4:+71261188 Msa0182610:CDS
CCCAAACTTAGAGGAATTGC+AGG 0.376415 1_4:+71256662 Msa0182610:CDS
TGATTCCTGGCCGTAAGAAA+TGG 0.380224 1_4:+71261201 Msa0182610:CDS
CCTGCAATTCCTCTAAGTTT+GGG 0.397805 1_4:-71256662 None:intergenic
AGGTGGATACCGAAAGTTCT+TGG 0.407096 1_4:+71261745 Msa0182610:three_prime_UTR
CTCTGTCAAAATGGAACAAA+CGG 0.412322 1_4:-71256009 None:intergenic
TTTGCTCTCTTTCTTGAACC+TGG 0.419614 1_4:-71256506 None:intergenic
AAGTTTCTCCTTTGCTGATG+TGG 0.426566 1_4:-71261153 None:intergenic
GGCACCGAACCAAGAACTTT+CGG 0.440027 1_4:-71261754 None:intergenic
AAGAAAGAGAGCAAAGAGAA+AGG 0.443452 1_4:+71256514 Msa0182610:CDS
AGAGAGGGTAACCAGGAAAC+AGG 0.445145 1_4:-71256089 None:intergenic
ATGGCTTAACCCATTTCTTA+CGG 0.452810 1_4:-71261211 None:intergenic
AACCAGCAGGTGAAAATGTT+CGG 0.456863 1_4:+71256456 Msa0182610:intron
CGATTTGTGCTGGAAACCTT+TGG 0.460118 1_4:+71261620 Msa0182610:three_prime_UTR
TAAAATGGAAGTACCTTGAA+TGG 0.460890 1_4:-71256119 None:intergenic
AGAAGGGGAAGAGGTGTCTC+TGG 0.461261 1_4:+71257746 Msa0182610:CDS
CAGGTGAAAATGTTCGGTTT+CGG 0.473561 1_4:+71256462 Msa0182610:intron
GTTTGCTTGTCGATTTGTGC+TGG 0.476311 1_4:+71261610 Msa0182610:three_prime_UTR
GACAATTTGGGTCCACAACC+AGG 0.479320 1_4:+71256488 Msa0182610:CDS
AGAAAGAGAGCAAAGAGAAA+GGG 0.484644 1_4:+71256515 Msa0182610:CDS
TGAAAATGTTCGGTTTCGGT+TGG 0.487169 1_4:+71256466 Msa0182610:CDS
AGAAGCGAGAGAGGGTAACC+AGG 0.489358 1_4:-71256096 None:intergenic
TTAACCCATTTCTTACGGCC+AGG 0.492636 1_4:-71261206 None:intergenic
GAAATATGTCCACATCAATC+TGG 0.495258 1_4:+71257698 Msa0182610:CDS
GGAACGGAAACTTCTATTGA+AGG 0.496485 1_4:+71257809 Msa0182610:CDS
AGTTTCCGTTCCCTTCCTGA+TGG 0.497026 1_4:-71257798 None:intergenic
ACTTAATAAGGTATGCATGC+TGG 0.498536 1_4:+71257669 Msa0182610:intron
AGAGCAAAGAGAAAGGGAAG+AGG 0.509714 1_4:+71256521 Msa0182610:CDS
GATTCCTGGCCGTAAGAAAT+GGG 0.511756 1_4:+71261202 Msa0182610:CDS
GATACCGAAAGTTCTTGGTT+CGG 0.514764 1_4:+71261750 Msa0182610:three_prime_UTR
GAAGATGCTGGATTTCAAGA+AGG 0.525528 1_4:+71257729 Msa0182610:CDS
AAGGAGAAACTTGAGTCTGC+TGG 0.526406 1_4:+71261164 Msa0182610:CDS
CTGGTAGACATAGAAGATGC+TGG 0.527862 1_4:+71257717 Msa0182610:CDS
AAACGTGTGATTAACCCATC+AGG 0.531753 1_4:+71257783 Msa0182610:CDS
AAGATGCTGGATTTCAAGAA+GGG 0.537870 1_4:+71257730 Msa0182610:CDS
GTTTCCGTTCCCTTCCTGAT+GGG 0.539207 1_4:-71257797 None:intergenic
TATGTAGTGTTTCTTGTACA+AGG 0.557645 1_4:+71261725 Msa0182610:three_prime_UTR
AGAGGTATTGCCGCAGGACA+AGG 0.557884 1_4:+71256539 Msa0182610:CDS
ATTAAACACACTACTACCAA+AGG 0.559616 1_4:-71261636 None:intergenic
TTGGGCAATCGTCGATAAAG+TGG 0.564517 1_4:-71256644 None:intergenic
GCAGGGAAACGTGAAAACCT+TGG 0.567301 1_4:+71256343 Msa0182610:intron
AAGAAGTTGACAATAAAAGC+TGG 0.573815 1_4:+71261122 Msa0182610:CDS
GCAGGACAAGGAGCGAGTTG+TGG 0.577933 1_4:+71256551 Msa0182610:CDS
TGGATTTCAAGAAGGGGAAG+AGG 0.578835 1_4:+71257737 Msa0182610:CDS
GAGAAAACTTCAATACAGAA+AGG 0.582990 1_4:-71261413 None:intergenic
AAGGGAAGAGGTATTGCCGC+AGG 0.588347 1_4:+71256533 Msa0182610:CDS
CTTGAATGGAGAAGCGAGAG+AGG 0.590843 1_4:-71256105 None:intergenic
GGTGTCTCTGGAGACACTGA+CGG 0.598433 1_4:+71257758 Msa0182610:CDS
GTGTGATTAACCCATCAGGA+AGG 0.611754 1_4:+71257787 Msa0182610:CDS
TTGAATGGAGAAGCGAGAGA+GGG 0.622388 1_4:-71256104 None:intergenic
CTTCTTGGCGAAGTATTCGT+CGG 0.627986 1_4:-71261258 None:intergenic
ACGGCCAGGAATCACAGTGA+TGG 0.630385 1_4:-71261192 None:intergenic
TGTGATTAACCCATCAGGAA+GGG 0.634878 1_4:+71257788 Msa0182610:CDS
TCTGGACCTGGTATCATGAG+AGG 0.634957 1_4:+71256602 Msa0182610:CDS
TCAAAACCTCTCATGATACC+AGG 0.646172 1_4:-71256608 None:intergenic
CTATGTCTACCAGATTGATG+TGG 0.650882 1_4:-71257707 None:intergenic
TTAACCCATCAGGAAGGGAA+CGG 0.658603 1_4:+71257793 Msa0182610:CDS
AGATGCTGGATTTCAAGAAG+GGG 0.662527 1_4:+71257731 Msa0182610:CDS
GTAGTGTTTCTTGTACAAGG+TGG 0.675432 1_4:+71261728 Msa0182610:three_prime_UTR
ACAACTCGCTCCTTGTCCTG+CGG 0.686055 1_4:-71256549 None:intergenic
AAACTTAGAGGAATTGCAGG+AGG 0.696930 1_4:+71256665 Msa0182610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTATATTTTATAATA+AGG + chr1_4:71261655-71261674 Msa0182610:three_prime_UTR 0.0%
!! TTTAATTAAATGTACATTTA+GGG - chr1_4:71258560-71258579 None:intergenic 10.0%
!!! TTTTAATTAAATGTACATTT+AGG - chr1_4:71258561-71258580 None:intergenic 10.0%
!!! TACACAATATATTTTTAAAA+AGG + chr1_4:71261037-71261056 Msa0182610:intron 10.0%
!! ACTAAAAAAATTAAATTCGA+AGG - chr1_4:71256191-71256210 None:intergenic 15.0%
!! AATTTCAACAATAAAACAAT+AGG - chr1_4:71256722-71256741 None:intergenic 15.0%
!!! GAAAATAATGTTTTTAACTA+TGG + chr1_4:71256759-71256778 Msa0182610:intron 15.0%
!! GAATTATATTAGGATAATTT+AGG + chr1_4:71257107-71257126 Msa0182610:intron 15.0%
!!! AAAAGCAATTATTTTATGAA+AGG + chr1_4:71257536-71257555 Msa0182610:intron 15.0%
!!! GATTATTTTAGATTAACTAT+AGG - chr1_4:71258353-71258372 None:intergenic 15.0%
!!! TATTAATCTTTTTCACTTTA+AGG + chr1_4:71259941-71259960 Msa0182610:intron 15.0%
!!! TCTAATATCATTTAGAATTT+TGG + chr1_4:71260406-71260425 Msa0182610:intron 15.0%
!!! TTTTTTTCAAGATATTTTGA+TGG - chr1_4:71261495-71261514 None:intergenic 15.0%
!!! TTTTTTTCAAGATATTTTGA+TGG - chr1_4:71261495-71261514 None:intergenic 15.0%
!! AAATAGAAATATCTTGAATG+AGG - chr1_4:71256268-71256287 None:intergenic 20.0%
!!! AATAATGTTTTTAACTATGG+CGG + chr1_4:71256762-71256781 Msa0182610:intron 20.0%
!! AACAAAACATCGTAAAAAAA+GGG - chr1_4:71257035-71257054 None:intergenic 20.0%
!! TAACAAAACATCGTAAAAAA+AGG - chr1_4:71257036-71257055 None:intergenic 20.0%
!!! GGATTTTGTTGAATTATATT+AGG + chr1_4:71257097-71257116 Msa0182610:intron 20.0%
!!! CTTTGAAAATCAACATATTA+GGG - chr1_4:71257325-71257344 None:intergenic 20.0%
!!! TCTTTGAAAATCAACATATT+AGG - chr1_4:71257326-71257345 None:intergenic 20.0%
!!! TTCACTTTTAAAAACAAATG+AGG + chr1_4:71257939-71257958 Msa0182610:intron 20.0%
!! TTTCATATTATGCCTTTAAT+CGG + chr1_4:71258053-71258072 Msa0182610:intron 20.0%
!! AAAGAGTTAAAGTTAGTTAA+TGG + chr1_4:71258210-71258229 Msa0182610:intron 20.0%
!!! TATTTTCAACAAGAGAAATA+AGG + chr1_4:71258389-71258408 Msa0182610:intron 20.0%
!! AAATATCAATTTCTGTCTAT+TGG + chr1_4:71258578-71258597 Msa0182610:intron 20.0%
!! TACCAGATAGAATATTTAAA+AGG + chr1_4:71258998-71259017 Msa0182610:intron 20.0%
!! ACCAGATAGAATATTTAAAA+GGG + chr1_4:71258999-71259018 Msa0182610:intron 20.0%
!! GAGAATTCAAGAATATAAAA+TGG + chr1_4:71259146-71259165 Msa0182610:intron 20.0%
!!! ATTTCTAAAGTGATATTTAG+CGG + chr1_4:71260678-71260697 Msa0182610:intron 20.0%
!!! TTATCAAAAAAGGTGTAATT+TGG + chr1_4:71261693-71261712 Msa0182610:three_prime_UTR 20.0%
! GAGAGAAAATGAAGTTAAAA+TGG - chr1_4:71256137-71256156 None:intergenic 25.0%
! TTATTAACAACAAAAACACG+AGG - chr1_4:71256416-71256435 None:intergenic 25.0%
!!! TCGTGTTTTTGTTGTTAATA+AGG + chr1_4:71256415-71256434 Msa0182610:intron 25.0%
! TTAGTCTATATACTACCAAA+TGG + chr1_4:71256897-71256916 Msa0182610:intron 25.0%
! TAGTCTATATACTACCAAAT+GGG + chr1_4:71256898-71256917 Msa0182610:intron 25.0%
! TCATTAGTAGGAAAAAACAA+TGG + chr1_4:71257174-71257193 Msa0182610:intron 25.0%
! CATTTCAAGATGTCAATAAA+GGG - chr1_4:71257363-71257382 None:intergenic 25.0%
! TTATTGTCTAAAGAGAATCA+TGG + chr1_4:71257387-71257406 Msa0182610:intron 25.0%
!!! TTTTGAAATGAAATCATGGA+AGG - chr1_4:71257520-71257539 None:intergenic 25.0%
!!! TTGCTTTTGAAATGAAATCA+TGG - chr1_4:71257524-71257543 None:intergenic 25.0%
!!! CTTTTAAAAACAAATGAGGA+TGG + chr1_4:71257943-71257962 Msa0182610:intron 25.0%
!! TAAGTTCAAACGCAATATTT+TGG + chr1_4:71258125-71258144 Msa0182610:intron 25.0%
!! TGAATTTGAAACTGTAAAGT+TGG + chr1_4:71258165-71258184 Msa0182610:intron 25.0%
!! TAAAGTTAGTTAATGGATGT+TGG + chr1_4:71258217-71258236 Msa0182610:intron 25.0%
!! AAAGTTAGTTAATGGATGTT+GGG + chr1_4:71258218-71258237 Msa0182610:intron 25.0%
! CTCTTGTTGAAAATATGTTT+AGG - chr1_4:71258384-71258403 None:intergenic 25.0%
! TGTTGTCTATAAATAAGAAG+AGG + chr1_4:71258414-71258433 Msa0182610:intron 25.0%
! GTTGTCTATAAATAAGAAGA+GGG + chr1_4:71258415-71258434 Msa0182610:intron 25.0%
!!! TCTTGTCATTTTAGTATAGT+CGG + chr1_4:71258461-71258480 Msa0182610:intron 25.0%
! GTATATCATTGAAGATTATG+TGG + chr1_4:71258628-71258647 Msa0182610:intron 25.0%
!!! GAGGTATTTTCATATGAAAT+AGG + chr1_4:71258746-71258765 Msa0182610:intron 25.0%
!! TTTTCATATGAAATAGGTGT+TGG + chr1_4:71258752-71258771 Msa0182610:intron 25.0%
! TTTCATATGAAATAGGTGTT+GGG + chr1_4:71258753-71258772 Msa0182610:intron 25.0%
! TGATGTGTCATAATGTTATT+AGG + chr1_4:71258858-71258877 Msa0182610:intron 25.0%
!! ACCCTTTTAAATATTCTATC+TGG - chr1_4:71259003-71259022 None:intergenic 25.0%
!! TTAAAAGGGTTTTTCTTGAA+AGG + chr1_4:71259013-71259032 Msa0182610:intron 25.0%
! AATAAAAAAGATTACCGAAC+AGG + chr1_4:71259251-71259270 Msa0182610:intron 25.0%
! ATAAAAAAGATTACCGAACA+GGG + chr1_4:71259252-71259271 Msa0182610:intron 25.0%
! AAAAGGAAAAGATGTCTTTA+TGG + chr1_4:71259326-71259345 Msa0182610:intron 25.0%
! AAAGGAAAAGATGTCTTTAT+GGG + chr1_4:71259327-71259346 Msa0182610:intron 25.0%
!! ACAATGATTTTGTTCTTCAT+TGG - chr1_4:71259358-71259377 None:intergenic 25.0%
! AACAAAATCATTGTTGAATG+CGG + chr1_4:71259364-71259383 Msa0182610:intron 25.0%
! TGTCAGATTCTAAACATATT+TGG - chr1_4:71259537-71259556 None:intergenic 25.0%
!!! TCTTTTTCACTTTAAGGATA+AGG + chr1_4:71259947-71259966 Msa0182610:intron 25.0%
!!! AATTCTATTTCTAAGTTGGT+TGG - chr1_4:71260160-71260179 None:intergenic 25.0%
!! TTCGTAGATATGAAAAGTAT+TGG - chr1_4:71260646-71260665 None:intergenic 25.0%
!! AATATTTTCCTGAGTTTATG+AGG - chr1_4:71260883-71260902 None:intergenic 25.0%
! TTGCATATTTAAACAGAATC+TGG - chr1_4:71261305-71261324 None:intergenic 25.0%
!! AACAAATTGGTTTCTTCTTT+AGG + chr1_4:71261346-71261365 Msa0182610:three_prime_UTR 25.0%
!! TAAAATGGAAGTACCTTGAA+TGG - chr1_4:71256122-71256141 None:intergenic 30.0%
AGGTGAAATTGTGATAGATA+AGG - chr1_4:71256171-71256190 None:intergenic 30.0%
ATCTTGAATGAGGTGAAAAT+GGG - chr1_4:71256258-71256277 None:intergenic 30.0%
TATCTTGAATGAGGTGAAAA+TGG - chr1_4:71256259-71256278 None:intergenic 30.0%
CGTGAGAAAATGAAATGAAA+TGG - chr1_4:71256291-71256310 None:intergenic 30.0%
ACCATTGTATTTGTATTTGC+AGG + chr1_4:71256325-71256344 Msa0182610:intron 30.0%
CCATTGTATTTGTATTTGCA+GGG + chr1_4:71256326-71256345 Msa0182610:intron 30.0%
TTAAGACATGGACATAGATA+TGG - chr1_4:71256377-71256396 None:intergenic 30.0%
!!! ATTCGCTGAATTTTAAGACA+TGG - chr1_4:71256389-71256408 None:intergenic 30.0%
TTGACAGTGTAATTCAATGA+TGG + chr1_4:71256795-71256814 Msa0182610:intron 30.0%
! AATATAATTTGCCCGCTAAT+AGG + chr1_4:71257006-71257025 Msa0182610:intron 30.0%
! TAATTTAGGATCCTACTGTT+AGG + chr1_4:71257121-71257140 Msa0182610:intron 30.0%
! AATTTAGGATCCTACTGTTA+GGG + chr1_4:71257122-71257141 Msa0182610:intron 30.0%
ATGACTTTCAAATGTGATGT+AGG - chr1_4:71257259-71257278 None:intergenic 30.0%
CCATTTCAAGATGTCAATAA+AGG - chr1_4:71257364-71257383 None:intergenic 30.0%
CCTTTATTGACATCTTGAAA+TGG + chr1_4:71257361-71257380 Msa0182610:intron 30.0%
TAAAGAGAATCATGGCATTA+TGG + chr1_4:71257395-71257414 Msa0182610:intron 30.0%
!! AAATTTAGGTATTGGAAGCT+TGG - chr1_4:71257427-71257446 None:intergenic 30.0%
AGGAAGAGAAATTTAGGTAT+TGG - chr1_4:71257435-71257454 None:intergenic 30.0%
TTTCTTTCATTCTTTGTCGT+AGG + chr1_4:71257561-71257580 Msa0182610:intron 30.0%
AGATTGATGTGGACATATTT+CGG - chr1_4:71257699-71257718 None:intergenic 30.0%
!! ACACATTACTTGTTGGTTTA+TGG + chr1_4:71257833-71257852 Msa0182610:intron 30.0%
ACATGTAAGACAACAACTAA+GGG - chr1_4:71257874-71257893 None:intergenic 30.0%
AACATGTAAGACAACAACTA+AGG - chr1_4:71257875-71257894 None:intergenic 30.0%
AGGAGTCTTTCTTGATATAT+GGG - chr1_4:71257985-71258004 None:intergenic 30.0%
ACTTTATTCACGATAGACAA+GGG - chr1_4:71258018-71258037 None:intergenic 30.0%
AACTTTATTCACGATAGACA+AGG - chr1_4:71258019-71258038 None:intergenic 30.0%
AACCAAAATTCTCCGATTAA+AGG - chr1_4:71258068-71258087 None:intergenic 30.0%
CTGTAAAGTTGGAATATAAG+AGG + chr1_4:71258176-71258195 Msa0182610:intron 30.0%
ACTTTAACTCTTTCAACCAA+CGG - chr1_4:71258203-71258222 None:intergenic 30.0%
TTTCTTTGAGCCTTACAAAA+CGG - chr1_4:71258289-71258308 None:intergenic 30.0%
!!! CTTGTCATTTTAGTATAGTC+GGG + chr1_4:71258462-71258481 Msa0182610:intron 30.0%
!!! TTGTCATTTTAGTATAGTCG+GGG + chr1_4:71258463-71258482 Msa0182610:intron 30.0%
TTAGGGAAAATTTCCTTGTA+TGG - chr1_4:71258543-71258562 None:intergenic 30.0%
ATTTCTGTCTATTGGTATCA+AGG + chr1_4:71258586-71258605 Msa0182610:intron 30.0%
TATCATTGAAGATTATGTGG+CGG + chr1_4:71258631-71258650 Msa0182610:intron 30.0%
! AATAAGAATAAAGGCACACA+TGG + chr1_4:71258655-71258674 Msa0182610:intron 30.0%
! TAACCCATTTGGTATTTTGT+TGG + chr1_4:71258904-71258923 Msa0182610:intron 30.0%
! AACCCATTTGGTATTTTGTT+GGG + chr1_4:71258905-71258924 Msa0182610:intron 30.0%
TACCCAACAAAATACCAAAT+GGG - chr1_4:71258910-71258929 None:intergenic 30.0%
ATACCCAACAAAATACCAAA+TGG - chr1_4:71258911-71258930 None:intergenic 30.0%
AAATGGAGAAGTAAGAAGAA+AGG + chr1_4:71259163-71259182 Msa0182610:intron 30.0%
AAGAAGAAAGGTGAAAGAAA+TGG + chr1_4:71259175-71259194 Msa0182610:intron 30.0%
TAAAAAAGATTACCGAACAG+GGG + chr1_4:71259253-71259272 Msa0182610:intron 30.0%
CAGAGTTTCACAATTTGTAA+TGG - chr1_4:71259429-71259448 None:intergenic 30.0%
!! TAAACATGAAGATGGATTGT+TGG + chr1_4:71259636-71259655 Msa0182610:intron 30.0%
TGTTGGATTGTATTTCAAAG+AGG + chr1_4:71259653-71259672 Msa0182610:intron 30.0%
AAGACTTCCTTTATAAGAAG+AGG + chr1_4:71259721-71259740 Msa0182610:intron 30.0%
GTATCTACCTCTTCTTATAA+AGG - chr1_4:71259731-71259750 None:intergenic 30.0%
TGCTCTACATGAATAATACT+TGG - chr1_4:71259763-71259782 None:intergenic 30.0%
AACTACTACATCAAGCTAAA+AGG + chr1_4:71259860-71259879 Msa0182610:intron 30.0%
ACTACTACATCAAGCTAAAA+GGG + chr1_4:71259861-71259880 Msa0182610:intron 30.0%
TGCTGTCTATATATAAGAAG+AGG + chr1_4:71260068-71260087 Msa0182610:intron 30.0%
TATATATAAGAAGAGGCTGA+AGG + chr1_4:71260075-71260094 Msa0182610:intron 30.0%
!!! TCTTGTTATTTTGATAGAGC+TGG + chr1_4:71260105-71260124 Msa0182610:intron 30.0%
!!! CTTGTTATTTTGATAGAGCT+GGG + chr1_4:71260106-71260125 Msa0182610:intron 30.0%
!! GAGCAATTCTATTTCTAAGT+TGG - chr1_4:71260164-71260183 None:intergenic 30.0%
! TTTTCCTTCACAAAGCTTAT+AGG - chr1_4:71260242-71260261 None:intergenic 30.0%
TCAAACATGCATAAACTTCT+AGG + chr1_4:71260308-71260327 Msa0182610:intron 30.0%
CAAACATGCATAAACTTCTA+GGG + chr1_4:71260309-71260328 Msa0182610:intron 30.0%
! TCTAGCATCATGAATTTTGT+TGG + chr1_4:71260744-71260763 Msa0182610:intron 30.0%
AGAAGAGCTCTTTCAAATAA+TGG - chr1_4:71260855-71260874 None:intergenic 30.0%
ATTATTTGAAAGAGCTCTTC+TGG + chr1_4:71260854-71260873 Msa0182610:intron 30.0%
CCTGTATAAGTTGTTTGAAA+TGG - chr1_4:71260923-71260942 None:intergenic 30.0%
CCATTTCAAACAACTTATAC+AGG + chr1_4:71260920-71260939 Msa0182610:intron 30.0%
!! AATAATAGTTTGTTGTGCTC+TGG + chr1_4:71261069-71261088 Msa0182610:intron 30.0%
AAGAAGTTGACAATAAAAGC+TGG + chr1_4:71261122-71261141 Msa0182610:CDS 30.0%
TGTCATCATCATCAACAAAT+TGG + chr1_4:71261333-71261352 Msa0182610:three_prime_UTR 30.0%
GAGAAAACTTCAATACAGAA+AGG - chr1_4:71261416-71261435 None:intergenic 30.0%
! TTCTGTATTGAAGTTTTCTC+TGG + chr1_4:71261416-71261435 Msa0182610:three_prime_UTR 30.0%
ATTAAACACACTACTACCAA+AGG - chr1_4:71261639-71261658 None:intergenic 30.0%
!!! CCTTTTTTGATAAAGACACA+AGG - chr1_4:71261686-71261705 None:intergenic 30.0%
CCTTGTGTCTTTATCAAAAA+AGG + chr1_4:71261683-71261702 Msa0182610:three_prime_UTR 30.0%
TATGTAGTGTTTCTTGTACA+AGG + chr1_4:71261725-71261744 Msa0182610:three_prime_UTR 30.0%
CATCATTGAACAGTGAAATA+AGG - chr1_4:71261778-71261797 None:intergenic 30.0%
CTCTGTCAAAATGGAACAAA+CGG - chr1_4:71256012-71256031 None:intergenic 35.0%
CCCTGCAAATACAAATACAA+TGG - chr1_4:71256329-71256348 None:intergenic 35.0%
!! TAGATATGGTTTTGCTACCA+AGG - chr1_4:71256363-71256382 None:intergenic 35.0%
AAGAAAGAGAGCAAAGAGAA+AGG + chr1_4:71256514-71256533 Msa0182610:CDS 35.0%
AGAAAGAGAGCAAAGAGAAA+GGG + chr1_4:71256515-71256534 Msa0182610:CDS 35.0%
ATCTCTTCTTACACAACACT+TGG + chr1_4:71256689-71256708 Msa0182610:intron 35.0%
TCTCTTCTTACACAACACTT+GGG + chr1_4:71256690-71256709 Msa0182610:intron 35.0%
AAAAAAGGGCAACCTATTAG+CGG - chr1_4:71257021-71257040 None:intergenic 35.0%
! TGTGAAGCATTATGATGCTA+CGG - chr1_4:71257065-71257084 None:intergenic 35.0%
TAGCATCATAATGCTTCACA+TGG + chr1_4:71257065-71257084 Msa0182610:intron 35.0%
TGCTTCACATGGAGTTTAAA+TGG + chr1_4:71257076-71257095 Msa0182610:intron 35.0%
CTACTTGTAGCATCATTAGT+AGG + chr1_4:71257162-71257181 Msa0182610:intron 35.0%
TACATAATCAATCTGCAACC+AGG - chr1_4:71257223-71257242 None:intergenic 35.0%
TCATGAAGTATGCCTATTAC+AGG + chr1_4:71257275-71257294 Msa0182610:intron 35.0%
GAACTGAGGAAGAGAAATTT+AGG - chr1_4:71257441-71257460 None:intergenic 35.0%
GTCAAGCATAATAAGAACTG+AGG - chr1_4:71257455-71257474 None:intergenic 35.0%
GAAGGATATAGAAGAAGAAG+GGG - chr1_4:71257502-71257521 None:intergenic 35.0%
GGAAGGATATAGAAGAAGAA+GGG - chr1_4:71257503-71257522 None:intergenic 35.0%
TGGAAGGATATAGAAGAAGA+AGG - chr1_4:71257504-71257523 None:intergenic 35.0%
GTATATGCATAAATCTCGCT+TGG + chr1_4:71257603-71257622 Msa0182610:intron 35.0%
ACTTAATAAGGTATGCATGC+TGG + chr1_4:71257669-71257688 Msa0182610:intron 35.0%
GAAATATGTCCACATCAATC+TGG + chr1_4:71257698-71257717 Msa0182610:CDS 35.0%
AAGATGCTGGATTTCAAGAA+GGG + chr1_4:71257730-71257749 Msa0182610:CDS 35.0%
! TGAAGGTACACATTACTTGT+TGG + chr1_4:71257826-71257845 Msa0182610:intron 35.0%
! ATTGTTTTCACGATGTCTAG+AGG + chr1_4:71257905-71257924 Msa0182610:intron 35.0%
! TTCTTGATATATGGGGTACT+AGG - chr1_4:71257977-71257996 None:intergenic 35.0%
GGAGTCTTTCTTGATATATG+GGG - chr1_4:71257984-71258003 None:intergenic 35.0%
GAGGAGTCTTTCTTGATATA+TGG - chr1_4:71257986-71258005 None:intergenic 35.0%
! TGCCTTTAATCGGAGAATTT+TGG + chr1_4:71258063-71258082 Msa0182610:intron 35.0%
!! GTTCAAACGCAATATTTTGG+TGG + chr1_4:71258128-71258147 Msa0182610:intron 35.0%
! ATAATCGAGTCCGTTTTGTA+AGG + chr1_4:71258276-71258295 Msa0182610:intron 35.0%
!!! TGTCATTTTAGTATAGTCGG+GGG + chr1_4:71258464-71258483 Msa0182610:intron 35.0%
GGAAAACTACAGAACTTCAA+AGG - chr1_4:71258522-71258541 None:intergenic 35.0%
! GTTCTGTAGTTTTCCATACA+AGG + chr1_4:71258527-71258546 Msa0182610:intron 35.0%
ATCATTGAAGATTATGTGGC+GGG + chr1_4:71258632-71258651 Msa0182610:intron 35.0%
GTGAGGAAGTAATTTCAGTT+GGG + chr1_4:71258690-71258709 Msa0182610:intron 35.0%
TGAGGAAGTAATTTCAGTTG+GGG + chr1_4:71258691-71258710 Msa0182610:intron 35.0%
TGTGTTGGATCAACAAGTTT+GGG + chr1_4:71258724-71258743 Msa0182610:intron 35.0%
CAAGGATCAATTTGACATAC+AGG + chr1_4:71258957-71258976 Msa0182610:intron 35.0%
ATCAATTTGACATACAGGTC+AGG + chr1_4:71258962-71258981 Msa0182610:intron 35.0%
! AAGGGTTTTTCTTGAAAGGA+CGG + chr1_4:71259017-71259036 Msa0182610:intron 35.0%
ACTATTGGAGGAGATGAATT+TGG + chr1_4:71259068-71259087 Msa0182610:intron 35.0%
AAACGAGTGAAGAAAAGAGT+CGG + chr1_4:71259101-71259120 Msa0182610:intron 35.0%
GAAATGGAGTGAAATGACTA+TGG + chr1_4:71259191-71259210 Msa0182610:intron 35.0%
! CTTTTCATTCCACTTCTGTT+AGG - chr1_4:71259311-71259330 None:intergenic 35.0%
CTAACAGAAGTGGAATGAAA+AGG + chr1_4:71259309-71259328 Msa0182610:intron 35.0%
AAAATCATTGTTGAATGCGG+AGG + chr1_4:71259367-71259386 Msa0182610:intron 35.0%
!! TTTGTACAAGAGCACACTTT+TGG - chr1_4:71259396-71259415 None:intergenic 35.0%
! AAAAGTGTGCTCTTGTACAA+AGG + chr1_4:71259395-71259414 Msa0182610:intron 35.0%
! ATCTGACAACTTCAACCTTT+TGG + chr1_4:71259549-71259568 Msa0182610:intron 35.0%
TTCATGTTTAGCAACAGCAT+AGG - chr1_4:71259626-71259645 None:intergenic 35.0%
ATTGATGAGAGGCAGATTAA+TGG + chr1_4:71259696-71259715 Msa0182610:intron 35.0%
TTGATACACCTGTTAGTTGA+AGG + chr1_4:71259990-71260009 Msa0182610:intron 35.0%
TGAGTTAAGCTTGTAGTTTG+TGG + chr1_4:71260017-71260036 Msa0182610:intron 35.0%
! GAGTTAAGCTTGTAGTTTGT+GGG + chr1_4:71260018-71260037 Msa0182610:intron 35.0%
!! TTTCTAAGTTGGTTGGAAGA+GGG - chr1_4:71260153-71260172 None:intergenic 35.0%
!! ATTTCTAAGTTGGTTGGAAG+AGG - chr1_4:71260154-71260173 None:intergenic 35.0%
GTGAAGGAAAATAACATGCT+CGG + chr1_4:71260251-71260270 Msa0182610:intron 35.0%
GCATTCTTTACCTTACAAAC+TGG - chr1_4:71260451-71260470 None:intergenic 35.0%
AAAGAAACTGTAGCATGTTC+TGG + chr1_4:71260704-71260723 Msa0182610:intron 35.0%
ACATATAATACGCTACCAAG+TGG + chr1_4:71260796-71260815 Msa0182610:intron 35.0%
CATATAATACGCTACCAAGT+GGG + chr1_4:71260797-71260816 Msa0182610:intron 35.0%
ATGGCTTAACCCATTTCTTA+CGG - chr1_4:71261214-71261233 None:intergenic 35.0%
!! CATTTTGACAGAGTGAAGAG+CGG + chr1_4:71256019-71256038 Msa0182610:five_prime_UTR 40.0%
CTTCTCTTATTCCTGTTTCC+TGG + chr1_4:71256078-71256097 Msa0182610:CDS 40.0%
TAATAAGGCTGCTTCTGCTT+CGG + chr1_4:71256430-71256449 Msa0182610:intron 40.0%
AACCAGCAGGTGAAAATGTT+CGG + chr1_4:71256456-71256475 Msa0182610:intron 40.0%
CAGGTGAAAATGTTCGGTTT+CGG + chr1_4:71256462-71256481 Msa0182610:intron 40.0%
TGAAAATGTTCGGTTTCGGT+TGG + chr1_4:71256466-71256485 Msa0182610:CDS 40.0%
TTTGCTCTCTTTCTTGAACC+TGG - chr1_4:71256509-71256528 None:intergenic 40.0%
!!! AGTTGTGGTTTTGGAATGAG+AGG + chr1_4:71256566-71256585 Msa0182610:CDS 40.0%
AGAGGTCAAAAATCTCGATC+TGG + chr1_4:71256584-71256603 Msa0182610:CDS 40.0%
TCAAAACCTCTCATGATACC+AGG - chr1_4:71256611-71256630 None:intergenic 40.0%
!! GGTATCATGAGAGGTTTTGA+AGG + chr1_4:71256611-71256630 Msa0182610:CDS 40.0%
!!! ATCATGAGAGGTTTTGAAGG+TGG + chr1_4:71256614-71256633 Msa0182610:CDS 40.0%
CCTGCAATTCCTCTAAGTTT+GGG - chr1_4:71256665-71256684 None:intergenic 40.0%
TCCTGCAATTCCTCTAAGTT+TGG - chr1_4:71256666-71256685 None:intergenic 40.0%
AAACTTAGAGGAATTGCAGG+AGG + chr1_4:71256665-71256684 Msa0182610:CDS 40.0%
AAAAAGGGCAACCTATTAGC+GGG - chr1_4:71257020-71257039 None:intergenic 40.0%
TGAGAATTGTGAGTGATTCC+TGG + chr1_4:71257202-71257221 Msa0182610:intron 40.0%
CTATGTCTACCAGATTGATG+TGG - chr1_4:71257710-71257729 None:intergenic 40.0%
GAAGATGCTGGATTTCAAGA+AGG + chr1_4:71257729-71257748 Msa0182610:CDS 40.0%
AGATGCTGGATTTCAAGAAG+GGG + chr1_4:71257731-71257750 Msa0182610:CDS 40.0%
AAACGTGTGATTAACCCATC+AGG + chr1_4:71257783-71257802 Msa0182610:CDS 40.0%
TGTGATTAACCCATCAGGAA+GGG + chr1_4:71257788-71257807 Msa0182610:CDS 40.0%
GGAACGGAAACTTCTATTGA+AGG + chr1_4:71257809-71257828 Msa0182610:CDS 40.0%
CAAGAAAGACTCCTCATATG+AGG + chr1_4:71257991-71258010 Msa0182610:intron 40.0%
TTGGAATATAAGAGGTCCGT+TGG + chr1_4:71258184-71258203 Msa0182610:intron 40.0%
GATTATGCGGTTGAGAAACA+CGG - chr1_4:71258262-71258281 None:intergenic 40.0%
! ACAAAACGGACTCGATTATG+CGG - chr1_4:71258275-71258294 None:intergenic 40.0%
AAGAGGGCTTAGATTTGAGA+GGG + chr1_4:71258431-71258450 Msa0182610:intron 40.0%
! TGTGGCGGGAATAAGAATAA+AGG + chr1_4:71258646-71258665 Msa0182610:intron 40.0%
GGTGAGGAAGTAATTTCAGT+TGG + chr1_4:71258689-71258708 Msa0182610:intron 40.0%
CTGTGTTGGATCAACAAGTT+TGG + chr1_4:71258723-71258742 Msa0182610:intron 40.0%
!! CATATGAAATAGGTGTTGGG+AGG + chr1_4:71258756-71258775 Msa0182610:intron 40.0%
ATAAGTCATCTGTGTAGCCA+TGG + chr1_4:71258788-71258807 Msa0182610:intron 40.0%
TTATGACACATCACCCAAGT+CGG - chr1_4:71258851-71258870 None:intergenic 40.0%
!! AATGGGTTACGAATCATGGA+TGG - chr1_4:71258893-71258912 None:intergenic 40.0%
TCCATGATTCGTAACCCATT+TGG + chr1_4:71258893-71258912 Msa0182610:intron 40.0%
!! ACCAAATGGGTTACGAATCA+TGG - chr1_4:71258897-71258916 None:intergenic 40.0%
TTTGTTGGGTATGAAGCAAG+AGG + chr1_4:71258919-71258938 Msa0182610:intron 40.0%
TTGTTGGGTATGAAGCAAGA+GGG + chr1_4:71258920-71258939 Msa0182610:intron 40.0%
AAATGACTATGGCATGGAAG+TGG + chr1_4:71259202-71259221 Msa0182610:intron 40.0%
! TTTTTATTCTCCTCTGCCCT+AGG - chr1_4:71259239-71259258 None:intergenic 40.0%
GGAAAAGATGTCTTTATGGG+TGG + chr1_4:71259330-71259349 Msa0182610:intron 40.0%
CATTAGGTCTTCATGCATGT+AGG - chr1_4:71259453-71259472 None:intergenic 40.0%
ATACGAGATTCGTTGTTCGA+TGG - chr1_4:71259480-71259499 None:intergenic 40.0%
AGTAGCCAAGGTGATATCAA+AGG + chr1_4:71259500-71259519 Msa0182610:intron 40.0%
CTTTGCCTTTGATATCACCT+TGG - chr1_4:71259508-71259527 None:intergenic 40.0%
! TGACAACTTCAACCTTTTGG+TGG + chr1_4:71259552-71259571 Msa0182610:intron 40.0%
TGAGCTTGAAGATGAAGTTG+TGG + chr1_4:71259578-71259597 Msa0182610:intron 40.0%
GAGCTTGAAGATGAAGTTGT+GGG + chr1_4:71259579-71259598 Msa0182610:intron 40.0%
AGCTTGAAGATGAAGTTGTG+GGG + chr1_4:71259580-71259599 Msa0182610:intron 40.0%
GCTGTTGCTAAACATGAAGA+TGG + chr1_4:71259628-71259647 Msa0182610:intron 40.0%
AGAGCAACACAAAGTTTGAG+AGG + chr1_4:71259777-71259796 Msa0182610:intron 40.0%
AAAGAGTTCTTTGGCATGAC+TGG + chr1_4:71259815-71259834 Msa0182610:intron 40.0%
AAGAGTTCTTTGGCATGACT+GGG + chr1_4:71259816-71259835 Msa0182610:intron 40.0%
AGGATAAGGTGAAACTTGAG+AGG + chr1_4:71259961-71259980 Msa0182610:intron 40.0%
CTCAAACTCCTTCAACTAAC+AGG - chr1_4:71260001-71260020 None:intergenic 40.0%
GTTTCGGCAAAAAACCTTAC+CGG + chr1_4:71260206-71260225 Msa0182610:intron 40.0%
CAAAAAACCTTACCGGAAGA+TGG + chr1_4:71260213-71260232 Msa0182610:intron 40.0%
! GCTTCCTATAAGCTTTGTGA+AGG + chr1_4:71260235-71260254 Msa0182610:intron 40.0%
GAAAATAACATGCTCGGCAA+CGG + chr1_4:71260257-71260276 Msa0182610:intron 40.0%
!! GTTCTGGATCCAGGTTTTTA+GGG - chr1_4:71260355-71260374 None:intergenic 40.0%
!! ACCTTACAAACTGGTCTTGT+CGG - chr1_4:71260442-71260461 None:intergenic 40.0%
AAGAATGCCCAAGCTCTATT+TGG + chr1_4:71260463-71260482 Msa0182610:intron 40.0%
AGAATGCCCAAGCTCTATTT+GGG + chr1_4:71260464-71260483 Msa0182610:intron 40.0%
! AGGACTGAATATTTGGAGTG+AGG - chr1_4:71260504-71260523 None:intergenic 40.0%
CACACTCAGGACTGAATATT+TGG - chr1_4:71260511-71260530 None:intergenic 40.0%
! TCTGGTTTCCTCATAAACTC+AGG + chr1_4:71260872-71260891 Msa0182610:intron 40.0%
AAGTTTCTCCTTTGCTGATG+TGG - chr1_4:71261156-71261175 None:intergenic 40.0%
!!! GCAAGATTTTTGGCAACTGA+TGG - chr1_4:71261233-71261252 None:intergenic 40.0%
GTAGTGTTTCTTGTACAAGG+TGG + chr1_4:71261728-71261747 Msa0182610:three_prime_UTR 40.0%
GATACCGAAAGTTCTTGGTT+CGG + chr1_4:71261750-71261769 Msa0182610:three_prime_UTR 40.0%
CGCTCTTCACTCTGTCAAAA+TGG - chr1_4:71256021-71256040 None:intergenic 45.0%
TTGAATGGAGAAGCGAGAGA+GGG - chr1_4:71256107-71256126 None:intergenic 45.0%
! AACCGAACATTTTCACCTGC+TGG - chr1_4:71256461-71256480 None:intergenic 45.0%
TCGGTTTCGGTTGGACAATT+TGG + chr1_4:71256475-71256494 Msa0182610:CDS 45.0%
CGGTTTCGGTTGGACAATTT+GGG + chr1_4:71256476-71256495 Msa0182610:CDS 45.0%
CTCTTTCTTGAACCTGGTTG+TGG - chr1_4:71256503-71256522 None:intergenic 45.0%
AGAGCAAAGAGAAAGGGAAG+AGG + chr1_4:71256521-71256540 Msa0182610:CDS 45.0%
CAAAAATCTCGATCTGGACC+TGG + chr1_4:71256590-71256609 Msa0182610:CDS 45.0%
TTGGGCAATCGTCGATAAAG+TGG - chr1_4:71256647-71256666 None:intergenic 45.0%
CCCAAACTTAGAGGAATTGC+AGG + chr1_4:71256662-71256681 Msa0182610:CDS 45.0%
ATTGCGCAAAAGCTCCCATT+TGG - chr1_4:71256915-71256934 None:intergenic 45.0%
CTTGATCACTCCCTAACAGT+AGG - chr1_4:71257135-71257154 None:intergenic 45.0%
AGTATGCCTATTACAGGAGC+AGG + chr1_4:71257281-71257300 Msa0182610:intron 45.0%
GCATATCCTGCTCCTGTAAT+AGG - chr1_4:71257290-71257309 None:intergenic 45.0%
CTGGTAGACATAGAAGATGC+TGG + chr1_4:71257717-71257736 Msa0182610:CDS 45.0%
TGGATTTCAAGAAGGGGAAG+AGG + chr1_4:71257737-71257756 Msa0182610:CDS 45.0%
GTGTGATTAACCCATCAGGA+AGG + chr1_4:71257787-71257806 Msa0182610:CDS 45.0%
TTAACCCATCAGGAAGGGAA+CGG + chr1_4:71257793-71257812 Msa0182610:CDS 45.0%
TAGACAAGGGACCTCATATG+AGG - chr1_4:71258005-71258024 None:intergenic 45.0%
GAAGAGGGCTTAGATTTGAG+AGG + chr1_4:71258430-71258449 Msa0182610:intron 45.0%
CTTCTCTACTCCCTATACCA+AGG - chr1_4:71258491-71258510 None:intergenic 45.0%
TTGGTATCAAGGCTCCATCA+AGG + chr1_4:71258597-71258616 Msa0182610:intron 45.0%
ATATACCCCCAACTCCTTGA+TGG - chr1_4:71258614-71258633 None:intergenic 45.0%
! AAAGGCACACATGGATGTCA+TGG + chr1_4:71258664-71258683 Msa0182610:intron 45.0%
GTTGGATCAACAAGTTTGGG+AGG + chr1_4:71258727-71258746 Msa0182610:intron 45.0%
AAACAAAGCTCGTCCTTCCA+TGG - chr1_4:71258808-71258827 None:intergenic 45.0%
AATGCTCCAAAACCCGACTT+GGG + chr1_4:71258835-71258854 Msa0182610:intron 45.0%
TATGACACATCACCCAAGTC+GGG - chr1_4:71258850-71258869 None:intergenic 45.0%
AGATTGAAGCTACCCTTGGA+CGG + chr1_4:71259042-71259061 Msa0182610:intron 45.0%
GAGTGAAGAAAAGAGTCGGT+CGG + chr1_4:71259105-71259124 Msa0182610:intron 45.0%
AAGAAAAGAGTCGGTCGGTT+TGG + chr1_4:71259110-71259129 Msa0182610:intron 45.0%
GGAGTGAAATGACTATGGCA+TGG + chr1_4:71259196-71259215 Msa0182610:intron 45.0%
! GCATGGAAGTGGAAGTTGAT+CGG + chr1_4:71259213-71259232 Msa0182610:intron 45.0%
ACTTCTGTTAGGTTACCAGG+TGG - chr1_4:71259300-71259319 None:intergenic 45.0%
ACCTGGTAACCTAACAGAAG+TGG + chr1_4:71259299-71259318 Msa0182610:intron 45.0%
TCCACTTCTGTTAGGTTACC+AGG - chr1_4:71259303-71259322 None:intergenic 45.0%
!! GTACAAGAGCACACTTTTGG+TGG - chr1_4:71259393-71259412 None:intergenic 45.0%
GTGTGCTCTTGTACAAAGGA+TGG + chr1_4:71259399-71259418 Msa0182610:intron 45.0%
!! GTTGTTCGATGGTGGACATT+AGG - chr1_4:71259469-71259488 None:intergenic 45.0%
CGAATCTCGTATAGTAGCCA+AGG + chr1_4:71259488-71259507 Msa0182610:intron 45.0%
TCAAGCTCAATGCCACCAAA+AGG - chr1_4:71259567-71259586 None:intergenic 45.0%
GCAACACAAAGTTTGAGAGG+CGG + chr1_4:71259780-71259799 Msa0182610:intron 45.0%
CAACACAAAGTTTGAGAGGC+GGG + chr1_4:71259781-71259800 Msa0182610:intron 45.0%
ACTGGGAGTCAAACTGTCAA+AGG + chr1_4:71259833-71259852 Msa0182610:intron 45.0%
CTGGGAGTCAAACTGTCAAA+GGG + chr1_4:71259834-71259853 Msa0182610:intron 45.0%
GTCTTGCTGCAGCTAGAATA+AGG - chr1_4:71259911-71259930 None:intergenic 45.0%
! TAGCTGCAGCAAGACTGTTT+TGG + chr1_4:71259916-71259935 Msa0182610:intron 45.0%
CCTCCTGTATGGTTCAGTTT+CGG + chr1_4:71260190-71260209 Msa0182610:intron 45.0%
TTGCCGAAACTGAACCATAC+AGG - chr1_4:71260196-71260215 None:intergenic 45.0%
GCTTATAGGAAGCCATCTTC+CGG - chr1_4:71260228-71260247 None:intergenic 45.0%
!!! TGGATCCAGGTTTTTAGGGT+TGG - chr1_4:71260351-71260370 None:intergenic 45.0%
!!! GGTTCTGGATCCAGGTTTTT+AGG - chr1_4:71260356-71260375 None:intergenic 45.0%
AAATACGCTGTTACCAGAGC+AGG - chr1_4:71260377-71260396 None:intergenic 45.0%
ACCGACAAGACCAGTTTGTA+AGG + chr1_4:71260438-71260457 Msa0182610:intron 45.0%
AGGCTTCCCAAATAGAGCTT+GGG - chr1_4:71260473-71260492 None:intergenic 45.0%
AAGGCTTCCCAAATAGAGCT+TGG - chr1_4:71260474-71260493 None:intergenic 45.0%
! TTTGGAGTGAGGACAAACGA+AGG - chr1_4:71260493-71260512 None:intergenic 45.0%
TATTCAGTCCTGAGTGTGTG+AGG + chr1_4:71260513-71260532 Msa0182610:intron 45.0%
ATTCAGTCCTGAGTGTGTGA+GGG + chr1_4:71260514-71260533 Msa0182610:intron 45.0%
ATACGCTACCAAGTGGGAAA+AGG + chr1_4:71260803-71260822 Msa0182610:intron 45.0%
! TTCCACGCTTTTCGTCACAA+TGG + chr1_4:71261002-71261021 Msa0182610:intron 45.0%
ATCCATTGTGACGAAAAGCG+TGG - chr1_4:71261007-71261026 None:intergenic 45.0%
!! GTTTGTTGTGCTCTGGTTTC+AGG + chr1_4:71261076-71261095 Msa0182610:intron 45.0%
!!! TGTGCTCTGGTTTCAGGTTT+TGG + chr1_4:71261082-71261101 Msa0182610:intron 45.0%
!!! GTGCTCTGGTTTCAGGTTTT+GGG + chr1_4:71261083-71261102 Msa0182610:intron 45.0%
!!! TGGTTTCAGGTTTTGGGTGA+AGG + chr1_4:71261089-71261108 Msa0182610:intron 45.0%
! TGCCTTTTCCACATCAGCAA+AGG + chr1_4:71261145-71261164 Msa0182610:CDS 45.0%
CTCCTTTGCTGATGTGGAAA+AGG - chr1_4:71261150-71261169 None:intergenic 45.0%
AAGGAGAAACTTGAGTCTGC+TGG + chr1_4:71261164-71261183 Msa0182610:CDS 45.0%
TGTTCCATCACTGTGATTCC+TGG + chr1_4:71261188-71261207 Msa0182610:CDS 45.0%
TGATTCCTGGCCGTAAGAAA+TGG + chr1_4:71261201-71261220 Msa0182610:CDS 45.0%
GATTCCTGGCCGTAAGAAAT+GGG + chr1_4:71261202-71261221 Msa0182610:CDS 45.0%
TTAACCCATTTCTTACGGCC+AGG - chr1_4:71261209-71261228 None:intergenic 45.0%
! CTTCTTGGCGAAGTATTCGT+CGG - chr1_4:71261261-71261280 None:intergenic 45.0%
!! GTTTGCTTGTCGATTTGTGC+TGG + chr1_4:71261610-71261629 Msa0182610:three_prime_UTR 45.0%
CGATTTGTGCTGGAAACCTT+TGG + chr1_4:71261620-71261639 Msa0182610:three_prime_UTR 45.0%
AGGTGGATACCGAAAGTTCT+TGG + chr1_4:71261745-71261764 Msa0182610:three_prime_UTR 45.0%
!!! TTTTATAAAAATAAAAGAAA+AGG - chr1_4:71257646-71257665 None:intergenic 5.0%
!! TTTATAAAAAAAACTTAATA+AGG + chr1_4:71257657-71257676 Msa0182610:intron 5.0%
AGAGAGGGTAACCAGGAAAC+AGG - chr1_4:71256092-71256111 None:intergenic 50.0%
CTTGAATGGAGAAGCGAGAG+AGG - chr1_4:71256108-71256127 None:intergenic 50.0%
CTCTCTCGCTTCTCCATTCA+AGG + chr1_4:71256106-71256125 Msa0182610:CDS 50.0%
GCAGGGAAACGTGAAAACCT+TGG + chr1_4:71256343-71256362 Msa0182610:intron 50.0%
GACAATTTGGGTCCACAACC+AGG + chr1_4:71256488-71256507 Msa0182610:CDS 50.0%
! CAAGGAGCGAGTTGTGGTTT+TGG + chr1_4:71256557-71256576 Msa0182610:CDS 50.0%
TCTGGACCTGGTATCATGAG+AGG + chr1_4:71256602-71256621 Msa0182610:CDS 50.0%
CGACGATTGCCCAAACTTAG+AGG + chr1_4:71256653-71256672 Msa0182610:CDS 50.0%
GTTTCCGTTCCCTTCCTGAT+GGG - chr1_4:71257800-71257819 None:intergenic 50.0%
AGTTTCCGTTCCCTTCCTGA+TGG - chr1_4:71257801-71257820 None:intergenic 50.0%
TTAGTATAGTCGGGGGTCCT+TGG + chr1_4:71258471-71258490 Msa0182610:intron 50.0%
TCAAGGCTCCATCAAGGAGT+TGG + chr1_4:71258603-71258622 Msa0182610:intron 50.0%
CAAGGCTCCATCAAGGAGTT+GGG + chr1_4:71258604-71258623 Msa0182610:intron 50.0%
AAGGCTCCATCAAGGAGTTG+GGG + chr1_4:71258605-71258624 Msa0182610:intron 50.0%
GCACACATGGATGTCATGGA+TGG + chr1_4:71258668-71258687 Msa0182610:intron 50.0%
CATGGATGTCATGGATGGTG+AGG + chr1_4:71258673-71258692 Msa0182610:intron 50.0%
TGGGGAAGATGCATCTGTGT+TGG + chr1_4:71258709-71258728 Msa0182610:intron 50.0%
GTCATCTGTGTAGCCATGGA+AGG + chr1_4:71258792-71258811 Msa0182610:intron 50.0%
CAATGCTCCAAAACCCGACT+TGG + chr1_4:71258834-71258853 Msa0182610:intron 50.0%
! ACATCACCCAAGTCGGGTTT+TGG - chr1_4:71258844-71258863 None:intergenic 50.0%
GGTTACGAATCATGGATGGC+TGG - chr1_4:71258889-71258908 None:intergenic 50.0%
AGGGCTTGTGCATGAATGCA+AGG + chr1_4:71258939-71258958 Msa0182610:intron 50.0%
GGCAAGATTGAAGCTACCCT+TGG + chr1_4:71259038-71259057 Msa0182610:intron 50.0%
GATTGAAGCTACCCTTGGAC+GGG + chr1_4:71259043-71259062 Msa0182610:intron 50.0%
TCCAATAGTGACCCGTCCAA+GGG - chr1_4:71259057-71259076 None:intergenic 50.0%
! AAGTGGAAGTTGATCGGCCT+AGG + chr1_4:71259219-71259238 Msa0182610:intron 50.0%
! AGTGGAAGTTGATCGGCCTA+GGG + chr1_4:71259220-71259239 Msa0182610:intron 50.0%
ATTACCGAACAGGGGACAGT+AGG + chr1_4:71259261-71259280 Msa0182610:intron 50.0%
CAATCCTACTGTCCCCTGTT+CGG - chr1_4:71259268-71259287 None:intergenic 50.0%
CGAGATTCGTTGTTCGATGG+TGG - chr1_4:71259477-71259496 None:intergenic 50.0%
TTCAAAGAGGCTGACCGCAT+AGG + chr1_4:71259666-71259685 Msa0182610:intron 50.0%
CATCAATGCACGAGCCTATG+CGG - chr1_4:71259683-71259702 None:intergenic 50.0%
! TAGGCTCGTGCATTGATGAG+AGG + chr1_4:71259685-71259704 Msa0182610:intron 50.0%
GCAGGCGTCAAAGAGTTCTT+TGG + chr1_4:71259806-71259825 Msa0182610:intron 50.0%
! GCTTGTAGTTTGTGGGAGCT+AGG + chr1_4:71260025-71260044 Msa0182610:intron 50.0%
GGCCAACTGAAGACTCATCA+GGG - chr1_4:71260132-71260151 None:intergenic 50.0%
TGCTCTTTGAGCCTCCTGTA+TGG + chr1_4:71260179-71260198 Msa0182610:intron 50.0%
CCGAAACTGAACCATACAGG+AGG - chr1_4:71260193-71260212 None:intergenic 50.0%
TAGGAAGCCATCTTCCGGTA+AGG - chr1_4:71260223-71260242 None:intergenic 50.0%
!! TCTAGGGTTAGCCTTGACGA+CGG + chr1_4:71260325-71260344 Msa0182610:intron 50.0%
!! CTGGTCTTGTCGGTTCAGTT+AGG - chr1_4:71260432-71260451 None:intergenic 50.0%
TTCAGTCCTGAGTGTGTGAG+GGG + chr1_4:71260515-71260534 Msa0182610:intron 50.0%
CTACCAAGTGGGAAAAGGCA+TGG + chr1_4:71260808-71260827 Msa0182610:intron 50.0%
! GTCGGCACGTGCAAGATTTT+TGG - chr1_4:71261243-71261262 None:intergenic 50.0%
! GGCACCGAACCAAGAACTTT+CGG - chr1_4:71261757-71261776 None:intergenic 50.0%
AGAAGCGAGAGAGGGTAACC+AGG - chr1_4:71256099-71256118 None:intergenic 55.0%
TCTGCTTCGGTGAAACCAGC+AGG + chr1_4:71256443-71256462 Msa0182610:intron 55.0%
!! AAGGGAAGAGGTATTGCCGC+AGG + chr1_4:71256533-71256552 Msa0182610:CDS 55.0%
!! AGAGGTATTGCCGCAGGACA+AGG + chr1_4:71256539-71256558 Msa0182610:CDS 55.0%
ACAACTCGCTCCTTGTCCTG+CGG - chr1_4:71256552-71256571 None:intergenic 55.0%
!! AGAAGGGGAAGAGGTGTCTC+TGG + chr1_4:71257746-71257765 Msa0182610:CDS 55.0%
! GGTGTCTCTGGAGACACTGA+CGG + chr1_4:71257758-71257777 Msa0182610:CDS 55.0%
TAGTCGGGGGTCCTTGGTAT+AGG + chr1_4:71258477-71258496 Msa0182610:intron 55.0%
AGTCGGGGGTCCTTGGTATA+GGG + chr1_4:71258478-71258497 Msa0182610:intron 55.0%
AGGCTCCATCAAGGAGTTGG+GGG + chr1_4:71258606-71258625 Msa0182610:intron 55.0%
ACCCTTGGACGGGTCACTAT+TGG + chr1_4:71259053-71259072 Msa0182610:intron 55.0%
CTCCAATAGTGACCCGTCCA+AGG - chr1_4:71259058-71259077 None:intergenic 55.0%
CTTGGACGGGTCACTATTGG+AGG + chr1_4:71259056-71259075 Msa0182610:intron 55.0%
CAGGGGACAGTAGGATTGCA+AGG + chr1_4:71259270-71259289 Msa0182610:intron 55.0%
GGATTGCAAGGTCAACCACC+TGG + chr1_4:71259282-71259301 Msa0182610:intron 55.0%
AAGTTTGAGAGGCGGGATGC+AGG + chr1_4:71259788-71259807 Msa0182610:intron 55.0%
GGCCCTGATGAGTCTTCAGT+TGG + chr1_4:71260127-71260146 Msa0182610:intron 55.0%
GGGCCAACTGAAGACTCATC+AGG - chr1_4:71260133-71260152 None:intergenic 55.0%
!! TTTAGGGTTGGCCGTCGTCA+AGG - chr1_4:71260339-71260358 None:intergenic 55.0%
GACGGCCAACCCTAAAAACC+TGG + chr1_4:71260343-71260362 Msa0182610:intron 55.0%
GCTGTTACCAGAGCAGGTTC+TGG - chr1_4:71260371-71260390 None:intergenic 55.0%
! CCACCATGCCTTTTCCCACT+TGG - chr1_4:71260814-71260833 None:intergenic 55.0%
! CCAAGTGGGAAAAGGCATGG+TGG + chr1_4:71260811-71260830 Msa0182610:intron 55.0%
! AGTGGGAAAAGGCATGGTGG+TGG + chr1_4:71260814-71260833 Msa0182610:intron 55.0%
ACGGCCAGGAATCACAGTGA+TGG - chr1_4:71261195-71261214 None:intergenic 55.0%
AGCAGCTGCTTCTCGCTTCT+TGG - chr1_4:71261276-71261295 None:intergenic 55.0%
GCAGGACAAGGAGCGAGTTG+TGG + chr1_4:71256551-71256570 Msa0182610:CDS 60.0%
AGTTGATCGGCCTAGGGCAG+AGG + chr1_4:71259226-71259245 Msa0182610:intron 60.0%
!! CCAGAGCAGGTTCTGGATCC+AGG - chr1_4:71260364-71260383 None:intergenic 60.0%
CCTGGATCCAGAACCTGCTC+TGG + chr1_4:71260361-71260380 Msa0182610:intron 60.0%
AGTCCTGAGTGTGTGAGGGG+AGG + chr1_4:71260518-71260537 Msa0182610:intron 60.0%
ACACCTCCCCTCACACACTC+AGG - chr1_4:71260524-71260543 None:intergenic 60.0%
CATGCTCGGCAACGGCAGTG+CGG + chr1_4:71260265-71260284 Msa0182610:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 71255976 71261818 71255976 ID=Msa0182610;Name=Msa0182610
chr1_4 mRNA 71255976 71261818 71255976 ID=Msa0182610-mRNA-1;Parent=Msa0182610;Name=Msa0182610-mRNA-1;_AED=0.06;_eAED=0.06;_QI=89|0.8|0.66|1|0.4|0.33|6|427|241
chr1_4 exon 71255976 71256127 71255976 ID=Msa0182610-mRNA-1:exon:23877;Parent=Msa0182610-mRNA-1
chr1_4 exon 71256347 71256416 71256347 ID=Msa0182610-mRNA-1:exon:23878;Parent=Msa0182610-mRNA-1
chr1_4 exon 71256465 71256686 71256465 ID=Msa0182610-mRNA-1:exon:23879;Parent=Msa0182610-mRNA-1
chr1_4 exon 71257679 71257830 71257679 ID=Msa0182610-mRNA-1:exon:23880;Parent=Msa0182610-mRNA-1
chr1_4 exon 71261098 71261517 71261098 ID=Msa0182610-mRNA-1:exon:23881;Parent=Msa0182610-mRNA-1
chr1_4 exon 71261593 71261818 71261593 ID=Msa0182610-mRNA-1:exon:23882;Parent=Msa0182610-mRNA-1
chr1_4 five_prime_UTR 71255976 71256064 71255976 ID=Msa0182610-mRNA-1:five_prime_utr;Parent=Msa0182610-mRNA-1
chr1_4 CDS 71256065 71256127 71256065 ID=Msa0182610-mRNA-1:cds;Parent=Msa0182610-mRNA-1
chr1_4 CDS 71256347 71256416 71256347 ID=Msa0182610-mRNA-1:cds;Parent=Msa0182610-mRNA-1
chr1_4 CDS 71256465 71256686 71256465 ID=Msa0182610-mRNA-1:cds;Parent=Msa0182610-mRNA-1
chr1_4 CDS 71257679 71257830 71257679 ID=Msa0182610-mRNA-1:cds;Parent=Msa0182610-mRNA-1
chr1_4 CDS 71261098 71261316 71261098 ID=Msa0182610-mRNA-1:cds;Parent=Msa0182610-mRNA-1
chr1_4 three_prime_UTR 71261317 71261517 71261317 ID=Msa0182610-mRNA-1:three_prime_utr;Parent=Msa0182610-mRNA-1
chr1_4 three_prime_UTR 71261593 71261818 71261593 ID=Msa0182610-mRNA-1:three_prime_utr;Parent=Msa0182610-mRNA-1
Gene Sequence

>Msa0182610

ATGAGTGCTGCTGCTTCTCTTATTCCTGTTTCCTGGTTACCCTCTCTCGCTTCTCCATTCAAGGGAAACGTGAAAACCTTGGTAGCAAAACCATATCTATGTCCATGTCTTAAAATTCAGCGAATGAAACCTCGTGAAAATGTTCGGTTTCGGTTGGACAATTTGGGTCCACAACCAGGTTCAAGAAAGAGAGCAAAGAGAAAGGGAAGAGGTATTGCCGCAGGACAAGGAGCGAGTTGTGGTTTTGGAATGAGAGGTCAAAAATCTCGATCTGGACCTGGTATCATGAGAGGTTTTGAAGGTGGTCAGATGCCACTTTATCGACGATTGCCCAAACTTAGAGGAATTGCAGGAGGTATGCATGCTGGATTGCCGAAATATGTCCACATCAATCTGGTAGACATAGAAGATGCTGGATTTCAAGAAGGGGAAGAGGTGTCTCTGGAGACACTGACGGAGAAACGTGTGATTAACCCATCAGGAAGGGAACGGAAACTTCTATTGAAGGTTTTGGGTGAAGGAGAACTAAGCAAGAAGTTGACAATAAAAGCTGGTGCCTTTTCCACATCAGCAAAGGAGAAACTTGAGTCTGCTGGTTGTTCCATCACTGTGATTCCTGGCCGTAAGAAATGGGTTAAGCCATCAGTTGCCAAAAATCTTGCACGTGCCGACGAATACTTCGCCAAGAAGCGAGAAGCAGCTGCTTCTGAACCAGATTCTGTTTAA

Protein sequence

>Msa0182610

MSAAASLIPVSWLPSLASPFKGNVKTLVAKPYLCPCLKIQRMKPRENVRFRLDNLGPQPGSRKRAKRKGRGIAAGQGASCGFGMRGQKSRSGPGIMRGFEGGQMPLYRRLPKLRGIAGGMHAGLPKYVHINLVDIEDAGFQEGEEVSLETLTEKRVINPSGRERKLLLKVLGEGELSKKLTIKAGAFSTSAKEKLESAGCSITVIPGRKKWVKPSVAKNLARADEYFAKKREAAASEPDSV*