AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0575670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0575670 MtrunA17_Chr8g0392891 98.047 256 5 0 1 256 1 256 0.0 509
Msa0575670 MtrunA17_Chr1g0179231 36.000 100 52 4 134 225 74 169 5.45e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0575670 AT1G18170.1 70.430 186 51 2 75 256 62 247 1.19e-95 281
Msa0575670 AT1G73655.1 50.000 252 100 4 1 251 1 227 1.55e-79 239
Msa0575670 AT3G10060.1 29.379 177 101 5 87 255 60 220 7.14e-13 66.6

Find 86 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGAGAATGGTGCTGATTT+AGG 0.153499 4_1:+79576803 Msa0575670:CDS
GATGAAACAACTGGTTTAAT+AGG 0.212922 4_1:-79576147 None:intergenic
CTAAACATGGCTACTATCTT+TGG 0.265803 4_1:+79575949 Msa0575670:exon
TAATGATAATAAGTTTGATT+TGG 0.285903 4_1:-79575921 None:intergenic
GAGAGAATGGTGCTGATTTA+GGG 0.288158 4_1:+79576804 Msa0575670:CDS
AGTTATTGTGCCTCCTGAAT+TGG 0.295641 4_1:+79576775 Msa0575670:CDS
TTTGGTTGTGATTGATATAA+TGG 0.298752 4_1:+79576598 Msa0575670:CDS
ATACATGTCAGTGTAAAATA+TGG 0.344077 4_1:+79577027 Msa0575670:three_prime_UTR
TTGACCAGACGGTTTGGCCT+TGG 0.354356 4_1:+79576207 Msa0575670:CDS
CAAAGATAGTAGCCATGTTT+AGG 0.366908 4_1:-79575948 None:intergenic
TTCTCTCTAAATCCCAATTC+AGG 0.369157 4_1:-79576788 None:intergenic
GAAACCATTGGCTCTAGTTA+TGG 0.370613 4_1:+79576673 Msa0575670:CDS
AAACCATTGGCTCTAGTTAT+GGG 0.372920 4_1:+79576674 Msa0575670:CDS
ATAATTAACCTTATGCCATT+AGG 0.374600 4_1:-79576457 None:intergenic
TCACACACACCCTTACTATA+TGG 0.378280 4_1:-79576704 None:intergenic
GTGATGACTGGTTCTGGTAT+GGG 0.394646 4_1:-79575995 None:intergenic
GCCTTGGAGCTGGTCTTGCA+TGG 0.396282 4_1:+79576223 Msa0575670:CDS
ACCAGTTGTTTCATCAACTA+AGG 0.400326 4_1:+79576155 Msa0575670:CDS
GTTATTGTGCCTCCTGAATT+GGG 0.401025 4_1:+79576776 Msa0575670:CDS
AGTAGTGTGACATGAAAATA+TGG 0.403476 4_1:+79577113 Msa0575670:three_prime_UTR
TGTGATGACTGGTTCTGGTA+TGG 0.408947 4_1:-79575996 None:intergenic
GTTGTTGACTGTGGAGATAA+TGG 0.413539 4_1:-79576069 None:intergenic
TATGCCAAGGCGAGGTGATT+TGG 0.421986 4_1:+79576580 Msa0575670:CDS
CCTTGGAGCTGGTCTTGCAT+GGG 0.424931 4_1:+79576224 Msa0575670:CDS
TTGGTTGTGATTGATATAAT+GGG 0.427668 4_1:+79576599 Msa0575670:CDS
GAATGTTGAGGAGGAGAAAG+AGG 0.427854 4_1:+79576426 Msa0575670:CDS
ACTTCCTTGACCAGACGGTT+TGG 0.433297 4_1:+79576201 Msa0575670:CDS
AGACGGTTTGGCCTTGGAGC+TGG 0.438403 4_1:+79576213 Msa0575670:CDS
GCATGTACACTAGAGTGCTT+TGG 0.438433 4_1:+79576924 Msa0575670:three_prime_UTR
AGGAATCTGTTGCTGTGCTT+TGG 0.442859 4_1:-79576127 None:intergenic
TGATGACTGGTTCTGGTATG+GGG 0.448826 4_1:-79575994 None:intergenic
ACCTTAGTTGATGAAACAAC+TGG 0.450082 4_1:-79576156 None:intergenic
AGTGATGTGATGACTGGTTC+TGG 0.451572 4_1:-79576001 None:intergenic
GGGGTCAAGGCCATATAGTA+AGG 0.452971 4_1:+79576694 Msa0575670:CDS
AGCTCCAAGGCCAAACCGTC+TGG 0.454662 4_1:-79576211 None:intergenic
GGAGCTGGTCTTGCATGGGT+TGG 0.455263 4_1:+79576228 Msa0575670:CDS
AAAGAGGTGATTCTGCCTAA+TGG 0.469758 4_1:+79576442 Msa0575670:CDS
GTGTTTGTGAACACATTTGA+AGG 0.494203 4_1:+79576644 Msa0575670:CDS
CACAACAAGAATCTAATACA+AGG 0.494667 4_1:+79576304 Msa0575670:CDS
GGTTGCGGTTGTTGTGGTGG+AGG 0.494679 4_1:-79576039 None:intergenic
AGGTACTACGAATTGAAAAT+CGG 0.495615 4_1:+79576548 Msa0575670:intron
GAATTGGGATTTAGAGAGAA+TGG 0.496442 4_1:+79576791 Msa0575670:CDS
AACACTTGAATACGTTGTAC+AGG 0.502708 4_1:+79576853 Msa0575670:CDS
GAGGGTTGCGGTTGTTGTGG+TGG 0.510547 4_1:-79576042 None:intergenic
AAACCGTCTGGTCAAGGAAG+TGG 0.514843 4_1:-79576199 None:intergenic
CCTGAGGGTTGCGGTTGTTG+TGG 0.518773 4_1:-79576045 None:intergenic
TGATTCTGCCTAATGGCATA+AGG 0.521446 4_1:+79576449 Msa0575670:CDS
TTCAAATTTGTTGTTGACTG+TGG 0.526248 4_1:-79576078 None:intergenic
AATGGTGCTGATTTAGGGTC+TGG 0.527304 4_1:+79576809 Msa0575670:CDS
ATGGGAAAGGTTGAAAGCAC+AGG 0.529021 4_1:+79576617 Msa0575670:CDS
CCACAACAACCGCAACCCTC+AGG 0.533605 4_1:+79576045 Msa0575670:CDS
CTATGAAGGCAGGAGGGAAG+AGG 0.543711 4_1:+79576750 Msa0575670:CDS
TATAGTAAGGGTGTGTGTGA+AGG 0.554244 4_1:+79576707 Msa0575670:CDS
ATAGTAAGGGTGTGTGTGAA+GGG 0.556262 4_1:+79576708 Msa0575670:CDS
GAATCATCAAGCAGGTGCAA+TGG 0.557467 4_1:-79576888 None:intergenic
TTGTATTCATAGGAATGTTG+AGG 0.558846 4_1:+79576414 Msa0575670:intron
TTGCCACTTCCTTGACCAGA+CGG 0.563085 4_1:+79576196 Msa0575670:CDS
TGGCTCTAGTTATGGGGTCA+AGG 0.567583 4_1:+79576681 Msa0575670:CDS
TGAAGGAGACAAGAAACCAT+TGG 0.568456 4_1:+79576661 Msa0575670:CDS
CTAAGGTTGATTCCACAGAC+TGG 0.569193 4_1:+79576172 Msa0575670:CDS
TTTAATCAGAATCATCAAGC+AGG 0.570592 4_1:-79576896 None:intergenic
AAGGCCAAACCGTCTGGTCA+AGG 0.575540 4_1:-79576205 None:intergenic
GACCCCATAACTAGAGCCAA+TGG 0.581524 4_1:-79576677 None:intergenic
TATCATTATTATCCTAAACA+TGG 0.588227 4_1:+79575936 Msa0575670:exon
GATAATGGACCTGAGGGTTG+CGG 0.588310 4_1:-79576054 None:intergenic
TATTCATAGGAATGTTGAGG+AGG 0.588540 4_1:+79576417 Msa0575670:intron
TGTGATTGATATAATGGGAA+AGG 0.597131 4_1:+79576604 Msa0575670:CDS
GATGACTGGTTCTGGTATGG+GGG 0.597654 4_1:-79575993 None:intergenic
ACAACCAAATCACCTCGCCT+TGG 0.600709 4_1:-79576584 None:intergenic
TATTCAAGTGTTGCAAGTGG+AGG 0.610335 4_1:-79576842 None:intergenic
CCCATGCAAGACCAGCTCCA+AGG 0.610919 4_1:-79576224 None:intergenic
GGAAGTGGCAATCCAGTCTG+TGG 0.620097 4_1:-79576184 None:intergenic
GGGTCAAGGCCATATAGTAA+GGG 0.620171 4_1:+79576695 Msa0575670:CDS
TACGAATTGAAAATCGGTGG+TGG 0.623956 4_1:+79576554 Msa0575670:CDS
TCGGTGGTGGTGATATGCCA+AGG 0.624769 4_1:+79576567 Msa0575670:CDS
TGAAGAAGTGATGTGATGAC+TGG 0.628381 4_1:-79576007 None:intergenic
AACCATTGGCTCTAGTTATG+GGG 0.638329 4_1:+79576675 Msa0575670:CDS
ACGTATTCAAGTGTTGCAAG+TGG 0.645589 4_1:-79576845 None:intergenic
CTGTGGAGATAATGGACCTG+AGG 0.664299 4_1:-79576061 None:intergenic
GGGGAGTAAGAAAATTGATG+AGG 0.664361 4_1:-79575974 None:intergenic
TCTCTAAATCCCAATTCAGG+AGG 0.664404 4_1:-79576785 None:intergenic
TGCTGATTTAGGGTCTGGTG+TGG 0.665665 4_1:+79576814 Msa0575670:CDS
TACTACGAATTGAAAATCGG+TGG 0.676042 4_1:+79576551 Msa0575670:CDS
TGTGGAGATAATGGACCTGA+GGG 0.682825 4_1:-79576060 None:intergenic
AGTGTGACATGAAAATATGG+TGG 0.709386 4_1:+79577116 Msa0575670:three_prime_UTR
GGTGGTGATATGCCAAGGCG+AGG 0.718124 4_1:+79576572 Msa0575670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATGATAATAAGTTTGATT+TGG - chr4_1:79575924-79575943 None:intergenic 15.0%
!! TTATCAAAATCATATATGAA+TGG + chr4_1:79576365-79576384 Msa0575670:intron 15.0%
!!! AATGATATTTTTGTATTCAT+AGG + chr4_1:79576404-79576423 Msa0575670:intron 15.0%
!!! ATTTTGTATGGATTAAATAT+AGG + chr4_1:79576993-79577012 Msa0575670:three_prime_UTR 15.0%
!!! GCAAAATAGTTTATTTTAAT+TGG - chr4_1:79577057-79577076 None:intergenic 15.0%
!!! GATATATTTAGAGTTTTTAA+TGG - chr4_1:79577182-79577201 None:intergenic 15.0%
!! TAATGATAATAAGTTTGATT+TGG - chr4_1:79575924-79575943 None:intergenic 15.0%
!! TTATCAAAATCATATATGAA+TGG + chr4_1:79576365-79576384 Msa0575670:intron 15.0%
!!! AATGATATTTTTGTATTCAT+AGG + chr4_1:79576404-79576423 Msa0575670:intron 15.0%
!!! ATTTTGTATGGATTAAATAT+AGG + chr4_1:79576993-79577012 Msa0575670:three_prime_UTR 15.0%
!!! GCAAAATAGTTTATTTTAAT+TGG - chr4_1:79577057-79577076 None:intergenic 15.0%
!!! GATATATTTAGAGTTTTTAA+TGG - chr4_1:79577182-79577201 None:intergenic 15.0%
!! TATCATTATTATCCTAAACA+TGG + chr4_1:79575936-79575955 Msa0575670:exon 20.0%
!! ATATGTACTAAAAACTATGA+AGG + chr4_1:79576736-79576755 Msa0575670:CDS 20.0%
!!! ATTTCATTCATCATTTTGTA+TGG + chr4_1:79576981-79577000 Msa0575670:three_prime_UTR 20.0%
!! TATCATTATTATCCTAAACA+TGG + chr4_1:79575936-79575955 Msa0575670:exon 20.0%
!! ATATGTACTAAAAACTATGA+AGG + chr4_1:79576736-79576755 Msa0575670:CDS 20.0%
!!! ATTTCATTCATCATTTTGTA+TGG + chr4_1:79576981-79577000 Msa0575670:three_prime_UTR 20.0%
! TCTCAGAACAAATAAAAACT+CGG + chr4_1:79576271-79576290 Msa0575670:CDS 25.0%
! ATAATTAACCTTATGCCATT+AGG - chr4_1:79576460-79576479 None:intergenic 25.0%
! TTTGGTTGTGATTGATATAA+TGG + chr4_1:79576598-79576617 Msa0575670:CDS 25.0%
! TTGGTTGTGATTGATATAAT+GGG + chr4_1:79576599-79576618 Msa0575670:CDS 25.0%
! ATACATGTCAGTGTAAAATA+TGG + chr4_1:79577027-79577046 Msa0575670:three_prime_UTR 25.0%
! TTTACAAAAATGTAGTGATG+TGG - chr4_1:79577079-79577098 None:intergenic 25.0%
! TCTCAGAACAAATAAAAACT+CGG + chr4_1:79576271-79576290 Msa0575670:CDS 25.0%
! ATAATTAACCTTATGCCATT+AGG - chr4_1:79576460-79576479 None:intergenic 25.0%
! TTTGGTTGTGATTGATATAA+TGG + chr4_1:79576598-79576617 Msa0575670:CDS 25.0%
! TTGGTTGTGATTGATATAAT+GGG + chr4_1:79576599-79576618 Msa0575670:CDS 25.0%
! ATACATGTCAGTGTAAAATA+TGG + chr4_1:79577027-79577046 Msa0575670:three_prime_UTR 25.0%
! TTTACAAAAATGTAGTGATG+TGG - chr4_1:79577079-79577098 None:intergenic 25.0%
!! TTCAAATTTGTTGTTGACTG+TGG - chr4_1:79576081-79576100 None:intergenic 30.0%
! GATGAAACAACTGGTTTAAT+AGG - chr4_1:79576150-79576169 None:intergenic 30.0%
CACAACAAGAATCTAATACA+AGG + chr4_1:79576304-79576323 Msa0575670:CDS 30.0%
TTGTATTCATAGGAATGTTG+AGG + chr4_1:79576414-79576433 Msa0575670:intron 30.0%
AGGTACTACGAATTGAAAAT+CGG + chr4_1:79576548-79576567 Msa0575670:intron 30.0%
! TGTGATTGATATAATGGGAA+AGG + chr4_1:79576604-79576623 Msa0575670:CDS 30.0%
TTTAATCAGAATCATCAAGC+AGG - chr4_1:79576899-79576918 None:intergenic 30.0%
AGTAGTGTGACATGAAAATA+TGG + chr4_1:79577113-79577132 Msa0575670:three_prime_UTR 30.0%
!! TTCAAATTTGTTGTTGACTG+TGG - chr4_1:79576081-79576100 None:intergenic 30.0%
! GATGAAACAACTGGTTTAAT+AGG - chr4_1:79576150-79576169 None:intergenic 30.0%
CACAACAAGAATCTAATACA+AGG + chr4_1:79576304-79576323 Msa0575670:CDS 30.0%
TTGTATTCATAGGAATGTTG+AGG + chr4_1:79576414-79576433 Msa0575670:intron 30.0%
AGGTACTACGAATTGAAAAT+CGG + chr4_1:79576548-79576567 Msa0575670:intron 30.0%
! TGTGATTGATATAATGGGAA+AGG + chr4_1:79576604-79576623 Msa0575670:CDS 30.0%
TTTAATCAGAATCATCAAGC+AGG - chr4_1:79576899-79576918 None:intergenic 30.0%
AGTAGTGTGACATGAAAATA+TGG + chr4_1:79577113-79577132 Msa0575670:three_prime_UTR 30.0%
CAAAGATAGTAGCCATGTTT+AGG - chr4_1:79575951-79575970 None:intergenic 35.0%
CTAAACATGGCTACTATCTT+TGG + chr4_1:79575949-79575968 Msa0575670:exon 35.0%
! ACCAGTTGTTTCATCAACTA+AGG + chr4_1:79576155-79576174 Msa0575670:CDS 35.0%
!! ACCTTAGTTGATGAAACAAC+TGG - chr4_1:79576159-79576178 None:intergenic 35.0%
! ACAAATAAAAACTCGGCTTG+AGG + chr4_1:79576278-79576297 Msa0575670:CDS 35.0%
TATTCATAGGAATGTTGAGG+AGG + chr4_1:79576417-79576436 Msa0575670:intron 35.0%
TACTACGAATTGAAAATCGG+TGG + chr4_1:79576551-79576570 Msa0575670:CDS 35.0%
GTGTTTGTGAACACATTTGA+AGG + chr4_1:79576644-79576663 Msa0575670:CDS 35.0%
!! AAACCATTGGCTCTAGTTAT+GGG + chr4_1:79576674-79576693 Msa0575670:CDS 35.0%
GTACTAAAAACTATGAAGGC+AGG + chr4_1:79576740-79576759 Msa0575670:CDS 35.0%
TAAAAACTATGAAGGCAGGA+GGG + chr4_1:79576744-79576763 Msa0575670:CDS 35.0%
TTCTCTCTAAATCCCAATTC+AGG - chr4_1:79576791-79576810 None:intergenic 35.0%
GAATTGGGATTTAGAGAGAA+TGG + chr4_1:79576791-79576810 Msa0575670:CDS 35.0%
AACACTTGAATACGTTGTAC+AGG + chr4_1:79576853-79576872 Msa0575670:CDS 35.0%
AGTGTGACATGAAAATATGG+TGG + chr4_1:79577116-79577135 Msa0575670:three_prime_UTR 35.0%
CAAAGATAGTAGCCATGTTT+AGG - chr4_1:79575951-79575970 None:intergenic 35.0%
CTAAACATGGCTACTATCTT+TGG + chr4_1:79575949-79575968 Msa0575670:exon 35.0%
! ACCAGTTGTTTCATCAACTA+AGG + chr4_1:79576155-79576174 Msa0575670:CDS 35.0%
!! ACCTTAGTTGATGAAACAAC+TGG - chr4_1:79576159-79576178 None:intergenic 35.0%
! ACAAATAAAAACTCGGCTTG+AGG + chr4_1:79576278-79576297 Msa0575670:CDS 35.0%
TATTCATAGGAATGTTGAGG+AGG + chr4_1:79576417-79576436 Msa0575670:intron 35.0%
TACTACGAATTGAAAATCGG+TGG + chr4_1:79576551-79576570 Msa0575670:CDS 35.0%
GTGTTTGTGAACACATTTGA+AGG + chr4_1:79576644-79576663 Msa0575670:CDS 35.0%
!! AAACCATTGGCTCTAGTTAT+GGG + chr4_1:79576674-79576693 Msa0575670:CDS 35.0%
GTACTAAAAACTATGAAGGC+AGG + chr4_1:79576740-79576759 Msa0575670:CDS 35.0%
TAAAAACTATGAAGGCAGGA+GGG + chr4_1:79576744-79576763 Msa0575670:CDS 35.0%
TTCTCTCTAAATCCCAATTC+AGG - chr4_1:79576791-79576810 None:intergenic 35.0%
GAATTGGGATTTAGAGAGAA+TGG + chr4_1:79576791-79576810 Msa0575670:CDS 35.0%
AACACTTGAATACGTTGTAC+AGG + chr4_1:79576853-79576872 Msa0575670:CDS 35.0%
AGTGTGACATGAAAATATGG+TGG + chr4_1:79577116-79577135 Msa0575670:three_prime_UTR 35.0%
GGGGAGTAAGAAAATTGATG+AGG - chr4_1:79575977-79575996 None:intergenic 40.0%
TGAAGAAGTGATGTGATGAC+TGG - chr4_1:79576010-79576029 None:intergenic 40.0%
! GTTGTTGACTGTGGAGATAA+TGG - chr4_1:79576072-79576091 None:intergenic 40.0%
!!! TGGGTTGGTTTTCTTGCATT+TGG + chr4_1:79576243-79576262 Msa0575670:CDS 40.0%
AAAGAGGTGATTCTGCCTAA+TGG + chr4_1:79576442-79576461 Msa0575670:CDS 40.0%
TGATTCTGCCTAATGGCATA+AGG + chr4_1:79576449-79576468 Msa0575670:CDS 40.0%
!! CGACTCATTTTTGTCTCTAC+AGG + chr4_1:79576528-79576547 Msa0575670:intron 40.0%
TACGAATTGAAAATCGGTGG+TGG + chr4_1:79576554-79576573 Msa0575670:CDS 40.0%
TGAAGGAGACAAGAAACCAT+TGG + chr4_1:79576661-79576680 Msa0575670:CDS 40.0%
!! GAAACCATTGGCTCTAGTTA+TGG + chr4_1:79576673-79576692 Msa0575670:CDS 40.0%
!! AACCATTGGCTCTAGTTATG+GGG + chr4_1:79576675-79576694 Msa0575670:CDS 40.0%
TCACACACACCCTTACTATA+TGG - chr4_1:79576707-79576726 None:intergenic 40.0%
! TATAGTAAGGGTGTGTGTGA+AGG + chr4_1:79576707-79576726 Msa0575670:CDS 40.0%
! ATAGTAAGGGTGTGTGTGAA+GGG + chr4_1:79576708-79576727 Msa0575670:CDS 40.0%
CTAAAAACTATGAAGGCAGG+AGG + chr4_1:79576743-79576762 Msa0575670:CDS 40.0%
AGTTATTGTGCCTCCTGAAT+TGG + chr4_1:79576775-79576794 Msa0575670:CDS 40.0%
GTTATTGTGCCTCCTGAATT+GGG + chr4_1:79576776-79576795 Msa0575670:CDS 40.0%
TCTCTAAATCCCAATTCAGG+AGG - chr4_1:79576788-79576807 None:intergenic 40.0%
!! AGAGAGAATGGTGCTGATTT+AGG + chr4_1:79576803-79576822 Msa0575670:CDS 40.0%
!! GAGAGAATGGTGCTGATTTA+GGG + chr4_1:79576804-79576823 Msa0575670:CDS 40.0%
! TATTCAAGTGTTGCAAGTGG+AGG - chr4_1:79576845-79576864 None:intergenic 40.0%
! ACGTATTCAAGTGTTGCAAG+TGG - chr4_1:79576848-79576867 None:intergenic 40.0%
GGGGAGTAAGAAAATTGATG+AGG - chr4_1:79575977-79575996 None:intergenic 40.0%
TGAAGAAGTGATGTGATGAC+TGG - chr4_1:79576010-79576029 None:intergenic 40.0%
! GTTGTTGACTGTGGAGATAA+TGG - chr4_1:79576072-79576091 None:intergenic 40.0%
!!! TGGGTTGGTTTTCTTGCATT+TGG + chr4_1:79576243-79576262 Msa0575670:CDS 40.0%
AAAGAGGTGATTCTGCCTAA+TGG + chr4_1:79576442-79576461 Msa0575670:CDS 40.0%
TGATTCTGCCTAATGGCATA+AGG + chr4_1:79576449-79576468 Msa0575670:CDS 40.0%
!! CGACTCATTTTTGTCTCTAC+AGG + chr4_1:79576528-79576547 Msa0575670:intron 40.0%
TACGAATTGAAAATCGGTGG+TGG + chr4_1:79576554-79576573 Msa0575670:CDS 40.0%
TGAAGGAGACAAGAAACCAT+TGG + chr4_1:79576661-79576680 Msa0575670:CDS 40.0%
!! GAAACCATTGGCTCTAGTTA+TGG + chr4_1:79576673-79576692 Msa0575670:CDS 40.0%
!! AACCATTGGCTCTAGTTATG+GGG + chr4_1:79576675-79576694 Msa0575670:CDS 40.0%
TCACACACACCCTTACTATA+TGG - chr4_1:79576707-79576726 None:intergenic 40.0%
! TATAGTAAGGGTGTGTGTGA+AGG + chr4_1:79576707-79576726 Msa0575670:CDS 40.0%
! ATAGTAAGGGTGTGTGTGAA+GGG + chr4_1:79576708-79576727 Msa0575670:CDS 40.0%
CTAAAAACTATGAAGGCAGG+AGG + chr4_1:79576743-79576762 Msa0575670:CDS 40.0%
AGTTATTGTGCCTCCTGAAT+TGG + chr4_1:79576775-79576794 Msa0575670:CDS 40.0%
GTTATTGTGCCTCCTGAATT+GGG + chr4_1:79576776-79576795 Msa0575670:CDS 40.0%
TCTCTAAATCCCAATTCAGG+AGG - chr4_1:79576788-79576807 None:intergenic 40.0%
!! AGAGAGAATGGTGCTGATTT+AGG + chr4_1:79576803-79576822 Msa0575670:CDS 40.0%
!! GAGAGAATGGTGCTGATTTA+GGG + chr4_1:79576804-79576823 Msa0575670:CDS 40.0%
! TATTCAAGTGTTGCAAGTGG+AGG - chr4_1:79576845-79576864 None:intergenic 40.0%
! ACGTATTCAAGTGTTGCAAG+TGG - chr4_1:79576848-79576867 None:intergenic 40.0%
!! TGATGACTGGTTCTGGTATG+GGG - chr4_1:79575997-79576016 None:intergenic 45.0%
!! GTGATGACTGGTTCTGGTAT+GGG - chr4_1:79575998-79576017 None:intergenic 45.0%
!! TGTGATGACTGGTTCTGGTA+TGG - chr4_1:79575999-79576018 None:intergenic 45.0%
! AGTGATGTGATGACTGGTTC+TGG - chr4_1:79576004-79576023 None:intergenic 45.0%
!! TGTGGAGATAATGGACCTGA+GGG - chr4_1:79576063-79576082 None:intergenic 45.0%
AGGAATCTGTTGCTGTGCTT+TGG - chr4_1:79576130-79576149 None:intergenic 45.0%
! CTAAGGTTGATTCCACAGAC+TGG + chr4_1:79576172-79576191 Msa0575670:CDS 45.0%
GAATGTTGAGGAGGAGAAAG+AGG + chr4_1:79576426-79576445 Msa0575670:CDS 45.0%
! ATGGGAAAGGTTGAAAGCAC+AGG + chr4_1:79576617-79576636 Msa0575670:CDS 45.0%
GGGTCAAGGCCATATAGTAA+GGG + chr4_1:79576695-79576714 Msa0575670:CDS 45.0%
!! AATGGTGCTGATTTAGGGTC+TGG + chr4_1:79576809-79576828 Msa0575670:CDS 45.0%
GAATCATCAAGCAGGTGCAA+TGG - chr4_1:79576891-79576910 None:intergenic 45.0%
! GCATGTACACTAGAGTGCTT+TGG + chr4_1:79576924-79576943 Msa0575670:three_prime_UTR 45.0%
!! TGATGACTGGTTCTGGTATG+GGG - chr4_1:79575997-79576016 None:intergenic 45.0%
!! GTGATGACTGGTTCTGGTAT+GGG - chr4_1:79575998-79576017 None:intergenic 45.0%
!! TGTGATGACTGGTTCTGGTA+TGG - chr4_1:79575999-79576018 None:intergenic 45.0%
! AGTGATGTGATGACTGGTTC+TGG - chr4_1:79576004-79576023 None:intergenic 45.0%
!! TGTGGAGATAATGGACCTGA+GGG - chr4_1:79576063-79576082 None:intergenic 45.0%
AGGAATCTGTTGCTGTGCTT+TGG - chr4_1:79576130-79576149 None:intergenic 45.0%
! CTAAGGTTGATTCCACAGAC+TGG + chr4_1:79576172-79576191 Msa0575670:CDS 45.0%
GAATGTTGAGGAGGAGAAAG+AGG + chr4_1:79576426-79576445 Msa0575670:CDS 45.0%
! ATGGGAAAGGTTGAAAGCAC+AGG + chr4_1:79576617-79576636 Msa0575670:CDS 45.0%
GGGTCAAGGCCATATAGTAA+GGG + chr4_1:79576695-79576714 Msa0575670:CDS 45.0%
!! AATGGTGCTGATTTAGGGTC+TGG + chr4_1:79576809-79576828 Msa0575670:CDS 45.0%
GAATCATCAAGCAGGTGCAA+TGG - chr4_1:79576891-79576910 None:intergenic 45.0%
! GCATGTACACTAGAGTGCTT+TGG + chr4_1:79576924-79576943 Msa0575670:three_prime_UTR 45.0%
!! GATGACTGGTTCTGGTATGG+GGG - chr4_1:79575996-79576015 None:intergenic 50.0%
!! GATAATGGACCTGAGGGTTG+CGG - chr4_1:79576057-79576076 None:intergenic 50.0%
!! CTGTGGAGATAATGGACCTG+AGG - chr4_1:79576064-79576083 None:intergenic 50.0%
! TTGCCACTTCCTTGACCAGA+CGG + chr4_1:79576196-79576215 Msa0575670:CDS 50.0%
AAACCGTCTGGTCAAGGAAG+TGG - chr4_1:79576202-79576221 None:intergenic 50.0%
ACTTCCTTGACCAGACGGTT+TGG + chr4_1:79576201-79576220 Msa0575670:CDS 50.0%
TATGCCAAGGCGAGGTGATT+TGG + chr4_1:79576580-79576599 Msa0575670:CDS 50.0%
ACAACCAAATCACCTCGCCT+TGG - chr4_1:79576587-79576606 None:intergenic 50.0%
GACCCCATAACTAGAGCCAA+TGG - chr4_1:79576680-79576699 None:intergenic 50.0%
!! TGGCTCTAGTTATGGGGTCA+AGG + chr4_1:79576681-79576700 Msa0575670:CDS 50.0%
GGGGTCAAGGCCATATAGTA+AGG + chr4_1:79576694-79576713 Msa0575670:CDS 50.0%
!! TGCTGATTTAGGGTCTGGTG+TGG + chr4_1:79576814-79576833 Msa0575670:CDS 50.0%
!! GATGACTGGTTCTGGTATGG+GGG - chr4_1:79575996-79576015 None:intergenic 50.0%
!! GATAATGGACCTGAGGGTTG+CGG - chr4_1:79576057-79576076 None:intergenic 50.0%
!! CTGTGGAGATAATGGACCTG+AGG - chr4_1:79576064-79576083 None:intergenic 50.0%
! TTGCCACTTCCTTGACCAGA+CGG + chr4_1:79576196-79576215 Msa0575670:CDS 50.0%
AAACCGTCTGGTCAAGGAAG+TGG - chr4_1:79576202-79576221 None:intergenic 50.0%
ACTTCCTTGACCAGACGGTT+TGG + chr4_1:79576201-79576220 Msa0575670:CDS 50.0%
TATGCCAAGGCGAGGTGATT+TGG + chr4_1:79576580-79576599 Msa0575670:CDS 50.0%
ACAACCAAATCACCTCGCCT+TGG - chr4_1:79576587-79576606 None:intergenic 50.0%
GACCCCATAACTAGAGCCAA+TGG - chr4_1:79576680-79576699 None:intergenic 50.0%
!! TGGCTCTAGTTATGGGGTCA+AGG + chr4_1:79576681-79576700 Msa0575670:CDS 50.0%
GGGGTCAAGGCCATATAGTA+AGG + chr4_1:79576694-79576713 Msa0575670:CDS 50.0%
!! TGCTGATTTAGGGTCTGGTG+TGG + chr4_1:79576814-79576833 Msa0575670:CDS 50.0%
GGAAGTGGCAATCCAGTCTG+TGG - chr4_1:79576187-79576206 None:intergenic 55.0%
AAGGCCAAACCGTCTGGTCA+AGG - chr4_1:79576208-79576227 None:intergenic 55.0%
! TTGACCAGACGGTTTGGCCT+TGG + chr4_1:79576207-79576226 Msa0575670:CDS 55.0%
!! CCTTGGAGCTGGTCTTGCAT+GGG + chr4_1:79576224-79576243 Msa0575670:CDS 55.0%
! TCGGTGGTGGTGATATGCCA+AGG + chr4_1:79576567-79576586 Msa0575670:CDS 55.0%
CTATGAAGGCAGGAGGGAAG+AGG + chr4_1:79576750-79576769 Msa0575670:CDS 55.0%
GGAAGTGGCAATCCAGTCTG+TGG - chr4_1:79576187-79576206 None:intergenic 55.0%
AAGGCCAAACCGTCTGGTCA+AGG - chr4_1:79576208-79576227 None:intergenic 55.0%
! TTGACCAGACGGTTTGGCCT+TGG + chr4_1:79576207-79576226 Msa0575670:CDS 55.0%
!! CCTTGGAGCTGGTCTTGCAT+GGG + chr4_1:79576224-79576243 Msa0575670:CDS 55.0%
! TCGGTGGTGGTGATATGCCA+AGG + chr4_1:79576567-79576586 Msa0575670:CDS 55.0%
CTATGAAGGCAGGAGGGAAG+AGG + chr4_1:79576750-79576769 Msa0575670:CDS 55.0%
GGTTGCGGTTGTTGTGGTGG+AGG - chr4_1:79576042-79576061 None:intergenic 60.0%
GAGGGTTGCGGTTGTTGTGG+TGG - chr4_1:79576045-79576064 None:intergenic 60.0%
CCTGAGGGTTGCGGTTGTTG+TGG - chr4_1:79576048-79576067 None:intergenic 60.0%
CCACAACAACCGCAACCCTC+AGG + chr4_1:79576045-79576064 Msa0575670:CDS 60.0%
AGCTCCAAGGCCAAACCGTC+TGG - chr4_1:79576214-79576233 None:intergenic 60.0%
!! AGACGGTTTGGCCTTGGAGC+TGG + chr4_1:79576213-79576232 Msa0575670:CDS 60.0%
!! GCCTTGGAGCTGGTCTTGCA+TGG + chr4_1:79576223-79576242 Msa0575670:CDS 60.0%
CCCATGCAAGACCAGCTCCA+AGG - chr4_1:79576227-79576246 None:intergenic 60.0%
!! GGAGCTGGTCTTGCATGGGT+TGG + chr4_1:79576228-79576247 Msa0575670:CDS 60.0%
GGTGGTGATATGCCAAGGCG+AGG + chr4_1:79576572-79576591 Msa0575670:CDS 60.0%
GGTTGCGGTTGTTGTGGTGG+AGG - chr4_1:79576042-79576061 None:intergenic 60.0%
GAGGGTTGCGGTTGTTGTGG+TGG - chr4_1:79576045-79576064 None:intergenic 60.0%
CCTGAGGGTTGCGGTTGTTG+TGG - chr4_1:79576048-79576067 None:intergenic 60.0%
CCACAACAACCGCAACCCTC+AGG + chr4_1:79576045-79576064 Msa0575670:CDS 60.0%
AGCTCCAAGGCCAAACCGTC+TGG - chr4_1:79576214-79576233 None:intergenic 60.0%
!! AGACGGTTTGGCCTTGGAGC+TGG + chr4_1:79576213-79576232 Msa0575670:CDS 60.0%
!! GCCTTGGAGCTGGTCTTGCA+TGG + chr4_1:79576223-79576242 Msa0575670:CDS 60.0%
CCCATGCAAGACCAGCTCCA+AGG - chr4_1:79576227-79576246 None:intergenic 60.0%
!! GGAGCTGGTCTTGCATGGGT+TGG + chr4_1:79576228-79576247 Msa0575670:CDS 60.0%
GGTGGTGATATGCCAAGGCG+AGG + chr4_1:79576572-79576591 Msa0575670:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 79575917 79577205 79575917 ID=Msa0575670;Name=Msa0575670
chr4_1 mRNA 79575917 79577205 79575917 ID=Msa0575670-mRNA-1;Parent=Msa0575670;Name=Msa0575670-mRNA-1;_AED=0.00;_eAED=0.00;_QI=38|1|1|1|1|1|3|301|256
chr4_1 exon 79575917 79576325 79575917 ID=Msa0575670-mRNA-1:exon:28352;Parent=Msa0575670-mRNA-1
chr4_1 exon 79576426 79576470 79576426 ID=Msa0575670-mRNA-1:exon:28353;Parent=Msa0575670-mRNA-1
chr4_1 exon 79576550 79577205 79576550 ID=Msa0575670-mRNA-1:exon:28354;Parent=Msa0575670-mRNA-1
chr4_1 five_prime_UTR 79575917 79575954 79575917 ID=Msa0575670-mRNA-1:five_prime_utr;Parent=Msa0575670-mRNA-1
chr4_1 CDS 79575955 79576325 79575955 ID=Msa0575670-mRNA-1:cds;Parent=Msa0575670-mRNA-1
chr4_1 CDS 79576426 79576470 79576426 ID=Msa0575670-mRNA-1:cds;Parent=Msa0575670-mRNA-1
chr4_1 CDS 79576550 79576904 79576550 ID=Msa0575670-mRNA-1:cds;Parent=Msa0575670-mRNA-1
chr4_1 three_prime_UTR 79576905 79577205 79576905 ID=Msa0575670-mRNA-1:three_prime_utr;Parent=Msa0575670-mRNA-1
Gene Sequence

>Msa0575670

ATGGCTACTATCTTTGGTTCCTCATCAATTTTCTTACTCCCCCATACCAGAACCAGTCATCACATCACTTCTTCATCAGCAACTCCTCCACCACAACAACCGCAACCCTCAGGTCCATTATCTCCACAGTCAACAACAAATTTGAATGAAGATCAGTCAGTGCAAGTCTCTGCCAAAGCACAGCAACAGATTCCTATTAAACCAGTTGTTTCATCAACTAAGGTTGATTCCACAGACTGGATTGCCACTTCCTTGACCAGACGGTTTGGCCTTGGAGCTGGTCTTGCATGGGTTGGTTTTCTTGCATTTGGTGTTGTCTCAGAACAAATAAAAACTCGGCTTGAGGTTTCACAACAAGAATCTAATACAAGGAATGTTGAGGAGGAGAAAGAGGTGATTCTGCCTAATGGCATAAGGTACTACGAATTGAAAATCGGTGGTGGTGATATGCCAAGGCGAGGTGATTTGGTTGTGATTGATATAATGGGAAAGGTTGAAAGCACAGGAGAAGTGTTTGTGAACACATTTGAAGGAGACAAGAAACCATTGGCTCTAGTTATGGGGTCAAGGCCATATAGTAAGGGTGTGTGTGAAGGGATTGAATATGTACTAAAAACTATGAAGGCAGGAGGGAAGAGGAAAGTTATTGTGCCTCCTGAATTGGGATTTAGAGAGAATGGTGCTGATTTAGGGTCTGGTGTGGAAATTCCTCCACTTGCAACACTTGAATACGTTGTACAGGTTGATAAAGTGTCCATTGCACCTGCTTGA

Protein sequence

>Msa0575670

MATIFGSSSIFLLPHTRTSHHITSSSATPPPQQPQPSGPLSPQSTTNLNEDQSVQVSAKAQQQIPIKPVVSSTKVDSTDWIATSLTRRFGLGAGLAWVGFLAFGVVSEQIKTRLEVSQQESNTRNVEEEKEVILPNGIRYYELKIGGGDMPRRGDLVVIDIMGKVESTGEVFVNTFEGDKKPLALVMGSRPYSKGVCEGIEYVLKTMKAGGKRKVIVPPELGFRENGADLGSGVEIPPLATLEYVVQVDKVSIAPA*