AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0122170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0122170 MtrunA17_Chr1g0181891 90.411 292 16 2 1 280 1 292 0.0 518
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0122170 AT5G12130.1 59.236 314 93 5 1 280 1 313 6.64e-109 320
Msa0122170 AT5G12130.2 66.667 252 60 2 53 280 22 273 2.08e-105 310

Find 68 sgRNAs with CRISPR-Local

Find 365 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGCTCTTCTCATCATTTA+AGG 0.091098 1_3:-48510846 Msa0122170:intron
TTGTTACAGGGATCAATTTC+TGG 0.173453 1_3:+48507886 None:intergenic
CGCCTGATAATAATACTTCT+TGG 0.220107 1_3:-48511027 Msa0122170:CDS
CTTAACTTATCTTGTAATTC+TGG 0.225297 1_3:-48513546 Msa0122170:five_prime_UTR
AACCAAAAGAGTGGTATTAT+TGG 0.232223 1_3:-48513518 Msa0122170:five_prime_UTR
CTTGATCGATTTCATTCTTC+AGG 0.260255 1_3:-48513163 Msa0122170:intron
TTAGAAGAAAACACTATAAA+TGG 0.262800 1_3:+48506879 None:intergenic
CTATTAGAGCTGTAGCCTTA+TGG 0.288465 1_3:-48512087 Msa0122170:CDS
TAGAGAACATTACTTGTTAC+AGG 0.291477 1_3:+48507873 None:intergenic
CATTATGATTCAATGGAGTT+TGG 0.307601 1_3:+48513412 None:intergenic
TCAAATTTGAATTATGAGTT+TGG 0.317493 1_3:-48513457 Msa0122170:exon
AGCCAATAATACCACTCTTT+TGG 0.321171 1_3:+48513516 None:intergenic
TTCCAAGAAGTATTATTATC+AGG 0.326520 1_3:+48511025 None:intergenic
GAAGTGGAGTGTAGAGGTTT+TGG 0.332081 1_3:+48513362 None:intergenic
CCTTGTTTATAGATACATAT+TGG 0.332813 1_3:-48511310 Msa0122170:intron
GAGAAAATGAATTGAAACTT+TGG 0.340602 1_3:+48513478 None:intergenic
TATTAGAGCTGTAGCCTTAT+GGG 0.356676 1_3:-48512086 Msa0122170:intron
TAACAAATCAGGATGGGATA+TGG 0.357049 1_3:-48507276 Msa0122170:CDS
TGAATCATAATGCCCTTATC+AGG 0.358661 1_3:-48513401 Msa0122170:CDS
GTACTTTCCTATGGTATTGC+TGG 0.361260 1_3:-48511063 Msa0122170:CDS
TGCATCACCTGATACAAAAC+TGG 0.390885 1_3:+48511225 None:intergenic
GCAATATTGCGGCCAATAGA+AGG 0.394887 1_3:+48510864 None:intergenic
TCTTGGAACAGCCACCATTC+AGG 0.402272 1_3:-48511010 Msa0122170:intron
TGAGGCAGTCAACCTTCTAT+TGG 0.402764 1_3:-48510876 Msa0122170:CDS
AGATAGGACGGTGAAGGAAG+TGG 0.408111 1_3:+48513346 None:intergenic
AAGGCATCAGAATTCTTTGC+TGG 0.414094 1_3:-48511909 Msa0122170:CDS
ATAATGCCCTTATCAGGATC+AGG 0.423375 1_3:-48513395 Msa0122170:CDS
GTTTGCGCCGCAGTAGCATT+TGG 0.429457 1_3:-48511963 Msa0122170:CDS
AATTGAAACTTTGGAGAGAA+GGG 0.436110 1_3:+48513487 None:intergenic
TGAAACCCTGATCCTGATAA+GGG 0.436637 1_3:+48513389 None:intergenic
AAACAAGTTCATAACAAATC+AGG 0.439299 1_3:-48507287 Msa0122170:CDS
TTGAAACCCTGATCCTGATA+AGG 0.444991 1_3:+48513388 None:intergenic
CAGAGATTTACCCACCCATA+AGG 0.448990 1_3:+48512072 None:intergenic
CAGAATCGTGTACTTTCCTA+TGG 0.449268 1_3:-48511072 Msa0122170:CDS
ATGGAGAATACCTGAGGAAA+AGG 0.451694 1_3:+48513320 None:intergenic
ATTGTTGCAGCATATTATGA+TGG 0.458126 1_3:-48507310 Msa0122170:intron
CCTGAGGAAAAGGAAGAGAT+AGG 0.458480 1_3:+48513330 None:intergenic
GCAAGATAGCTTACCCAGAA+TGG 0.477769 1_3:+48506848 None:intergenic
ATAAGGGCATTATGATTCAA+TGG 0.521803 1_3:+48513405 None:intergenic
GTAGCATTTGGTGTTGGTGT+GGG 0.536752 1_3:-48511951 Msa0122170:CDS
TTGAAACTTTGGAGAGAAGG+GGG 0.543010 1_3:+48513489 None:intergenic
AGGAAGAGATAGGACGGTGA+AGG 0.543420 1_3:+48513340 None:intergenic
GAATTGAAACTTTGGAGAGA+AGG 0.547136 1_3:+48513486 None:intergenic
TGATGAGATATCTTCTACTG+AGG 0.548341 1_3:-48512125 Msa0122170:CDS
TTGGCTTCTGTTGTTCACAA+TGG 0.556243 1_3:-48513438 Msa0122170:CDS
GCCGCAGTAGCATTTGGTGT+TGG 0.559997 1_3:-48511957 Msa0122170:CDS
GTGAAGGAAGTGGAGTGTAG+AGG 0.568026 1_3:+48513356 None:intergenic
AGTAGCATTTGGTGTTGGTG+TGG 0.569083 1_3:-48511952 Msa0122170:CDS
TAATGCCCTTATCAGGATCA+GGG 0.576136 1_3:-48513394 Msa0122170:CDS
AGGCATCAGAATTCTTTGCT+GGG 0.578831 1_3:-48511908 Msa0122170:intron
AATGTCACTGAGTTCAATAA+CGG 0.580060 1_3:+48507032 None:intergenic
ATTGAAACTTTGGAGAGAAG+GGG 0.583653 1_3:+48513488 None:intergenic
AGTTCATAACAAATCAGGAT+GGG 0.600192 1_3:-48507282 Msa0122170:CDS
ACCAACACCAAATGCTACTG+CGG 0.603707 1_3:+48511956 None:intergenic
AGAGAACATTACTTGTTACA+GGG 0.606173 1_3:+48507874 None:intergenic
AAATCAGGATGGGATATGGA+TGG 0.609233 1_3:-48507272 Msa0122170:intron
ACGGCTACGGTAAGAAGCAA+AGG 0.614565 1_3:+48507051 None:intergenic
ATTTGTTTGATACATGCAAG+TGG 0.623492 1_3:+48513193 None:intergenic
TGATACATGCAAGTGGAAGA+CGG 0.623537 1_3:+48513200 None:intergenic
ACTGAGTTCAATAACGGCTA+CGG 0.624614 1_3:+48507038 None:intergenic
AAGTTCATAACAAATCAGGA+TGG 0.640212 1_3:-48507283 Msa0122170:CDS
AGGAAAAGGAAGAGATAGGA+CGG 0.645585 1_3:+48513334 None:intergenic
TTGAAAACACACCTGAATGG+TGG 0.653741 1_3:+48510999 None:intergenic
TACGGTAAGAAGCAAAGGTG+TGG 0.654323 1_3:+48507056 None:intergenic
TGATGAGAAGAGCAATATTG+CGG 0.659476 1_3:+48510853 None:intergenic
AACTGCACCAGCAATACCAT+AGG 0.661157 1_3:+48511056 None:intergenic
CTGGCGCAAAACCAAAAGAG+TGG 0.669445 1_3:-48513527 Msa0122170:five_prime_UTR
ATTGGAGCAAAGTCTCTCAG+TGG 0.684312 1_3:-48511292 Msa0122170:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAAAAAAAAAAATAGATTTT+GGG + chr1_3:48507610-48507629 None:intergenic 10.0%
!!! TGAAAAAAAAAAATAGATTT+TGG + chr1_3:48507611-48507630 None:intergenic 10.0%
!!! ATTTTTTTTTTTCAAAAACA+AGG - chr1_3:48507617-48507636 Msa0122170:intron 10.0%
!! CAAAATTTGATATAATTATA+AGG - chr1_3:48508180-48508199 Msa0122170:intron 10.0%
!!! ATTTTTAAAATTTTCTAGAA+TGG - chr1_3:48508539-48508558 Msa0122170:intron 10.0%
!!! TTTTTAAAATTTTCTAGAAT+GGG - chr1_3:48508540-48508559 Msa0122170:intron 10.0%
!! AACTTAATGTATTAAATTAT+TGG - chr1_3:48509254-48509273 Msa0122170:intron 10.0%
!! AAAGTTTAATTAAATTATGA+AGG - chr1_3:48509772-48509791 Msa0122170:intron 10.0%
!!! ATAAATTGGTTTTTTTTTAA+AGG + chr1_3:48510095-48510114 None:intergenic 10.0%
!! TTTAAAAAAAAACCAATTTA+TGG - chr1_3:48510094-48510113 Msa0122170:intron 10.0%
!!! GTTTTTTTATTTATTTTATG+TGG - chr1_3:48510405-48510424 Msa0122170:intron 10.0%
!!! ATTATTTTTATACGAAAAAA+TGG - chr1_3:48510867-48510886 Msa0122170:CDS 10.0%
!!! ATAATACTGTTTTTTTATAA+AGG + chr1_3:48510909-48510928 None:intergenic 10.0%
!!! TTTAAAAGGTGATTTTTTTT+TGG - chr1_3:48507681-48507700 Msa0122170:intron 15.0%
!! ATTTATTCAAAATCTATTCT+TGG - chr1_3:48507769-48507788 Msa0122170:intron 15.0%
!!! TTTTTTTTATTTTTGATCCA+AGG - chr1_3:48507828-48507847 Msa0122170:intron 15.0%
!! TTATGATAAGTAATAAAAAG+TGG - chr1_3:48508144-48508163 Msa0122170:intron 15.0%
!!! TCTTTAAGTTTTTTAATCAT+TGG - chr1_3:48508820-48508839 Msa0122170:intron 15.0%
!!! CTTTAAGTTTTTTAATCATT+GGG - chr1_3:48508821-48508840 Msa0122170:intron 15.0%
!!! TACTATTAAAATTTGCTTTT+AGG + chr1_3:48509887-48509906 None:intergenic 15.0%
!! TTTAATTCTTCAAAGATAAT+TGG - chr1_3:48510608-48510627 Msa0122170:intron 15.0%
!!! AAATTGGTAATATAAATAAG+GGG + chr1_3:48510943-48510962 None:intergenic 15.0%
!!! CAAATTGGTAATATAAATAA+GGG + chr1_3:48510944-48510963 None:intergenic 15.0%
!!! ACAAATTGGTAATATAAATA+AGG + chr1_3:48510945-48510964 None:intergenic 15.0%
!! TGCTATTAATTAATACAAAT+TGG + chr1_3:48510959-48510978 None:intergenic 15.0%
!!! TTTGATTTTTTTTGTGAATT+AGG + chr1_3:48511142-48511161 None:intergenic 15.0%
!! CATAATTAAAAAATGAGTTA+CGG - chr1_3:48511810-48511829 Msa0122170:intron 15.0%
!! ACAATTAAAAAGAATACATA+AGG + chr1_3:48511999-48512018 None:intergenic 15.0%
!! CATCTTAATATATAATACTA+AGG + chr1_3:48512285-48512304 None:intergenic 15.0%
!! TATATATTAAGATGATATCA+AGG - chr1_3:48512291-48512310 Msa0122170:intron 15.0%
!! TCAAATTTGAATTATGAGTT+TGG - chr1_3:48506959-48506978 Msa0122170:intron 20.0%
!! AGTAATTAAGAAGATGAATT+TGG + chr1_3:48507141-48507160 None:intergenic 20.0%
!!! AATAACTTTTGTCATTTTGA+AGG - chr1_3:48507498-48507517 Msa0122170:intron 20.0%
!!! CTCTAAAATGAAAAGTTATT+AGG - chr1_3:48507575-48507594 Msa0122170:intron 20.0%
!!! TTTTTTTTTCAAAAACAAGG+AGG - chr1_3:48507620-48507639 Msa0122170:intron 20.0%
!!! TTGTAATTTGTAGGAATAAA+AGG + chr1_3:48507858-48507877 None:intergenic 20.0%
!! AATAAGCTAAAAACAACTTA+TGG - chr1_3:48508071-48508090 Msa0122170:intron 20.0%
!! ATTAATGTAAATGAAATCAG+AGG + chr1_3:48508413-48508432 None:intergenic 20.0%
!! CATTTACATTAATCTAGTTA+TGG - chr1_3:48508420-48508439 Msa0122170:intron 20.0%
!!! GAATAGAAAAATCAATGTTT+TGG - chr1_3:48508704-48508723 Msa0122170:intron 20.0%
!! AAAGAAACTTCACAAAATAT+TGG + chr1_3:48508805-48508824 None:intergenic 20.0%
!!! TATTGTGTTTTTTGTATTTG+TGG - chr1_3:48509457-48509476 Msa0122170:intron 20.0%
!! TAAATATTGGATAATGAGAA+TGG + chr1_3:48509599-48509618 None:intergenic 20.0%
!!! AGAATGAAGTACTTAAATAT+TGG + chr1_3:48509612-48509631 None:intergenic 20.0%
!! AAAACATATCAACCAATTTA+CGG - chr1_3:48510064-48510083 Msa0122170:intron 20.0%
!!! ATTGGTTTTTTTTTAAAGGA+AGG + chr1_3:48510091-48510110 None:intergenic 20.0%
!!! TTTCCTTATTTTTTGTGTTT+GGG + chr1_3:48510134-48510153 None:intergenic 20.0%
!! ATGCATATATAAGATAAGTT+GGG - chr1_3:48510231-48510250 Msa0122170:intron 20.0%
!! TTTAATCTTCTTATCATGTT+AGG - chr1_3:48510339-48510358 Msa0122170:intron 20.0%
!! ATCAAATTGTCAGAAAATTT+AGG + chr1_3:48510375-48510394 None:intergenic 20.0%
!!! ATTTATTTTATGTGGACATA+TGG - chr1_3:48510413-48510432 Msa0122170:intron 20.0%
!! CCTCTATTGAAAAAAAAAAA+AGG + chr1_3:48510555-48510574 None:intergenic 20.0%
!!! CCTTTTTTTTTTTTCAATAG+AGG - chr1_3:48510552-48510571 Msa0122170:intron 20.0%
!!! TTTTTTTTTTTCAATAGAGG+AGG - chr1_3:48510555-48510574 Msa0122170:intron 20.0%
!! CTAAAAACAATATATAGAGA+AGG + chr1_3:48510747-48510766 None:intergenic 20.0%
!!! TCTCTATATATTGTTTTTAG+AGG - chr1_3:48510747-48510766 Msa0122170:intron 20.0%
!! TTTATCTCTATCATTATACT+TGG - chr1_3:48510829-48510848 Msa0122170:intron 20.0%
!! CTATGATATGATAATTGATA+GGG + chr1_3:48511273-48511292 None:intergenic 20.0%
!! TCTATGATATGATAATTGAT+AGG + chr1_3:48511274-48511293 None:intergenic 20.0%
!! TACCAAGAAATATTGAAAAA+TGG - chr1_3:48511364-48511383 Msa0122170:intron 20.0%
!!! ATCCATTTTTCAATATTTCT+TGG + chr1_3:48511369-48511388 None:intergenic 20.0%
!! ACAATTCTAATAATACTATG+TGG + chr1_3:48511466-48511485 None:intergenic 20.0%
!! AAATATTGAGATCATATTAG+TGG - chr1_3:48511759-48511778 Msa0122170:intron 20.0%
!!! TACATGTTTATTATGGATTA+TGG + chr1_3:48511891-48511910 None:intergenic 20.0%
!! CATTCTTTACATGTTTATTA+TGG + chr1_3:48511898-48511917 None:intergenic 20.0%
!! TTTCAATCATAATGTATTAG+TGG - chr1_3:48512081-48512100 Msa0122170:intron 20.0%
!!! TTTTTTAAACCTCTCAAAAA+AGG - chr1_3:48512211-48512230 Msa0122170:intron 20.0%
!!! AACTTAAAAGTTTAAGGTTT+AGG + chr1_3:48512326-48512345 None:intergenic 20.0%
!! TACTTCAACTTAAAAGTTTA+AGG + chr1_3:48512332-48512351 None:intergenic 20.0%
!!! ATTTTTTCAGAGTAAGATTT+TGG + chr1_3:48513088-48513107 None:intergenic 20.0%
!! AAAATTTCACATTAAATGGA+AGG + chr1_3:48513441-48513460 None:intergenic 20.0%
!! TTAGAAGAAAACACTATAAA+TGG + chr1_3:48513540-48513559 None:intergenic 20.0%
! CTTAACTTATCTTGTAATTC+TGG - chr1_3:48506870-48506889 Msa0122170:CDS 25.0%
! GAGAAAATGAATTGAAACTT+TGG + chr1_3:48506941-48506960 None:intergenic 25.0%
! AATTAAGAAGATGAATTTGG+AGG + chr1_3:48507138-48507157 None:intergenic 25.0%
! ACATGGAAAAAAAGTGAATA+GGG + chr1_3:48507171-48507190 None:intergenic 25.0%
! AAATTAGAGTGCGTTTATTT+AGG - chr1_3:48507453-48507472 Msa0122170:intron 25.0%
!!! TGCGTTTATTTAGGATTTTT+GGG - chr1_3:48507462-48507481 Msa0122170:intron 25.0%
!!! TTTATTTAGGATTTTTGGGA+AGG - chr1_3:48507466-48507485 Msa0122170:intron 25.0%
! AAAAATTTACAGGTTGTGTT+TGG + chr1_3:48507805-48507824 None:intergenic 25.0%
!! TAATTTGTAGGAATAAAAGG+TGG + chr1_3:48507855-48507874 None:intergenic 25.0%
!!! CATGTAGTTTTGTAATTTGT+AGG + chr1_3:48507867-48507886 None:intergenic 25.0%
!! TTTTACAGAAGGTTATGAAA+AGG - chr1_3:48508488-48508507 Msa0122170:intron 25.0%
! AAACTTCACAAAATATTGGT+GGG + chr1_3:48508801-48508820 None:intergenic 25.0%
! CTCTGTGATATACTAATTTA+AGG + chr1_3:48508925-48508944 None:intergenic 25.0%
! GTTTGTAGTTATAGCATATT+TGG - chr1_3:48508963-48508982 Msa0122170:intron 25.0%
! CCAATATGTATCTATAAACA+AGG + chr1_3:48509109-48509128 None:intergenic 25.0%
!! CCTTGTTTATAGATACATAT+TGG - chr1_3:48509106-48509125 Msa0122170:intron 25.0%
! CATGAATGCAAATAATTGAT+CGG - chr1_3:48509295-48509314 Msa0122170:intron 25.0%
!!! TTCCAAGAAGTATTATTATC+AGG + chr1_3:48509394-48509413 None:intergenic 25.0%
!! GATTAATACTGTGATTTTAG+AGG - chr1_3:48509515-48509534 Msa0122170:intron 25.0%
! TCCTTAAAGCTTAAGATATT+AGG - chr1_3:48509680-48509699 Msa0122170:intron 25.0%
! TCCTAATATCTTAAGCTTTA+AGG + chr1_3:48509684-48509703 None:intergenic 25.0%
! AATCTTATATGCTATATGTG+TGG - chr1_3:48510019-48510038 Msa0122170:intron 25.0%
! ATCTTATATGCTATATGTGT+GGG - chr1_3:48510020-48510039 Msa0122170:intron 25.0%
! ATACCCAAACACAAAAAATA+AGG - chr1_3:48510128-48510147 Msa0122170:intron 25.0%
!!! CTTTCCTTATTTTTTGTGTT+TGG + chr1_3:48510135-48510154 None:intergenic 25.0%
! CAAACACAAAAAATAAGGAA+AGG - chr1_3:48510133-48510152 Msa0122170:intron 25.0%
! AATAAGGAAAGGAAAGTAAA+AGG - chr1_3:48510144-48510163 Msa0122170:intron 25.0%
! CATGCATATATAAGATAAGT+TGG - chr1_3:48510230-48510249 Msa0122170:intron 25.0%
! TGCATATATAAGATAAGTTG+GGG - chr1_3:48510232-48510251 Msa0122170:intron 25.0%
! AAAAGTTCCATTCATTAGAT+TGG + chr1_3:48510301-48510320 None:intergenic 25.0%
!!! CTAATGAATGGAACTTTTTT+TGG - chr1_3:48510303-48510322 Msa0122170:intron 25.0%
!! AGCATACATATTTTTCTTTG+AGG - chr1_3:48510457-48510476 Msa0122170:intron 25.0%
! CAATATATAGAGAAGGTTAA+AGG + chr1_3:48510740-48510759 None:intergenic 25.0%
! AGGAAGAAGCTTATTAAAAA+TGG + chr1_3:48511074-48511093 None:intergenic 25.0%
!!! TTATTTTGTTGCATCATTGA+TGG + chr1_3:48511099-48511118 None:intergenic 25.0%
! AAAAATCCACATACACATTA+AGG - chr1_3:48511159-48511178 Msa0122170:intron 25.0%
! TTTATTCCTTAATGTGTATG+TGG + chr1_3:48511168-48511187 None:intergenic 25.0%
! CTTATCTCTTGATTATTAAC+TGG + chr1_3:48511299-48511318 None:intergenic 25.0%
! ATTCTAATAATACTATGTGG+TGG + chr1_3:48511463-48511482 None:intergenic 25.0%
!! GATTTTGTGCATCATATTTT+GGG + chr1_3:48511702-48511721 None:intergenic 25.0%
!! TGATTTTGTGCATCATATTT+TGG + chr1_3:48511703-48511722 None:intergenic 25.0%
! ATATATAATGAGTGAGTGTA+TGG - chr1_3:48511786-48511805 Msa0122170:intron 25.0%
!! TGTTTATTATGGATTATGGA+TGG + chr1_3:48511887-48511906 None:intergenic 25.0%
!! ACAAAAAATTTGAAGTTCCT+AGG + chr1_3:48512389-48512408 None:intergenic 25.0%
!!! GAACTTCAAATTTTTTGTTG+TGG - chr1_3:48512391-48512410 Msa0122170:intron 25.0%
! ATTCAGTTTCAATTGATCAA+CGG + chr1_3:48512694-48512713 None:intergenic 25.0%
! TAGAATAACTAGATATAAGC+TGG - chr1_3:48512846-48512865 Msa0122170:intron 25.0%
!! TGGAGTATTCTAATTACATT+GGG - chr1_3:48512866-48512885 Msa0122170:intron 25.0%
!! AATGCTGGATTAGAATAAAT+AGG - chr1_3:48512911-48512930 Msa0122170:intron 25.0%
! TTGTATACATGTATACATGT+AGG + chr1_3:48512951-48512970 None:intergenic 25.0%
! AAACAAGTTCATAACAAATC+AGG - chr1_3:48513129-48513148 Msa0122170:intron 25.0%
! CCACAAAATTTCACATTAAA+TGG + chr1_3:48513445-48513464 None:intergenic 25.0%
!! CCATTTAATGTGAAATTTTG+TGG - chr1_3:48513442-48513461 Msa0122170:CDS 25.0%
AACCAAAAGAGTGGTATTAT+TGG - chr1_3:48506898-48506917 Msa0122170:CDS 30.0%
! AATTGAAACTTTGGAGAGAA+GGG + chr1_3:48506932-48506951 None:intergenic 30.0%
CATTATGATTCAATGGAGTT+TGG + chr1_3:48507007-48507026 None:intergenic 30.0%
!! ATAAGGGCATTATGATTCAA+TGG + chr1_3:48507014-48507033 None:intergenic 30.0%
CATGGAAAAAAAGTGAATAG+GGG + chr1_3:48507170-48507189 None:intergenic 30.0%
GACATGGAAAAAAAGTGAAT+AGG + chr1_3:48507172-48507191 None:intergenic 30.0%
ATTTGTTTGATACATGCAAG+TGG + chr1_3:48507226-48507245 None:intergenic 30.0%
TCTAACTTGAAGGTAGAAAT+TGG - chr1_3:48507397-48507416 Msa0122170:intron 30.0%
!! GTGCGTTTATTTAGGATTTT+TGG - chr1_3:48507461-48507480 Msa0122170:intron 30.0%
!!! TTTTGAAGGTGTTTTTGTCT+AGG - chr1_3:48507512-48507531 Msa0122170:intron 30.0%
AAGCATTTATGAGACTGTTT+GGG + chr1_3:48508126-48508145 None:intergenic 30.0%
TAAGCATTTATGAGACTGTT+TGG + chr1_3:48508127-48508146 None:intergenic 30.0%
ATCTAGTTATGGTTTCTTAC+AGG - chr1_3:48508431-48508450 Msa0122170:intron 30.0%
!!! TTTTTTTCCTCCTACTAGAT+AGG + chr1_3:48508625-48508644 None:intergenic 30.0%
CTATTCTAGTAGTGTAAAGT+TGG + chr1_3:48508690-48508709 None:intergenic 30.0%
GAAACTTCACAAAATATTGG+TGG + chr1_3:48508802-48508821 None:intergenic 30.0%
GCTTATCAAAGCAGAAATTA+AGG + chr1_3:48508860-48508879 None:intergenic 30.0%
! TAATTTAAGGCCATATTCAC+AGG + chr1_3:48508912-48508931 None:intergenic 30.0%
ATGCTATAACTACAAACTCT+TGG + chr1_3:48508960-48508979 None:intergenic 30.0%
!!! TTGGATATTTTGAAGTACTC+TGG - chr1_3:48509024-48509043 Msa0122170:intron 30.0%
TTTGCAAACTTTGTACTCAA+TGG - chr1_3:48509067-48509086 Msa0122170:intron 30.0%
TTGCAAACTTTGTACTCAAT+GGG - chr1_3:48509068-48509087 Msa0122170:intron 30.0%
AAAGTTTACTCTTGACAAGA+AGG + chr1_3:48509224-48509243 None:intergenic 30.0%
!! ATTTTGAAAACACACCTGAA+TGG + chr1_3:48509423-48509442 None:intergenic 30.0%
! ATTCAGGTGTGTTTTCAAAA+TGG - chr1_3:48509422-48509441 Msa0122170:intron 30.0%
ATCACAGTATTAATCAAGAC+AGG + chr1_3:48509510-48509529 None:intergenic 30.0%
ATTGCTCTTCTCATCATTTA+AGG - chr1_3:48509570-48509589 Msa0122170:intron 30.0%
TTAAGTACTTCATTCTTGCT+TGG - chr1_3:48509616-48509635 Msa0122170:intron 30.0%
AAGCTTAAGATATTAGGACA+TGG - chr1_3:48509686-48509705 Msa0122170:intron 30.0%
ATCACTAAGATGTACTTTCA+AGG + chr1_3:48509919-48509938 None:intergenic 30.0%
! TACATTTTCGGTCCATAAAT+TGG + chr1_3:48510109-48510128 None:intergenic 30.0%
! TGTGTTTGGGTATACATTTT+CGG + chr1_3:48510121-48510140 None:intergenic 30.0%
!! TATGCTTTTCTGCTTTGTTA+AGG + chr1_3:48510182-48510201 None:intergenic 30.0%
ATGATCATGGTAGTAGATTT+GGG - chr1_3:48510203-48510222 Msa0122170:intron 30.0%
AGAGTTTCCAATCTAATGAA+TGG - chr1_3:48510291-48510310 Msa0122170:intron 30.0%
ACTATAACACCAAATTGAAG+AGG - chr1_3:48511008-48511027 Msa0122170:intron 30.0%
GACGATTTATTCATTAGTGT+AGG + chr1_3:48511334-48511353 None:intergenic 30.0%
CATAGAGCTTCAAATATGAA+AGG + chr1_3:48511503-48511522 None:intergenic 30.0%
!! AAACAAGAGTGTTCTATTTG+TGG + chr1_3:48511572-48511591 None:intergenic 30.0%
! CATCACTTTCAAGTAACAAT+TGG + chr1_3:48511669-48511688 None:intergenic 30.0%
! TATTATGGATTATGGATGGA+TGG + chr1_3:48511883-48511902 None:intergenic 30.0%
AACATGTAAAGAATGTGTGA+AGG - chr1_3:48511903-48511922 Msa0122170:intron 30.0%
ACATAAGGTCAAGTAATACA+AGG + chr1_3:48511984-48512003 None:intergenic 30.0%
CTGCTGTATTAATTCATTGT+TGG - chr1_3:48512028-48512047 Msa0122170:intron 30.0%
TATAACACTAAAACAGCTAC+TGG - chr1_3:48512113-48512132 Msa0122170:CDS 30.0%
! AGTTTAAGGTTTAGGATGAT+TGG + chr1_3:48512318-48512337 None:intergenic 30.0%
TTGTGGTATTCACAATTCTA+TGG - chr1_3:48512408-48512427 Msa0122170:intron 30.0%
! AGACTTATCTGACAACTTTT+TGG - chr1_3:48512497-48512516 Msa0122170:intron 30.0%
! AGAGAACATTACTTGTTACA+GGG + chr1_3:48512545-48512564 None:intergenic 30.0%
! TAGAGAACATTACTTGTTAC+AGG + chr1_3:48512546-48512565 None:intergenic 30.0%
!! TTTCTCTCTCTTTTTGTTGT+TGG - chr1_3:48512576-48512595 Msa0122170:intron 30.0%
! TTTTCTGTTGATCACTTGAA+TGG - chr1_3:48512602-48512621 Msa0122170:intron 30.0%
ATAATATCTTCTCAACTCAG+TGG - chr1_3:48512782-48512801 Msa0122170:intron 30.0%
TACCAATGAAAGAAGAATTC+TGG - chr1_3:48512821-48512840 Msa0122170:intron 30.0%
ATCCAGAATTCTTCTTTCAT+TGG + chr1_3:48512826-48512845 None:intergenic 30.0%
! CTGGAGTATTCTAATTACAT+TGG - chr1_3:48512865-48512884 Msa0122170:intron 30.0%
GTATTCTAATTACATTGGGT+TGG - chr1_3:48512870-48512889 Msa0122170:intron 30.0%
ATACTCAAATAAAACGACCA+CGG + chr1_3:48513035-48513054 None:intergenic 30.0%
ATTGTTGCAGCATATTATGA+TGG - chr1_3:48513106-48513125 Msa0122170:intron 30.0%
AAGTTCATAACAAATCAGGA+TGG - chr1_3:48513133-48513152 Msa0122170:intron 30.0%
AGTTCATAACAAATCAGGAT+GGG - chr1_3:48513134-48513153 Msa0122170:intron 30.0%
ATTTCAGCTTGATTTCTAAC+AGG - chr1_3:48513317-48513336 Msa0122170:intron 30.0%
TTTCAGCTTGATTTCTAACA+GGG - chr1_3:48513318-48513337 Msa0122170:intron 30.0%
! TAACAGGGATCAAACATTTT+GGG - chr1_3:48513333-48513352 Msa0122170:CDS 30.0%
AATGTCACTGAGTTCAATAA+CGG + chr1_3:48513387-48513406 None:intergenic 30.0%
TTGTGGTATAAATCTTGACA+CGG - chr1_3:48513459-48513478 Msa0122170:exon 30.0%
! ACACGGTTTTCTTTTCTAAT+AGG - chr1_3:48513476-48513495 Msa0122170:five_prime_UTR 30.0%
! AGCCAATAATACCACTCTTT+TGG + chr1_3:48506903-48506922 None:intergenic 35.0%
! ATTGAAACTTTGGAGAGAAG+GGG + chr1_3:48506931-48506950 None:intergenic 35.0%
! GAATTGAAACTTTGGAGAGA+AGG + chr1_3:48506933-48506952 None:intergenic 35.0%
TGAATCATAATGCCCTTATC+AGG - chr1_3:48507015-48507034 Msa0122170:intron 35.0%
! CTTGATCGATTTCATTCTTC+AGG - chr1_3:48507253-48507272 Msa0122170:intron 35.0%
TGCTTTGATTACACTTCTTG+AGG - chr1_3:48507337-48507356 Msa0122170:intron 35.0%
CAAGTTAGAGTCAATTCTGA+AGG + chr1_3:48507386-48507405 None:intergenic 35.0%
! CAGAATTGACTCTAACTTGA+AGG - chr1_3:48507387-48507406 Msa0122170:intron 35.0%
ACTCTTTATCCAAACAAGAG+AGG + chr1_3:48507898-48507917 None:intergenic 35.0%
CTTATTTCCATAAGCTCTTC+AGG + chr1_3:48508057-48508076 None:intergenic 35.0%
ATCAAGGGCTAAACTAATCA+CGG + chr1_3:48508224-48508243 None:intergenic 35.0%
! TTAGCCCTTGATTTTATGAG+TGG - chr1_3:48508232-48508251 Msa0122170:intron 35.0%
ACCACCACTCATAAAATCAA+GGG + chr1_3:48508239-48508258 None:intergenic 35.0%
TGATGAGATATCTTCTACTG+AGG - chr1_3:48508291-48508310 Msa0122170:intron 35.0%
!! TATTAGAGCTGTAGCCTTAT+GGG - chr1_3:48508330-48508349 Msa0122170:intron 35.0%
CAATCTGAGAACTTACTATG+AGG + chr1_3:48508569-48508588 None:intergenic 35.0%
TGTAGTAGATCCTATCTAGT+AGG - chr1_3:48508612-48508631 Msa0122170:intron 35.0%
AAGCAGGATAAAAAGAAACG+AGG + chr1_3:48508887-48508906 None:intergenic 35.0%
ATTCATGACTAGTGACTTTG+CGG - chr1_3:48509000-48509019 Msa0122170:intron 35.0%
CGCCTGATAATAATACTTCT+TGG - chr1_3:48509389-48509408 Msa0122170:intron 35.0%
CAGTATTAATCAAGACAGGA+TGG + chr1_3:48509506-48509525 None:intergenic 35.0%
!! ACTGTGATTTTAGAGGTTTG+AGG - chr1_3:48509522-48509541 Msa0122170:intron 35.0%
TGATGAGAAGAGCAATATTG+CGG + chr1_3:48509566-48509585 None:intergenic 35.0%
CATTGTTTCCTTGACAAGTA+GGG + chr1_3:48509659-48509678 None:intergenic 35.0%
TCATTGTTTCCTTGACAAGT+AGG + chr1_3:48509660-48509679 None:intergenic 35.0%
! TATCCTCTTTCATGCTACTT+AGG - chr1_3:48509727-48509746 Msa0122170:intron 35.0%
! ATCCTCTTTCATGCTACTTA+GGG - chr1_3:48509728-48509747 Msa0122170:intron 35.0%
TTATCCATAACAACAGAGAG+AGG + chr1_3:48509946-48509965 None:intergenic 35.0%
TTAAAGGAAGGTCCGTAAAT+TGG + chr1_3:48510079-48510098 None:intergenic 35.0%
! CAGAAAAGCATAGATGATCA+TGG - chr1_3:48510190-48510209 Msa0122170:intron 35.0%
GATGATCATGGTAGTAGATT+TGG - chr1_3:48510202-48510221 Msa0122170:intron 35.0%
TGGATGTCACACAAAATGAA+AGG + chr1_3:48510520-48510539 None:intergenic 35.0%
! ATTTTGTGTGACATCCAGAA+TGG - chr1_3:48510523-48510542 Msa0122170:intron 35.0%
! TTTTGTGTGACATCCAGAAT+GGG - chr1_3:48510524-48510543 Msa0122170:intron 35.0%
AAAAAAGGAACTTCCCATTC+TGG + chr1_3:48510540-48510559 None:intergenic 35.0%
AGAGAGATAGATGTGTAACT+TGG - chr1_3:48510707-48510726 Msa0122170:intron 35.0%
TGGATGATTCCTCTTCAATT+TGG + chr1_3:48511020-48511039 None:intergenic 35.0%
GGAATCATCCAATAGTTTCA+TGG - chr1_3:48511029-48511048 Msa0122170:CDS 35.0%
CACTTTCTCCATGAAACTAT+TGG + chr1_3:48511040-48511059 None:intergenic 35.0%
! AGAGTGTTCTATTTGTGGAT+TGG + chr1_3:48511567-48511586 None:intergenic 35.0%
AGATGAAGAGTAAAAGTGAG+TGG - chr1_3:48511610-48511629 Msa0122170:intron 35.0%
ATGTAAAGAATGTGTGAAGG+AGG - chr1_3:48511906-48511925 Msa0122170:intron 35.0%
! TTCTGAAAAAAGTCTCTGCA+GGG + chr1_3:48512188-48512207 None:intergenic 35.0%
! TTTCTGAAAAAAGTCTCTGC+AGG + chr1_3:48512189-48512208 None:intergenic 35.0%
TTAAACCTCTCAAAAAAGGC+AGG - chr1_3:48512215-48512234 Msa0122170:intron 35.0%
AAAAAGGCAGGATTAGGTTT+AGG - chr1_3:48512227-48512246 Msa0122170:intron 35.0%
! CAGGATTAGGTTTAGGTTTA+GGG - chr1_3:48512234-48512253 Msa0122170:intron 35.0%
TATCTCTTCAACAGTATCCT+AGG - chr1_3:48512369-48512388 Msa0122170:intron 35.0%
GTATTCACAATTCTATGGAC+TGG - chr1_3:48512413-48512432 Msa0122170:intron 35.0%
TTGTTACAGGGATCAATTTC+TGG + chr1_3:48512533-48512552 None:intergenic 35.0%
!! TGTTGGCTTATCATTCTACT+AGG - chr1_3:48513003-48513022 Msa0122170:intron 35.0%
TAACAAATCAGGATGGGATA+TGG - chr1_3:48513140-48513159 Msa0122170:intron 35.0%
! CTAACAGGGATCAAACATTT+TGG - chr1_3:48513332-48513351 Msa0122170:CDS 35.0%
CACATTAAATGGAAGGATCA+GGG + chr1_3:48513434-48513453 None:intergenic 35.0%
TCACATTAAATGGAAGGATC+AGG + chr1_3:48513435-48513454 None:intergenic 35.0%
! CGGTTTTCTTTTCTAATAGG+TGG - chr1_3:48513479-48513498 Msa0122170:five_prime_UTR 35.0%
! TTGAAACTTTGGAGAGAAGG+GGG + chr1_3:48506930-48506949 None:intergenic 40.0%
TTGGCTTCTGTTGTTCACAA+TGG - chr1_3:48506978-48506997 Msa0122170:intron 40.0%
ATAATGCCCTTATCAGGATC+AGG - chr1_3:48507021-48507040 Msa0122170:intron 40.0%
TAATGCCCTTATCAGGATCA+GGG - chr1_3:48507022-48507041 Msa0122170:intron 40.0%
TGAAACCCTGATCCTGATAA+GGG + chr1_3:48507030-48507049 None:intergenic 40.0%
TTGAAACCCTGATCCTGATA+AGG + chr1_3:48507031-48507050 None:intergenic 40.0%
AGGAAAAGGAAGAGATAGGA+CGG + chr1_3:48507085-48507104 None:intergenic 40.0%
ATGGAGAATACCTGAGGAAA+AGG + chr1_3:48507099-48507118 None:intergenic 40.0%
TTCCATGTCTGTGATAACAG+TGG - chr1_3:48507183-48507202 Msa0122170:intron 40.0%
ATCCACTGTTATCACAGACA+TGG + chr1_3:48507188-48507207 None:intergenic 40.0%
TGATACATGCAAGTGGAAGA+CGG + chr1_3:48507219-48507238 None:intergenic 40.0%
TAGGAATAAAAGGTGGACCT+TGG + chr1_3:48507848-48507867 None:intergenic 40.0%
! GCTTTTAGTCCTCTCTTGTT+TGG - chr1_3:48507886-48507905 Msa0122170:CDS 40.0%
TCAAGGGCTAAACTAATCAC+GGG + chr1_3:48508223-48508242 None:intergenic 40.0%
CACCACCACTCATAAAATCA+AGG + chr1_3:48508240-48508259 None:intergenic 40.0%
! CTATTAGAGCTGTAGCCTTA+TGG - chr1_3:48508329-48508348 Msa0122170:intron 40.0%
! AAGGCATCAGAATTCTTTGC+TGG - chr1_3:48508507-48508526 Msa0122170:intron 40.0%
AGGCATCAGAATTCTTTGCT+GGG - chr1_3:48508508-48508527 Msa0122170:intron 40.0%
AGTAGATCCTATCTAGTAGG+AGG - chr1_3:48508615-48508634 Msa0122170:intron 40.0%
ATGTGGAATGTGATTGGTGA+TGG + chr1_3:48508778-48508797 None:intergenic 40.0%
CACAAAATATTGGTGGGATG+TGG + chr1_3:48508795-48508814 None:intergenic 40.0%
!! CAAAGTGCCAGTTTTGTATC+AGG - chr1_3:48509184-48509203 Msa0122170:intron 40.0%
TGCATCACCTGATACAAAAC+TGG + chr1_3:48509194-48509213 None:intergenic 40.0%
CAGAATCGTGTACTTTCCTA+TGG - chr1_3:48509344-48509363 Msa0122170:intron 40.0%
GTACTTTCCTATGGTATTGC+TGG - chr1_3:48509353-48509372 Msa0122170:intron 40.0%
TTGAAAACACACCTGAATGG+TGG + chr1_3:48509420-48509439 None:intergenic 40.0%
TTGACAAGTAGGGATGTAGA+AGG + chr1_3:48509649-48509668 None:intergenic 40.0%
TTCTACATCCCTACTTGTCA+AGG - chr1_3:48509648-48509667 Msa0122170:intron 40.0%
ATGAAGGAATGATAGTCACG+AGG - chr1_3:48509788-48509807 Msa0122170:intron 40.0%
! AGTCACGAGGATCAAACTTT+TGG - chr1_3:48509801-48509820 Msa0122170:intron 40.0%
! TCTGCTTTGTTAAGGTGATG+TGG + chr1_3:48510174-48510193 None:intergenic 40.0%
!! TTGTTGCATCATTGATGGTG+AGG + chr1_3:48511094-48511113 None:intergenic 40.0%
!!! GTGAGTTTTGGTGTTGGATT+TGG + chr1_3:48511398-48511417 None:intergenic 40.0%
AATCCAACACCAAAACTCAC+TGG - chr1_3:48511398-48511417 Msa0122170:intron 40.0%
!! AAACCAGTGAGTTTTGGTGT+TGG + chr1_3:48511404-48511423 None:intergenic 40.0%
! AGCTAGAAACCAGTGAGTTT+TGG + chr1_3:48511410-48511429 None:intergenic 40.0%
TTTGCGATAGGACAAGCTTT+AGG + chr1_3:48511542-48511561 None:intergenic 40.0%
TAAAACAGCTACTGGTCAAG+TGG - chr1_3:48512121-48512140 Msa0122170:CDS 40.0%
! AAGTGGTTAAAGTGCTTGGA+TGG - chr1_3:48512138-48512157 Msa0122170:intron 40.0%
!!! CTAATCCTGCCTTTTTTGAG+AGG + chr1_3:48512223-48512242 None:intergenic 40.0%
CTCTCAAAAAAGGCAGGATT+AGG - chr1_3:48512221-48512240 Msa0122170:intron 40.0%
! GCAGGATTAGGTTTAGGTTT+AGG - chr1_3:48512233-48512252 Msa0122170:intron 40.0%
AGCATTCCACAAAGGAACAA+TGG + chr1_3:48512897-48512916 None:intergenic 40.0%
ATTGTTCCTTTGTGGAATGC+TGG - chr1_3:48512896-48512915 Msa0122170:intron 40.0%
TCTAATCCAGCATTCCACAA+AGG + chr1_3:48512905-48512924 None:intergenic 40.0%
AACCATGCTGAATGAAAACC+AGG - chr1_3:48512969-48512988 Msa0122170:intron 40.0%
ACCATGCTGAATGAAAACCA+GGG - chr1_3:48512970-48512989 Msa0122170:intron 40.0%
ACCAGGGGATCATATATTGT+TGG - chr1_3:48512986-48513005 Msa0122170:intron 40.0%
AAATCAGGATGGGATATGGA+TGG - chr1_3:48513144-48513163 Msa0122170:intron 40.0%
ACTGAGTTCAATAACGGCTA+CGG + chr1_3:48513381-48513400 None:intergenic 40.0%
!!! CTGCAGTTTTTGGTGTAACA+CGG - chr1_3:48513511-48513530 Msa0122170:five_prime_UTR 40.0%
!!! TGCAGTTTTTGGTGTAACAC+GGG - chr1_3:48513512-48513531 Msa0122170:five_prime_UTR 40.0%
! GAAGTGGAGTGTAGAGGTTT+TGG + chr1_3:48507057-48507076 None:intergenic 45.0%
CCTGAGGAAAAGGAAGAGAT+AGG + chr1_3:48507089-48507108 None:intergenic 45.0%
! CCTATCTCTTCCTTTTCCTC+AGG - chr1_3:48507086-48507105 Msa0122170:intron 45.0%
AGAGAGATGGAGAATACCTG+AGG + chr1_3:48507105-48507124 None:intergenic 45.0%
! AAGCTAGCCTGAAGAGCTTA+TGG - chr1_3:48508047-48508066 Msa0122170:intron 45.0%
! GCCCTTGATTTTATGAGTGG+TGG - chr1_3:48508235-48508254 Msa0122170:intron 45.0%
CAGAGATTTACCCACCCATA+AGG + chr1_3:48508347-48508366 None:intergenic 45.0%
ACCAACACCAAATGCTACTG+CGG + chr1_3:48508463-48508482 None:intergenic 45.0%
!! AGTAGCATTTGGTGTTGGTG+TGG - chr1_3:48508464-48508483 Msa0122170:intron 45.0%
!! GTAGCATTTGGTGTTGGTGT+GGG - chr1_3:48508465-48508484 Msa0122170:intron 45.0%
! GTTGGTGTGGGTTTTACAGA+AGG - chr1_3:48508477-48508496 Msa0122170:intron 45.0%
!! ATGTGATTGGTGATGGATGG+TGG + chr1_3:48508771-48508790 None:intergenic 45.0%
!! GGAATGTGATTGGTGATGGA+TGG + chr1_3:48508774-48508793 None:intergenic 45.0%
TCCTGCTTCTCCTGTGAATA+TGG - chr1_3:48508899-48508918 Msa0122170:intron 45.0%
TGACTAGTGACTTTGCGGTT+TGG - chr1_3:48509005-48509024 Msa0122170:intron 45.0%
ATTGGAGCAAAGTCTCTCAG+TGG - chr1_3:48509124-48509143 Msa0122170:intron 45.0%
AACTGCACCAGCAATACCAT+AGG + chr1_3:48509363-48509382 None:intergenic 45.0%
TGAGGCAGTCAACCTTCTAT+TGG - chr1_3:48509540-48509559 Msa0122170:intron 45.0%
GCAATATTGCGGCCAATAGA+AGG + chr1_3:48509555-48509574 None:intergenic 45.0%
AGCCCTAAGTAGCATGAAAG+AGG + chr1_3:48509733-48509752 None:intergenic 45.0%
! TTCATGCTACTTAGGGCTTG+AGG - chr1_3:48509735-48509754 Msa0122170:intron 45.0%
TGCAATTTGTATGACCCGTG+CGG + chr1_3:48509853-48509872 None:intergenic 45.0%
CACACCTCTCTCTGTTGTTA+TGG - chr1_3:48509939-48509958 Msa0122170:intron 45.0%
!! AAGCTTTAGGTGGCTACATG+AGG + chr1_3:48511529-48511548 None:intergenic 45.0%
!! TGTGGATTGGAGTTTGCGAT+AGG + chr1_3:48511554-48511573 None:intergenic 45.0%
! GGTCAAGTGGTTAAAGTGCT+TGG - chr1_3:48512134-48512153 Msa0122170:intron 45.0%
! TGGTTAAAGTGCTTGGATGG+AGG - chr1_3:48512141-48512160 Msa0122170:intron 45.0%
TCAACTCAGTGGTTGTACCA+AGG - chr1_3:48512793-48512812 Msa0122170:intron 45.0%
CAACTCAGTGGTTGTACCAA+GGG - chr1_3:48512794-48512813 Msa0122170:intron 45.0%
AACTCAGTGGTTGTACCAAG+GGG - chr1_3:48512795-48512814 Msa0122170:intron 45.0%
CTTTCATTGGTATACCCCCT+TGG + chr1_3:48512813-48512832 None:intergenic 45.0%
GTTGGTCCATTGTTCCTTTG+TGG - chr1_3:48512888-48512907 Msa0122170:intron 45.0%
CCATGCTGAATGAAAACCAG+GGG - chr1_3:48512971-48512990 Msa0122170:intron 45.0%
GCCAACAATATATGATCCCC+TGG + chr1_3:48512990-48513009 None:intergenic 45.0%
! AGGGATCAAACATTTTGGGC+AGG - chr1_3:48513337-48513356 Msa0122170:CDS 45.0%
TACGGTAAGAAGCAAAGGTG+TGG + chr1_3:48513363-48513382 None:intergenic 45.0%
! GACTCGATACCTGCAGTTTT+TGG - chr1_3:48513501-48513520 Msa0122170:five_prime_UTR 45.0%
CGTGTTACACCAAAAACTGC+AGG + chr1_3:48513513-48513532 None:intergenic 45.0%
!!! TTAAAAATCATTTTTTTAAA+AGG - chr1_3:48507667-48507686 Msa0122170:intron 5.0%
!! AAAAAAATAAAAAAATTTAC+AGG + chr1_3:48507815-48507834 None:intergenic 5.0%
CTGGCGCAAAACCAAAAGAG+TGG - chr1_3:48506889-48506908 Msa0122170:CDS 50.0%
GTGAAGGAAGTGGAGTGTAG+AGG + chr1_3:48507063-48507082 None:intergenic 50.0%
AGATAGGACGGTGAAGGAAG+TGG + chr1_3:48507073-48507092 None:intergenic 50.0%
AGGAAGAGATAGGACGGTGA+AGG + chr1_3:48507079-48507098 None:intergenic 50.0%
AGGAGAGAGAGAGAGAGAGA+TGG + chr1_3:48507118-48507137 None:intergenic 50.0%
!! TAGAGCTGTAGCCTTATGGG+TGG - chr1_3:48508333-48508352 Msa0122170:intron 50.0%
!! AGAGCTGTAGCCTTATGGGT+GGG - chr1_3:48508334-48508353 Msa0122170:intron 50.0%
GGTGGGATGTGGAATGTGAT+TGG + chr1_3:48508784-48508803 None:intergenic 50.0%
GCCATATTCACAGGAGAAGC+AGG + chr1_3:48508903-48508922 None:intergenic 50.0%
TCTTGGAACAGCCACCATTC+AGG - chr1_3:48509406-48509425 Msa0122170:intron 50.0%
!! GCGATAGGACAAGCTTTAGG+TGG + chr1_3:48511539-48511558 None:intergenic 50.0%
AAGTGCTTGGATGGAGGCTA+TGG - chr1_3:48512147-48512166 Msa0122170:intron 50.0%
AGTGCTTGGATGGAGGCTAT+GGG - chr1_3:48512148-48512167 Msa0122170:intron 50.0%
ACTCAGTGGTTGTACCAAGG+GGG - chr1_3:48512796-48512815 Msa0122170:intron 50.0%
!! CCCCTGGTTTTCATTCAGCA+TGG + chr1_3:48512974-48512993 None:intergenic 50.0%
ATTCTACTAGGCATGTGCCG+TGG - chr1_3:48513015-48513034 Msa0122170:intron 50.0%
ACGGCTACGGTAAGAAGCAA+AGG + chr1_3:48513368-48513387 None:intergenic 50.0%
GTTTGCGCCGCAGTAGCATT+TGG - chr1_3:48508453-48508472 Msa0122170:intron 55.0%
!! GCCGCAGTAGCATTTGGTGT+TGG - chr1_3:48508459-48508478 Msa0122170:intron 55.0%
GCTACTTAGGGCTTGAGGCA+TGG - chr1_3:48509740-48509759 Msa0122170:intron 55.0%
TATGACCCGTGCGGCAGCAC+GGG + chr1_3:48509844-48509863 None:intergenic 65.0%
GTATGACCCGTGCGGCAGCA+CGG + chr1_3:48509845-48509864 None:intergenic 65.0%
CTTGCACCCGTGCTGCCGCA+CGG - chr1_3:48509835-48509854 Msa0122170:intron 70.0%
TTGCACCCGTGCTGCCGCAC+GGG - chr1_3:48509836-48509855 Msa0122170:intron 70.0%
CGTGCGGCAGCACGGGTGCA+AGG + chr1_3:48509837-48509856 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 48506863 48513575 48506863 ID=Msa0122170;Name=Msa0122170
chr1_3 mRNA 48506863 48513575 48506863 ID=Msa0122170-mRNA-1;Parent=Msa0122170;Name=Msa0122170-mRNA-1;_AED=0.14;_eAED=0.14;_QI=109|0.7|0.72|1|1|0.90|11|0|280
chr1_3 exon 48506863 48506940 48506863 ID=Msa0122170-mRNA-1:exon:14679;Parent=Msa0122170-mRNA-1
chr1_3 exon 48507023 48507079 48507023 ID=Msa0122170-mRNA-1:exon:14678;Parent=Msa0122170-mRNA-1
chr1_3 exon 48507273 48507322 48507273 ID=Msa0122170-mRNA-1:exon:14677;Parent=Msa0122170-mRNA-1
chr1_3 exon 48507886 48507967 48507886 ID=Msa0122170-mRNA-1:exon:14676;Parent=Msa0122170-mRNA-1
chr1_3 exon 48510847 48510903 48510847 ID=Msa0122170-mRNA-1:exon:14675;Parent=Msa0122170-mRNA-1
chr1_3 exon 48511011 48511091 48511011 ID=Msa0122170-mRNA-1:exon:14674;Parent=Msa0122170-mRNA-1
chr1_3 exon 48511233 48511320 48511233 ID=Msa0122170-mRNA-1:exon:14673;Parent=Msa0122170-mRNA-1
chr1_3 exon 48511909 48511985 48511909 ID=Msa0122170-mRNA-1:exon:14672;Parent=Msa0122170-mRNA-1
chr1_3 exon 48512087 48512148 48512087 ID=Msa0122170-mRNA-1:exon:14671;Parent=Msa0122170-mRNA-1
chr1_3 exon 48513164 48513235 48513164 ID=Msa0122170-mRNA-1:exon:14670;Parent=Msa0122170-mRNA-1
chr1_3 exon 48513331 48513575 48513331 ID=Msa0122170-mRNA-1:exon:14669;Parent=Msa0122170-mRNA-1
chr1_3 five_prime_UTR 48513467 48513575 48513467 ID=Msa0122170-mRNA-1:five_prime_utr;Parent=Msa0122170-mRNA-1
chr1_3 CDS 48513331 48513466 48513331 ID=Msa0122170-mRNA-1:cds;Parent=Msa0122170-mRNA-1
chr1_3 CDS 48513164 48513235 48513164 ID=Msa0122170-mRNA-1:cds;Parent=Msa0122170-mRNA-1
chr1_3 CDS 48512087 48512148 48512087 ID=Msa0122170-mRNA-1:cds;Parent=Msa0122170-mRNA-1
chr1_3 CDS 48511909 48511985 48511909 ID=Msa0122170-mRNA-1:cds;Parent=Msa0122170-mRNA-1
chr1_3 CDS 48511233 48511320 48511233 ID=Msa0122170-mRNA-1:cds;Parent=Msa0122170-mRNA-1
chr1_3 CDS 48511011 48511091 48511011 ID=Msa0122170-mRNA-1:cds;Parent=Msa0122170-mRNA-1
chr1_3 CDS 48510847 48510903 48510847 ID=Msa0122170-mRNA-1:cds;Parent=Msa0122170-mRNA-1
chr1_3 CDS 48507886 48507967 48507886 ID=Msa0122170-mRNA-1:cds;Parent=Msa0122170-mRNA-1
chr1_3 CDS 48507273 48507322 48507273 ID=Msa0122170-mRNA-1:cds;Parent=Msa0122170-mRNA-1
chr1_3 CDS 48507023 48507079 48507023 ID=Msa0122170-mRNA-1:cds;Parent=Msa0122170-mRNA-1
chr1_3 CDS 48506863 48506940 48506863 ID=Msa0122170-mRNA-1:cds;Parent=Msa0122170-mRNA-1
Gene Sequence

>Msa0122170

ATGAGTTTGGCTTCTGTTGTTCACAATGGCATCCAAACTCCATTGAATCATAATGCCCTTATCAGGATCAGGGTTTCAAATTCCAAAACCTCTACACTCCACTTCCTTCACCGTCCTATCTCTTCCTTTTCCTCAGTGGATCGTTCTCTCCGTCTTCCACTTGCATGTATCAAACAAATTCGTCAGCTTGATCGATTTCATTCTTCAGATGATGAGATATCTTCTACTGAGGAGTCACAGAGTTCTGCTATTAGAGCTGTAGCCTTATGGGTTTGCGCCGCAGTAGCATTTGGTGTTGGTGTGGGTTTTACAGAAGGTTATGAAAAGGCATCAGAATTCTTTGCTGGATACATATTGGAGCAAAGTCTCTCAGTGGATAATCTCTTTGTCTTTGTTCTAATATTCAAATACTTCAAAGTGCCAGTTTTGTATCAGAATCGTGTACTTTCCTATGGTATTGCTGGTGCAGTTGTTTTTCGCCTGATAATAATACTTCTTGGAACAGCCACCATTCAGAGGTTTGAGGCAGTCAACCTTCTATTGGCCGCAATATTGCTCTTCTCATCATTTAAGCTATTTGCTAGTGAAGAAGAAGAGTCAGACTTATCTGACAACTTTTTGGTGAAGACATGCCAGAAATTGATCCCTGTAACAACATATTATGATGGAAACAAGTTCATAACAAATCAGGATGGGATATGGATGGCCACACCTTTGCTTCTTACCGTAGCCGTTATTGAACTCAGTGACATTGCATTTGCAGTGGACTCGATACCTGCAGTTTTTGGTGTAACACGGGATCCATTTATAGTGTTTTCTTCTAATCTTTTTGCCATTCTG

Protein sequence

>Msa0122170

MSLASVVHNGIQTPLNHNALIRIRVSNSKTSTLHFLHRPISSFSSVDRSLRLPLACIKQIRQLDRFHSSDDEISSTEESQSSAIRAVALWVCAAVAFGVGVGFTEGYEKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVLYQNRVLSYGIAGAVVFRLIIILLGTATIQRFEAVNLLLAAILLFSSFKLFASEEEESDLSDNFLVKTCQKLIPVTTYYDGNKFITNQDGIWMATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAIL