AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0514630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0514630 MtrunA17_Chr3g0123081 96.930 228 6 1 1 228 1 227 8.23e-166 456
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0514630 AT1G67700.2 70.085 234 60 5 1 228 1 230 1.77e-112 322
Msa0514630 AT1G67700.5 70.085 234 60 5 1 228 1 230 1.77e-112 322
Msa0514630 AT1G67700.4 70.085 234 60 5 1 228 1 230 2.73e-112 321
Msa0514630 AT1G67700.1 70.085 234 60 5 1 228 1 230 2.73e-112 321
Msa0514630 AT1G67700.3 69.658 234 60 6 1 228 1 229 1.04e-109 315

Find 62 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGATGTTGGCGTTGAGTTC+TGG 0.117900 3_4:-65442358 None:intergenic
ATTACCGTCGTCTTCAATTT+TGG 0.126709 3_4:-65442469 None:intergenic
TATCCTCTTAGTATTGTTTC+TGG 0.147550 3_4:+65442537 Msa0514630:CDS
CGAATGAAGACGACGAATTT+AGG 0.163591 3_4:-65442492 None:intergenic
TCTTGGCAAATTTATTTATA+AGG 0.207596 3_4:+65442602 Msa0514630:CDS
TGTGCTAATACCAGGGTTAA+AGG 0.270565 3_4:+65444810 Msa0514630:intron
GCTTTGTGCTGTTTGTAAAT+TGG 0.299833 3_4:+65444903 Msa0514630:three_prime_UTR
GCTGTTTGTAAATTGGTTAA+TGG 0.314824 3_4:+65444910 Msa0514630:three_prime_UTR
GTATGGCTAATGTTTATCTT+TGG 0.328706 3_4:+65442514 Msa0514630:CDS
GGAGATGTAAAGGAGTCCTT+TGG 0.366310 3_4:+65444606 Msa0514630:CDS
TGGTACCACTGCTAAAATTA+TGG 0.385812 3_4:+65442560 Msa0514630:CDS
TGATGTTGGCGTTGAGTTCT+GGG 0.389647 3_4:-65442357 None:intergenic
ATGATAACTACCTCAGTAAC+TGG 0.390980 3_4:-65442192 None:intergenic
TTAAAGGATGAACTTATATC+AGG 0.402851 3_4:+65444826 Msa0514630:three_prime_UTR
GAGTGAGTCGTTGTGGAACC+TGG 0.423768 3_4:-65442313 None:intergenic
TGAGTTCTGGGGAATTGTCT+TGG 0.431127 3_4:-65442345 None:intergenic
TAAAATTATGTGTTGGGTGC+AGG 0.440944 3_4:-65444977 None:intergenic
GAGATGTAAAGGAGTCCTTT+GGG 0.442632 3_4:+65444607 Msa0514630:CDS
TGCAGGTATAAGAACAAAAC+AGG 0.451906 3_4:-65444960 None:intergenic
GAAATTATGTGTGATTATAA+AGG 0.452430 3_4:-65445021 None:intergenic
GATTATGAATTGCAGGAGAA+TGG 0.452904 3_4:+65443898 Msa0514630:intron
TCGGCTACTGAATTCAGATA+TGG 0.454393 3_4:+65443774 Msa0514630:CDS
TGATGCAACATATTTGATAG+AGG 0.456476 3_4:+65444710 Msa0514630:three_prime_UTR
TTCTACCAGTGATGTTATTG+AGG 0.459749 3_4:+65443939 Msa0514630:CDS
AGAACATAAAATTATGTGTT+GGG 0.463567 3_4:-65444983 None:intergenic
GTAGAGAGAGACTTCGATAA+AGG 0.472405 3_4:-65442164 None:intergenic
TTGAATCGTTAAGTGCTGTT+TGG 0.475884 3_4:+65444860 Msa0514630:three_prime_UTR
GTCTTAGTTGTTGAAGCAAA+GGG 0.481775 3_4:+65442393 Msa0514630:CDS
CACTATCAAGTTCAAGCTCC+AGG 0.504458 3_4:+65442295 Msa0514630:CDS
ATTCGTCGTCTTCATTCGTA+TGG 0.513591 3_4:+65442497 Msa0514630:CDS
TCTGGGGAATTGTCTTGGAA+TGG 0.516106 3_4:-65442340 None:intergenic
TGTCTTAGTTGTTGAAGCAA+AGG 0.518824 3_4:+65442392 Msa0514630:CDS
TCAGAAATGTCTTAAAGTAA+TGG 0.522609 3_4:-65445045 None:intergenic
CCTCTTAGTATTGTTTCTGG+TGG 0.528582 3_4:+65442540 Msa0514630:CDS
AAAGCTTTCTAAAGCTCATA+CGG 0.537225 3_4:-65444885 None:intergenic
CATGGTGGTGGTGGTGATGT+TGG 0.538747 3_4:-65442371 None:intergenic
CCACCAGAAACAATACTAAG+AGG 0.550315 3_4:-65442540 None:intergenic
AGAGAAAATCTCGAAACTCA+TGG 0.551850 3_4:+65442236 Msa0514630:exon
ATCTCGAAACTCATGGAAGT+AGG 0.553327 3_4:+65442243 Msa0514630:exon
TCAATTCAAATAGGATGAGA+AGG 0.553484 3_4:+65443710 Msa0514630:intron
CTGGAGCTTGAACTTGATAG+TGG 0.561983 3_4:-65442294 None:intergenic
ACTACCTCAGTAACTGGATA+GGG 0.565052 3_4:-65442186 None:intergenic
TGAATCTTCCTCTGACTCAT+CGG 0.568977 3_4:-65444655 None:intergenic
AACTACCTCAGTAACTGGAT+AGG 0.577225 3_4:-65442187 None:intergenic
TATCACCTCAATAACATCAC+TGG 0.580790 3_4:-65443944 None:intergenic
CAACTAAGACATGGTGGTGG+TGG 0.585757 3_4:-65442380 None:intergenic
TGGAGAAGAGTGAGTCGTTG+TGG 0.587691 3_4:-65442320 None:intergenic
TACTGCTACCGATGAGTCAG+AGG 0.607803 3_4:+65444647 Msa0514630:CDS
ACAACACCGTGTACTAAAGT+CGG 0.619103 3_4:+65443755 Msa0514630:CDS
TAACGATGTTATTTCCCCAA+AGG 0.619108 3_4:-65444622 None:intergenic
TTGCTTCAACAACTAAGACA+TGG 0.638845 3_4:-65442389 None:intergenic
CAGAACATAAAATTATGTGT+TGG 0.640342 3_4:-65444984 None:intergenic
GAGCTTGAACTTGATAGTGG+TGG 0.644572 3_4:-65442291 None:intergenic
ATTATGTGTGATTATAAAGG+CGG 0.648477 3_4:-65445018 None:intergenic
GATGTTGGCGTTGAGTTCTG+GGG 0.652469 3_4:-65442356 None:intergenic
CAGTAGCCGACTTTAGTACA+CGG 0.657329 3_4:-65443761 None:intergenic
TCTACCCTATCCAGTTACTG+AGG 0.688507 3_4:+65442182 Msa0514630:five_prime_UTR
TTACCCAAAATTGAAGACGA+CGG 0.694339 3_4:+65442465 Msa0514630:CDS
CAACAACTAAGACATGGTGG+TGG 0.695835 3_4:-65442383 None:intergenic
CTTCAACAACTAAGACATGG+TGG 0.698391 3_4:-65442386 None:intergenic
AGATGTAAAGGAGTCCTTTG+GGG 0.702608 3_4:+65444608 Msa0514630:CDS
AATGCAAGAATATTACAACT+CGG 0.706659 3_4:-65445084 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAATGAAAAAAAAGTTA+GGG - chr3_4:65442679-65442698 None:intergenic 10.0%
!! AAATTAATGAAAAAAAAGTT+AGG - chr3_4:65442680-65442699 None:intergenic 10.0%
!!! TTTAAATGTTCATAATTTTA+TGG + chr3_4:65443295-65443314 Msa0514630:intron 10.0%
!! AAATATATGTATAGAAATAT+AGG - chr3_4:65443821-65443840 None:intergenic 10.0%
!! ATTAATGAAAAAAAAGTTAG+GGG - chr3_4:65442678-65442697 None:intergenic 15.0%
!! AAAAAAAAAAAAAACCAGAA+TGG + chr3_4:65442726-65442745 Msa0514630:intron 15.0%
!! AAAAAAAAAAAAACCAGAAT+GGG + chr3_4:65442727-65442746 Msa0514630:intron 15.0%
!! TATGAACATTTAAAAAATCA+TGG - chr3_4:65443289-65443308 None:intergenic 15.0%
!! TAATAACTTTACAGAAATAA+TGG + chr3_4:65444100-65444119 Msa0514630:intron 15.0%
!! ATTTATGAAATATGATAGAT+AGG + chr3_4:65444173-65444192 Msa0514630:intron 15.0%
!!! TTTTATTGTTTGTTGTTTTA+TGG + chr3_4:65445183-65445202 Msa0514630:three_prime_UTR 15.0%
!!! TTTATTGTTTGTTGTTTTAT+GGG + chr3_4:65445184-65445203 Msa0514630:three_prime_UTR 15.0%
!! TCTTGGCAAATTTATTTATA+AGG + chr3_4:65442602-65442621 Msa0514630:CDS 20.0%
!! AAAAAAAAAAAACCAGAATG+GGG + chr3_4:65442728-65442747 Msa0514630:intron 20.0%
!! TAGTAAGTGGTTAAAATATA+AGG - chr3_4:65443177-65443196 None:intergenic 20.0%
!! GTCCATAAAATTACTTTATA+GGG - chr3_4:65443334-65443353 None:intergenic 20.0%
!! ACAAATAAAAGTTCAGTTTA+AGG - chr3_4:65443977-65443996 None:intergenic 20.0%
!!! TAGAGATATTTTTGTTATGA+TGG - chr3_4:65444355-65444374 None:intergenic 20.0%
!!! ATGCTTTCTTTTTAGTTATA+AGG + chr3_4:65444447-65444466 Msa0514630:intron 20.0%
!! AGAACATAAAATTATGTGTT+GGG - chr3_4:65444986-65445005 None:intergenic 20.0%
!! GAAATTATGTGTGATTATAA+AGG - chr3_4:65445024-65445043 None:intergenic 20.0%
! AAAACTTAAACTCTAATGTC+CGG - chr3_4:65442890-65442909 None:intergenic 25.0%
!! TTTACCTTCAGGATAATTTT+AGG + chr3_4:65442983-65443002 Msa0514630:intron 25.0%
! AAAGTTAAGGACTAATATAG+GGG - chr3_4:65443044-65443063 None:intergenic 25.0%
! CAAAGTTAAGGACTAATATA+GGG - chr3_4:65443045-65443064 None:intergenic 25.0%
! ACAAAGTTAAGGACTAATAT+AGG - chr3_4:65443046-65443065 None:intergenic 25.0%
! ATATTAGTCCTTAACTTTGT+AGG + chr3_4:65443046-65443065 Msa0514630:intron 25.0%
! TATTAGTCCTTAACTTTGTA+GGG + chr3_4:65443047-65443066 Msa0514630:intron 25.0%
! ACTCTATTAAACTTTCAAAC+TGG + chr3_4:65443118-65443137 Msa0514630:intron 25.0%
! ATAGCAATCACTTAAATACA+TGG - chr3_4:65443145-65443164 None:intergenic 25.0%
! TTAAGTGATTGCTATCAATT+AGG + chr3_4:65443150-65443169 Msa0514630:intron 25.0%
!! AAGATCAAATTGATAGTAAG+TGG - chr3_4:65443190-65443209 None:intergenic 25.0%
!! AGCCCTATAAAGTAATTTTA+TGG + chr3_4:65443329-65443348 Msa0514630:intron 25.0%
! GGTCCATAAAATTACTTTAT+AGG - chr3_4:65443335-65443354 None:intergenic 25.0%
! ATAGACAACGGATAAAATTT+CGG + chr3_4:65443503-65443522 Msa0514630:intron 25.0%
!! TTTTTCTTGGTTATGTATGT+TGG + chr3_4:65443660-65443679 Msa0514630:intron 25.0%
!!! TTTTTCAGATTATGAATTGC+AGG + chr3_4:65443891-65443910 Msa0514630:intron 25.0%
! TATTTAAAGACAATACTCCA+AGG + chr3_4:65444270-65444289 Msa0514630:intron 25.0%
!!! CTATTTAAAGACTTGCTAAT+AGG + chr3_4:65444293-65444312 Msa0514630:intron 25.0%
!!! TTTTGTTATGATGGTTGTTT+AGG - chr3_4:65444346-65444365 None:intergenic 25.0%
!!! GGTTCTTTTTCATAATATTG+AGG + chr3_4:65444468-65444487 Msa0514630:intron 25.0%
!! GATAAAGTGAAAGACTTTTT+CGG + chr3_4:65444585-65444604 Msa0514630:CDS 25.0%
! ATGAACGTTATTCAATTACA+TGG + chr3_4:65444747-65444766 Msa0514630:intron 25.0%
! TTAAAGGATGAACTTATATC+AGG + chr3_4:65444826-65444845 Msa0514630:three_prime_UTR 25.0%
! CAGAACATAAAATTATGTGT+TGG - chr3_4:65444987-65445006 None:intergenic 25.0%
!! CAACACATAATTTTATGTTC+TGG + chr3_4:65444985-65445004 Msa0514630:three_prime_UTR 25.0%
! ATTATGTGTGATTATAAAGG+CGG - chr3_4:65445021-65445040 None:intergenic 25.0%
! TCAGAAATGTCTTAAAGTAA+TGG - chr3_4:65445048-65445067 None:intergenic 25.0%
! AATGCAAGAATATTACAACT+CGG - chr3_4:65445087-65445106 None:intergenic 25.0%
!!! ATTCTTGCATTTTATTTCAC+AGG + chr3_4:65445096-65445115 Msa0514630:three_prime_UTR 25.0%
GTATGGCTAATGTTTATCTT+TGG + chr3_4:65442514-65442533 Msa0514630:CDS 30.0%
TATCCTCTTAGTATTGTTTC+TGG + chr3_4:65442537-65442556 Msa0514630:CDS 30.0%
! GCTGCTAAAGATAATTTTCT+TGG + chr3_4:65442585-65442604 Msa0514630:CDS 30.0%
TTAGGGGAAAAAATCTTACT+CGG - chr3_4:65442662-65442681 None:intergenic 30.0%
ACACAAATAATCAGCAACAA+CGG - chr3_4:65442820-65442839 None:intergenic 30.0%
GATATATTCTAACTTGAAGC+CGG + chr3_4:65442868-65442887 Msa0514630:intron 30.0%
AAGGTAAAGTCATTCATGTT+TGG - chr3_4:65442971-65442990 None:intergenic 30.0%
AAGTTAAGGACTAATATAGG+GGG - chr3_4:65443043-65443062 None:intergenic 30.0%
! TTTGAGATATTCACAATCTC+AGG - chr3_4:65443088-65443107 None:intergenic 30.0%
GGGACTAAATTCATAATAAG+CGG - chr3_4:65443222-65443241 None:intergenic 30.0%
TCACATTGATGTTAGTCAAA+TGG - chr3_4:65443403-65443422 None:intergenic 30.0%
GAACTACGTGTATGAAAATA+CGG + chr3_4:65443443-65443462 Msa0514630:intron 30.0%
TGTGTGACCAACAATAATTA+TGG + chr3_4:65443466-65443485 Msa0514630:intron 30.0%
TCTCTTGCCATAATTATTGT+TGG - chr3_4:65443476-65443495 None:intergenic 30.0%
! AGAGACTTTTTGATAGACAA+CGG + chr3_4:65443491-65443510 Msa0514630:intron 30.0%
! TGAGCTCTTTTTAACCATTA+TGG + chr3_4:65443599-65443618 Msa0514630:intron 30.0%
AGAAATTAGAGTCTCCATAA+TGG - chr3_4:65443616-65443635 None:intergenic 30.0%
!!! ATGATGAGCATGTTTTTTCT+TGG + chr3_4:65443647-65443666 Msa0514630:intron 30.0%
TCAATTCAAATAGGATGAGA+AGG + chr3_4:65443710-65443729 Msa0514630:intron 30.0%
TCACTGAATTCATCTTCAAT+TGG - chr3_4:65443849-65443868 None:intergenic 30.0%
TTTAAACCTTATACCGCATT+AGG + chr3_4:65444015-65444034 Msa0514630:intron 30.0%
TTAAACCTTATACCGCATTA+GGG + chr3_4:65444016-65444035 Msa0514630:intron 30.0%
! AATAATGGAAACTGTCTGTT+AGG + chr3_4:65444115-65444134 Msa0514630:intron 30.0%
TTTCTATTCCATTCAATTCC+CGG - chr3_4:65444144-65444163 None:intergenic 30.0%
!! AGAGTATTGTCTATTGTGAA+GGG - chr3_4:65444225-65444244 None:intergenic 30.0%
!! TAGAGTATTGTCTATTGTGA+AGG - chr3_4:65444226-65444245 None:intergenic 30.0%
!!! GTTTTTAGTTTATCTGGTGT+AGG - chr3_4:65444558-65444577 None:intergenic 30.0%
!!! GCTACAGTTTTTAGTTTATC+TGG - chr3_4:65444564-65444583 None:intergenic 30.0%
TGATGCAACATATTTGATAG+AGG + chr3_4:65444710-65444729 Msa0514630:three_prime_UTR 30.0%
ACGTTATTCAATTACATGGT+AGG + chr3_4:65444751-65444770 Msa0514630:intron 30.0%
!!! ATTGTTTTTGTGCTAATACC+AGG + chr3_4:65444802-65444821 Msa0514630:intron 30.0%
!!! TTGTTTTTGTGCTAATACCA+GGG + chr3_4:65444803-65444822 Msa0514630:intron 30.0%
!! AAAGCTTTCTAAAGCTCATA+CGG - chr3_4:65444888-65444907 None:intergenic 30.0%
GCTGTTTGTAAATTGGTTAA+TGG + chr3_4:65444910-65444929 Msa0514630:three_prime_UTR 30.0%
ATGATAACTACCTCAGTAAC+TGG - chr3_4:65442195-65442214 None:intergenic 35.0%
AGAGAAAATCTCGAAACTCA+TGG + chr3_4:65442236-65442255 Msa0514630:exon 35.0%
TTGCTTCAACAACTAAGACA+TGG - chr3_4:65442392-65442411 None:intergenic 35.0%
TGTCTTAGTTGTTGAAGCAA+AGG + chr3_4:65442392-65442411 Msa0514630:CDS 35.0%
GTCTTAGTTGTTGAAGCAAA+GGG + chr3_4:65442393-65442412 Msa0514630:CDS 35.0%
GTTGAAGCAAAGGGTAAAAA+AGG + chr3_4:65442402-65442421 Msa0514630:CDS 35.0%
!! TCTTCAATTTTGGGTAAAGG+AGG - chr3_4:65442462-65442481 None:intergenic 35.0%
!! TCGTCTTCAATTTTGGGTAA+AGG - chr3_4:65442465-65442484 None:intergenic 35.0%
TTACCCAAAATTGAAGACGA+CGG + chr3_4:65442465-65442484 Msa0514630:CDS 35.0%
! TTACCGTCGTCTTCAATTTT+GGG - chr3_4:65442471-65442490 None:intergenic 35.0%
! ATTACCGTCGTCTTCAATTT+TGG - chr3_4:65442472-65442491 None:intergenic 35.0%
TGGTACCACTGCTAAAATTA+TGG + chr3_4:65442560-65442579 Msa0514630:CDS 35.0%
!! AGCAACCATAATTTTAGCAG+TGG - chr3_4:65442568-65442587 None:intergenic 35.0%
CACAAATAATCAGCAACAAC+GGG - chr3_4:65442819-65442838 None:intergenic 35.0%
ACATGAATGACTTTACCTTC+AGG + chr3_4:65442972-65442991 Msa0514630:intron 35.0%
! ACCTTCAGGATAATTTTAGG+CGG + chr3_4:65442986-65443005 Msa0514630:intron 35.0%
ACTTTATAGGGCTCTCAAAT+AGG - chr3_4:65443322-65443341 None:intergenic 35.0%
ACTTTATAGGGCTCTCAAAT+AGG - chr3_4:65443322-65443341 None:intergenic 35.0%
AATTCGTCCCTGACTTTATA+GGG - chr3_4:65443368-65443387 None:intergenic 35.0%
AAATTCGTCCCTGACTTTAT+AGG - chr3_4:65443369-65443388 None:intergenic 35.0%
CTGCTTGCTTCAATTCAAAT+AGG + chr3_4:65443701-65443720 Msa0514630:intron 35.0%
GATTATGAATTGCAGGAGAA+TGG + chr3_4:65443898-65443917 Msa0514630:intron 35.0%
TTCTACCAGTGATGTTATTG+AGG + chr3_4:65443939-65443958 Msa0514630:CDS 35.0%
TATCACCTCAATAACATCAC+TGG - chr3_4:65443947-65443966 None:intergenic 35.0%
GAACATATATGTCCCTAATG+CGG - chr3_4:65444031-65444050 None:intergenic 35.0%
AAAAGTTACATGAACGACCA+GGG - chr3_4:65444075-65444094 None:intergenic 35.0%
TTCTATTCCATTCAATTCCC+GGG - chr3_4:65444143-65444162 None:intergenic 35.0%
! GAGTATTGTCTATTGTGAAG+GGG - chr3_4:65444224-65444243 None:intergenic 35.0%
AGCAAGTCTTTAAATAGCCT+TGG - chr3_4:65444290-65444309 None:intergenic 35.0%
!! TAGGTGGTTAGTTTGTTATG+TGG - chr3_4:65444327-65444346 None:intergenic 35.0%
TGTTATGATGGTTGTTTAGG+TGG - chr3_4:65444343-65444362 None:intergenic 35.0%
!!! AGACTTTTTCGGAGATGTAA+AGG + chr3_4:65444596-65444615 Msa0514630:CDS 35.0%
!! TAACGATGTTATTTCCCCAA+AGG - chr3_4:65444625-65444644 None:intergenic 35.0%
ATAAGTTCATCCTTTAACCC+TGG - chr3_4:65444823-65444842 None:intergenic 35.0%
! TTGAATCGTTAAGTGCTGTT+TGG + chr3_4:65444860-65444879 Msa0514630:three_prime_UTR 35.0%
!! GCTTTGTGCTGTTTGTAAAT+TGG + chr3_4:65444903-65444922 Msa0514630:three_prime_UTR 35.0%
TGCAGGTATAAGAACAAAAC+AGG - chr3_4:65444963-65444982 None:intergenic 35.0%
TAAAATTATGTGTTGGGTGC+AGG - chr3_4:65444980-65444999 None:intergenic 35.0%
GTAGAGAGAGACTTCGATAA+AGG - chr3_4:65442167-65442186 None:intergenic 40.0%
ACTACCTCAGTAACTGGATA+GGG - chr3_4:65442189-65442208 None:intergenic 40.0%
AACTACCTCAGTAACTGGAT+AGG - chr3_4:65442190-65442209 None:intergenic 40.0%
ATCTCGAAACTCATGGAAGT+AGG + chr3_4:65442243-65442262 Msa0514630:exon 40.0%
CTTCAACAACTAAGACATGG+TGG - chr3_4:65442389-65442408 None:intergenic 40.0%
!! TCAATTTTGGGTAAAGGAGG+AGG - chr3_4:65442459-65442478 None:intergenic 40.0%
CGAATGAAGACGACGAATTT+AGG - chr3_4:65442495-65442514 None:intergenic 40.0%
ATTCGTCGTCTTCATTCGTA+TGG + chr3_4:65442497-65442516 Msa0514630:CDS 40.0%
CCACCAGAAACAATACTAAG+AGG - chr3_4:65442543-65442562 None:intergenic 40.0%
!! CCTCTTAGTATTGTTTCTGG+TGG + chr3_4:65442540-65442559 Msa0514630:CDS 40.0%
AGTGGTATGATTCTCGCTTA+GGG - chr3_4:65442786-65442805 None:intergenic 40.0%
TAGTGGTATGATTCTCGCTT+AGG - chr3_4:65442787-65442806 None:intergenic 40.0%
TCCGCCTAAAATTATCCTGA+AGG - chr3_4:65442990-65443009 None:intergenic 40.0%
! TTTGTAGGGTGCTCTCAAAT+AGG + chr3_4:65443061-65443080 Msa0514630:intron 40.0%
TTTGAGAGCCCTATAAAGTC+AGG + chr3_4:65443357-65443376 Msa0514630:intron 40.0%
TTGAGAGCCCTATAAAGTCA+GGG + chr3_4:65443358-65443377 Msa0514630:intron 40.0%
AAAGTCAGGGACGAATTTGA+TGG + chr3_4:65443371-65443390 Msa0514630:intron 40.0%
TGACTAACATCAATGTGACG+TGG + chr3_4:65443405-65443424 Msa0514630:intron 40.0%
AAGCAGTGAGTAACAAAGAC+AGG - chr3_4:65443687-65443706 None:intergenic 40.0%
ACAACACCGTGTACTAAAGT+CGG + chr3_4:65443755-65443774 Msa0514630:CDS 40.0%
TCGGCTACTGAATTCAGATA+TGG + chr3_4:65443774-65443793 Msa0514630:CDS 40.0%
TATGTCCCTAATGCGGTATA+AGG - chr3_4:65444024-65444043 None:intergenic 40.0%
AGTACAACATAGAAGAACCC+TGG + chr3_4:65444055-65444074 Msa0514630:intron 40.0%
GAAAAGTTACATGAACGACC+AGG - chr3_4:65444076-65444095 None:intergenic 40.0%
GAGATGTAAAGGAGTCCTTT+GGG + chr3_4:65444607-65444626 Msa0514630:CDS 40.0%
AGATGTAAAGGAGTCCTTTG+GGG + chr3_4:65444608-65444627 Msa0514630:CDS 40.0%
TGAATCTTCCTCTGACTCAT+CGG - chr3_4:65444658-65444677 None:intergenic 40.0%
TGTGCTAATACCAGGGTTAA+AGG + chr3_4:65444810-65444829 Msa0514630:intron 40.0%
! GATACTTTTCAGAGAGAGAG+AGG + chr3_4:65445160-65445179 Msa0514630:three_prime_UTR 40.0%
TCTACCCTATCCAGTTACTG+AGG + chr3_4:65442182-65442201 Msa0514630:five_prime_UTR 45.0%
!! GAGCTTGAACTTGATAGTGG+TGG - chr3_4:65442294-65442313 None:intergenic 45.0%
CTGGAGCTTGAACTTGATAG+TGG - chr3_4:65442297-65442316 None:intergenic 45.0%
CACTATCAAGTTCAAGCTCC+AGG + chr3_4:65442295-65442314 Msa0514630:CDS 45.0%
TCTGGGGAATTGTCTTGGAA+TGG - chr3_4:65442343-65442362 None:intergenic 45.0%
!! TGAGTTCTGGGGAATTGTCT+TGG - chr3_4:65442348-65442367 None:intergenic 45.0%
! TGATGTTGGCGTTGAGTTCT+GGG - chr3_4:65442360-65442379 None:intergenic 45.0%
CAACAACTAAGACATGGTGG+TGG - chr3_4:65442386-65442405 None:intergenic 45.0%
!! ATTTTGGGTAAAGGAGGAGG+AGG - chr3_4:65442456-65442475 None:intergenic 45.0%
GGCATTCCGAGAATTGAACT+CGG + chr3_4:65442749-65442768 Msa0514630:intron 45.0%
GCATTCCGAGAATTGAACTC+GGG + chr3_4:65442750-65442769 Msa0514630:intron 45.0%
AATCAGCAACAACGGGCATT+TGG - chr3_4:65442812-65442831 None:intergenic 45.0%
!! GAGAGCACCCTACAAAGTTA+AGG - chr3_4:65443057-65443076 None:intergenic 45.0%
AGTGCTTCACAGAGTCAAGA+GGG - chr3_4:65443242-65443261 None:intergenic 45.0%
TAGTGCTTCACAGAGTCAAG+AGG - chr3_4:65443243-65443262 None:intergenic 45.0%
! CAGTAGCCGACTTTAGTACA+CGG - chr3_4:65443764-65443783 None:intergenic 45.0%
GAAACTGTCTGTTAGGAACC+CGG + chr3_4:65444122-65444141 Msa0514630:intron 45.0%
AAACTGTCTGTTAGGAACCC+GGG + chr3_4:65444123-65444142 Msa0514630:intron 45.0%
TTAGGAACCCGGGAATTGAA+TGG + chr3_4:65444133-65444152 Msa0514630:intron 45.0%
ATTGTGAAGGGGAAAACCCT+TGG - chr3_4:65444213-65444232 None:intergenic 45.0%
GGAGATGTAAAGGAGTCCTT+TGG + chr3_4:65444606-65444625 Msa0514630:CDS 45.0%
!!! TAATATTTTTAAATTTCTAA+TGG + chr3_4:65444774-65444793 Msa0514630:intron 5.0%
TGGAGAAGAGTGAGTCGTTG+TGG - chr3_4:65442323-65442342 None:intergenic 50.0%
! GATGTTGGCGTTGAGTTCTG+GGG - chr3_4:65442359-65442378 None:intergenic 50.0%
! GTGATGTTGGCGTTGAGTTC+TGG - chr3_4:65442361-65442380 None:intergenic 50.0%
!! CAACTAAGACATGGTGGTGG+TGG - chr3_4:65442383-65442402 None:intergenic 50.0%
ATTCTCGGAATGCCCCATTC+TGG - chr3_4:65442743-65442762 None:intergenic 50.0%
GAGGTCCCGAGTTCAATTCT+CGG - chr3_4:65442758-65442777 None:intergenic 50.0%
ACAACGGGCATTTGGTCTAG+TGG - chr3_4:65442804-65442823 None:intergenic 50.0%
AGGAGAGAATCTCCACTCCA+AGG + chr3_4:65444193-65444212 Msa0514630:intron 50.0%
GGAGAGAATCTCCACTCCAA+GGG + chr3_4:65444194-65444213 Msa0514630:intron 50.0%
TGGTGTAGGAAGCTGCAAGT+TGG - chr3_4:65444544-65444563 None:intergenic 50.0%
TACTGCTACCGATGAGTCAG+AGG + chr3_4:65444647-65444666 Msa0514630:CDS 50.0%
GAGTGAGTCGTTGTGGAACC+TGG - chr3_4:65442316-65442335 None:intergenic 55.0%
!! CATGGTGGTGGTGGTGATGT+TGG - chr3_4:65442374-65442393 None:intergenic 55.0%
ATTCTCGCTTAGGGTGCGAG+AGG - chr3_4:65442777-65442796 None:intergenic 55.0%
GAAGGGGAAAACCCTTGGAG+TGG - chr3_4:65444208-65444227 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 65442139 65445290 65442139 ID=Msa0514630;Name=Msa0514630
chr3_4 mRNA 65442139 65445290 65442139 ID=Msa0514630-mRNA-1;Parent=Msa0514630;Name=Msa0514630-mRNA-1;_AED=0.04;_eAED=0.04;_QI=116|1|1|1|0.75|0.6|5|503|228
chr3_4 exon 65442139 65442662 65442139 ID=Msa0514630-mRNA-1:exon:16681;Parent=Msa0514630-mRNA-1
chr3_4 exon 65443723 65443809 65443723 ID=Msa0514630-mRNA-1:exon:16682;Parent=Msa0514630-mRNA-1
chr3_4 exon 65443913 65443960 65443913 ID=Msa0514630-mRNA-1:exon:16683;Parent=Msa0514630-mRNA-1
chr3_4 exon 65444552 65444731 65444552 ID=Msa0514630-mRNA-1:exon:16684;Parent=Msa0514630-mRNA-1
chr3_4 exon 65444824 65445290 65444824 ID=Msa0514630-mRNA-1:exon:16685;Parent=Msa0514630-mRNA-1
chr3_4 five_prime_UTR 65442139 65442254 65442139 ID=Msa0514630-mRNA-1:five_prime_utr;Parent=Msa0514630-mRNA-1
chr3_4 CDS 65442255 65442662 65442255 ID=Msa0514630-mRNA-1:cds;Parent=Msa0514630-mRNA-1
chr3_4 CDS 65443723 65443809 65443723 ID=Msa0514630-mRNA-1:cds;Parent=Msa0514630-mRNA-1
chr3_4 CDS 65443913 65443960 65443913 ID=Msa0514630-mRNA-1:cds;Parent=Msa0514630-mRNA-1
chr3_4 CDS 65444552 65444695 65444552 ID=Msa0514630-mRNA-1:cds;Parent=Msa0514630-mRNA-1
chr3_4 three_prime_UTR 65444696 65444731 65444696 ID=Msa0514630-mRNA-1:three_prime_utr;Parent=Msa0514630-mRNA-1
chr3_4 three_prime_UTR 65444824 65445290 65444824 ID=Msa0514630-mRNA-1:three_prime_utr;Parent=Msa0514630-mRNA-1
Gene Sequence

>Msa0514630

ATGGAAGTAGGAATGTCGTTGAACGCACTGATTCATCCACCACTATCAAGTTCAAGCTCCAGGTTCCACAACGACTCACTCTTCTCCATTCCAAGACAATTCCCCAGAACTCAACGCCAACATCACCACCACCACCATGTCTTAGTTGTTGAAGCAAAGGGTAAAAAAGGAATGATGTCTCGTCAATATCAACGTCAACCTCCTCCTCCTTTACCCAAAATTGAAGACGACGGTAATCCTAAATTCGTCGTCTTCATTCGTATGGCTAATGTTTATCTTTGGTATCCTCTTAGTATTGTTTCTGGTGGTACCACTGCTAAAATTATGGTTGCTGCTAAAGATAATTTTCTTGGCAAATTTATTTATAAGGATACTCTTGATCGAAATCTTGCTGCTGTTATCTACCGAGATGAGAAGGAGATACAGAAATCTGCATTCAAACAACACCGTGTACTAAAGTCGGCTACTGAATTCAGATATGGCTACAAACTTGTTGAGAATGGCAATGTAAAAGCTGCACTTTCTACCAGTGATGTTATTGAGCTTCCTACACCAGATAAACTAAAAACTGTAGCTGATAAAGTGAAAGACTTTTTCGGAGATGTAAAGGAGTCCTTTGGGGAAATAACATCGTTAGTTACTGCTACCGATGAGTCAGAGGAAGATTCAAAAGAAAAAACTAAGTGA

Protein sequence

>Msa0514630

MEVGMSLNALIHPPLSSSSSRFHNDSLFSIPRQFPRTQRQHHHHHHVLVVEAKGKKGMMSRQYQRQPPPPLPKIEDDGNPKFVVFIRMANVYLWYPLSIVSGGTTAKIMVAAKDNFLGKFIYKDTLDRNLAAVIYRDEKEIQKSAFKQHRVLKSATEFRYGYKLVENGNVKAALSTSDVIELPTPDKLKTVADKVKDFFGDVKESFGEITSLVTATDESEEDSKEKTK*