AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0322480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0322480 MtrunA17_Chr2g0299721 88.722 532 12 3 1 485 1 531 0.0 957
Msa0322480 MtrunA17_Chr7g0256421 35.338 399 196 10 120 466 94 482 1.85e-67 224
Msa0322480 MtrunA17_Chr2g0321641 35.280 411 202 10 111 466 81 482 1.80e-64 216
Msa0322480 MtrunA17_Chr2g0321661 33.824 408 206 11 111 467 77 471 2.68e-60 205
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0322480 AT5G57030.1 66.417 533 122 5 1 485 1 524 0.0 696
Msa0322480 AT3G10230.1 32.960 446 234 9 73 466 50 482 4.46e-67 224
Msa0322480 AT3G10230.2 31.844 358 186 7 159 466 1 350 1.03e-49 174

Find 117 sgRNAs with CRISPR-Local

Find 406 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGACATTCTTAAGTTATT+TGG 0.177728 2_4:-25114727 None:intergenic
GCAAGGGACATTATTACTTA+TGG 0.259775 2_4:+25113583 Msa0322480:CDS
ATTTCAATTGGACGTTCTTA+TGG 0.286620 2_4:+25111525 Msa0322480:CDS
GGAACCTTAATAGAGTTTAT+AGG 0.296541 2_4:+25114880 Msa0322480:three_prime_UTR
TCTTGTTAGGTACCCTGTAT+TGG 0.297570 2_4:+25114836 Msa0322480:three_prime_UTR
GTACTAGATCTAGTCGTTAT+TGG 0.302963 2_4:+25110929 Msa0322480:CDS
GGATTAAAAGTTGGACTTAT+TGG 0.306867 2_4:+25110998 Msa0322480:CDS
CTTGTTAGGTACCCTGTATT+GGG 0.312888 2_4:+25114837 Msa0322480:three_prime_UTR
GTGTGTGTACAAACAGCTTA+TGG 0.314256 2_4:+25112020 Msa0322480:CDS
TAAGAAGAAAGAAGATTTGT+TGG 0.319851 2_4:+25108223 Msa0322480:CDS
GTTGCATCAGGAGCAGCTTC+AGG 0.332490 2_4:+25111963 Msa0322480:CDS
ATAACCTATAAACTCTATTA+AGG 0.336233 2_4:-25114884 None:intergenic
GCAATCTAAGCTTGCGGATA+AGG 0.338114 2_4:+25108437 Msa0322480:CDS
CTTGCTCTAGCTGCTGAATC+TGG 0.361407 2_4:+25110968 Msa0322480:CDS
GTGTGGGAGGACGAATTTAA+AGG 0.371750 2_4:+25111052 Msa0322480:CDS
CAGTTGCCACCTATCTCTAT+TGG 0.372211 2_4:+25110899 Msa0322480:intron
AGGTTCTTCTGTTCTGTGTT+TGG 0.372287 2_4:-25113363 None:intergenic
GCTGCTGAATCTGGCAAGTT+AGG 0.372390 2_4:+25110977 Msa0322480:CDS
AGGATGTGGCAAGGATTTCT+TGG 0.374365 2_4:+25114646 Msa0322480:intron
ATTTGATTACCTCGCATTGA+TGG 0.374576 2_4:-25113622 None:intergenic
AACTATTGCAGTATGAGGTT+GGG 0.384949 2_4:+25111988 Msa0322480:CDS
CTCCCTTTCACAAACAACTA+TGG 0.400540 2_4:+25111028 Msa0322480:CDS
TCTAGCCTGTCTCCCAATAC+AGG 0.402133 2_4:-25114849 None:intergenic
GCTGTTTGTACACACACCTT+TGG 0.403522 2_4:-25112014 None:intergenic
GAGACAGGCTAGATTACATT+AGG 0.406678 2_4:+25114859 Msa0322480:three_prime_UTR
TTTGGTAAGGATCCACCAAC+TGG 0.407219 2_4:-25113345 None:intergenic
CTCTGTTGTGAGATCGTTGT+CGG 0.407519 2_4:+25113510 Msa0322480:CDS
ATAAGAACGTCCAATTGAAA+TGG 0.408850 2_4:-25111523 None:intergenic
AAGGTTGTATTGAGCATGTT+TGG 0.411470 2_4:+25111466 Msa0322480:CDS
ATTTCAGGTCTTGGACTTGA+AGG 0.411475 2_4:+25111447 Msa0322480:intron
CTTCTGTTCTGTGTTTGGTA+AGG 0.411856 2_4:-25113358 None:intergenic
GAGTCAGGTGTCTCGTATCT+TGG 0.416251 2_4:+25111708 Msa0322480:CDS
TTCCCTAGGTGTGTCGAGTC+AGG 0.420699 2_4:+25111693 Msa0322480:intron
TCCATGAAAACCATCACGTT+TGG 0.421212 2_4:-25112442 None:intergenic
ACCATCACGTTTGGATCATA+AGG 0.427701 2_4:-25112433 None:intergenic
GATCTAGTCGTTATTGGTTG+TGG 0.430410 2_4:+25110935 Msa0322480:CDS
TTTGCATAAGTCCTTCTTTG+CGG 0.434401 2_4:+25108199 Msa0322480:CDS
AAACTATTGCAGTATGAGGT+TGG 0.434728 2_4:+25111987 Msa0322480:CDS
TTTCGTCGAACGCAGCAATT+CGG 0.440092 2_4:+25108259 Msa0322480:CDS
CTCTGTCGTTTCCTTTCTTG+TGG 0.445396 2_4:-25113895 None:intergenic
GAACAGAAGAACCTTGCATT+TGG 0.452985 2_4:+25113372 Msa0322480:CDS
ACTCCATCTCCAATAGAGAT+AGG 0.454988 2_4:-25110908 None:intergenic
ATTAGCACTAATTGTTCAGC+TGG 0.466025 2_4:+25113936 Msa0322480:CDS
AGGCTTGCTACTGTTGCATC+AGG 0.467316 2_4:+25111951 Msa0322480:intron
AATGCGAAAGCAGGAGGTGC+AGG 0.467611 2_4:+25108300 Msa0322480:CDS
GGCATTGCATAAAGAAATGT+TGG 0.467739 2_4:-25112514 None:intergenic
CACCATAGTTGTTTGTGAAA+GGG 0.468395 2_4:-25111030 None:intergenic
TTCACGAAGAATTGTTAAGA+AGG 0.473016 2_4:+25111568 Msa0322480:CDS
TTGCATCAGGAGCAGCTTCA+GGG 0.474105 2_4:+25111964 Msa0322480:CDS
TATTACTTATGGAAGAAGTA+AGG 0.477112 2_4:+25113594 Msa0322480:CDS
AGGGAAACTATTGCAGTATG+AGG 0.481433 2_4:+25111983 Msa0322480:CDS
GTTATTGGTTGTGGTCCTGC+TGG 0.481480 2_4:+25110944 Msa0322480:CDS
TGTGTGTACAAACAGCTTAT+GGG 0.482524 2_4:+25112021 Msa0322480:CDS
GCAGCTAGAGCAAGACCAGC+AGG 0.483198 2_4:-25110959 None:intergenic
TAAGAACGTCCAATTGAAAT+GGG 0.484995 2_4:-25111522 None:intergenic
TCATACAAAAGTGTTCTTTG+AGG 0.486804 2_4:+25112543 Msa0322480:CDS
TTTCAGCTTGGAATACACTT+TGG 0.490728 2_4:+25113872 Msa0322480:intron
TTTCTTCTTAACCGCAAAGA+AGG 0.493045 2_4:-25108210 None:intergenic
ACTATTGCAGTATGAGGTTG+GGG 0.493808 2_4:+25111989 Msa0322480:CDS
ATTGTTCAGCTGGACATTGA+AGG 0.495105 2_4:+25113946 Msa0322480:CDS
AAAAGTTGGACTTATTGGTC+CGG 0.495439 2_4:+25111003 Msa0322480:CDS
CGTTGGAGCGAGAAACTTAA+CGG 0.502128 2_4:+25108167 Msa0322480:CDS
CATCTGCTTTCAGATCCTAC+AGG 0.507194 2_4:+25114757 Msa0322480:CDS
GGTACCCTGTATTGGGAGAC+AGG 0.508224 2_4:+25114844 Msa0322480:three_prime_UTR
GGCAAGTTAGGATTAAAAGT+TGG 0.508773 2_4:+25110989 Msa0322480:CDS
AGCTTATGGGGTGGAAGTTG+AGG 0.509754 2_4:+25112034 Msa0322480:CDS
ATGATACTGTAGTGCCCTGC+AGG 0.512630 2_4:+25111790 Msa0322480:CDS
GAGTTGTGTCGTTGCTAAAG+AGG 0.515075 2_4:+25108329 Msa0322480:CDS
TTGTTTGTGAAAGGGAGATC+CGG 0.515364 2_4:-25111022 None:intergenic
ATACACTTTGGCCACAAGAA+AGG 0.516208 2_4:+25113884 Msa0322480:CDS
TTGTATTGAGCATGTTTGGA+AGG 0.520513 2_4:+25111470 Msa0322480:CDS
CCACCTATCTCTATTGGAGA+TGG 0.520907 2_4:+25110905 Msa0322480:CDS
ACACCATAGTTGTTTGTGAA+AGG 0.521405 2_4:-25111031 None:intergenic
TGTTGAAACGACGACGTAGA+TGG 0.526248 2_4:-25108065 None:intergenic
CAGGTAAGCAGAAGAAAGTA+CGG 0.527877 2_4:-25113984 None:intergenic
ATGAAAGTGAATGCGAAAGC+AGG 0.533179 2_4:+25108291 Msa0322480:CDS
CGTTTAAGTGCTTAGAACCA+TGG 0.541817 2_4:-25108104 None:intergenic
TTCGTTACAATGGAGTGCGT+TGG 0.541968 2_4:+25108150 Msa0322480:exon
ATCTTGGCTCAAAAGTAGAA+AGG 0.551209 2_4:+25111724 Msa0322480:CDS
AACACTGATCTTCGTTACAA+TGG 0.551274 2_4:+25108140 Msa0322480:exon
GTTCTTATGGCCGTGTCAGT+CGG 0.553276 2_4:+25111538 Msa0322480:CDS
CTTTCTTCTGCTTACCTGAG+TGG 0.554996 2_4:+25113989 Msa0322480:CDS
CACATGTTCAACACAGCACA+AGG 0.558576 2_4:-25114965 None:intergenic
TGGTCTTATATCCCAGTTGG+TGG 0.561768 2_4:+25113333 Msa0322480:CDS
TTTATTATCAATACATACAA+CGG 0.574436 2_4:-25111496 None:intergenic
AGCGAGAAACTTAACGGCAA+TGG 0.580164 2_4:+25108173 Msa0322480:CDS
CACAAACAACTATGGTGTGT+GGG 0.580409 2_4:+25111036 Msa0322480:CDS
TGGCAGCTGCACCAAATGCA+AGG 0.586864 2_4:-25113383 None:intergenic
TTTATCATAGTTGACCCTGT+AGG 0.596255 2_4:-25114772 None:intergenic
TCCTTATGATCCAAACGTGA+TGG 0.596727 2_4:+25112432 Msa0322480:CDS
GAAGCAAATGCCGACTGACA+CGG 0.598268 2_4:-25111548 None:intergenic
TAAAGAGGATTATGCTGATG+AGG 0.600491 2_4:+25108344 Msa0322480:CDS
AACGTACTATATCGTCAAGT+AGG 0.606795 2_4:-25114797 None:intergenic
TCACAAACAACTATGGTGTG+TGG 0.608110 2_4:+25111035 Msa0322480:CDS
GAATGGTCTTATATCCCAGT+TGG 0.614473 2_4:+25113330 Msa0322480:CDS
TTTGAATGACGGTAATGCAA+GGG 0.614670 2_4:+25113567 Msa0322480:CDS
CTAGCCTGTCTCCCAATACA+GGG 0.617031 2_4:-25114848 None:intergenic
GCATGCAAATCGTACCTGCA+GGG 0.621177 2_4:-25111804 None:intergenic
AGGATTGTTGAGGCTAGCAA+TGG 0.625598 2_4:+25111744 Msa0322480:CDS
AGAGGATTATGCTGATGAGG+AGG 0.633423 2_4:+25108347 Msa0322480:CDS
ATCTGCTTTCAGATCCTACA+GGG 0.639178 2_4:+25114758 Msa0322480:CDS
GAAACGACGACGTAGATGGT+TGG 0.640536 2_4:-25108061 None:intergenic
TTGGTAAGGATCCACCAACT+GGG 0.640890 2_4:-25113344 None:intergenic
AAAAGTAGAAAGGATTGTTG+AGG 0.645770 2_4:+25111734 Msa0322480:CDS
GAAAATAGACCATACCACTC+AGG 0.646689 2_4:-25114003 None:intergenic
GGATATGCAATCTAAGCTTG+CGG 0.648233 2_4:+25108431 Msa0322480:CDS
AATACAGGGTACCTAACAAG+AGG 0.648747 2_4:-25114834 None:intergenic
GCAATTACTGAAGCATATTG+CGG 0.648771 2_4:-25113538 None:intergenic
AAAGTGAATGCGAAAGCAGG+AGG 0.663252 2_4:+25108294 Msa0322480:CDS
GTGTGTACAAACAGCTTATG+GGG 0.667452 2_4:+25112022 Msa0322480:CDS
AAGGAGAATCCATCAATGCG+AGG 0.669695 2_4:+25113613 Msa0322480:CDS
CCATCTCCAATAGAGATAGG+TGG 0.670865 2_4:-25110905 None:intergenic
AAACAACTATGGTGTGTGGG+AGG 0.673871 2_4:+25111039 Msa0322480:CDS
AAACAATAGAAGATCTCTCG+AGG 0.702047 2_4:-25114680 None:intergenic
TGTACAAACAGCTTATGGGG+TGG 0.731941 2_4:+25112025 Msa0322480:CDS
TTAAGTGCTTAGAACCATGG+TGG 0.744773 2_4:-25108101 None:intergenic
CTATTGCAGTATGAGGTTGG+GGG 0.774566 2_4:+25111990 Msa0322480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTATAATTGAGTTTAA+TGG - chr2_4:25109368-25109387 None:intergenic 10.0%
!! ATCCTTAATATTAATTTAAT+TGG - chr2_4:25110333-25110352 None:intergenic 10.0%
!!! AAATTTGTTTTTTATAGATA+TGG + chr2_4:25110466-25110485 Msa0322480:intron 10.0%
!! AAAAAGATAGTAAAAATATA+AGG - chr2_4:25112216-25112235 None:intergenic 10.0%
!!! TTTTTCTTTAATAAATCAAA+AGG - chr2_4:25112681-25112700 None:intergenic 10.0%
!!! CATTTTCAATCAAAAAATAA+AGG - chr2_4:25109604-25109623 None:intergenic 15.0%
!! AGCCAATTAAATTAATATTA+AGG + chr2_4:25110328-25110347 Msa0322480:intron 15.0%
!! TTTATTATCAATACATACAA+CGG - chr2_4:25111499-25111518 None:intergenic 15.0%
!! GAAGTTTCAATATATAATAA+GGG - chr2_4:25111917-25111936 None:intergenic 15.0%
!! AGAAGTTTCAATATATAATA+AGG - chr2_4:25111918-25111937 None:intergenic 15.0%
!!! AAATATTTTCACAAAGTAAA+CGG - chr2_4:25112159-25112178 None:intergenic 15.0%
!! ATTAAATGTATAAAATGTGA+TGG + chr2_4:25112352-25112371 Msa0322480:intron 15.0%
!! AAAAAAATTAAGCAATAAGA+TGG - chr2_4:25114567-25114586 None:intergenic 15.0%
!!! TTAATTTTTTTCACACTTTT+GGG + chr2_4:25114576-25114595 Msa0322480:intron 15.0%
!! TAATCTCTTGAAATAATTGA+TGG + chr2_4:25109173-25109192 Msa0322480:intron 20.0%
!!! AATAACATTTTGAGGTTAAT+TGG - chr2_4:25109467-25109486 None:intergenic 20.0%
!! AAATGTAAAGAATAGTGTTA+TGG + chr2_4:25109619-25109638 Msa0322480:intron 20.0%
!! GTGTAGATATTTGAATTATA+TGG + chr2_4:25109811-25109830 Msa0322480:intron 20.0%
!! AATTAATATTAAGGATGCAA+TGG + chr2_4:25110337-25110356 Msa0322480:intron 20.0%
!! TCATTGCTTGAAAAAAAAAA+TGG - chr2_4:25110703-25110722 None:intergenic 20.0%
!!! GAAAATATATACTGTTTTCA+AGG - chr2_4:25111358-25111377 None:intergenic 20.0%
!! AATAAAAATCCCATTTCAAT+TGG + chr2_4:25111513-25111532 Msa0322480:CDS 20.0%
!!! TTATTTCTGAATTAACTTCT+TGG + chr2_4:25111623-25111642 Msa0322480:intron 20.0%
!! ATGAATTACAAATCTACAAA+AGG - chr2_4:25111666-25111685 None:intergenic 20.0%
!!! AATTCATATTAATTTTCCCT+AGG + chr2_4:25111679-25111698 Msa0322480:intron 20.0%
!!! ATAGAAATGTTTTCAAAAAG+TGG + chr2_4:25112184-25112203 Msa0322480:intron 20.0%
!! TTATCAAGATTAAATACGAT+GGG + chr2_4:25112705-25112724 Msa0322480:intron 20.0%
!! ATGGTTCTTTCTAAATTATA+TGG + chr2_4:25112882-25112901 Msa0322480:intron 20.0%
!! TGGTTCTTTCTAAATTATAT+GGG + chr2_4:25112883-25112902 Msa0322480:intron 20.0%
!!! TTTTATCTTCAAATTTGTGT+AGG + chr2_4:25113308-25113327 Msa0322480:intron 20.0%
!!! CATATATGTCATAGATATTT+TGG + chr2_4:25114029-25114048 Msa0322480:intron 20.0%
!! AATACCAATTCTATGTTATT+TGG + chr2_4:25114170-25114189 Msa0322480:intron 20.0%
!! TTATCCAAATAACATAGAAT+TGG - chr2_4:25114177-25114196 None:intergenic 20.0%
!!! ATTCTATGTTATTTGGATAA+TGG + chr2_4:25114177-25114196 Msa0322480:intron 20.0%
!! TGTGAAAAATCTAATATGAA+TGG + chr2_4:25114329-25114348 Msa0322480:intron 20.0%
!! GTGAAAAATCTAATATGAAT+GGG + chr2_4:25114330-25114349 Msa0322480:intron 20.0%
!!! GTTATGGTTTTTAGTAAAAA+GGG - chr2_4:25114455-25114474 None:intergenic 20.0%
!!! TGTTATGGTTTTTAGTAAAA+AGG - chr2_4:25114456-25114475 None:intergenic 20.0%
!!! CTTAATTTTTTTCACACTTT+TGG + chr2_4:25114575-25114594 Msa0322480:intron 20.0%
!! ATAACCTATAAACTCTATTA+AGG - chr2_4:25114887-25114906 None:intergenic 20.0%
! TAAGAAGAAAGAAGATTTGT+TGG + chr2_4:25108223-25108242 Msa0322480:CDS 25.0%
! TAATGAGAAAATAGAAGATG+CGG + chr2_4:25108692-25108711 Msa0322480:intron 25.0%
!! AAAGTCAATCTACTTGTTAA+AGG - chr2_4:25109065-25109084 None:intergenic 25.0%
! TTGAAATTAGTTGTTTGACA+TGG + chr2_4:25109282-25109301 Msa0322480:intron 25.0%
!!! GTAGATTGATGGTTTTTTAT+TGG + chr2_4:25109304-25109323 Msa0322480:intron 25.0%
!! CTACTTCAAATAACATTTTG+AGG - chr2_4:25109475-25109494 None:intergenic 25.0%
! ATAGTGTTATGGAATTACTT+TGG + chr2_4:25109630-25109649 Msa0322480:intron 25.0%
!! TGATTATTAATGAGAGTACA+AGG + chr2_4:25110047-25110066 Msa0322480:intron 25.0%
!! GATTATTAATGAGAGTACAA+GGG + chr2_4:25110048-25110067 Msa0322480:intron 25.0%
!! ATTATTAATGAGAGTACAAG+GGG + chr2_4:25110049-25110068 Msa0322480:intron 25.0%
! ATTCTTAAATCTCCCAATAT+TGG - chr2_4:25110094-25110113 None:intergenic 25.0%
! CTCAAATATAACTGCTAATT+GGG - chr2_4:25110222-25110241 None:intergenic 25.0%
!!! CACAATTGCTAATTTTGTTT+AGG - chr2_4:25110400-25110419 None:intergenic 25.0%
! TCAAGTATTACATGATACTT+GGG + chr2_4:25110490-25110509 Msa0322480:intron 25.0%
! AATAAGGTATACATGATTTG+TGG - chr2_4:25110527-25110546 None:intergenic 25.0%
! ATTAGAAAGATATAGCAAGA+AGG - chr2_4:25111081-25111100 None:intergenic 25.0%
! TCTATGGTTCATAAAAAGAA+GGG - chr2_4:25111187-25111206 None:intergenic 25.0%
! TTCTATGGTTCATAAAAAGA+AGG - chr2_4:25111188-25111207 None:intergenic 25.0%
! TCCTTTAAATGAAATCTGTT+AGG - chr2_4:25111259-25111278 None:intergenic 25.0%
!! AACAGTATATATTTTCTTGC+TGG + chr2_4:25111362-25111381 Msa0322480:intron 25.0%
!! ACAGTATATATTTTCTTGCT+GGG + chr2_4:25111363-25111382 Msa0322480:intron 25.0%
! AAATTATAATGAAGTGCACT+TGG - chr2_4:25111431-25111450 None:intergenic 25.0%
!! TTCATTATAATTTCAGGTCT+TGG + chr2_4:25111438-25111457 Msa0322480:intron 25.0%
! AATATATAATAAGGGAAACC+TGG - chr2_4:25111909-25111928 None:intergenic 25.0%
!! AAATGTTTTCAAAAAGTGGA+AGG + chr2_4:25112188-25112207 Msa0322480:intron 25.0%
!! AATGTTTTCAAAAAGTGGAA+GGG + chr2_4:25112189-25112208 Msa0322480:intron 25.0%
! ATGTTATGTTGTTAAAGACA+AGG - chr2_4:25112308-25112327 None:intergenic 25.0%
! CTTTAATAAATCAAAAGGCA+TGG - chr2_4:25112676-25112695 None:intergenic 25.0%
! CTTATCAAGATTAAATACGA+TGG + chr2_4:25112704-25112723 Msa0322480:intron 25.0%
! TATCAAGATTAAATACGATG+GGG + chr2_4:25112706-25112725 Msa0322480:intron 25.0%
! AGTTACAAAAACTTATGAAG+AGG + chr2_4:25112734-25112753 Msa0322480:intron 25.0%
! AAAAACTTATGAAGAGGTAA+GGG + chr2_4:25112740-25112759 Msa0322480:intron 25.0%
! GTATTATCCTATATGGAAAA+TGG - chr2_4:25112957-25112976 None:intergenic 25.0%
! CAACTAAGTATTATCCTATA+TGG - chr2_4:25112964-25112983 None:intergenic 25.0%
! AAGATATGTAATAGTACGAT+AGG - chr2_4:25113017-25113036 None:intergenic 25.0%
!! ATTGCTACAATTTTGAATGA+CGG + chr2_4:25113556-25113575 Msa0322480:CDS 25.0%
! TATTACTTATGGAAGAAGTA+AGG + chr2_4:25113594-25113613 Msa0322480:CDS 25.0%
!! AAGCATAGTTTTCGTAATTT+TGG - chr2_4:25113694-25113713 None:intergenic 25.0%
!! ATTTTCTTTTTCTTTCAGCT+TGG + chr2_4:25113860-25113879 Msa0322480:intron 25.0%
! AGAATTGGTATTATGAATTG+TGG - chr2_4:25114162-25114181 None:intergenic 25.0%
! TTTAGTGTTAACAATAAAGC+AGG - chr2_4:25114205-25114224 None:intergenic 25.0%
! TATATAAACACGATAGTACA+AGG + chr2_4:25114283-25114302 Msa0322480:intron 25.0%
! AGTTAATCATCATTCCATTA+TGG - chr2_4:25114614-25114633 None:intergenic 25.0%
! AGAGACATTCTTAAGTTATT+TGG - chr2_4:25114730-25114749 None:intergenic 25.0%
!!! ATAAACTTTTTCCTCTTGTT+AGG + chr2_4:25114823-25114842 Msa0322480:three_prime_UTR 25.0%
ATTTAATTAGTAGACTCTGC+TGG + chr2_4:25108563-25108582 Msa0322480:intron 30.0%
AAAACTAGCTCAAAGAATGA+GGG - chr2_4:25108908-25108927 None:intergenic 30.0%
TGCTCTAATACCATGTTAAA+CGG - chr2_4:25108947-25108966 None:intergenic 30.0%
GATGCGCAATAAATGTAAAA+TGG + chr2_4:25109239-25109258 Msa0322480:intron 30.0%
!! TATGCTCTGTCGATTTAAAA+TGG + chr2_4:25109762-25109781 Msa0322480:intron 30.0%
AAATGGTGTCTCATATCTTT+AGG + chr2_4:25109779-25109798 Msa0322480:intron 30.0%
AATGGTGTCTCATATCTTTA+GGG + chr2_4:25109780-25109799 Msa0322480:intron 30.0%
! AAAAAAATTATCGAGTTGCC+AGG + chr2_4:25109868-25109887 Msa0322480:intron 30.0%
! AAAAAATTATCGAGTTGCCA+GGG + chr2_4:25109869-25109888 Msa0322480:intron 30.0%
GAGTAATTTCTATTGTGACA+AGG + chr2_4:25109904-25109923 Msa0322480:intron 30.0%
AATTTCTATTGTGACAAGGA+TGG + chr2_4:25109908-25109927 Msa0322480:intron 30.0%
TGGGAGATTTAAGAATTCAA+TGG + chr2_4:25110098-25110117 Msa0322480:intron 30.0%
TGGTGTGATATCTCATAAAA+AGG - chr2_4:25110198-25110217 None:intergenic 30.0%
AATATAACTGCTAATTGGGA+TGG - chr2_4:25110218-25110237 None:intergenic 30.0%
CCTCAAATATAACTGCTAAT+TGG - chr2_4:25110223-25110242 None:intergenic 30.0%
CCAATTAGCAGTTATATTTG+AGG + chr2_4:25110220-25110239 Msa0322480:intron 30.0%
CTCAAGTATTACATGATACT+TGG + chr2_4:25110489-25110508 Msa0322480:intron 30.0%
CAAGTATTACATGATACTTG+GGG + chr2_4:25110491-25110510 Msa0322480:intron 30.0%
AAGTATTACATGATACTTGG+GGG + chr2_4:25110492-25110511 Msa0322480:intron 30.0%
TTTATTCATAGAAAGAGCCA+TGG - chr2_4:25110554-25110573 None:intergenic 30.0%
GCATTGTTAACTTTCATACA+CGG + chr2_4:25110672-25110691 Msa0322480:intron 30.0%
GGATTAAAAGTTGGACTTAT+TGG + chr2_4:25110998-25111017 Msa0322480:CDS 30.0%
GCCTAACAGATTTCATTTAA+AGG + chr2_4:25111255-25111274 Msa0322480:intron 30.0%
CAAGGACATAAATATCAAAC+TGG - chr2_4:25111340-25111359 None:intergenic 30.0%
GTGCACTTCATTATAATTTC+AGG + chr2_4:25111432-25111451 Msa0322480:intron 30.0%
TAAGAACGTCCAATTGAAAT+GGG - chr2_4:25111525-25111544 None:intergenic 30.0%
ATAAGAACGTCCAATTGAAA+TGG - chr2_4:25111526-25111545 None:intergenic 30.0%
ATTTCAATTGGACGTTCTTA+TGG + chr2_4:25111525-25111544 Msa0322480:CDS 30.0%
TTCACGAAGAATTGTTAAGA+AGG + chr2_4:25111568-25111587 Msa0322480:CDS 30.0%
AAAAGTAGAAAGGATTGTTG+AGG + chr2_4:25111734-25111753 Msa0322480:CDS 30.0%
AACTTCTGTCCTGTTATTAT+AGG + chr2_4:25111931-25111950 Msa0322480:intron 30.0%
!!! GGTTTCTAGTGTTTTTATTC+AGG + chr2_4:25112074-25112093 Msa0322480:intron 30.0%
TTAATTGTTGTACTGTACAG+TGG + chr2_4:25112107-25112126 Msa0322480:intron 30.0%
! ATGTTTTCAAAAAGTGGAAG+GGG + chr2_4:25112190-25112209 Msa0322480:intron 30.0%
TATGTTGTTAAAGACAAGGA+AGG - chr2_4:25112304-25112323 None:intergenic 30.0%
! AACACTTTTGTATGAGACAT+GGG - chr2_4:25112538-25112557 None:intergenic 30.0%
!! TCATACAAAAGTGTTCTTTG+AGG + chr2_4:25112543-25112562 Msa0322480:CDS 30.0%
CAAAAACTTATGAAGAGGTA+AGG + chr2_4:25112739-25112758 Msa0322480:intron 30.0%
! GCTAGCTGTATTATATTTTG+AGG + chr2_4:25112773-25112792 Msa0322480:intron 30.0%
GTTCCACATAAATTTAGCAA+GGG + chr2_4:25112905-25112924 Msa0322480:intron 30.0%
ATTATACTGGAGAACATTGA+CGG + chr2_4:25113127-25113146 Msa0322480:intron 30.0%
TCTATTATGTAACAGCTCAA+AGG - chr2_4:25113208-25113227 None:intergenic 30.0%
TTGAGCTGTTACATAATAGA+TGG + chr2_4:25113208-25113227 Msa0322480:intron 30.0%
TGAGCTGTTACATAATAGAT+GGG + chr2_4:25113209-25113228 Msa0322480:intron 30.0%
TCTTCAAATTTGTGTAGGAA+TGG + chr2_4:25113313-25113332 Msa0322480:intron 30.0%
! TAATATCGTTTTCGTCCAAT+AGG + chr2_4:25113484-25113503 Msa0322480:intron 30.0%
! CATAGTTTTCGTAATTTTGG+AGG - chr2_4:25113691-25113710 None:intergenic 30.0%
AAAATGTCAGCTCTCAAATT+TGG - chr2_4:25113794-25113813 None:intergenic 30.0%
! CAGAGATCTTTCTTTCTTTT+TGG + chr2_4:25113913-25113932 Msa0322480:CDS 30.0%
!! AGATATTTTGGACTTTGTAG+TGG + chr2_4:25114041-25114060 Msa0322480:intron 30.0%
AGATAGAAGATAGAATGTAG+AGG - chr2_4:25114101-25114120 None:intergenic 30.0%
CTACATTCTATCTTCTATCT+TGG + chr2_4:25114101-25114120 Msa0322480:intron 30.0%
CATAAAGGTTAGTAGTATTC+AGG + chr2_4:25114487-25114506 Msa0322480:intron 30.0%
TATATCACAAGAAAGCAAAC+TGG - chr2_4:25114535-25114554 None:intergenic 30.0%
!! GATTAACTGATTTTTATCGC+AGG + chr2_4:25114626-25114645 Msa0322480:intron 30.0%
GGAACCTTAATAGAGTTTAT+AGG + chr2_4:25114880-25114899 Msa0322480:three_prime_UTR 30.0%
!!! CTTTTTTGAGAGGGATTGTA+TGG - chr2_4:25108039-25108058 None:intergenic 35.0%
AACACTGATCTTCGTTACAA+TGG + chr2_4:25108140-25108159 Msa0322480:exon 35.0%
TTTGCATAAGTCCTTCTTTG+CGG + chr2_4:25108199-25108218 Msa0322480:CDS 35.0%
TTTCTTCTTAACCGCAAAGA+AGG - chr2_4:25108213-25108232 None:intergenic 35.0%
TAAAGAGGATTATGCTGATG+AGG + chr2_4:25108344-25108363 Msa0322480:CDS 35.0%
! TGATGAGGAGGATTTTGTTA+AGG + chr2_4:25108359-25108378 Msa0322480:CDS 35.0%
AATGCAGCAGAAAAAGTCTA+TGG + chr2_4:25108410-25108429 Msa0322480:CDS 35.0%
CAAAACTAGCTCAAAGAATG+AGG - chr2_4:25108909-25108928 None:intergenic 35.0%
! AATACCATGTTAAACGGACT+TGG - chr2_4:25108941-25108960 None:intergenic 35.0%
ATGGTATTAGAGCAGAGTTA+AGG + chr2_4:25108953-25108972 Msa0322480:intron 35.0%
! ATCTACTTGTTAAAGGAGCT+TGG - chr2_4:25109058-25109077 None:intergenic 35.0%
TGTTTGACATGGTAGATTGA+TGG + chr2_4:25109293-25109312 Msa0322480:intron 35.0%
CATGCACTTACACTGTAAAA+TGG - chr2_4:25109344-25109363 None:intergenic 35.0%
ATGAAATTGTAGCTCCTTCT+AGG + chr2_4:25109834-25109853 Msa0322480:intron 35.0%
TGAAATTGTAGCTCCTTCTA+GGG + chr2_4:25109835-25109854 Msa0322480:intron 35.0%
! AAAAATTATCGAGTTGCCAG+GGG + chr2_4:25109870-25109889 Msa0322480:intron 35.0%
TATTGTGACAAGGATGGTTA+TGG + chr2_4:25109914-25109933 Msa0322480:intron 35.0%
AATATTGGATTGTACAGGGT+TGG - chr2_4:25110079-25110098 None:intergenic 35.0%
AACCCTGTACAATCCAATAT+TGG + chr2_4:25110078-25110097 Msa0322480:intron 35.0%
ACCCTGTACAATCCAATATT+GGG + chr2_4:25110079-25110098 Msa0322480:intron 35.0%
TCCCAATATTGGATTGTACA+GGG - chr2_4:25110083-25110102 None:intergenic 35.0%
TTGCGGATGGTATATTACAA+GGG - chr2_4:25110168-25110187 None:intergenic 35.0%
CAAAATTAGCAATTGTGTGC+AGG + chr2_4:25110403-25110422 Msa0322480:intron 35.0%
TGCAGGTTCTATAAAGAAAG+TGG + chr2_4:25110420-25110439 Msa0322480:intron 35.0%
GCAGGTTCTATAAAGAAAGT+GGG + chr2_4:25110421-25110440 Msa0322480:intron 35.0%
!!! TGGGACTAATGCGTTTTTTA+GGG + chr2_4:25110440-25110459 Msa0322480:intron 35.0%
! AAGGTATACATGATTTGTGG+CGG - chr2_4:25110524-25110543 None:intergenic 35.0%
! TCAAGCACAAATTGACGTTT+TGG + chr2_4:25110627-25110646 Msa0322480:intron 35.0%
TTTACTTTCACGTACAACAC+TGG + chr2_4:25110770-25110789 Msa0322480:intron 35.0%
GTACTAGATCTAGTCGTTAT+TGG + chr2_4:25110929-25110948 Msa0322480:CDS 35.0%
GGCAAGTTAGGATTAAAAGT+TGG + chr2_4:25110989-25111008 Msa0322480:CDS 35.0%
AAAAGTTGGACTTATTGGTC+CGG + chr2_4:25111003-25111022 Msa0322480:CDS 35.0%
CACCATAGTTGTTTGTGAAA+GGG - chr2_4:25111033-25111052 None:intergenic 35.0%
ACACCATAGTTGTTTGTGAA+AGG - chr2_4:25111034-25111053 None:intergenic 35.0%
!! CTCTAAGATCACTGTTTCTA+TGG - chr2_4:25111203-25111222 None:intergenic 35.0%
ATAATGAAGTGCACTTGGTA+AGG - chr2_4:25111426-25111445 None:intergenic 35.0%
AAGGTTGTATTGAGCATGTT+TGG + chr2_4:25111466-25111485 Msa0322480:CDS 35.0%
TTGTATTGAGCATGTTTGGA+AGG + chr2_4:25111470-25111489 Msa0322480:CDS 35.0%
ATCTTGGCTCAAAAGTAGAA+AGG + chr2_4:25111724-25111743 Msa0322480:CDS 35.0%
AGTAGCAAGCCTATAATAAC+AGG - chr2_4:25111943-25111962 None:intergenic 35.0%
AAACTATTGCAGTATGAGGT+TGG + chr2_4:25111987-25112006 Msa0322480:CDS 35.0%
AACTATTGCAGTATGAGGTT+GGG + chr2_4:25111988-25112007 Msa0322480:CDS 35.0%
CAGATAAATGTTACCAAGTC+CGG + chr2_4:25112247-25112266 Msa0322480:intron 35.0%
AGATAAATGTTACCAAGTCC+GGG + chr2_4:25112248-25112267 Msa0322480:intron 35.0%
GGCATTGCATAAAGAAATGT+TGG - chr2_4:25112517-25112536 None:intergenic 35.0%
! GAACACTTTTGTATGAGACA+TGG - chr2_4:25112539-25112558 None:intergenic 35.0%
AACAGAACTGCAATACTTAG+TGG - chr2_4:25112600-25112619 None:intergenic 35.0%
TATAGAGAAATTCCAATCGC+AGG + chr2_4:25112626-25112645 Msa0322480:intron 35.0%
CTAGCAATACACTTTCTAAC+AGG + chr2_4:25112800-25112819 Msa0322480:intron 35.0%
! TCAATTTTCAGCCAATAGGA+GGG - chr2_4:25112842-25112861 None:intergenic 35.0%
! TTCAATTTTCAGCCAATAGG+AGG - chr2_4:25112843-25112862 None:intergenic 35.0%
! CCATTCAATTTTCAGCCAAT+AGG - chr2_4:25112846-25112865 None:intergenic 35.0%
! CCTATTGGCTGAAAATTGAA+TGG + chr2_4:25112843-25112862 Msa0322480:intron 35.0%
GCTGAAAATTGAATGGTTCT+CGG + chr2_4:25112850-25112869 Msa0322480:intron 35.0%
GGTTCCACATAAATTTAGCA+AGG + chr2_4:25112904-25112923 Msa0322480:intron 35.0%
! GATGCATCCATTTTCCATAT+AGG + chr2_4:25112947-25112966 Msa0322480:intron 35.0%
! ACATTTTCAGATATTTGCCG+CGG + chr2_4:25113053-25113072 Msa0322480:intron 35.0%
! GCTGAAAGCATGTATTATAC+TGG + chr2_4:25113114-25113133 Msa0322480:intron 35.0%
TTATACTGGAGAACATTGAC+GGG + chr2_4:25113128-25113147 Msa0322480:intron 35.0%
AAAGGACAATTGGAAATCGA+GGG - chr2_4:25113190-25113209 None:intergenic 35.0%
GCAATTACTGAAGCATATTG+CGG - chr2_4:25113541-25113560 None:intergenic 35.0%
! TTTTGAATGACGGTAATGCA+AGG + chr2_4:25113566-25113585 Msa0322480:CDS 35.0%
TTTGAATGACGGTAATGCAA+GGG + chr2_4:25113567-25113586 Msa0322480:CDS 35.0%
GCAAGGGACATTATTACTTA+TGG + chr2_4:25113583-25113602 Msa0322480:CDS 35.0%
ATTTGATTACCTCGCATTGA+TGG - chr2_4:25113625-25113644 None:intergenic 35.0%
!! TTTCGTAATTTTGGAGGAAC+TGG - chr2_4:25113685-25113704 None:intergenic 35.0%
TCAGACTTCTCATTGATGTA+AGG + chr2_4:25113813-25113832 Msa0322480:intron 35.0%
TTTCAGCTTGGAATACACTT+TGG + chr2_4:25113872-25113891 Msa0322480:intron 35.0%
ATTAGCACTAATTGTTCAGC+TGG + chr2_4:25113936-25113955 Msa0322480:CDS 35.0%
CACTAAACTAAAATCCCCTT+TGG + chr2_4:25114218-25114237 Msa0322480:intron 35.0%
AAGAACAGCTTGAATGGAAA+TGG - chr2_4:25114357-25114376 None:intergenic 35.0%
AACTCAAAGAACAGCTTGAA+TGG - chr2_4:25114363-25114382 None:intergenic 35.0%
!! AGTTTTAATGAAAGCTCCCT+AGG + chr2_4:25114379-25114398 Msa0322480:intron 35.0%
!! GTTTTAATGAAAGCTCCCTA+GGG + chr2_4:25114380-25114399 Msa0322480:intron 35.0%
TTAAATCTCTCCTATCCCTA+GGG - chr2_4:25114398-25114417 None:intergenic 35.0%
ATTAAATCTCTCCTATCCCT+AGG - chr2_4:25114399-25114418 None:intergenic 35.0%
!! TATGTCACGAGGTATTGTTA+TGG - chr2_4:25114471-25114490 None:intergenic 35.0%
AACAATACCTCGTGACATAA+AGG + chr2_4:25114472-25114491 Msa0322480:intron 35.0%
GGATTGAAATTGCTCCATAA+TGG + chr2_4:25114597-25114616 Msa0322480:intron 35.0%
AAACAATAGAAGATCTCTCG+AGG - chr2_4:25114683-25114702 None:intergenic 35.0%
TTTATCATAGTTGACCCTGT+AGG - chr2_4:25114775-25114794 None:intergenic 35.0%
AACGTACTATATCGTCAAGT+AGG - chr2_4:25114800-25114819 None:intergenic 35.0%
! ACTCATTTTCAACACCACCA+TGG + chr2_4:25108087-25108106 Msa0322480:five_prime_UTR 40.0%
TTAAGTGCTTAGAACCATGG+TGG - chr2_4:25108104-25108123 None:intergenic 40.0%
CGTTTAAGTGCTTAGAACCA+TGG - chr2_4:25108107-25108126 None:intergenic 40.0%
ATGAAAGTGAATGCGAAAGC+AGG + chr2_4:25108291-25108310 Msa0322480:CDS 40.0%
GGATATGCAATCTAAGCTTG+CGG + chr2_4:25108431-25108450 Msa0322480:CDS 40.0%
AGATCCAAGTCCGTTTAACA+TGG + chr2_4:25108934-25108953 Msa0322480:intron 40.0%
TGCATCGTGGAAATTTGACT+CGG + chr2_4:25108978-25108997 Msa0322480:intron 40.0%
GTATACTCTATCCGTGTACA+TGG + chr2_4:25109125-25109144 Msa0322480:intron 40.0%
GCACACAAAATTGAGCTGTT+TGG - chr2_4:25109559-25109578 None:intergenic 40.0%
CTCCCAATATTGGATTGTAC+AGG - chr2_4:25110084-25110103 None:intergenic 40.0%
CTTGCGGATGGTATATTACA+AGG - chr2_4:25110169-25110188 None:intergenic 40.0%
!! CATAAAAAGGTGCTCTCTTG+CGG - chr2_4:25110185-25110204 None:intergenic 40.0%
AATGGCGTGTTACAAAGGAT+AGG + chr2_4:25110355-25110374 Msa0322480:intron 40.0%
ATGGCGTGTTACAAAGGATA+GGG + chr2_4:25110356-25110375 Msa0322480:intron 40.0%
!!! GTGGGACTAATGCGTTTTTT+AGG + chr2_4:25110439-25110458 Msa0322480:intron 40.0%
!!! GGGACTAATGCGTTTTTTAG+GGG + chr2_4:25110441-25110460 Msa0322480:intron 40.0%
TATTACATGATACTTGGGGG+CGG + chr2_4:25110495-25110514 Msa0322480:intron 40.0%
TGTATACCTTATTCCGTCCA+TGG + chr2_4:25110534-25110553 Msa0322480:intron 40.0%
TTCATAGAAAGAGCCATGGA+CGG - chr2_4:25110550-25110569 None:intergenic 40.0%
AAGACGTGTATGCCATAACA+CGG - chr2_4:25110602-25110621 None:intergenic 40.0%
!!! CAACACTGGTTTTCACGTTT+CGG + chr2_4:25110784-25110803 Msa0322480:intron 40.0%
ACTCCATCTCCAATAGAGAT+AGG - chr2_4:25110911-25110930 None:intergenic 40.0%
! GATCTAGTCGTTATTGGTTG+TGG + chr2_4:25110935-25110954 Msa0322480:CDS 40.0%
TTGTTTGTGAAAGGGAGATC+CGG - chr2_4:25111025-25111044 None:intergenic 40.0%
CTCCCTTTCACAAACAACTA+TGG + chr2_4:25111028-25111047 Msa0322480:CDS 40.0%
TCACAAACAACTATGGTGTG+TGG + chr2_4:25111035-25111054 Msa0322480:CDS 40.0%
CACAAACAACTATGGTGTGT+GGG + chr2_4:25111036-25111055 Msa0322480:CDS 40.0%
! ATTTCAGGTCTTGGACTTGA+AGG + chr2_4:25111447-25111466 Msa0322480:intron 40.0%
AACTTCCCTAAACCTTGCTA+CGG + chr2_4:25111867-25111886 Msa0322480:intron 40.0%
AGGGAAACTATTGCAGTATG+AGG + chr2_4:25111983-25112002 Msa0322480:CDS 40.0%
ACTATTGCAGTATGAGGTTG+GGG + chr2_4:25111989-25112008 Msa0322480:CDS 40.0%
TAAAGACAAGGAAGGAAGCA+TGG - chr2_4:25112296-25112315 None:intergenic 40.0%
TCCTTATGATCCAAACGTGA+TGG + chr2_4:25112432-25112451 Msa0322480:CDS 40.0%
ACCATCACGTTTGGATCATA+AGG - chr2_4:25112436-25112455 None:intergenic 40.0%
! TCCAAACGTGATGGTTTTCA+TGG + chr2_4:25112441-25112460 Msa0322480:CDS 40.0%
TCCATGAAAACCATCACGTT+TGG - chr2_4:25112445-25112464 None:intergenic 40.0%
TTATGAAGAGGTAAGGGCTT+TGG + chr2_4:25112746-25112765 Msa0322480:intron 40.0%
ATTGAATGGTTCTCGGACTT+TGG + chr2_4:25112857-25112876 Msa0322480:intron 40.0%
GAGCCCTTGCTAAATTTATG+TGG - chr2_4:25112911-25112930 None:intergenic 40.0%
GGGCTCATCTTGTCAAAAAA+AGG + chr2_4:25112925-25112944 Msa0322480:intron 40.0%
AATAGTACGATAGGACAGAG+TGG - chr2_4:25113008-25113027 None:intergenic 40.0%
! AAATTGATGACCAATGACCG+CGG - chr2_4:25113073-25113092 None:intergenic 40.0%
GGGTAAAAGACTGCTATCAA+GGG - chr2_4:25113170-25113189 None:intergenic 40.0%
AGGGTAAAAGACTGCTATCA+AGG - chr2_4:25113171-25113190 None:intergenic 40.0%
CAAAGGACAATTGGAAATCG+AGG - chr2_4:25113191-25113210 None:intergenic 40.0%
GTAACAGCTCAAAGGACAAT+TGG - chr2_4:25113200-25113219 None:intergenic 40.0%
!! GAATGGTCTTATATCCCAGT+TGG + chr2_4:25113330-25113349 Msa0322480:CDS 40.0%
CTTCTGTTCTGTGTTTGGTA+AGG - chr2_4:25113361-25113380 None:intergenic 40.0%
AGGTTCTTCTGTTCTGTGTT+TGG - chr2_4:25113366-25113385 None:intergenic 40.0%
GAACAGAAGAACCTTGCATT+TGG + chr2_4:25113372-25113391 Msa0322480:CDS 40.0%
! CTGGTAACATTTAGGGTCTA+AGG - chr2_4:25113666-25113685 None:intergenic 40.0%
GGAGGAACTGGTAACATTTA+GGG - chr2_4:25113673-25113692 None:intergenic 40.0%
TGGAGGAACTGGTAACATTT+AGG - chr2_4:25113674-25113693 None:intergenic 40.0%
CCAGATAGTAGAACTGTTTG+AGG - chr2_4:25113729-25113748 None:intergenic 40.0%
CCTCAAACAGTTCTACTATC+TGG + chr2_4:25113726-25113745 Msa0322480:intron 40.0%
ATACACTTTGGCCACAAGAA+AGG + chr2_4:25113884-25113903 Msa0322480:CDS 40.0%
ATTGTTCAGCTGGACATTGA+AGG + chr2_4:25113946-25113965 Msa0322480:CDS 40.0%
CAGGTAAGCAGAAGAAAGTA+CGG - chr2_4:25113987-25114006 None:intergenic 40.0%
GAAAATAGACCATACCACTC+AGG - chr2_4:25114006-25114025 None:intergenic 40.0%
ATCTTCTATCTTGGCTTCAG+TGG + chr2_4:25114110-25114129 Msa0322480:intron 40.0%
AAAATCCCCTTTGGTATGCA+TGG + chr2_4:25114227-25114246 Msa0322480:intron 40.0%
ATCCTACCATGCATACCAAA+GGG - chr2_4:25114236-25114255 None:intergenic 40.0%
TATCCTACCATGCATACCAA+AGG - chr2_4:25114237-25114256 None:intergenic 40.0%
TATGCATGGTAGGATAGCAT+AGG + chr2_4:25114241-25114260 Msa0322480:intron 40.0%
AAGGGAGTTGTAGCATGTAA+AGG - chr2_4:25114437-25114456 None:intergenic 40.0%
CTACTAACCTTTATGTCACG+AGG - chr2_4:25114482-25114501 None:intergenic 40.0%
! CTGATTTTTATCGCAGGATG+TGG + chr2_4:25114632-25114651 Msa0322480:intron 40.0%
ATCTGCTTTCAGATCCTACA+GGG + chr2_4:25114758-25114777 Msa0322480:CDS 40.0%
! AATACAGGGTACCTAACAAG+AGG - chr2_4:25114837-25114856 None:intergenic 40.0%
TCTTGTTAGGTACCCTGTAT+TGG + chr2_4:25114836-25114855 Msa0322480:three_prime_UTR 40.0%
CTTGTTAGGTACCCTGTATT+GGG + chr2_4:25114837-25114856 Msa0322480:three_prime_UTR 40.0%
GAGACAGGCTAGATTACATT+AGG + chr2_4:25114859-25114878 Msa0322480:three_prime_UTR 40.0%
!!! TGGTTGGCGCTTTTTTGAGA+GGG - chr2_4:25108048-25108067 None:intergenic 45.0%
!!! ATGGTTGGCGCTTTTTTGAG+AGG - chr2_4:25108049-25108068 None:intergenic 45.0%
TGTTGAAACGACGACGTAGA+TGG - chr2_4:25108068-25108087 None:intergenic 45.0%
TTCGTTACAATGGAGTGCGT+TGG + chr2_4:25108150-25108169 Msa0322480:exon 45.0%
CGTTGGAGCGAGAAACTTAA+CGG + chr2_4:25108167-25108186 Msa0322480:CDS 45.0%
AGCGAGAAACTTAACGGCAA+TGG + chr2_4:25108173-25108192 Msa0322480:CDS 45.0%
TTTCGTCGAACGCAGCAATT+CGG + chr2_4:25108259-25108278 Msa0322480:CDS 45.0%
AAAGTGAATGCGAAAGCAGG+AGG + chr2_4:25108294-25108313 Msa0322480:CDS 45.0%
! GAGTTGTGTCGTTGCTAAAG+AGG + chr2_4:25108329-25108348 Msa0322480:CDS 45.0%
AGAGGATTATGCTGATGAGG+AGG + chr2_4:25108347-25108366 Msa0322480:CDS 45.0%
! GAGGAGGATTTTGTTAAGGC+TGG + chr2_4:25108363-25108382 Msa0322480:CDS 45.0%
! GAGGATTTTGTTAAGGCTGG+TGG + chr2_4:25108366-25108385 Msa0322480:CDS 45.0%
GCAATCTAAGCTTGCGGATA+AGG + chr2_4:25108437-25108456 Msa0322480:CDS 45.0%
! TCGAGTTGCGCATTGATCAT+CGG + chr2_4:25108509-25108528 Msa0322480:intron 45.0%
CAGAGTTAAGGATTGCATCG+TGG + chr2_4:25108965-25108984 Msa0322480:intron 45.0%
GTGAGGGTGGATGTTAAAGT+TGG + chr2_4:25109013-25109032 Msa0322480:intron 45.0%
ATGACAGCAGTCCATGTACA+CGG - chr2_4:25109139-25109158 None:intergenic 45.0%
! ATTGTAGCTCCTTCTAGGGA+CGG + chr2_4:25109839-25109858 Msa0322480:intron 45.0%
!! TTTCTAGTTCCGTCCCTAGA+AGG - chr2_4:25109851-25109870 None:intergenic 45.0%
GATGCAATGGCGTGTTACAA+AGG + chr2_4:25110350-25110369 Msa0322480:intron 45.0%
AAAGAGCCATGGACGGAATA+AGG - chr2_4:25110543-25110562 None:intergenic 45.0%
! ATGCCATAACACGGGTTACA+CGG - chr2_4:25110593-25110612 None:intergenic 45.0%
AGACGTGTATGCCATAACAC+GGG - chr2_4:25110601-25110620 None:intergenic 45.0%
GCAACTGCAAGAGCGATTAA+CGG - chr2_4:25110886-25110905 None:intergenic 45.0%
CAGTTGCCACCTATCTCTAT+TGG + chr2_4:25110899-25110918 Msa0322480:intron 45.0%
CCATCTCCAATAGAGATAGG+TGG - chr2_4:25110908-25110927 None:intergenic 45.0%
CCACCTATCTCTATTGGAGA+TGG + chr2_4:25110905-25110924 Msa0322480:CDS 45.0%
AAACAACTATGGTGTGTGGG+AGG + chr2_4:25111039-25111058 Msa0322480:CDS 45.0%
GTGTGGGAGGACGAATTTAA+AGG + chr2_4:25111052-25111071 Msa0322480:CDS 45.0%
AGGATTGTTGAGGCTAGCAA+TGG + chr2_4:25111744-25111763 Msa0322480:CDS 45.0%
TACCTCCGTAGCAAGGTTTA+GGG - chr2_4:25111875-25111894 None:intergenic 45.0%
ACAAAACTACCTCCGTAGCA+AGG - chr2_4:25111882-25111901 None:intergenic 45.0%
CTATTGCAGTATGAGGTTGG+GGG + chr2_4:25111990-25112009 Msa0322480:CDS 45.0%
! AACAGTGTGCTGACAAGCTT+AGG + chr2_4:25112131-25112150 Msa0322480:intron 45.0%
ACCAATACTCAGAGACTTCC+CGG - chr2_4:25112269-25112288 None:intergenic 45.0%
CCAAACATGTTTCCTGCGAT+TGG - chr2_4:25112641-25112660 None:intergenic 45.0%
CCAATCGCAGGAAACATGTT+TGG + chr2_4:25112638-25112657 Msa0322480:intron 45.0%
! TGGTTCTCGGACTTTGGAAA+TGG + chr2_4:25112863-25112882 Msa0322480:intron 45.0%
!! TGGTCTTATATCCCAGTTGG+TGG + chr2_4:25113333-25113352 Msa0322480:CDS 45.0%
TTGGTAAGGATCCACCAACT+GGG - chr2_4:25113347-25113366 None:intergenic 45.0%
TTTGGTAAGGATCCACCAAC+TGG - chr2_4:25113348-25113367 None:intergenic 45.0%
ATGTGACAATGTCATGCCTG+TGG - chr2_4:25113424-25113443 None:intergenic 45.0%
CTCACAACAGAGTAGCCTAT+TGG - chr2_4:25113502-25113521 None:intergenic 45.0%
CTCTGTTGTGAGATCGTTGT+CGG + chr2_4:25113510-25113529 Msa0322480:CDS 45.0%
AAGGAGAATCCATCAATGCG+AGG + chr2_4:25113613-25113632 Msa0322480:CDS 45.0%
! CTCTGTCGTTTCCTTTCTTG+TGG - chr2_4:25113898-25113917 None:intergenic 45.0%
CTTTCTTCTGCTTACCTGAG+TGG + chr2_4:25113989-25114008 Msa0322480:CDS 45.0%
TTCTGCTTACCTGAGTGGTA+TGG + chr2_4:25113994-25114013 Msa0322480:intron 45.0%
TCCTACCATGCATACCAAAG+GGG - chr2_4:25114235-25114254 None:intergenic 45.0%
GGATAGCATAGGACACGATA+AGG + chr2_4:25114252-25114271 Msa0322480:intron 45.0%
AATGAAAGCTCCCTAGGGAT+AGG + chr2_4:25114385-25114404 Msa0322480:intron 45.0%
! TTTTATCGCAGGATGTGGCA+AGG + chr2_4:25114637-25114656 Msa0322480:intron 45.0%
AGGATGTGGCAAGGATTTCT+TGG + chr2_4:25114646-25114665 Msa0322480:intron 45.0%
CATCTGCTTTCAGATCCTAC+AGG + chr2_4:25114757-25114776 Msa0322480:CDS 45.0%
CACATGTTCAACACAGCACA+AGG - chr2_4:25114968-25114987 None:intergenic 45.0%
!!! TTTTTTTTTGTTATAATTTT+AGG + chr2_4:25112399-25112418 Msa0322480:intron 5.0%
GAAACGACGACGTAGATGGT+TGG - chr2_4:25108064-25108083 None:intergenic 50.0%
! TACTCTACAGTTTTCGCCCC+TGG - chr2_4:25109889-25109908 None:intergenic 50.0%
CGCCACAATCTCGTGATATG+CGG + chr2_4:25109950-25109969 Msa0322480:intron 50.0%
ACAAGGGAGCGAAAGAGTTC+AGG - chr2_4:25110152-25110171 None:intergenic 50.0%
!! AAAAGGTGCTCTCTTGCGGA+TGG - chr2_4:25110181-25110200 None:intergenic 50.0%
! GTTATTGGTTGTGGTCCTGC+TGG + chr2_4:25110944-25110963 Msa0322480:CDS 50.0%
CTTGCTCTAGCTGCTGAATC+TGG + chr2_4:25110968-25110987 Msa0322480:CDS 50.0%
GCTGCTGAATCTGGCAAGTT+AGG + chr2_4:25110977-25110996 Msa0322480:CDS 50.0%
GTTCTTATGGCCGTGTCAGT+CGG + chr2_4:25111538-25111557 Msa0322480:CDS 50.0%
! GAAGCAAATGCCGACTGACA+CGG - chr2_4:25111551-25111570 None:intergenic 50.0%
GAGTCAGGTGTCTCGTATCT+TGG + chr2_4:25111708-25111727 Msa0322480:CDS 50.0%
ATGATACTGTAGTGCCCTGC+AGG + chr2_4:25111790-25111809 Msa0322480:CDS 50.0%
GCATGCAAATCGTACCTGCA+GGG - chr2_4:25111807-25111826 None:intergenic 50.0%
AGCATGCAAATCGTACCTGC+AGG - chr2_4:25111808-25111827 None:intergenic 50.0%
TTCCCTAAACCTTGCTACGG+AGG + chr2_4:25111870-25111889 Msa0322480:intron 50.0%
CTACCTCCGTAGCAAGGTTT+AGG - chr2_4:25111876-25111895 None:intergenic 50.0%
!!! GGAGGTAGTTTTGTAGCACC+AGG + chr2_4:25111888-25111907 Msa0322480:intron 50.0%
!! AGGCTTGCTACTGTTGCATC+AGG + chr2_4:25111951-25111970 Msa0322480:intron 50.0%
TTGCATCAGGAGCAGCTTCA+GGG + chr2_4:25111964-25111983 Msa0322480:CDS 50.0%
AGCTTATGGGGTGGAAGTTG+AGG + chr2_4:25112034-25112053 Msa0322480:CDS 50.0%
TATGGGGTGGAAGTTGAGGT+AGG + chr2_4:25112038-25112057 Msa0322480:intron 50.0%
ATGGGGTGGAAGTTGAGGTA+GGG + chr2_4:25112039-25112058 Msa0322480:intron 50.0%
TCCGGGAAGTCTCTGAGTAT+TGG + chr2_4:25112265-25112284 Msa0322480:intron 50.0%
CAGATATTTGCCGCGGTCAT+TGG + chr2_4:25113060-25113079 Msa0322480:intron 50.0%
TCCCCTTTGGTATGCATGGT+AGG + chr2_4:25114231-25114250 Msa0322480:intron 50.0%
CTAGCCTGTCTCCCAATACA+GGG - chr2_4:25114851-25114870 None:intergenic 50.0%
TCTAGCCTGTCTCCCAATAC+AGG - chr2_4:25114852-25114871 None:intergenic 50.0%
! AATGCGAAAGCAGGAGGTGC+AGG + chr2_4:25108300-25108319 Msa0322480:CDS 55.0%
!! AATTTGACTCGGCCCACGCT+AGG + chr2_4:25108989-25109008 Msa0322480:intron 55.0%
CGCCGCATATCACGAGATTG+TGG - chr2_4:25109955-25109974 None:intergenic 55.0%
GTGCCGTGTAACCCGTGTTA+TGG + chr2_4:25110587-25110606 Msa0322480:intron 55.0%
TTCCCTAGGTGTGTCGAGTC+AGG + chr2_4:25111693-25111712 Msa0322480:intron 55.0%
! CACCTGACTCGACACACCTA+GGG - chr2_4:25111698-25111717 None:intergenic 55.0%
! ACACCTGACTCGACACACCT+AGG - chr2_4:25111699-25111718 None:intergenic 55.0%
GTTGCATCAGGAGCAGCTTC+AGG + chr2_4:25111963-25111982 Msa0322480:CDS 55.0%
GTATGAGGTTGGGGGTCCAA+AGG + chr2_4:25111998-25112017 Msa0322480:CDS 55.0%
TGGGGTGGAAGTTGAGGTAG+GGG + chr2_4:25112040-25112059 Msa0322480:intron 55.0%
ACTCAGAGACTTCCCGGACT+TGG - chr2_4:25112263-25112282 None:intergenic 55.0%
CTCGACACACTCCCTCCTAT+TGG + chr2_4:25112828-25112847 Msa0322480:intron 55.0%
TGGCAGCTGCACCAAATGCA+AGG - chr2_4:25113386-25113405 None:intergenic 55.0%
!! ATTTGGTGCAGCTGCCAGCA+TGG + chr2_4:25113389-25113408 Msa0322480:intron 55.0%
GACAATGTCATGCCTGTGGC+TGG - chr2_4:25113420-25113439 None:intergenic 55.0%
GGTACCCTGTATTGGGAGAC+AGG + chr2_4:25114844-25114863 Msa0322480:three_prime_UTR 55.0%
GCAGCTAGAGCAAGACCAGC+AGG - chr2_4:25110962-25110981 None:intergenic 60.0%
GGGGTGGAAGTTGAGGTAGG+GGG + chr2_4:25112041-25112060 Msa0322480:intron 60.0%
TGGAAGTTGAGGTAGGGGGC+TGG + chr2_4:25112045-25112064 Msa0322480:intron 60.0%
TGTGGCTGGATGCACCATGC+TGG - chr2_4:25113406-25113425 None:intergenic 60.0%
AGCATGGTGCATCCAGCCAC+AGG + chr2_4:25113405-25113424 Msa0322480:intron 60.0%
TCCACCCTCACGCCTAGCGT+GGG - chr2_4:25109004-25109023 None:intergenic 65.0%
ATCCACCCTCACGCCTAGCG+TGG - chr2_4:25109005-25109024 None:intergenic 65.0%
!! TGAGGTAGGGGGCTGGCTCT+TGG + chr2_4:25112052-25112071 Msa0322480:intron 65.0%
!! GAGGTAGGGGGCTGGCTCTT+GGG + chr2_4:25112053-25112072 Msa0322480:intron 65.0%
TCGGCCCACGCTAGGCGTGA+GGG + chr2_4:25108997-25109016 Msa0322480:intron 70.0%
CTCGGCCCACGCTAGGCGTG+AGG + chr2_4:25108996-25109015 Msa0322480:intron 75.0%
GCCCACGCTAGGCGTGAGGG+TGG + chr2_4:25109000-25109019 Msa0322480:intron 75.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 25108028 25114997 25108028 ID=Msa0322480;Name=Msa0322480
chr2_4 mRNA 25108028 25114997 25108028 ID=Msa0322480-mRNA-1;Parent=Msa0322480;Name=Msa0322480-mRNA-1;_AED=0.10;_eAED=0.10;_QI=131|0.77|0.9|1|0.88|0.9|10|184|485
chr2_4 exon 25108028 25108458 25108028 ID=Msa0322480-mRNA-1:exon:8958;Parent=Msa0322480-mRNA-1
chr2_4 exon 25110902 25111073 25110902 ID=Msa0322480-mRNA-1:exon:8959;Parent=Msa0322480-mRNA-1
chr2_4 exon 25111454 25111589 25111454 ID=Msa0322480-mRNA-1:exon:8960;Parent=Msa0322480-mRNA-1
chr2_4 exon 25111701 25111811 25111701 ID=Msa0322480-mRNA-1:exon:8961;Parent=Msa0322480-mRNA-1
chr2_4 exon 25111953 25112055 25111953 ID=Msa0322480-mRNA-1:exon:8962;Parent=Msa0322480-mRNA-1
chr2_4 exon 25112421 25112564 25112421 ID=Msa0322480-mRNA-1:exon:8963;Parent=Msa0322480-mRNA-1
chr2_4 exon 25113330 25113393 25113330 ID=Msa0322480-mRNA-1:exon:8964;Parent=Msa0322480-mRNA-1
chr2_4 exon 25113506 25113634 25113506 ID=Msa0322480-mRNA-1:exon:8965;Parent=Msa0322480-mRNA-1
chr2_4 exon 25113878 25114010 25113878 ID=Msa0322480-mRNA-1:exon:8966;Parent=Msa0322480-mRNA-1
chr2_4 exon 25114648 25114997 25114648 ID=Msa0322480-mRNA-1:exon:8967;Parent=Msa0322480-mRNA-1
chr2_4 five_prime_UTR 25108028 25108158 25108028 ID=Msa0322480-mRNA-1:five_prime_utr;Parent=Msa0322480-mRNA-1
chr2_4 CDS 25108159 25108458 25108159 ID=Msa0322480-mRNA-1:cds;Parent=Msa0322480-mRNA-1
chr2_4 CDS 25110902 25111073 25110902 ID=Msa0322480-mRNA-1:cds;Parent=Msa0322480-mRNA-1
chr2_4 CDS 25111454 25111589 25111454 ID=Msa0322480-mRNA-1:cds;Parent=Msa0322480-mRNA-1
chr2_4 CDS 25111701 25111811 25111701 ID=Msa0322480-mRNA-1:cds;Parent=Msa0322480-mRNA-1
chr2_4 CDS 25111953 25112055 25111953 ID=Msa0322480-mRNA-1:cds;Parent=Msa0322480-mRNA-1
chr2_4 CDS 25112421 25112564 25112421 ID=Msa0322480-mRNA-1:cds;Parent=Msa0322480-mRNA-1
chr2_4 CDS 25113330 25113393 25113330 ID=Msa0322480-mRNA-1:cds;Parent=Msa0322480-mRNA-1
chr2_4 CDS 25113506 25113634 25113506 ID=Msa0322480-mRNA-1:cds;Parent=Msa0322480-mRNA-1
chr2_4 CDS 25113878 25114010 25113878 ID=Msa0322480-mRNA-1:cds;Parent=Msa0322480-mRNA-1
chr2_4 CDS 25114648 25114813 25114648 ID=Msa0322480-mRNA-1:cds;Parent=Msa0322480-mRNA-1
chr2_4 three_prime_UTR 25114814 25114997 25114814 ID=Msa0322480-mRNA-1:three_prime_utr;Parent=Msa0322480-mRNA-1
Gene Sequence

>Msa0322480

ATGGAGTGCGTTGGAGCGAGAAACTTAACGGCAATGGCGTTTTGCATAAGTCCTTCTTTGCGGTTAAGAAGAAAGAAGATTTGTTGGAGAAGAAGAGAAGTTTCGTCGAACGCAGCAATTCGGTTGCGTTCGATGAAAGTGAATGCGAAAGCAGGAGGTGCAGGAAGTGAGAGTTGTGTCGTTGCTAAAGAGGATTATGCTGATGAGGAGGATTTTGTTAAGGCTGGTGGTTCTGAACTTGTTTTTGTTCAAATGCAGCAGAAAAAGTCTATGGATATGCAATCTAAGCTTGCGGATAAGTTGCCACCTATCTCTATTGGAGATGGAGTACTAGATCTAGTCGTTATTGGTTGTGGTCCTGCTGGTCTTGCTCTAGCTGCTGAATCTGGCAAGTTAGGATTAAAAGTTGGACTTATTGGTCCGGATCTCCCTTTCACAAACAACTATGGTGTGTGGGAGGACGAATTTAAAGGTCTTGGACTTGAAGGTTGTATTGAGCATGTTTGGAAGGATACCGTTGTATGTATTGATAATAAAAATCCCATTTCAATTGGACGTTCTTATGGCCGTGTCAGTCGGCATTTGCTTCACGAAGAATTGTTAAGAAGGTGTGTCGAGTCAGGTGTCTCGTATCTTGGCTCAAAAGTAGAAAGGATTGTTGAGGCTAGCAATGGTCATAATCATGTTGTCTGTGAATATGATACTGTAGTGCCCTGCAGGCTTGCTACTGTTGCATCAGGAGCAGCTTCAGGGAAACTATTGCAGTATGAGGTTGGGGGTCCAAAGGTGTGTGTACAAACAGCTTATGGGGTGGAAGTTGAGGTTGAAAACAGTCCTTATGATCCAAACGTGATGGTTTTCATGGATTACAGAGATTATATGAAGAACAATGTTCAAACTCTAGAAGCTAAATATCCAACATTTCTTTATGCAATGCCCATGTCTCATACAAAAGTGTTCTTTGAGGAATGGTCTTATATCCCAGTTGGTGGATCCTTACCAAACACAGAACAGAAGAACCTTGCATTTGGCTACTCTGTTGTGAGATCGTTGTCGGAAGCTCCGCAATATGCTTCAGTAATTGCTACAATTTTGAATGACGGTAATGCAAGGGACATTATTACTTATGGAAGAAGTAAGGAGAATCCATCAATGCGAGCTTGGAATACACTTTGGCCACAAGAAAGGAAACGACAGAGATCTTTCTTTCTTTTTGGATTAGCACTAATTGTTCAGCTGGACATTGAAGGCACTAGAACATTCTTCCGTACTTTCTTCTGCTTACCTGAGTGGATGTGGCAAGGATTTCTTGGTTCTTCTCTGTCCTCGAGAGATCTTCTATTGTTTGCACTTTACATGTTCATAATAGCACCAAATAACTTAAGAATGTCTCTAGTCAGACATCTGCTTTCAGATCCTACAGGGTCAACTATGATAAAAACCTACTTGACGATATAG

Protein sequence

>Msa0322480

MECVGARNLTAMAFCISPSLRLRRKKICWRRREVSSNAAIRLRSMKVNAKAGGAGSESCVVAKEDYADEEDFVKAGGSELVFVQMQQKKSMDMQSKLADKLPPISIGDGVLDLVVIGCGPAGLALAAESGKLGLKVGLIGPDLPFTNNYGVWEDEFKGLGLEGCIEHVWKDTVVCIDNKNPISIGRSYGRVSRHLLHEELLRRCVESGVSYLGSKVERIVEASNGHNHVVCEYDTVVPCRLATVASGAASGKLLQYEVGGPKVCVQTAYGVEVEVENSPYDPNVMVFMDYRDYMKNNVQTLEAKYPTFLYAMPMSHTKVFFEEWSYIPVGGSLPNTEQKNLAFGYSVVRSLSEAPQYASVIATILNDGNARDIITYGRSKENPSMRAWNTLWPQERKRQRSFFLFGLALIVQLDIEGTRTFFRTFFCLPEWMWQGFLGSSLSSRDLLLFALYMFIIAPNNLRMSLVRHLLSDPTGSTMIKTYLTI*