AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0340480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0340480 MtrunA17_Chr2g0330071 86.957 138 6 2 1 136 1 128 5.69e-83 239
Msa0340480 MtrunA17_Chr8g0342581 56.522 138 49 4 1 136 1 129 1.26e-44 142
Msa0340480 MtrunA17_Chr2g0299651 49.275 69 30 2 68 136 4 67 4.41e-18 72.8
Msa0340480 MtrunA17_Chr3g0123851 42.667 75 27 2 78 136 47 121 2.66e-14 64.7
Msa0340480 MtrunA17_Chr3g0140691 43.478 69 28 1 79 136 30 98 5.44e-12 58.2
Msa0340480 MtrunA17_Chr8g0381891 36.634 101 40 5 52 136 31 123 6.11e-12 58.5
Msa0340480 MtrunA17_Chr5g0400761 32.258 93 50 3 56 136 40 131 1.62e-11 57.8
Msa0340480 MtrunA17_Chr4g0054461 41.429 70 29 2 79 136 33 102 6.20e-11 55.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0340480 AT3G13898.1 37.692 130 66 4 2 131 8 122 7.64e-20 79.3
Msa0340480 AT5G10310.2 36.842 76 30 1 79 136 53 128 9.29e-12 58.5
Msa0340480 AT5G10310.1 36.842 76 30 1 79 136 47 122 1.12e-11 58.2

Find 62 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTTGCATTTCCAGCTTTC+AGG 0.104695 2_4:+61839321 None:intergenic
TAAAAGGGTGCTGCTATATT+TGG 0.170117 2_4:+61840330 None:intergenic
CTCTCTCAAATCAATCTAAA+AGG 0.184926 2_4:+61840314 None:intergenic
AAATCCAATGTTATTGTTAT+AGG 0.209579 2_4:-61840257 Msa0340480:five_prime_UTR
TGATTTCTTTCTTCTGTATA+TGG 0.214760 2_4:-61840518 Msa0340480:five_prime_UTR
GATTGATTTGAGAGAGAAAT+AGG 0.222750 2_4:-61840307 Msa0340480:five_prime_UTR
CTCTTACTGCTTTCAGTACT+TGG 0.230569 2_4:+61839378 None:intergenic
TTAAATGAAGGGTTATAATA+TGG 0.242766 2_4:-61839544 Msa0340480:intron
GTTCTGTATCTGTAGCTAAA+AGG 0.270536 2_4:-61839883 Msa0340480:CDS
ATAGGTGTATAGACTCAAAA+TGG 0.280341 2_4:-61840380 Msa0340480:five_prime_UTR
TACAAGCACACAAGTGATTC+TGG 0.292666 2_4:+61840139 None:intergenic
GTATATGATGATAGAGATAT+TGG 0.298483 2_4:-61839486 Msa0340480:CDS
GTATAAGATAAGATAATTAT+AGG 0.318328 2_4:-61840398 Msa0340480:five_prime_UTR
ACAAAACAATCTTCCTTTCA+TGG 0.318884 2_4:+61839931 None:intergenic
TGTGGTGCTGGTGCCTCTGC+AGG 0.326587 2_4:+61839661 None:intergenic
CAGACTAGTCTTATAGTCTT+AGG 0.327894 2_4:-61840222 Msa0340480:five_prime_UTR
AACTTTAATATTTGTACAAA+GGG 0.386824 2_4:+61839185 None:intergenic
GGGATAAACAGCAACAAGAT+AGG 0.397126 2_4:-61839465 Msa0340480:CDS
TAGTATATAGTTCATCTGTT+AGG 0.403533 2_4:-61839230 Msa0340480:three_prime_UTR
TCTATGGTTTGGTGTGGTGC+TGG 0.410248 2_4:+61839649 None:intergenic
GAATGATCATGGACTGTAGA+AGG 0.411333 2_4:+61839290 None:intergenic
AATGTTATTGTTATAGGCAG+TGG 0.439134 2_4:-61840251 Msa0340480:five_prime_UTR
TTCTGTATCTGTAGCTAAAA+GGG 0.447484 2_4:-61839882 Msa0340480:CDS
GAACTATATACTACATTGAA+TGG 0.458537 2_4:+61839240 None:intergenic
AGACTAGTATATATATAAGA+AGG 0.463401 2_4:+61840063 None:intergenic
AGCTGTGAGCACAAATGTTA+TGG 0.466115 2_4:-61839429 Msa0340480:CDS
TATATGATGATAGAGATATT+GGG 0.480867 2_4:-61839485 Msa0340480:CDS
TCTCTCAAATCAATCTAAAA+GGG 0.481157 2_4:+61840315 None:intergenic
AGCAATAATCATCACACCTT+AGG 0.491997 2_4:-61840033 Msa0340480:five_prime_UTR
CAAATTATGAGCCTGAAAGC+TGG 0.493311 2_4:-61839332 Msa0340480:CDS
ATTTGAGAGAGAAATAGGTT+TGG 0.493881 2_4:-61840302 Msa0340480:five_prime_UTR
TGGGACATTGCATCAGTTGA+AGG 0.495489 2_4:+61839854 None:intergenic
AAATCAAATCATCAATGGTA+TGG 0.503398 2_4:+61840535 None:intergenic
AAAGGCTATGCATGCAGTCT+AGG 0.505491 2_4:-61840453 Msa0340480:five_prime_UTR
GTGGTGCTGGTGCCTCTGCA+GGG 0.506744 2_4:+61839662 None:intergenic
TAGGTTTGGCTTGTATTGAA+AGG 0.507147 2_4:-61840288 Msa0340480:five_prime_UTR
ATTAGAATATAGAATGATCA+TGG 0.510359 2_4:+61839279 None:intergenic
TCATTTGTGCTTACCATGAA+AGG 0.510743 2_4:-61839944 Msa0340480:exon
AAGAGAAAGTATTAAGTCAG+AGG 0.511752 2_4:-61839520 Msa0340480:CDS
GTACAAATATTAAAGTTCAA+AGG 0.517465 2_4:-61839179 Msa0340480:three_prime_UTR
TATATAAGAAGGGAGTGAAA+AGG 0.519468 2_4:+61840074 None:intergenic
GAAAGAAATCAAATCATCAA+TGG 0.522503 2_4:+61840530 None:intergenic
GACTAGTATATATATAAGAA+GGG 0.527280 2_4:+61840064 None:intergenic
TAACATTTGTGCTCACAGCT+TGG 0.529187 2_4:+61839432 None:intergenic
GGATAAACAGCAACAAGATA+GGG 0.530561 2_4:-61839464 Msa0340480:CDS
CATTTGTGCTCACAGCTTGG+TGG 0.531481 2_4:+61839435 None:intergenic
GGAACTTGAATTGCTTCACA+TGG 0.532642 2_4:+61839399 None:intergenic
GAACTTTAATATTTGTACAA+AGG 0.536110 2_4:+61839184 None:intergenic
TGCTAGTTAACTAACCTGGA+TGG 0.543651 2_4:+61839834 None:intergenic
AAAAGATGCAATGCAACCTA+AGG 0.544753 2_4:+61840017 None:intergenic
TCTTAGGAGTTGTCAAATGA+AGG 0.546238 2_4:-61840206 Msa0340480:five_prime_UTR
TAGGTGTATAGACTCAAAAT+GGG 0.566231 2_4:-61840379 Msa0340480:five_prime_UTR
ACTGATGCAATGTCCCATCC+AGG 0.569419 2_4:-61839848 Msa0340480:intron
ACTGCCTATAACAATAACAT+TGG 0.570276 2_4:+61840253 None:intergenic
GCTCATAATTTGCATACTGA+AGG 0.575953 2_4:+61839343 None:intergenic
GCTAGTTAACTAACCTGGAT+GGG 0.589120 2_4:+61839835 None:intergenic
TTTGACTCTATGGTTTGGTG+TGG 0.597650 2_4:+61839643 None:intergenic
GATCATGGACTGTAGAAGGA+AGG 0.607875 2_4:+61839294 None:intergenic
GAAAGCTGGAAATGCAAATG+CGG 0.634798 2_4:-61839318 Msa0340480:CDS
AGACAGTAACTAAAAGACAA+AGG 0.650742 2_4:-61840471 Msa0340480:five_prime_UTR
ACTTTAATATTTGTACAAAG+GGG 0.672524 2_4:+61839186 None:intergenic
TATATGATTAGGCCCTGCAG+AGG 0.691719 2_4:-61839674 Msa0340480:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATCTTATATCTATAAAAA+TGG + chr2_4:61839919-61839938 None:intergenic 10.0%
!! TTATCTTATATCTATAAAAA+TGG + chr2_4:61839919-61839938 None:intergenic 10.0%
!! GTATAAGATAAGATAATTAT+AGG - chr2_4:61839327-61839346 Msa0340480:CDS 15.0%
!! CTTAAAAATACTAATGATTA+AGG + chr2_4:61839992-61840011 None:intergenic 15.0%
!!! CTTAATCATTAGTATTTTTA+AGG - chr2_4:61839990-61840009 Msa0340480:five_prime_UTR 15.0%
!!! AATACTTGTATTTTAAATGA+AGG - chr2_4:61840169-61840188 Msa0340480:five_prime_UTR 15.0%
!!! ATACTTGTATTTTAAATGAA+GGG - chr2_4:61840170-61840189 Msa0340480:five_prime_UTR 15.0%
!! AACTTTAATATTTGTACAAA+GGG + chr2_4:61840543-61840562 None:intergenic 15.0%
!! GTATAAGATAAGATAATTAT+AGG - chr2_4:61839327-61839346 Msa0340480:CDS 15.0%
!! CTTAAAAATACTAATGATTA+AGG + chr2_4:61839992-61840011 None:intergenic 15.0%
!!! CTTAATCATTAGTATTTTTA+AGG - chr2_4:61839990-61840009 Msa0340480:five_prime_UTR 15.0%
!!! AATACTTGTATTTTAAATGA+AGG - chr2_4:61840169-61840188 Msa0340480:five_prime_UTR 15.0%
!!! ATACTTGTATTTTAAATGAA+GGG - chr2_4:61840170-61840189 Msa0340480:five_prime_UTR 15.0%
!! AACTTTAATATTTGTACAAA+GGG + chr2_4:61840543-61840562 None:intergenic 15.0%
!! AAATCCAATGTTATTGTTAT+AGG - chr2_4:61839468-61839487 Msa0340480:CDS 20.0%
!! GACTAGTATATATATAAGAA+GGG + chr2_4:61839664-61839683 None:intergenic 20.0%
!! AGACTAGTATATATATAAGA+AGG + chr2_4:61839665-61839684 None:intergenic 20.0%
!! CTTCATTTGTATATATGATT+AGG - chr2_4:61840040-61840059 Msa0340480:five_prime_UTR 20.0%
!! CTTCTAACATTATGTAAATT+TGG - chr2_4:61840115-61840134 Msa0340480:five_prime_UTR 20.0%
!! TTAAATGAAGGGTTATAATA+TGG - chr2_4:61840181-61840200 Msa0340480:five_prime_UTR 20.0%
!! TATATGATGATAGAGATATT+GGG - chr2_4:61840240-61840259 Msa0340480:five_prime_UTR 20.0%
!! ATTAGAATATAGAATGATCA+TGG + chr2_4:61840449-61840468 None:intergenic 20.0%
!! ACTTTAATATTTGTACAAAG+GGG + chr2_4:61840542-61840561 None:intergenic 20.0%
!! GAACTTTAATATTTGTACAA+AGG + chr2_4:61840544-61840563 None:intergenic 20.0%
!! GTACAAATATTAAAGTTCAA+AGG - chr2_4:61840546-61840565 Msa0340480:five_prime_UTR 20.0%
!! AAATCCAATGTTATTGTTAT+AGG - chr2_4:61839468-61839487 Msa0340480:CDS 20.0%
!! GACTAGTATATATATAAGAA+GGG + chr2_4:61839664-61839683 None:intergenic 20.0%
!! AGACTAGTATATATATAAGA+AGG + chr2_4:61839665-61839684 None:intergenic 20.0%
!! CTTCATTTGTATATATGATT+AGG - chr2_4:61840040-61840059 Msa0340480:five_prime_UTR 20.0%
!! CTTCTAACATTATGTAAATT+TGG - chr2_4:61840115-61840134 Msa0340480:five_prime_UTR 20.0%
!! TTAAATGAAGGGTTATAATA+TGG - chr2_4:61840181-61840200 Msa0340480:five_prime_UTR 20.0%
!! TATATGATGATAGAGATATT+GGG - chr2_4:61840240-61840259 Msa0340480:five_prime_UTR 20.0%
!! ATTAGAATATAGAATGATCA+TGG + chr2_4:61840449-61840468 None:intergenic 20.0%
!! ACTTTAATATTTGTACAAAG+GGG + chr2_4:61840542-61840561 None:intergenic 20.0%
!! GAACTTTAATATTTGTACAA+AGG + chr2_4:61840544-61840563 None:intergenic 20.0%
!! GTACAAATATTAAAGTTCAA+AGG - chr2_4:61840546-61840565 Msa0340480:five_prime_UTR 20.0%
! AAATCAAATCATCAATGGTA+TGG + chr2_4:61839193-61839212 None:intergenic 25.0%
! GAAAGAAATCAAATCATCAA+TGG + chr2_4:61839198-61839217 None:intergenic 25.0%
! TGATTTCTTTCTTCTGTATA+TGG - chr2_4:61839207-61839226 Msa0340480:three_prime_UTR 25.0%
! TCTCTCAAATCAATCTAAAA+GGG + chr2_4:61839413-61839432 None:intergenic 25.0%
!! ATCTTAAACAGTCATCTTTT+TGG - chr2_4:61839616-61839635 Msa0340480:intron 25.0%
!! TCTTAAACAGTCATCTTTTT+GGG - chr2_4:61839617-61839636 Msa0340480:intron 25.0%
! GTATATGATGATAGAGATAT+TGG - chr2_4:61840239-61840258 Msa0340480:five_prime_UTR 25.0%
! GAACTATATACTACATTGAA+TGG + chr2_4:61840488-61840507 None:intergenic 25.0%
! TAGTATATAGTTCATCTGTT+AGG - chr2_4:61840495-61840514 Msa0340480:five_prime_UTR 25.0%
! AAATCAAATCATCAATGGTA+TGG + chr2_4:61839193-61839212 None:intergenic 25.0%
! GAAAGAAATCAAATCATCAA+TGG + chr2_4:61839198-61839217 None:intergenic 25.0%
! TGATTTCTTTCTTCTGTATA+TGG - chr2_4:61839207-61839226 Msa0340480:three_prime_UTR 25.0%
! TCTCTCAAATCAATCTAAAA+GGG + chr2_4:61839413-61839432 None:intergenic 25.0%
!! ATCTTAAACAGTCATCTTTT+TGG - chr2_4:61839616-61839635 Msa0340480:intron 25.0%
!! TCTTAAACAGTCATCTTTTT+GGG - chr2_4:61839617-61839636 Msa0340480:intron 25.0%
! GTATATGATGATAGAGATAT+TGG - chr2_4:61840239-61840258 Msa0340480:five_prime_UTR 25.0%
! GAACTATATACTACATTGAA+TGG + chr2_4:61840488-61840507 None:intergenic 25.0%
! TAGTATATAGTTCATCTGTT+AGG - chr2_4:61840495-61840514 Msa0340480:five_prime_UTR 25.0%
AGACAGTAACTAAAAGACAA+AGG - chr2_4:61839254-61839273 Msa0340480:three_prime_UTR 30.0%
ATAGGTGTATAGACTCAAAA+TGG - chr2_4:61839345-61839364 Msa0340480:CDS 30.0%
TAGGTGTATAGACTCAAAAT+GGG - chr2_4:61839346-61839365 Msa0340480:CDS 30.0%
CTCTCTCAAATCAATCTAAA+AGG + chr2_4:61839414-61839433 None:intergenic 30.0%
!! GATTGATTTGAGAGAGAAAT+AGG - chr2_4:61839418-61839437 Msa0340480:CDS 30.0%
ATTTGAGAGAGAAATAGGTT+TGG - chr2_4:61839423-61839442 Msa0340480:CDS 30.0%
ACTGCCTATAACAATAACAT+TGG + chr2_4:61839475-61839494 None:intergenic 30.0%
AATGTTATTGTTATAGGCAG+TGG - chr2_4:61839474-61839493 Msa0340480:CDS 30.0%
TATATAAGAAGGGAGTGAAA+AGG + chr2_4:61839654-61839673 None:intergenic 30.0%
! TGCATTGCATCTTTTTCTAA+AGG - chr2_4:61839716-61839735 Msa0340480:intron 30.0%
! GCATTGCATCTTTTTCTAAA+GGG - chr2_4:61839717-61839736 Msa0340480:intron 30.0%
ACAAAACAATCTTCCTTTCA+TGG + chr2_4:61839797-61839816 None:intergenic 30.0%
TTCTGTATCTGTAGCTAAAA+GGG - chr2_4:61839843-61839862 Msa0340480:intron 30.0%
CTTGAATTATTTGACCTTAG+AGG - chr2_4:61839960-61839979 Msa0340480:five_prime_UTR 30.0%
!! AAGAGAAAGTATTAAGTCAG+AGG - chr2_4:61840205-61840224 Msa0340480:five_prime_UTR 30.0%
AGACAGTAACTAAAAGACAA+AGG - chr2_4:61839254-61839273 Msa0340480:three_prime_UTR 30.0%
ATAGGTGTATAGACTCAAAA+TGG - chr2_4:61839345-61839364 Msa0340480:CDS 30.0%
TAGGTGTATAGACTCAAAAT+GGG - chr2_4:61839346-61839365 Msa0340480:CDS 30.0%
CTCTCTCAAATCAATCTAAA+AGG + chr2_4:61839414-61839433 None:intergenic 30.0%
!! GATTGATTTGAGAGAGAAAT+AGG - chr2_4:61839418-61839437 Msa0340480:CDS 30.0%
ATTTGAGAGAGAAATAGGTT+TGG - chr2_4:61839423-61839442 Msa0340480:CDS 30.0%
ACTGCCTATAACAATAACAT+TGG + chr2_4:61839475-61839494 None:intergenic 30.0%
AATGTTATTGTTATAGGCAG+TGG - chr2_4:61839474-61839493 Msa0340480:CDS 30.0%
TATATAAGAAGGGAGTGAAA+AGG + chr2_4:61839654-61839673 None:intergenic 30.0%
! TGCATTGCATCTTTTTCTAA+AGG - chr2_4:61839716-61839735 Msa0340480:intron 30.0%
! GCATTGCATCTTTTTCTAAA+GGG - chr2_4:61839717-61839736 Msa0340480:intron 30.0%
ACAAAACAATCTTCCTTTCA+TGG + chr2_4:61839797-61839816 None:intergenic 30.0%
TTCTGTATCTGTAGCTAAAA+GGG - chr2_4:61839843-61839862 Msa0340480:intron 30.0%
CTTGAATTATTTGACCTTAG+AGG - chr2_4:61839960-61839979 Msa0340480:five_prime_UTR 30.0%
!! AAGAGAAAGTATTAAGTCAG+AGG - chr2_4:61840205-61840224 Msa0340480:five_prime_UTR 30.0%
!! TAAAAGGGTGCTGCTATATT+TGG + chr2_4:61839398-61839417 None:intergenic 35.0%
!! TAGGTTTGGCTTGTATTGAA+AGG - chr2_4:61839437-61839456 Msa0340480:CDS 35.0%
!! CAGACTAGTCTTATAGTCTT+AGG - chr2_4:61839503-61839522 Msa0340480:CDS 35.0%
TCTTAGGAGTTGTCAAATGA+AGG - chr2_4:61839519-61839538 Msa0340480:CDS 35.0%
AGCAATAATCATCACACCTT+AGG - chr2_4:61839692-61839711 Msa0340480:intron 35.0%
AAAAGATGCAATGCAACCTA+AGG + chr2_4:61839711-61839730 None:intergenic 35.0%
TCATTTGTGCTTACCATGAA+AGG - chr2_4:61839781-61839800 Msa0340480:intron 35.0%
GTTCTGTATCTGTAGCTAAA+AGG - chr2_4:61839842-61839861 Msa0340480:intron 35.0%
!!! CCTTTTTTGACTCTATGGTT+TGG + chr2_4:61840090-61840109 None:intergenic 35.0%
CCAAACCATAGAGTCAAAAA+AGG - chr2_4:61840087-61840106 Msa0340480:five_prime_UTR 35.0%
!!! ACACACCTTTTTTGACTCTA+TGG + chr2_4:61840095-61840114 None:intergenic 35.0%
GGATAAACAGCAACAAGATA+GGG - chr2_4:61840261-61840280 Msa0340480:five_prime_UTR 35.0%
! GCTCATAATTTGCATACTGA+AGG + chr2_4:61840385-61840404 None:intergenic 35.0%
!! TAAAAGGGTGCTGCTATATT+TGG + chr2_4:61839398-61839417 None:intergenic 35.0%
!! TAGGTTTGGCTTGTATTGAA+AGG - chr2_4:61839437-61839456 Msa0340480:CDS 35.0%
!! CAGACTAGTCTTATAGTCTT+AGG - chr2_4:61839503-61839522 Msa0340480:CDS 35.0%
TCTTAGGAGTTGTCAAATGA+AGG - chr2_4:61839519-61839538 Msa0340480:CDS 35.0%
AGCAATAATCATCACACCTT+AGG - chr2_4:61839692-61839711 Msa0340480:intron 35.0%
AAAAGATGCAATGCAACCTA+AGG + chr2_4:61839711-61839730 None:intergenic 35.0%
TCATTTGTGCTTACCATGAA+AGG - chr2_4:61839781-61839800 Msa0340480:intron 35.0%
GTTCTGTATCTGTAGCTAAA+AGG - chr2_4:61839842-61839861 Msa0340480:intron 35.0%
!!! CCTTTTTTGACTCTATGGTT+TGG + chr2_4:61840090-61840109 None:intergenic 35.0%
CCAAACCATAGAGTCAAAAA+AGG - chr2_4:61840087-61840106 Msa0340480:five_prime_UTR 35.0%
!!! ACACACCTTTTTTGACTCTA+TGG + chr2_4:61840095-61840114 None:intergenic 35.0%
GGATAAACAGCAACAAGATA+GGG - chr2_4:61840261-61840280 Msa0340480:five_prime_UTR 35.0%
! GCTCATAATTTGCATACTGA+AGG + chr2_4:61840385-61840404 None:intergenic 35.0%
TACAAGCACACAAGTGATTC+TGG + chr2_4:61839589-61839608 None:intergenic 40.0%
GCTAGTTAACTAACCTGGAT+GGG + chr2_4:61839893-61839912 None:intergenic 40.0%
TGCTAGTTAACTAACCTGGA+TGG + chr2_4:61839894-61839913 None:intergenic 40.0%
GATTAAGGTCTAAGCCTCTA+AGG + chr2_4:61839977-61839996 None:intergenic 40.0%
!! TTTGACTCTATGGTTTGGTG+TGG + chr2_4:61840085-61840104 None:intergenic 40.0%
GGGATAAACAGCAACAAGAT+AGG - chr2_4:61840260-61840279 Msa0340480:five_prime_UTR 40.0%
TAACATTTGTGCTCACAGCT+TGG + chr2_4:61840296-61840315 None:intergenic 40.0%
AGCTGTGAGCACAAATGTTA+TGG - chr2_4:61840296-61840315 Msa0340480:five_prime_UTR 40.0%
GGAACTTGAATTGCTTCACA+TGG + chr2_4:61840329-61840348 None:intergenic 40.0%
CTCTTACTGCTTTCAGTACT+TGG + chr2_4:61840350-61840369 None:intergenic 40.0%
CAAATTATGAGCCTGAAAGC+TGG - chr2_4:61840393-61840412 Msa0340480:five_prime_UTR 40.0%
CATTTGCATTTCCAGCTTTC+AGG + chr2_4:61840407-61840426 None:intergenic 40.0%
GAAAGCTGGAAATGCAAATG+CGG - chr2_4:61840407-61840426 Msa0340480:five_prime_UTR 40.0%
! GAATGATCATGGACTGTAGA+AGG + chr2_4:61840438-61840457 None:intergenic 40.0%
TACAAGCACACAAGTGATTC+TGG + chr2_4:61839589-61839608 None:intergenic 40.0%
GCTAGTTAACTAACCTGGAT+GGG + chr2_4:61839893-61839912 None:intergenic 40.0%
TGCTAGTTAACTAACCTGGA+TGG + chr2_4:61839894-61839913 None:intergenic 40.0%
GATTAAGGTCTAAGCCTCTA+AGG + chr2_4:61839977-61839996 None:intergenic 40.0%
!! TTTGACTCTATGGTTTGGTG+TGG + chr2_4:61840085-61840104 None:intergenic 40.0%
GGGATAAACAGCAACAAGAT+AGG - chr2_4:61840260-61840279 Msa0340480:five_prime_UTR 40.0%
TAACATTTGTGCTCACAGCT+TGG + chr2_4:61840296-61840315 None:intergenic 40.0%
AGCTGTGAGCACAAATGTTA+TGG - chr2_4:61840296-61840315 Msa0340480:five_prime_UTR 40.0%
GGAACTTGAATTGCTTCACA+TGG + chr2_4:61840329-61840348 None:intergenic 40.0%
CTCTTACTGCTTTCAGTACT+TGG + chr2_4:61840350-61840369 None:intergenic 40.0%
CAAATTATGAGCCTGAAAGC+TGG - chr2_4:61840393-61840412 Msa0340480:five_prime_UTR 40.0%
CATTTGCATTTCCAGCTTTC+AGG + chr2_4:61840407-61840426 None:intergenic 40.0%
GAAAGCTGGAAATGCAAATG+CGG - chr2_4:61840407-61840426 Msa0340480:five_prime_UTR 40.0%
! GAATGATCATGGACTGTAGA+AGG + chr2_4:61840438-61840457 None:intergenic 40.0%
AAAGGCTATGCATGCAGTCT+AGG - chr2_4:61839272-61839291 Msa0340480:three_prime_UTR 45.0%
TGGGACATTGCATCAGTTGA+AGG + chr2_4:61839874-61839893 None:intergenic 45.0%
GGTGTGCTAGTTAACTAACC+TGG + chr2_4:61839898-61839917 None:intergenic 45.0%
TATATGATTAGGCCCTGCAG+AGG - chr2_4:61840051-61840070 Msa0340480:five_prime_UTR 45.0%
! GATCATGGACTGTAGAAGGA+AGG + chr2_4:61840434-61840453 None:intergenic 45.0%
AAAGGCTATGCATGCAGTCT+AGG - chr2_4:61839272-61839291 Msa0340480:three_prime_UTR 45.0%
TGGGACATTGCATCAGTTGA+AGG + chr2_4:61839874-61839893 None:intergenic 45.0%
GGTGTGCTAGTTAACTAACC+TGG + chr2_4:61839898-61839917 None:intergenic 45.0%
TATATGATTAGGCCCTGCAG+AGG - chr2_4:61840051-61840070 Msa0340480:five_prime_UTR 45.0%
! GATCATGGACTGTAGAAGGA+AGG + chr2_4:61840434-61840453 None:intergenic 45.0%
ACTGATGCAATGTCCCATCC+AGG - chr2_4:61839877-61839896 Msa0340480:CDS 50.0%
!! TCTATGGTTTGGTGTGGTGC+TGG + chr2_4:61840079-61840098 None:intergenic 50.0%
CATTTGTGCTCACAGCTTGG+TGG + chr2_4:61840293-61840312 None:intergenic 50.0%
ACTGATGCAATGTCCCATCC+AGG - chr2_4:61839877-61839896 Msa0340480:CDS 50.0%
!! TCTATGGTTTGGTGTGGTGC+TGG + chr2_4:61840079-61840098 None:intergenic 50.0%
CATTTGTGCTCACAGCTTGG+TGG + chr2_4:61840293-61840312 None:intergenic 50.0%
!! GTGGTGCTGGTGCCTCTGCA+GGG + chr2_4:61840066-61840085 None:intergenic 65.0%
!! TGTGGTGCTGGTGCCTCTGC+AGG + chr2_4:61840067-61840086 None:intergenic 65.0%
!! GTGGTGCTGGTGCCTCTGCA+GGG + chr2_4:61840066-61840085 None:intergenic 65.0%
!! TGTGGTGCTGGTGCCTCTGC+AGG + chr2_4:61840067-61840086 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 61839168 61840579 61839168 ID=Msa0340480;Name=Msa0340480
chr2_4 mRNA 61839168 61840579 61839168 ID=Msa0340480-mRNA-1;Parent=Msa0340480;Name=Msa0340480-mRNA-1;_AED=0.00;_eAED=0.00;_QI=628|1|1|1|1|1|3|128|136
chr2_4 exon 61839168 61839556 61839168 ID=Msa0340480-mRNA-1:exon:19579;Parent=Msa0340480-mRNA-1
chr2_4 exon 61839639 61839685 61839639 ID=Msa0340480-mRNA-1:exon:19578;Parent=Msa0340480-mRNA-1
chr2_4 exon 61839849 61840579 61839849 ID=Msa0340480-mRNA-1:exon:19577;Parent=Msa0340480-mRNA-1
chr2_4 five_prime_UTR 61839952 61840579 61839952 ID=Msa0340480-mRNA-1:five_prime_utr;Parent=Msa0340480-mRNA-1
chr2_4 CDS 61839849 61839951 61839849 ID=Msa0340480-mRNA-1:cds;Parent=Msa0340480-mRNA-1
chr2_4 CDS 61839639 61839685 61839639 ID=Msa0340480-mRNA-1:cds;Parent=Msa0340480-mRNA-1
chr2_4 CDS 61839296 61839556 61839296 ID=Msa0340480-mRNA-1:cds;Parent=Msa0340480-mRNA-1
chr2_4 three_prime_UTR 61839168 61839295 61839168 ID=Msa0340480-mRNA-1:three_prime_utr;Parent=Msa0340480-mRNA-1
Gene Sequence

>Msa0340480

ATGAAAGGAAGATTGTTTTGTTTCATTTTAGCTATGCAGTTACTGAGTTCTGTATCTGTAGCTAAAAGGGCTTTTCCTTCAACTGATGCAATGTCCCATCCAGGCCCTGCAGAGGCACCAGCACCACACCAAACCATAGAGTCAAAAAAGGGTTATAATATGGTAAGAGAAAGTATTAAGTCAGAGGAAATGAAAGAAGTATATGATGATAGAGATATTGGGATAAACAGCAACAAGATAGGGTCAAGTCCACCAAGCTGTGAGCACAAATGTTATGGATGCAATCCATGTGAAGCAATTCAAGTTCCAAGTACTGAAAGCAGTAAGAGAAATCATTTGAGCCTTCAGTATGCAAATTATGAGCCTGAAAGCTGGAAATGCAAATGCGGTCCTTCCTTCTACAGTCCATGA
Protein sequence

>Msa0340480

MKGRLFCFILAMQLLSSVSVAKRAFPSTDAMSHPGPAEAPAPHQTIESKKGYNMVRESIKSEEMKEVYDDRDIGINSNKIGSSPPSCEHKCYGCNPCEAIQVPSTESSKRNHLSLQYANYEPESWKCKCGPSFYSP*