AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0360720

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0360720 MtrunA17_Chr3g0098761 94.960 754 32 1 1 754 1 748 0.0 1477
Msa0360720 MtrunA17_Chr5g0444001 71.062 546 145 3 1 539 1 540 0.0 785
Msa0360720 MtrunA17_Chr2g0331901 50.253 792 346 7 1 750 1 786 0.0 769
Msa0360720 MtrunA17_Chr4g0004331 49.427 785 351 9 1 744 1 780 0.0 738
Msa0360720 MtrunA17_Chr3g0120101 27.525 792 486 21 2 720 25 801 1.56e-85 290
Msa0360720 MtrunA17_Chr7g0223291 28.205 663 412 13 4 662 10 612 9.59e-76 258
Msa0360720 MtrunA17_Chr4g0031301 28.186 667 413 14 4 665 10 615 4.81e-75 256
Msa0360720 MtrunA17_Chr4g0073741 27.903 663 414 14 4 662 9 611 6.56e-75 256
Msa0360720 MtrunA17_Chr7g0223181 27.903 663 414 13 4 662 10 612 1.78e-74 254
Msa0360720 MtrunA17_Chr7g0262821 33.412 425 274 4 4 425 10 428 4.58e-74 253
Msa0360720 MtrunA17_Chr4g0031321 27.736 667 416 14 4 665 10 615 1.15e-73 252
Msa0360720 MtrunA17_Chr8g0388761 26.718 655 383 14 2 636 37 614 7.20e-71 245
Msa0360720 MtrunA17_Chr6g0462601 32.553 427 279 4 4 427 10 430 2.73e-70 243
Msa0360720 MtrunA17_Chr8g0388671 27.259 642 396 14 2 636 37 614 3.09e-70 243
Msa0360720 MtrunA17_Chr6g0462771 31.628 430 280 5 4 425 10 433 4.31e-70 243
Msa0360720 MtrunA17_Chr7g0248131 34.742 426 268 5 4 424 10 430 5.91e-70 242
Msa0360720 MtrunA17_Chr7g0223701 32.944 428 277 5 4 427 10 431 1.42e-69 241
Msa0360720 MtrunA17_Chr8g0350731 33.803 426 270 7 4 424 38 456 2.45e-69 241
Msa0360720 MtrunA17_Chr7g0223711 32.706 425 276 5 4 424 10 428 1.19e-68 238
Msa0360720 MtrunA17_Chr2g0279901 34.236 406 249 5 3 403 56 448 2.86e-68 238
Msa0360720 MtrunA17_Chr7g0223751 32.235 425 278 5 4 424 10 428 2.06e-67 234
Msa0360720 MtrunA17_Chr2g0296391 32.587 402 264 5 4 400 10 409 2.78e-67 232
Msa0360720 MtrunA17_Chr7g0223031 32.471 425 277 5 4 424 10 428 3.67e-67 234
Msa0360720 MtrunA17_Chr5g0427901 31.991 447 267 10 4 427 10 442 7.27e-67 233
Msa0360720 MtrunA17_Chr2g0298851 32.000 425 280 5 4 424 10 429 8.56e-67 233
Msa0360720 MtrunA17_Chr6g0462681 32.090 402 269 3 4 402 10 410 1.94e-66 233
Msa0360720 MtrunA17_Chr6g0462711 30.754 504 317 10 4 489 11 500 3.01e-66 233
Msa0360720 MtrunA17_Chr6g0462641 31.395 430 281 4 4 425 10 433 5.62e-66 232
Msa0360720 MtrunA17_Chr2g0284681 30.858 431 283 5 4 425 9 433 5.75e-66 230
Msa0360720 MtrunA17_Chr7g0223731 32.235 425 278 5 4 424 10 428 1.25e-65 229
Msa0360720 MtrunA17_Chr4g0049501 33.005 406 255 5 3 403 53 446 1.37e-65 231
Msa0360720 MtrunA17_Chr7g0221661 32.864 426 274 8 4 424 10 428 2.47e-65 229
Msa0360720 MtrunA17_Chr2g0293581 32.319 427 275 7 4 424 11 429 3.27e-65 228
Msa0360720 MtrunA17_Chr7g0233311 33.002 403 263 5 4 401 10 410 3.77e-65 228
Msa0360720 MtrunA17_Chr7g0223781 32.944 428 269 6 4 424 10 426 7.33e-65 227
Msa0360720 MtrunA17_Chr7g0225671 29.675 492 332 8 4 489 17 500 7.87e-65 228
Msa0360720 MtrunA17_Chr2g0287631 31.603 443 291 7 4 441 10 445 2.49e-64 226
Msa0360720 MtrunA17_Chr2g0298861 30.454 463 297 8 3 446 9 465 4.20e-64 226
Msa0360720 MtrunA17_Chr4g0040931 30.986 426 282 7 4 424 10 428 3.73e-63 223
Msa0360720 MtrunA17_Chr7g0223721 30.465 430 283 7 2 424 8 428 5.08e-63 222
Msa0360720 MtrunA17_Chr7g0223851 32.000 425 280 5 4 424 19 438 1.23e-62 222
Msa0360720 MtrunA17_Chr7g0223621 30.841 428 284 6 2 424 8 428 1.45e-62 221
Msa0360720 MtrunA17_Chr7g0223741 30.417 503 322 11 4 493 10 497 4.52e-62 219
Msa0360720 MtrunA17_Chr7g0248151 31.850 427 279 6 4 425 10 429 7.82e-62 219
Msa0360720 MtrunA17_Chr2g0293601 31.172 401 271 4 4 400 10 409 5.05e-61 213
Msa0360720 MtrunA17_Chr7g0223821 31.111 405 272 5 4 403 10 412 7.25e-61 218
Msa0360720 MtrunA17_Chr7g0223801 31.860 430 272 9 4 424 10 427 8.53e-61 216
Msa0360720 MtrunA17_Chr7g0223631 32.587 402 252 5 4 401 10 396 8.73e-61 216
Msa0360720 MtrunA17_Chr2g0299921 32.982 379 250 2 4 381 1030 1405 1.55e-60 223
Msa0360720 MtrunA17_Chr2g0299921 31.161 353 239 2 4 355 1414 1763 5.16e-51 194
Msa0360720 MtrunA17_Chr5g0444011 56.684 187 72 1 566 743 1 187 5.06e-60 201
Msa0360720 MtrunA17_Chr7g0233301 31.830 399 267 4 4 398 10 407 5.93e-60 213
Msa0360720 MtrunA17_Chr7g0217971 31.266 403 248 5 4 402 10 387 1.07e-59 213
Msa0360720 MtrunA17_Chr2g0299851 32.718 379 251 2 4 381 1039 1414 3.24e-59 218
Msa0360720 MtrunA17_Chr2g0293561 30.423 378 253 3 4 372 10 386 7.20e-58 202
Msa0360720 MtrunA17_Chr2g0299791 32.454 379 252 2 4 381 1043 1418 1.70e-57 213
Msa0360720 MtrunA17_Chr2g0331381 31.148 427 258 7 2 424 5 399 9.03e-57 202
Msa0360720 MtrunA17_Chr2g0299821 28.910 422 290 4 4 416 10 430 7.15e-54 194
Msa0360720 MtrunA17_Chr6g0462611 32.641 337 225 2 68 403 24 359 7.82e-54 197
Msa0360720 MtrunA17_Chr2g0299881 31.818 396 258 4 3 391 1038 1428 1.30e-52 198
Msa0360720 MtrunA17_Chr4g0012541 29.647 425 281 6 4 424 10 420 2.36e-52 192
Msa0360720 MtrunA17_Chr7g0215261 28.302 424 261 7 4 424 10 393 1.67e-51 189
Msa0360720 MtrunA17_Chr7g0223831 28.706 425 266 6 4 424 10 401 2.31e-51 189
Msa0360720 MtrunA17_Chr2g0277021 31.527 406 262 6 3 403 71 465 7.22e-51 189
Msa0360720 MtrunA17_Chr7g0223541 32.249 338 226 3 65 400 30 366 3.16e-48 180
Msa0360720 MtrunA17_Chr7g0223681 33.429 347 217 6 83 424 2 339 1.39e-47 177
Msa0360720 MtrunA17_Chr7g0228281 31.803 305 205 2 4 306 71 374 1.43e-47 179
Msa0360720 MtrunA17_Chr1g0151991 31.273 275 186 2 4 276 10 283 1.19e-45 165
Msa0360720 MtrunA17_Chr7g0245521 31.439 264 178 3 4 265 10 272 1.32e-41 153
Msa0360720 MtrunA17_Chr6g0462861 27.295 403 273 7 4 403 10 395 5.54e-41 160
Msa0360720 MtrunA17_Chr8g0390821 27.033 455 261 11 4 403 12 450 9.74e-41 159
Msa0360720 MtrunA17_Chr2g0293271 27.100 369 214 7 15 381 45 360 1.17e-36 143
Msa0360720 MtrunA17_Chr1g0166551 30.488 246 167 4 168 410 100 344 1.15e-29 124
Msa0360720 MtrunA17_Chr6g0462791 36.527 167 104 2 112 278 13 177 4.15e-28 111
Msa0360720 MtrunA17_Chr6g0462631 28.378 296 164 6 112 403 42 293 6.77e-28 114
Msa0360720 MtrunA17_Chr1g0188601 32.642 193 127 2 84 275 1 191 2.05e-27 110
Msa0360720 MtrunA17_Chr5g0394391 26.667 420 279 12 4 404 30 439 3.51e-25 110
Msa0360720 MtrunA17_Chr6g0462751 25.429 350 196 7 68 411 21 311 6.04e-23 100
Msa0360720 MtrunA17_Chr7g0223671 29.570 186 128 2 68 252 10 193 5.27e-22 94.7
Msa0360720 MtrunA17_Chr7g0223861 35.593 118 76 0 70 187 4 121 2.25e-20 87.8
Msa0360720 MtrunA17_Chr4g0046881 34.783 138 82 3 133 268 20 151 2.36e-19 85.5
Msa0360720 MtrunA17_Chr7g0223761 30.539 167 113 2 238 401 7 173 1.08e-17 85.5
Msa0360720 MtrunA17_Chr4g0064621 24.115 452 304 14 4 429 141 579 2.27e-17 86.7
Msa0360720 MtrunA17_Chr7g0223771 29.730 148 103 1 88 235 4 150 2.92e-17 80.1
Msa0360720 MtrunA17_Chr4g0060241 26.471 306 202 8 113 404 125 421 3.80e-16 82.4
Msa0360720 MtrunA17_Chr6g0462701 28.947 152 83 2 112 263 42 168 5.18e-12 65.1
Msa0360720 MtrunA17_Chr6g0481391 25.620 121 87 1 30 150 13 130 1.21e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0360720 AT1G11660.4 59.392 756 292 4 1 755 1 742 0.0 902
Msa0360720 AT1G11660.3 59.392 756 292 4 1 755 1 742 0.0 902
Msa0360720 AT1G11660.1 59.392 756 292 4 1 755 1 742 0.0 902
Msa0360720 AT1G11660.2 57.858 719 288 4 38 755 1 705 0.0 833
Msa0360720 AT1G79930.1 49.811 793 357 6 1 755 1 790 0.0 778
Msa0360720 AT1G79930.2 50.639 782 343 7 1 743 1 778 0.0 775
Msa0360720 AT1G79920.1 52.080 649 275 6 1 617 1 645 0.0 667
Msa0360720 AT1G79920.3 52.080 649 275 6 1 617 1 645 0.0 663
Msa0360720 AT1G79920.2 52.080 649 275 6 1 617 1 645 0.0 663
Msa0360720 AT1G79920.4 52.080 649 275 6 1 617 1 645 0.0 663
Msa0360720 AT4G16660.1 28.993 814 511 24 2 755 25 831 1.18e-88 298
Msa0360720 AT4G16660.2 28.993 814 511 24 2 755 49 855 2.00e-88 298
Msa0360720 AT5G28540.1 28.144 668 408 15 2 662 36 638 1.06e-77 264
Msa0360720 AT5G42020.3 27.844 668 410 15 2 662 41 643 3.33e-77 263
Msa0360720 AT5G42020.1 27.844 668 410 15 2 662 36 638 3.53e-77 263
Msa0360720 AT1G16030.1 27.602 663 416 13 4 662 9 611 6.07e-76 259
Msa0360720 AT5G02500.1 27.970 665 411 14 4 662 10 612 7.18e-76 259
Msa0360720 AT3G12580.1 27.803 669 413 15 4 665 10 615 1.13e-74 255
Msa0360720 AT3G09440.1 28.293 668 405 15 4 662 10 612 2.72e-74 254
Msa0360720 AT3G09440.4 28.293 668 405 15 4 662 10 612 2.72e-74 254
Msa0360720 AT3G09440.2 28.293 668 405 15 4 662 10 612 2.72e-74 254
Msa0360720 AT3G09440.3 28.293 668 405 15 4 662 10 612 2.72e-74 254
Msa0360720 AT1G09080.2 28.700 669 402 14 2 662 41 642 1.09e-73 253
Msa0360720 AT1G09080.1 28.700 669 402 14 2 662 51 652 1.60e-73 253
Msa0360720 AT5G02500.2 34.301 379 247 2 4 381 10 387 6.02e-72 244
Msa0360720 AT5G42020.2 32.574 439 276 7 2 436 36 458 9.04e-72 246
Msa0360720 AT1G56410.1 32.754 403 267 3 4 403 10 411 2.17e-70 243
Msa0360720 AT5G02490.1 28.209 670 403 18 4 662 10 612 8.06e-70 242
Msa0360720 AT5G09590.1 33.498 406 253 6 3 403 59 452 1.95e-66 234
Msa0360720 AT4G37910.1 33.420 383 240 4 3 380 54 426 8.61e-61 218
Msa0360720 AT4G37910.2 33.420 383 240 4 3 380 54 426 8.61e-61 218
Msa0360720 AT5G49910.1 32.266 406 259 6 3 403 80 474 1.20e-51 192
Msa0360720 AT4G24280.1 31.527 406 262 6 3 403 80 474 2.05e-49 186
Msa0360720 AT2G32120.1 24.777 448 278 16 4 425 31 445 2.23e-21 99.4
Msa0360720 AT2G32120.2 24.777 448 278 16 4 425 31 445 2.23e-21 99.4

Find 162 sgRNAs with CRISPR-Local

Find 594 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTATAGGCAGGAGATTTC+TGG 0.177339 3_1:-50321793 Msa0360720:CDS
CCCATCTCGGATTGTGTTAT+TGG 0.218141 3_1:-50321594 Msa0360720:CDS
GAATCTTGCATCTGGATTAT+TGG 0.227874 3_1:-50321088 Msa0360720:CDS
TTGTGGAGAATCACACTTAT+TGG 0.239483 3_1:+50318436 None:intergenic
AAGATTGGGTCGACATTCTT+AGG 0.240585 3_1:+50316334 None:intergenic
TGCATTGCAGCGTTTGAGTT+TGG 0.267137 3_1:-50321375 Msa0360720:CDS
CAAAATTACAAGCAAATTAA+TGG 0.282005 3_1:+50322043 None:intergenic
TCTTTGTCATCTTCGTCTTC+TGG 0.285234 3_1:+50314115 None:intergenic
TTTCATTTGAAATACTTAGA+TGG 0.296582 3_1:-50321699 Msa0360720:CDS
AGCTAGTTGGTTCAGGTTCT+AGG 0.310491 3_1:-50320993 Msa0360720:CDS
CTCTGTCCTGTTGAGCTAAC+TGG 0.311382 3_1:+50317966 None:intergenic
TCGCAAGTGAAGAGATTTAT+AGG 0.314040 3_1:-50321807 Msa0360720:CDS
AGTGATTTGTGGTGAAAATT+AGG 0.317576 3_1:-50322150 Msa0360720:intron
CTATCTGAGGTCTCGGACTT+AGG 0.323825 3_1:+50318494 None:intergenic
AAATCTCTTCACTTGCGATA+TGG 0.325541 3_1:+50321812 None:intergenic
GCATTGCAGCGTTTGAGTTT+GGG 0.325875 3_1:-50321374 Msa0360720:CDS
TCTGTGGAGCTAGTTGGTTC+AGG 0.330516 3_1:-50321000 Msa0360720:CDS
GATTGAAGTCCATATGAAAA+AGG 0.332999 3_1:+50320353 None:intergenic
GCCAACTGATTTGTCCCATT+TGG 0.343188 3_1:-50320243 Msa0360720:CDS
ACTCACTTGCATTCAACTTT+CGG 0.346468 3_1:+50320920 None:intergenic
AAAACTAGAAGATCTGAAAA+AGG 0.347739 3_1:-50316710 Msa0360720:intron
ACCCCTGCTGTCGTCTGCTT+TGG 0.352853 3_1:-50321897 Msa0360720:CDS
CTTGGAATGAGATGGCCTTT+TGG 0.353900 3_1:+50320287 None:intergenic
AATCGTTCGCTTTGATTCAA+TGG 0.375856 3_1:+50322799 None:intergenic
AGCGCCATTGGCAACAGAAT+TGG 0.380177 3_1:+50318469 None:intergenic
ATATGACTTGACCATAAGAT+TGG 0.380654 3_1:+50316319 None:intergenic
GAGATTTCTGGATCCTGATA+TGG 0.383130 3_1:-50321781 Msa0360720:CDS
GTGAAGTAGATTGTGTGAAT+TGG 0.384578 3_1:-50322072 Msa0360720:five_prime_UTR
AGCATAGACATTATTTGAAC+TGG 0.388293 3_1:+50321660 None:intergenic
GCGCAATAGAGGAGCTAAAC+AGG 0.389650 3_1:-50316291 Msa0360720:intron
GATGGATGAGAAAGATGTTA+AGG 0.391889 3_1:-50321136 Msa0360720:CDS
AGAACTCCAGTTAGCTCAAC+AGG 0.394053 3_1:-50317972 Msa0360720:CDS
ACGCAGCCTAATGCAAGCCT+TGG 0.398015 3_1:+50321227 None:intergenic
GAATTTGAGAATCTTGCATC+TGG 0.403441 3_1:-50321096 Msa0360720:CDS
TCGCCAAAGCAGACGACAGC+AGG 0.408209 3_1:+50321894 None:intergenic
AGAATGTCGACCCAATCTTA+TGG 0.412429 3_1:-50316330 Msa0360720:CDS
TCAATAAATGCAACATAACT+TGG 0.417342 3_1:+50321423 None:intergenic
TCGATATTTAGCGGTGCCTC+TGG 0.422641 3_1:+50321165 None:intergenic
TCTTTGTACCGAATCTCAAT+TGG 0.423825 3_1:+50316604 None:intergenic
CTTGCGATATGGTTGACTTT+GGG 0.426132 3_1:+50321823 None:intergenic
GTTGAATGATGAATCGAAAC+GGG 0.426655 3_1:-50321922 Msa0360720:CDS
TTCGTCTTCTGAAGGTGTCC+TGG 0.427253 3_1:+50314153 None:intergenic
GACTGAGGATTGGCTTTATG+AGG 0.428957 3_1:-50316767 Msa0360720:CDS
CTTGACGCGGCAATAATTGC+TGG 0.430407 3_1:-50321531 Msa0360720:CDS
GATAATAATGTACTCACTGC+TGG 0.437528 3_1:+50320967 None:intergenic
TCAATGTATTCACGGATGAT+TGG 0.438435 3_1:+50314078 None:intergenic
AAATTCTCATTCACTGCAAT+AGG 0.439271 3_1:+50318040 None:intergenic
TTCATTTGAAATACTTAGAT+GGG 0.442131 3_1:-50321698 Msa0360720:CDS
TTGCGTAGAAAGCTTCCAAA+TGG 0.446853 3_1:+50320228 None:intergenic
TGCAAGTCGGTGAAGTATGA+TGG 0.449561 3_1:+50321567 None:intergenic
ACTGCAACTGCTCTTAGTTA+TGG 0.451796 3_1:-50321477 Msa0360720:CDS
GCAGTGAATGAGAATTTCTA+TGG 0.456214 3_1:-50318034 Msa0360720:CDS
GATGGGAAGACCACAGTACT+TGG 0.456596 3_1:+50320269 None:intergenic
ATTTCTTCTGTGGAGCTAGT+TGG 0.456860 3_1:-50321006 Msa0360720:CDS
CGTTTGAGTTTGGGCAAATG+AGG 0.457526 3_1:-50321365 Msa0360720:CDS
TCATATTAAGAGCGCAATAG+AGG 0.458464 3_1:-50316302 Msa0360720:CDS
GACAAATCAGTTGGCTTGGA+TGG 0.460531 3_1:+50320251 None:intergenic
ACTTGCGATATGGTTGACTT+TGG 0.461121 3_1:+50321822 None:intergenic
GTATTCTCGCACACGGTATG+TGG 0.463406 3_1:+50320855 None:intergenic
AGCATTAATTGAAGCAGGCT+TGG 0.471739 3_1:-50321040 Msa0360720:CDS
TCAATTAATGCTTCGTTGCA+AGG 0.472169 3_1:+50321051 None:intergenic
AACAGCTCTTCAACACATAT+CGG 0.473623 3_1:-50316840 Msa0360720:intron
TTGTCATCTTCGTCTTCTGA+AGG 0.473797 3_1:+50314145 None:intergenic
AAGAGAGGGATGTCATATCT+AGG 0.475264 3_1:-50316801 Msa0360720:CDS
GCGCCTCATCAATGTATTCA+CGG 0.476825 3_1:+50314070 None:intergenic
TGTGTGGCTTCAGTTGATCA+AGG 0.477113 3_1:-50318564 Msa0360720:intron
AACGAAGCATTAATTGAAGC+AGG 0.477356 3_1:-50321045 Msa0360720:CDS
GGTACTATCTTCAGCGCCAT+TGG 0.480640 3_1:+50318457 None:intergenic
ATGGATGAGAAAGATGTTAA+GGG 0.484542 3_1:-50321135 Msa0360720:CDS
ATGGGACAAATCAGTTGGCT+TGG 0.486215 3_1:+50320247 None:intergenic
TTTGGGAAAAGTACACCATC+TGG 0.486296 3_1:+50320305 None:intergenic
GCATGGATCTCAAGGTAGTA+AGG 0.492874 3_1:-50318728 Msa0360720:CDS
GTAGATTGTGTGAATTGGAT+TGG 0.496511 3_1:-50322067 Msa0360720:five_prime_UTR
GCTAAATATCGAGTGTCTGA+TGG 0.498645 3_1:-50321154 Msa0360720:CDS
TTTCAGATCGGTCCTATGCA+TGG 0.498893 3_1:-50318745 Msa0360720:intron
ATTGGTACTATCTGAGGTCT+CGG 0.498902 3_1:+50318487 None:intergenic
TGAAACAAAACGCCACCATC+CGG 0.499778 3_1:+50321717 None:intergenic
CTATACTTGTCAGAAGGTAT+CGG 0.500444 3_1:+50313880 None:intergenic
TATGTTGCATTTATTGACAT+TGG 0.501872 3_1:-50321417 Msa0360720:CDS
TGTTGAATGATGAATCGAAA+CGG 0.503473 3_1:-50321923 Msa0360720:CDS
CTAATGCCAAGGCTTGCATT+AGG 0.505620 3_1:-50321233 Msa0360720:CDS
TAGATATGACATCCCTCTCT+TGG 0.505654 3_1:+50316803 None:intergenic
CTTGCATTCAACTTTCGGCT+CGG 0.505967 3_1:+50320925 None:intergenic
TCTGGATCCTGATATGGAAA+AGG 0.508996 3_1:-50321775 Msa0360720:CDS
AAGTGAAGAGATTTATAGGC+AGG 0.509278 3_1:-50321803 Msa0360720:CDS
ACAGTACTTACATAACTTTG+TGG 0.511678 3_1:+50318419 None:intergenic
TATGACTTGACCATAAGATT+GGG 0.512744 3_1:+50316320 None:intergenic
AGATTTGGAGGTACCCATCT+CGG 0.515016 3_1:-50321607 Msa0360720:CDS
TCTTGAAACTTCTCAAGGGC+CGG 0.516494 3_1:-50321736 Msa0360720:CDS
TGGTGGATCCAATTGAGATT+CGG 0.522302 3_1:-50316612 Msa0360720:CDS
ACCAATAACACAATCCGAGA+TGG 0.528131 3_1:+50321593 None:intergenic
TGCGTAGAAAGCTTCCAAAT+GGG 0.529319 3_1:+50320229 None:intergenic
CGAAGATGACAAAGACAAGT+TGG 0.531629 3_1:-50314107 Msa0360720:CDS
CTCCCTCTTGAAACTTCTCA+AGG 0.537397 3_1:-50321741 Msa0360720:CDS
TGAGTTGAAATGAGTGTGGT+AGG 0.537638 3_1:-50322008 Msa0360720:exon
TTGCTGTGGCAAAGCATCGC+GGG 0.538277 3_1:-50321956 Msa0360720:CDS
TGTCTATGAGACGAGGAGTA+AGG 0.539018 3_1:-50317900 Msa0360720:intron
TGCACAACATAGTGAAATCC+AGG 0.540959 3_1:-50314171 Msa0360720:CDS
TCCAAATGGGACAAATCAGT+TGG 0.545647 3_1:+50320242 None:intergenic
TTGACGCGGCAATAATTGCT+GGG 0.549851 3_1:-50321530 Msa0360720:CDS
ACAAATCAGTTGGCTTGGAT+GGG 0.550025 3_1:+50320252 None:intergenic
CTTCACCGACTTGCAGAGAC+GGG 0.553538 3_1:-50321559 Msa0360720:CDS
TATTCTCGCACACGGTATGT+GGG 0.555935 3_1:+50320856 None:intergenic
CGAATTTCTGATAGACCAGA+TGG 0.560566 3_1:-50320320 Msa0360720:CDS
GTTTGCAAGAGACTGAGGAT+TGG 0.563246 3_1:-50316777 Msa0360720:CDS
TGCAGAGAAGATTTCTTCTG+TGG 0.563467 3_1:-50321016 Msa0360720:CDS
CAGTCGTGTATCAGTCTCAA+AGG 0.575227 3_1:+50321501 None:intergenic
CCAATAACACAATCCGAGAT+GGG 0.575647 3_1:+50321594 None:intergenic
GCAAGTCGGTGAAGTATGAT+GGG 0.575797 3_1:+50321568 None:intergenic
GAAAAGATAAGGCGAACAGA+AGG 0.576632 3_1:-50318066 Msa0360720:CDS
CGCCAAAGCAGACGACAGCA+GGG 0.576685 3_1:+50321895 None:intergenic
AGATTGTCTAAGAAAAGATA+AGG 0.579423 3_1:-50318077 Msa0360720:CDS
ATGTTAAGGGCTTTATAACA+AGG 0.580637 3_1:-50321122 Msa0360720:CDS
TTAGCAATGAAGCAGAGCAT+TGG 0.581229 3_1:-50316390 Msa0360720:CDS
AGAGCATTGGCTAACAGAGA+AGG 0.581697 3_1:-50316377 Msa0360720:CDS
CGCAATCGTCACCATTCACA+AGG 0.581888 3_1:-50322757 Msa0360720:intron
GGTCCTATGCATGGATCTCA+AGG 0.585543 3_1:-50318736 Msa0360720:CDS
TCTGCTTTGGCGAGAAGCAG+CGG 0.586019 3_1:-50321884 Msa0360720:CDS
ATCAGACACTCGATATTTAG+CGG 0.586237 3_1:+50321156 None:intergenic
ACTTCACCGACTTGCAGAGA+CGG 0.589672 3_1:-50321560 Msa0360720:CDS
TGATGTGTATTCTAATGCCA+AGG 0.591618 3_1:-50321244 Msa0360720:CDS
AACAGAATTGGTACTATCTG+AGG 0.592528 3_1:+50318481 None:intergenic
GAAACTTCTCAAGGGCCGGA+TGG 0.593136 3_1:-50321732 Msa0360720:CDS
ACTTCTCAAGGGCCGGATGG+TGG 0.593340 3_1:-50321729 Msa0360720:CDS
GAGTTGAAATGAGTGTGGTA+GGG 0.594039 3_1:-50322007 Msa0360720:exon
ACTCCTCGTCTCATAGACAT+AGG 0.598057 3_1:+50317904 None:intergenic
AGCTCAACAGGACAGAGCTG+TGG 0.600190 3_1:-50317960 Msa0360720:CDS
CTCATAGACATAGGACTCCA+AGG 0.602157 3_1:+50317913 None:intergenic
GCTTTGCTAGTGACCAAGAG+AGG 0.604732 3_1:-50316816 Msa0360720:CDS
AATGAACATGAACTACCACC+TGG 0.605194 3_1:-50320206 Msa0360720:CDS
CCACAGTACTTGGAATGAGA+TGG 0.606806 3_1:+50320279 None:intergenic
ATACCGTGTGCGAGAATACG+AGG 0.608025 3_1:-50320851 Msa0360720:intron
CAAAGAAAAGAAGAACACCT+TGG 0.609634 3_1:-50317930 Msa0360720:CDS
AGTACCAATTCTGTTGCCAA+TGG 0.610914 3_1:-50318473 Msa0360720:CDS
AATTGAATATACCTTGTGAA+TGG 0.611723 3_1:+50322746 None:intergenic
TTTCTATGGTGGAATGACAA+TGG 0.611799 3_1:-50318020 Msa0360720:CDS
TAGGAGTTTGCAAGAGACTG+AGG 0.618731 3_1:-50316782 Msa0360720:CDS
TCAGTTGATCAAGGATCGCA+CGG 0.618974 3_1:-50318555 Msa0360720:intron
CATTGGTCAATGCGACACTC+AGG 0.620652 3_1:-50321400 Msa0360720:CDS
TGTTAAGGGCTTTATAACAA+GGG 0.620789 3_1:-50321121 Msa0360720:CDS
GAGGATTGGCTTTATGAGGA+CGG 0.621172 3_1:-50316763 Msa0360720:CDS
GGCCCTTGAGAAGTTTCAAG+AGG 0.625597 3_1:+50321738 None:intergenic
TCCCTCTTGAAACTTCTCAA+GGG 0.627702 3_1:-50321740 Msa0360720:CDS
CTACCTTGAGATCCATGCAT+AGG 0.630694 3_1:+50318733 None:intergenic
CTTTGCTAGTGACCAAGAGA+GGG 0.635803 3_1:-50316815 Msa0360720:CDS
GCCCTTGAGAAGTTTCAAGA+GGG 0.636685 3_1:+50321739 None:intergenic
CGAGTTCAACTAAATCTGCA+TGG 0.636814 3_1:-50318691 Msa0360720:CDS
AGTGTGGTAGGGTTTGACAT+TGG 0.639158 3_1:-50321996 Msa0360720:CDS
CTAAACTGAGCATACCGTGA+AGG 0.651343 3_1:+50320163 None:intergenic
CATCCGTGAATACATTGATG+AGG 0.657760 3_1:-50314073 Msa0360720:exon
TGAGAACTGTGTTATTGCTG+TGG 0.670838 3_1:-50321970 Msa0360720:CDS
GTGAATGAGAATTTCTATGG+TGG 0.675812 3_1:-50318031 Msa0360720:CDS
ATATGCCCGTCTCTGCAAGT+CGG 0.684436 3_1:+50321554 None:intergenic
GCCAAAGCAGACGACAGCAG+GGG 0.693366 3_1:+50321896 None:intergenic
AAAGTGAGTTGAAATGAGTG+TGG 0.694552 3_1:-50322012 Msa0360720:exon
CCATCTCATTCCAAGTACTG+TGG 0.696543 3_1:-50320279 Msa0360720:CDS
ATTGCTGTGGCAAAGCATCG+CGG 0.704864 3_1:-50321957 Msa0360720:CDS
AAACCTCGTATTCTCGCACA+CGG 0.711002 3_1:+50320848 None:intergenic
GCAAGTGAGTGTGTAGCTCG+TGG 0.714591 3_1:-50320907 Msa0360720:CDS
CTTGTGAATGGTGACGATTG+CGG 0.715321 3_1:+50322758 None:intergenic
AGTCCTATGTCTATGAGACG+AGG 0.719415 3_1:-50317907 Msa0360720:CDS
GAGACGGGCATATCTTGACG+CGG 0.727755 3_1:-50321544 Msa0360720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTATTTTTTTGAATTTC+AGG - chr3_1:50316893-50316912 Msa0360720:intron 10.0%
!!! TTTCTAAGAAATATTAAAAA+CGG - chr3_1:50317384-50317403 Msa0360720:intron 10.0%
!! CACAAAAAAAAAAAAAAAAA+AGG + chr3_1:50317486-50317505 None:intergenic 10.0%
!!! GATTATCTTATATTTTTTAT+TGG - chr3_1:50319216-50319235 Msa0360720:intron 10.0%
!!! AAAAATTGAATTTTTCGAAA+TGG - chr3_1:50314063-50314082 Msa0360720:three_prime_UTR 15.0%
!!! AAAATTGAATTTTTCGAAAT+GGG - chr3_1:50314064-50314083 Msa0360720:three_prime_UTR 15.0%
!! TTTAAAAAGCTTATGAAAAT+TGG - chr3_1:50314274-50314293 Msa0360720:intron 15.0%
!! ACACTAATATAAGAAAATAA+AGG + chr3_1:50316705-50316724 None:intergenic 15.0%
!! AAAACTTATATAGATATAGA+CGG - chr3_1:50316958-50316977 Msa0360720:intron 15.0%
!!! TTCTAAGAAATATTAAAAAC+GGG - chr3_1:50317385-50317404 Msa0360720:intron 15.0%
!!! AAAAAAAAAAGGAAAAGTAT+TGG + chr3_1:50317475-50317494 None:intergenic 15.0%
!! TCATAATTTATACCAAAAAA+TGG + chr3_1:50318030-50318049 None:intergenic 15.0%
!! TAAAAAGTAAAATAGTTGTT+TGG + chr3_1:50319032-50319051 None:intergenic 15.0%
!! ACAAATATAAACTAATCTTA+AGG + chr3_1:50320407-50320426 None:intergenic 15.0%
!! TCTAATTTATTATATCATCA+TGG + chr3_1:50320919-50320938 None:intergenic 15.0%
!! TATCATGTAATTTCTTAAAA+TGG - chr3_1:50321610-50321629 Msa0360720:CDS 15.0%
!! ATCATGTAATTTCTTAAAAT+GGG - chr3_1:50321611-50321630 Msa0360720:CDS 15.0%
!!! TAATTTTGATATAAAAGCAA+GGG + chr3_1:50322426-50322445 None:intergenic 15.0%
!!! TTAATTTTGATATAAAAGCA+AGG + chr3_1:50322427-50322446 None:intergenic 15.0%
!!! ATTTTGAGGAAAAATTAAGT+GGG + chr3_1:50314015-50314034 None:intergenic 20.0%
!!! AATTTTGAGGAAAAATTAAG+TGG + chr3_1:50314016-50314035 None:intergenic 20.0%
!!! CTTGTTTTATTTACAGTTTA+AGG - chr3_1:50314143-50314162 Msa0360720:CDS 20.0%
!! TATTTACAGTTTAAGGATTT+AGG - chr3_1:50314150-50314169 Msa0360720:CDS 20.0%
!! ATTTACAGTTTAAGGATTTA+GGG - chr3_1:50314151-50314170 Msa0360720:CDS 20.0%
!! CAAAATTACAAGCAAATTAA+TGG + chr3_1:50314608-50314627 None:intergenic 20.0%
!!! TTTCATTTGAAATACTTAGA+TGG - chr3_1:50314949-50314968 Msa0360720:intron 20.0%
!!! TTCATTTGAAATACTTAGAT+GGG - chr3_1:50314950-50314969 Msa0360720:intron 20.0%
!! ATACTGAAAATAAACCTTTA+AGG + chr3_1:50316124-50316143 None:intergenic 20.0%
!!! AGAAATTGCATTGATTTAAA+CGG + chr3_1:50316247-50316266 None:intergenic 20.0%
!! TTATAAATAACAGCTCAAAA+GGG + chr3_1:50316789-50316808 None:intergenic 20.0%
!! ATTATAAATAACAGCTCAAA+AGG + chr3_1:50316790-50316809 None:intergenic 20.0%
!!! TGTTTTATGAATTGTTGTTA+AGG + chr3_1:50316938-50316957 None:intergenic 20.0%
!! CATCACAGTTATATATTATA+AGG + chr3_1:50317236-50317255 None:intergenic 20.0%
!! AGAATATATTATGACATAAG+TGG + chr3_1:50317308-50317327 None:intergenic 20.0%
!!! TTTCTTAGAAACTTTGTTTT+AGG + chr3_1:50317375-50317394 None:intergenic 20.0%
!!! TTTTTTTTTTTTGTGTATCC+AGG - chr3_1:50317491-50317510 Msa0360720:intron 20.0%
!! ATGCTTACAAATATAATGTA+TGG + chr3_1:50317536-50317555 None:intergenic 20.0%
!! AACATAAATCAGACAATATT+TGG + chr3_1:50317561-50317580 None:intergenic 20.0%
!!! TTGTCTGATTTATGTTTTAT+TGG - chr3_1:50317565-50317584 Msa0360720:intron 20.0%
!!! AGTTAGAAATTTAACTTGAA+TGG - chr3_1:50317593-50317612 Msa0360720:intron 20.0%
!!! GGTTTTATTTTTCCATTTTT+TGG - chr3_1:50318015-50318034 Msa0360720:CDS 20.0%
!!! CTTTCTTTTTCTTTTTCTTT+TGG - chr3_1:50318287-50318306 Msa0360720:intron 20.0%
!! TATTGCCATATTACATTTAT+GGG + chr3_1:50318389-50318408 None:intergenic 20.0%
!!! CTTTTAATATGAGAATCTAA+AGG + chr3_1:50319479-50319498 None:intergenic 20.0%
!! TTGATAAAGTTATAGCATAT+GGG + chr3_1:50319531-50319550 None:intergenic 20.0%
!! TATAACTTTATCAAGTAAAG+TGG - chr3_1:50319537-50319556 Msa0360720:intron 20.0%
!! GGATTAAAATAAAAACTTCA+TGG - chr3_1:50319571-50319590 Msa0360720:intron 20.0%
!! CATGAAATAAGATAAAAGTT+TGG + chr3_1:50319730-50319749 None:intergenic 20.0%
!!! TCTTAAGATAAGCTTTTAAT+TGG - chr3_1:50320206-50320225 Msa0360720:CDS 20.0%
!!! CTTAAGATAAGCTTTTAATT+GGG - chr3_1:50320207-50320226 Msa0360720:CDS 20.0%
!!! AGTTTATATTTGTCATTTTC+TGG - chr3_1:50320414-50320433 Msa0360720:intron 20.0%
!! ATATATTCTATCATTAGAAC+AGG - chr3_1:50320459-50320478 Msa0360720:intron 20.0%
!! TTCATATTAAAGGAAATTGA+AGG + chr3_1:50320826-50320845 None:intergenic 20.0%
!! TCATGTAATTTCTTAAAATG+GGG - chr3_1:50321612-50321631 Msa0360720:CDS 20.0%
!! ATCAATCTAATTAACAAATG+TGG + chr3_1:50321918-50321937 None:intergenic 20.0%
!! ATATAAATCCCTAAAATTTG+AGG - chr3_1:50322108-50322127 Msa0360720:intron 20.0%
!!! TTCTAAATCCTCAAATTTTA+GGG + chr3_1:50322119-50322138 None:intergenic 20.0%
!!! ATTCTAAATCCTCAAATTTT+AGG + chr3_1:50322120-50322139 None:intergenic 20.0%
!! AATTAATTTATGTCTGTTGA+CGG - chr3_1:50322441-50322460 Msa0360720:intron 20.0%
! AATTGAATATACCTTGTGAA+TGG + chr3_1:50313905-50313924 None:intergenic 25.0%
!! CGAAAAATTCAATTTTTCCT+TGG + chr3_1:50314060-50314079 None:intergenic 25.0%
!!! GTTGTTTTTAGAAGCTATAT+TGG - chr3_1:50314231-50314250 Msa0360720:intron 25.0%
! CATCCATTCTTACTAATTAA+GGG + chr3_1:50314385-50314404 None:intergenic 25.0%
!! TTTTCTTTTGTAGTGATTTG+TGG - chr3_1:50314487-50314506 Msa0360720:intron 25.0%
!! AAAACAAATTTTCAGAGTGA+TGG - chr3_1:50315201-50315220 Msa0360720:intron 25.0%
! TCAATAAATGCAACATAACT+TGG + chr3_1:50315228-50315247 None:intergenic 25.0%
! TATGTTGCATTTATTGACAT+TGG - chr3_1:50315231-50315250 Msa0360720:intron 25.0%
!! TCATTTTGCTGAAAAATTCA+AGG - chr3_1:50315368-50315387 Msa0360720:intron 25.0%
!!! ACTTTTTTGCTGATGTAAAA+TGG - chr3_1:50316167-50316186 Msa0360720:intron 25.0%
! GGGTACAATATTACAAATAA+AGG + chr3_1:50316226-50316245 None:intergenic 25.0%
!!! GAAATTGCATTGATTTAAAC+GGG + chr3_1:50316246-50316265 None:intergenic 25.0%
!!! GATATTAGTCCTTTTTCATA+TGG - chr3_1:50316286-50316305 Msa0360720:intron 25.0%
!! TATGCTCAGTTTAGAATATT+TGG - chr3_1:50316494-50316513 Msa0360720:intron 25.0%
!!! GTGTTTTTGTTTTTAGTACT+AGG - chr3_1:50316622-50316641 Msa0360720:intron 25.0%
!!! AAATTTAACTTGAATGGATC+TGG - chr3_1:50317599-50317618 Msa0360720:intron 25.0%
!!! AATTTAACTTGAATGGATCT+GGG - chr3_1:50317600-50317619 Msa0360720:intron 25.0%
! CTATACCTAATTCAGAAATA+GGG + chr3_1:50317645-50317664 None:intergenic 25.0%
! TCTATACCTAATTCAGAAAT+AGG + chr3_1:50317646-50317665 None:intergenic 25.0%
!! TTGCTAAAAGGAAGTATATA+TGG - chr3_1:50317787-50317806 Msa0360720:intron 25.0%
!!! TCATTCAAATTTTGATGCAA+TGG - chr3_1:50318123-50318142 Msa0360720:intron 25.0%
! TCTTATCCTATATATTGCAT+AGG - chr3_1:50318354-50318373 Msa0360720:intron 25.0%
! ACAAACCCATAAATGTAATA+TGG - chr3_1:50318381-50318400 Msa0360720:intron 25.0%
! GTATTGCCATATTACATTTA+TGG + chr3_1:50318390-50318409 None:intergenic 25.0%
! AGATTGTCTAAGAAAAGATA+AGG - chr3_1:50318571-50318590 Msa0360720:intron 25.0%
! AAGTAAAATAGTTGTTTGGT+TGG + chr3_1:50319028-50319047 None:intergenic 25.0%
! AATCTAAAGGATATCATTAG+GGG + chr3_1:50319466-50319485 None:intergenic 25.0%
! GAATCTAAAGGATATCATTA+GGG + chr3_1:50319467-50319486 None:intergenic 25.0%
! AGAATCTAAAGGATATCATT+AGG + chr3_1:50319468-50319487 None:intergenic 25.0%
! CTTGATAAAGTTATAGCATA+TGG + chr3_1:50319532-50319551 None:intergenic 25.0%
! TATGAAATATTATCTGCACA+GGG - chr3_1:50319687-50319706 Msa0360720:intron 25.0%
! AAAACTAGAAGATCTGAAAA+AGG - chr3_1:50319938-50319957 Msa0360720:intron 25.0%
! AGCATCACAATAATATATAG+TGG + chr3_1:50320184-50320203 None:intergenic 25.0%
! AATCTTAAGGAAAACAGAAA+GGG + chr3_1:50320394-50320413 None:intergenic 25.0%
! TAATCTTAAGGAAAACAGAA+AGG + chr3_1:50320395-50320414 None:intergenic 25.0%
!!! TTTGTCATTTTCTGGTTATA+TGG - chr3_1:50320422-50320441 Msa0360720:intron 25.0%
! TGATATGATAATTCGTGTAA+TGG + chr3_1:50320687-50320706 None:intergenic 25.0%
! AATCTTATGCACCAAAAAAA+GGG + chr3_1:50320790-50320809 None:intergenic 25.0%
!! TATTGGTTGGTTCATATTAA+AGG + chr3_1:50320836-50320855 None:intergenic 25.0%
! GAATGAATAAGGTTAACATT+AGG + chr3_1:50320870-50320889 None:intergenic 25.0%
! ACCTTATTCATTCTACATAA+AGG - chr3_1:50320877-50320896 Msa0360720:CDS 25.0%
! CCTTATTCATTCTACATAAA+GGG - chr3_1:50320878-50320897 Msa0360720:CDS 25.0%
! TGTTATTATTGAACCAAACT+AGG - chr3_1:50321002-50321021 Msa0360720:CDS 25.0%
! TACTCATCTCTTAATTTAGA+AGG - chr3_1:50321062-50321081 Msa0360720:CDS 25.0%
!! TCTCTTAATTTAGAAGGTAT+AGG - chr3_1:50321068-50321087 Msa0360720:CDS 25.0%
!! CTCTTAATTTAGAAGGTATA+GGG - chr3_1:50321069-50321088 Msa0360720:CDS 25.0%
!! TCTTAATTTAGAAGGTATAG+GGG - chr3_1:50321070-50321089 Msa0360720:CDS 25.0%
!! TGTCCATAAAATGCTTTAAA+AGG - chr3_1:50321119-50321138 Msa0360720:CDS 25.0%
!!! TCTCCTTTTAAAGCATTTTA+TGG + chr3_1:50321125-50321144 None:intergenic 25.0%
! AAGATATATTAGATGTGGTT+GGG + chr3_1:50321267-50321286 None:intergenic 25.0%
! TAAGATATATTAGATGTGGT+TGG + chr3_1:50321268-50321287 None:intergenic 25.0%
!! AGTCTAAGATATATTAGATG+TGG + chr3_1:50321272-50321291 None:intergenic 25.0%
! CTATGTTATTATTGAATGTG+AGG + chr3_1:50321499-50321518 None:intergenic 25.0%
! CATGTAATTTCTTAAAATGG+GGG - chr3_1:50321613-50321632 Msa0360720:CDS 25.0%
!!! TTTATTTTGTATCTTGAACC+AGG + chr3_1:50321774-50321793 None:intergenic 25.0%
!! ATCCAAATAATCAGGTTTTT+CGG - chr3_1:50322195-50322214 Msa0360720:intron 25.0%
! ATGATATGAATAGATCTGAT+AGG - chr3_1:50322310-50322329 Msa0360720:intron 25.0%
! TGATATGAATAGATCTGATA+GGG - chr3_1:50322311-50322330 Msa0360720:intron 25.0%
!!! TTTTTTCTATACTTGTCAGA+AGG + chr3_1:50322777-50322796 None:intergenic 25.0%
TCCTCAAAATTTCCAACAAT+TGG - chr3_1:50314025-50314044 Msa0360720:intron 30.0%
! TCCAATTGTTGGAAATTTTG+AGG + chr3_1:50314029-50314048 None:intergenic 30.0%
!! TGGAATTTTGATCCAATTGT+TGG + chr3_1:50314040-50314059 None:intergenic 30.0%
ACAATTGGATCAAAATTCCA+AGG - chr3_1:50314040-50314059 Msa0360720:three_prime_UTR 30.0%
!!! TAAGTTTTGTGAGAGTGTTT+GGG + chr3_1:50314323-50314342 None:intergenic 30.0%
!!! ATAAGTTTTGTGAGAGTGTT+TGG + chr3_1:50314324-50314343 None:intergenic 30.0%
CCATCCATTCTTACTAATTA+AGG + chr3_1:50314386-50314405 None:intergenic 30.0%
CCTTAATTAGTAAGAATGGA+TGG - chr3_1:50314383-50314402 Msa0360720:intron 30.0%
! AGTGATTTGTGGTGAAAATT+AGG - chr3_1:50314498-50314517 Msa0360720:intron 30.0%
!!! AGGTGAAGTTTTTGAGTTTT+TGG - chr3_1:50314545-50314564 Msa0360720:intron 30.0%
!!! GGTGAAGTTTTTGAGTTTTT+GGG - chr3_1:50314546-50314565 Msa0360720:intron 30.0%
!!! GTGAAGTTTTTGAGTTTTTG+GGG - chr3_1:50314547-50314566 Msa0360720:intron 30.0%
!!! TGAAGTTTTTGAGTTTTTGG+GGG - chr3_1:50314548-50314567 Msa0360720:intron 30.0%
TGTTGAATGATGAATCGAAA+CGG - chr3_1:50314725-50314744 Msa0360720:intron 30.0%
AGCATAGACATTATTTGAAC+TGG + chr3_1:50314991-50315010 None:intergenic 30.0%
GACTATGACAGAAAAAGATT+TGG - chr3_1:50315026-50315045 Msa0360720:intron 30.0%
TATGACAGAAAAAGATTTGG+AGG - chr3_1:50315029-50315048 Msa0360720:intron 30.0%
ATGGATGAGAAAGATGTTAA+GGG - chr3_1:50315513-50315532 Msa0360720:intron 30.0%
! ATGTTAAGGGCTTTATAACA+AGG - chr3_1:50315526-50315545 Msa0360720:intron 30.0%
! TGTTAAGGGCTTTATAACAA+GGG - chr3_1:50315527-50315546 Msa0360720:intron 30.0%
! AAACCTTTAAGGATAAACCT+AGG + chr3_1:50316113-50316132 None:intergenic 30.0%
ATGAAAAAGGACTAATATCC+TGG + chr3_1:50316285-50316304 None:intergenic 30.0%
GATTGAAGTCCATATGAAAA+AGG + chr3_1:50316298-50316317 None:intergenic 30.0%
TCCAAAAATTAGTTCCTTCA+CGG - chr3_1:50316471-50316490 Msa0360720:intron 30.0%
TTACTACATATCCACTATCT+AGG + chr3_1:50316837-50316856 None:intergenic 30.0%
! GAATTGTTGTTAAGGTATCT+AGG + chr3_1:50316930-50316949 None:intergenic 30.0%
CTAAAAAGATAAGTTCTGCT+AGG - chr3_1:50317036-50317055 Msa0360720:intron 30.0%
AGTATCCTTAAACAAAGACT+TGG - chr3_1:50317119-50317138 Msa0360720:intron 30.0%
GAAACATGTTGAGTTACATA+GGG + chr3_1:50317332-50317351 None:intergenic 30.0%
TGAAACATGTTGAGTTACAT+AGG + chr3_1:50317333-50317352 None:intergenic 30.0%
AACATGTTTCAAGAAGTTCT+CGG - chr3_1:50317342-50317361 Msa0360720:intron 30.0%
!!! TTAAAAACGGGTTACTCTTT+TGG - chr3_1:50317397-50317416 Msa0360720:intron 30.0%
!!! TAAAAACGGGTTACTCTTTT+GGG - chr3_1:50317398-50317417 Msa0360720:intron 30.0%
CATGAAATAACCTATGAGTA+TGG - chr3_1:50317429-50317448 Msa0360720:intron 30.0%
!! ATTTAACTTGAATGGATCTG+GGG - chr3_1:50317601-50317620 Msa0360720:intron 30.0%
ACAGTACTTACATAACTTTG+TGG + chr3_1:50318232-50318251 None:intergenic 30.0%
GTCTATCCTATGCAATATAT+AGG + chr3_1:50318363-50318382 None:intergenic 30.0%
! TTTCTGTCATACCATTTTAC+AGG - chr3_1:50318547-50318566 Msa0360720:CDS 30.0%
AAATTCTCATTCACTGCAAT+AGG + chr3_1:50318611-50318630 None:intergenic 30.0%
!! TAACTGGAGTTCTTTTTCAT+GGG + chr3_1:50318669-50318688 None:intergenic 30.0%
! TACTACACTGTTTTATCCTT+TGG - chr3_1:50319100-50319119 Msa0360720:intron 30.0%
TGGTATATGCTAGAACATTA+TGG + chr3_1:50319155-50319174 None:intergenic 30.0%
! AGCATATGGGTTCTTTAAAA+AGG + chr3_1:50319518-50319537 None:intergenic 30.0%
AAGGCATGAAAACAATTCTT+CGG + chr3_1:50319605-50319624 None:intergenic 30.0%
! CGAGTTTTGCATTTACTAAA+GGG + chr3_1:50319645-50319664 None:intergenic 30.0%
! TCGAGTTTTGCATTTACTAA+AGG + chr3_1:50319646-50319665 None:intergenic 30.0%
CTATGAAATATTATCTGCAC+AGG - chr3_1:50319686-50319705 Msa0360720:intron 30.0%
!!! TTTCAGATCTTCTAGTTTTG+AGG + chr3_1:50319937-50319956 None:intergenic 30.0%
!!! TCTTACCTGTTCTTTTTTCT+GGG + chr3_1:50320150-50320169 None:intergenic 30.0%
!!! ATCTTACCTGTTCTTTTTTC+TGG + chr3_1:50320151-50320170 None:intergenic 30.0%
TATGACTTGACCATAAGATT+GGG + chr3_1:50320331-50320350 None:intergenic 30.0%
ATATGACTTGACCATAAGAT+TGG + chr3_1:50320332-50320351 None:intergenic 30.0%
TCTGGTTATATGGTTTGATT+TGG - chr3_1:50320432-50320451 Msa0360720:intron 30.0%
! GAAGTGTTTGTAAATCACTA+TGG - chr3_1:50320540-50320559 Msa0360720:intron 30.0%
ACGAATTATCATATCACCAT+GGG - chr3_1:50320691-50320710 Msa0360720:intron 30.0%
GAATCTTATGCACCAAAAAA+AGG + chr3_1:50320791-50320810 None:intergenic 30.0%
ATTAGGATTCACAAGACTAT+TGG + chr3_1:50320853-50320872 None:intergenic 30.0%
CCCTTTATGTAGAATGAATA+AGG + chr3_1:50320881-50320900 None:intergenic 30.0%
CATAAATGAGGCTAACATTA+GGG + chr3_1:50320967-50320986 None:intergenic 30.0%
CTGAACATGTGTTTAAAAGT+GGG - chr3_1:50321209-50321228 Msa0360720:CDS 30.0%
TGAACATGTGTTTAAAAGTG+GGG - chr3_1:50321210-50321229 Msa0360720:CDS 30.0%
! CAAAATTGACTCATGAATAG+TGG + chr3_1:50321300-50321319 None:intergenic 30.0%
! CACTATTCATGAGTCAATTT+TGG - chr3_1:50321298-50321317 Msa0360720:CDS 30.0%
! ATTCATGAGTCAATTTTGGA+AGG - chr3_1:50321302-50321321 Msa0360720:CDS 30.0%
GAATAGCTGATGTAGTATAT+TGG + chr3_1:50321548-50321567 None:intergenic 30.0%
GATTCTATTGAACTTATGAG+AGG - chr3_1:50321635-50321654 Msa0360720:CDS 30.0%
! ATTATACTTCAAGAGTTGGT+AGG + chr3_1:50321662-50321681 None:intergenic 30.0%
GAAGATTATACTTCAAGAGT+TGG + chr3_1:50321666-50321685 None:intergenic 30.0%
AAAGAATTGTGAAGATCTAC+TGG + chr3_1:50321944-50321963 None:intergenic 30.0%
TATAAATTGATGAGTCTGAG+AGG - chr3_1:50322168-50322187 Msa0360720:intron 30.0%
GGTATACAAACAAAATCGAA+AGG - chr3_1:50322225-50322244 Msa0360720:intron 30.0%
TCAGATCTATTCATATCATG+TGG + chr3_1:50322309-50322328 None:intergenic 30.0%
TTTGATATAAAAGCAAGGGA+TGG + chr3_1:50322422-50322441 None:intergenic 30.0%
AATCGTTCGCTTTGATTCAA+TGG + chr3_1:50313852-50313871 None:intergenic 35.0%
TGAGGAAAAATTAAGTGGGT+GGG + chr3_1:50314011-50314030 None:intergenic 35.0%
TTGAGGAAAAATTAAGTGGG+TGG + chr3_1:50314012-50314031 None:intergenic 35.0%
TCAAATAAGCCAATCCAAAC+AGG - chr3_1:50314359-50314378 Msa0360720:intron 35.0%
TTACTAATTAAGGGCCTGTT+TGG + chr3_1:50314376-50314395 None:intergenic 35.0%
AGGCCCTTAATTAGTAAGAA+TGG - chr3_1:50314379-50314398 Msa0360720:intron 35.0%
TAGTAAGAATGGATGGAGTT+TGG - chr3_1:50314390-50314409 Msa0360720:intron 35.0%
TGTGGTGAAAATTAGGTTTC+TGG - chr3_1:50314505-50314524 Msa0360720:intron 35.0%
GTGGTGAAAATTAGGTTTCT+GGG - chr3_1:50314506-50314525 Msa0360720:intron 35.0%
!! TGGGCTGATTTTGAGTAATT+AGG - chr3_1:50314525-50314544 Msa0360720:intron 35.0%
GTGAAGTAGATTGTGTGAAT+TGG - chr3_1:50314576-50314595 Msa0360720:intron 35.0%
GTAGATTGTGTGAATTGGAT+TGG - chr3_1:50314581-50314600 Msa0360720:intron 35.0%
! AAAGTGAGTTGAAATGAGTG+TGG - chr3_1:50314636-50314655 Msa0360720:intron 35.0%
GTTGAATGATGAATCGAAAC+GGG - chr3_1:50314726-50314745 Msa0360720:intron 35.0%
AAATCTCTTCACTTGCGATA+TGG + chr3_1:50314839-50314858 None:intergenic 35.0%
TCGCAAGTGAAGAGATTTAT+AGG - chr3_1:50314841-50314860 Msa0360720:intron 35.0%
AAGTGAAGAGATTTATAGGC+AGG - chr3_1:50314845-50314864 Msa0360720:intron 35.0%
ATTTATAGGCAGGAGATTTC+TGG - chr3_1:50314855-50314874 Msa0360720:intron 35.0%
! TTCAGATCCTTTTCCATATC+AGG + chr3_1:50314883-50314902 None:intergenic 35.0%
! TACTTTCACATGCTTTTGAC+AGG - chr3_1:50315307-50315326 Msa0360720:intron 35.0%
TGATGTGTATTCTAATGCCA+AGG - chr3_1:50315404-50315423 Msa0360720:intron 35.0%
ATCAGACACTCGATATTTAG+CGG + chr3_1:50315495-50315514 None:intergenic 35.0%
GATGGATGAGAAAGATGTTA+AGG - chr3_1:50315512-50315531 Msa0360720:intron 35.0%
GAATTTGAGAATCTTGCATC+TGG - chr3_1:50315552-50315571 Msa0360720:intron 35.0%
GAATCTTGCATCTGGATTAT+TGG - chr3_1:50315560-50315579 Msa0360720:intron 35.0%
TCAATTAATGCTTCGTTGCA+AGG + chr3_1:50315600-50315619 None:intergenic 35.0%
! AACGAAGCATTAATTGAAGC+AGG - chr3_1:50315603-50315622 Msa0360720:intron 35.0%
GATAATAATGTACTCACTGC+TGG + chr3_1:50315684-50315703 None:intergenic 35.0%
ACTCACTTGCATTCAACTTT+CGG + chr3_1:50315731-50315750 None:intergenic 35.0%
TTAGAGCCCATGTTGTTAAA+TGG - chr3_1:50315873-50315892 Msa0360720:intron 35.0%
TCGCTTCCATTTAACAACAT+GGG + chr3_1:50315882-50315901 None:intergenic 35.0%
ATCGCTTCCATTTAACAACA+TGG + chr3_1:50315883-50315902 None:intergenic 35.0%
ATGTTGTTAAATGGAAGCGA+TGG - chr3_1:50315882-50315901 Msa0360720:intron 35.0%
TGTTGTTAAATGGAAGCGAT+GGG - chr3_1:50315883-50315902 Msa0360720:intron 35.0%
TGCCATATGCAATTTGTGAA+GGG - chr3_1:50315946-50315965 Msa0360720:intron 35.0%
ATCCCTTCACAAATTGCATA+TGG + chr3_1:50315951-50315970 None:intergenic 35.0%
CAGCAAAAAAGTAATAGCAG+TGG + chr3_1:50316159-50316178 None:intergenic 35.0%
GCAATTTCTCATGTTTGTTC+AGG - chr3_1:50316258-50316277 Msa0360720:intron 35.0%
!! CTAATTTTTGGAAACGTTCC+AGG + chr3_1:50316463-50316482 None:intergenic 35.0%
! ACCGTGAAGGAACTAATTTT+TGG + chr3_1:50316475-50316494 None:intergenic 35.0%
AGTGGATATGTAGTAAGACA+TGG - chr3_1:50316841-50316860 Msa0360720:intron 35.0%
GTGGATATGTAGTAAGACAT+GGG - chr3_1:50316842-50316861 Msa0360720:intron 35.0%
TATGTAGTAAGACATGGGTA+TGG - chr3_1:50316847-50316866 Msa0360720:intron 35.0%
TAGAAGAACTGAGATGTTTC+AGG - chr3_1:50317084-50317103 Msa0360720:intron 35.0%
TTTGTTTAAGGATACTCCTC+GGG + chr3_1:50317115-50317134 None:intergenic 35.0%
! CTTTGTTTAAGGATACTCCT+CGG + chr3_1:50317116-50317135 None:intergenic 35.0%
! TCAGACCAAGTCTTTGTTTA+AGG + chr3_1:50317127-50317146 None:intergenic 35.0%
ACATGTTTCAAGAAGTTCTC+GGG - chr3_1:50317343-50317362 Msa0360720:intron 35.0%
ATAACCTATGAGTATGGTGT+CGG - chr3_1:50317435-50317454 Msa0360720:intron 35.0%
GTATAGACTTCATTGCTATG+AGG - chr3_1:50317659-50317678 Msa0360720:intron 35.0%
! CATCTATAGAAAGCTGATTC+TGG + chr3_1:50317757-50317776 None:intergenic 35.0%
TGTGCACTTTCTTTGCTAAA+AGG - chr3_1:50317775-50317794 Msa0360720:intron 35.0%
GAATCAATAGCACAAGAATG+TGG + chr3_1:50317822-50317841 None:intergenic 35.0%
! TTGACCACTTCTTTTCAGAT+CGG - chr3_1:50317891-50317910 Msa0360720:intron 35.0%
TTGATTCAGCTACAGTAAGT+AGG - chr3_1:50317991-50318010 Msa0360720:CDS 35.0%
AACAGAATTGGTACTATCTG+AGG + chr3_1:50318170-50318189 None:intergenic 35.0%
TTGTGGAGAATCACACTTAT+TGG + chr3_1:50318215-50318234 None:intergenic 35.0%
AGAGTTAAGTCACTTAAGCA+GGG + chr3_1:50318264-50318283 None:intergenic 35.0%
AAGAGTTAAGTCACTTAAGC+AGG + chr3_1:50318265-50318284 None:intergenic 35.0%
TAGACAATCTGCCTGTAAAA+TGG + chr3_1:50318561-50318580 None:intergenic 35.0%
GCAGTGAATGAGAATTTCTA+TGG - chr3_1:50318614-50318633 Msa0360720:intron 35.0%
GTGAATGAGAATTTCTATGG+TGG - chr3_1:50318617-50318636 Msa0360720:intron 35.0%
! TTTCTATGGTGGAATGACAA+TGG - chr3_1:50318628-50318647 Msa0360720:intron 35.0%
!! CTAACTGGAGTTCTTTTTCA+TGG + chr3_1:50318670-50318689 None:intergenic 35.0%
!! CAAGGTGTTCTTCTTTTCTT+TGG + chr3_1:50318720-50318739 None:intergenic 35.0%
CAAAGAAAAGAAGAACACCT+TGG - chr3_1:50318718-50318737 Msa0360720:CDS 35.0%
! TGTTTCAGATCAAGTGTTGT+CGG - chr3_1:50318935-50318954 Msa0360720:intron 35.0%
ATGTTGTTGTGTGAATCCAA+AGG + chr3_1:50319119-50319138 None:intergenic 35.0%
AGATCTAGAGATCAATGAGT+TGG + chr3_1:50319187-50319206 None:intergenic 35.0%
AAATGTTATGTGGGGTAAGA+TGG + chr3_1:50319310-50319329 None:intergenic 35.0%
! AGGAAGTGCAAATGTTATGT+GGG + chr3_1:50319319-50319338 None:intergenic 35.0%
! AAGGAAGTGCAAATGTTATG+TGG + chr3_1:50319320-50319339 None:intergenic 35.0%
ATAACATTTGCACTTCCTTG+TGG - chr3_1:50319321-50319340 Msa0360720:intron 35.0%
!!! TTCCAACACAAGGTTTTAGA+GGG + chr3_1:50319360-50319379 None:intergenic 35.0%
ACTTGAAGGGTGAAAAACAA+CGG + chr3_1:50319386-50319405 None:intergenic 35.0%
AAAGGATATCATTAGGGGTT+AGG + chr3_1:50319461-50319480 None:intergenic 35.0%
!!! AGTAAAGTGGAAGTTTTGAG+TGG - chr3_1:50319550-50319569 Msa0360720:intron 35.0%
AACAGCTCTTCAACACATAT+CGG - chr3_1:50319808-50319827 Msa0360720:intron 35.0%
CAGCTACAGAAATAGTAGAT+TGG + chr3_1:50320018-50320037 None:intergenic 35.0%
!! CAATCTACTATTTCTGTAGC+TGG - chr3_1:50320016-50320035 Msa0360720:intron 35.0%
TCTTTGTACCGAATCTCAAT+TGG + chr3_1:50320047-50320066 None:intergenic 35.0%
!!! CTTACCTGTTCTTTTTTCTG+GGG + chr3_1:50320149-50320168 None:intergenic 35.0%
GAACAGGTAAGATAAATAGC+AGG - chr3_1:50320158-50320177 Msa0360720:intron 35.0%
! TCATATTAAGAGCGCAATAG+AGG - chr3_1:50320346-50320365 Msa0360720:CDS 35.0%
!! ACATCTAGCATTTTGACAGT+AGG + chr3_1:50320653-50320672 None:intergenic 35.0%
CACGAATTATCATATCACCA+TGG - chr3_1:50320690-50320709 Msa0360720:intron 35.0%
AGGAAATTGAAGGAGATGAT+AGG + chr3_1:50320816-50320835 None:intergenic 35.0%
ATTAGGGTTCACAATGCTAA+TGG + chr3_1:50320951-50320970 None:intergenic 35.0%
GCATAAATGAGGCTAACATT+AGG + chr3_1:50320968-50320987 None:intergenic 35.0%
CTCTTGATGTAGCATAAATG+AGG + chr3_1:50320979-50320998 None:intergenic 35.0%
CTCATTTATGCTACATCAAG+AGG - chr3_1:50320977-50320996 Msa0360720:CDS 35.0%
GATCCCCTATTATTACTGAA+GGG + chr3_1:50321098-50321117 None:intergenic 35.0%
AGATCCCCTATTATTACTGA+AGG + chr3_1:50321099-50321118 None:intergenic 35.0%
! AATGAGGGACTCTTTTAACA+TGG + chr3_1:50321175-50321194 None:intergenic 35.0%
ATGTTAAAAGAGTCCCTCAT+TGG - chr3_1:50321174-50321193 Msa0360720:CDS 35.0%
!! CCACTTTTAAACACATGTTC+AGG + chr3_1:50321211-50321230 None:intergenic 35.0%
CCTGAACATGTGTTTAAAAG+TGG - chr3_1:50321208-50321227 Msa0360720:CDS 35.0%
GAACATGTGTTTAAAAGTGG+GGG - chr3_1:50321211-50321230 Msa0360720:CDS 35.0%
TTTGGAAGGAGTTACTCAAA+TGG - chr3_1:50321316-50321335 Msa0360720:CDS 35.0%
TTGGAAGGAGTTACTCAAAT+GGG - chr3_1:50321317-50321336 Msa0360720:CDS 35.0%
TAGTATATTGGCAAGGAATG+AGG + chr3_1:50321536-50321555 None:intergenic 35.0%
TTACATGATAGTCCCTTAAG+AGG + chr3_1:50321600-50321619 None:intergenic 35.0%
!!! CAAAGTTTTGAAGTGCATAG+GGG + chr3_1:50321693-50321712 None:intergenic 35.0%
!!! CCAAAGTTTTGAAGTGCATA+GGG + chr3_1:50321694-50321713 None:intergenic 35.0%
!!! ACCAAAGTTTTGAAGTGCAT+AGG + chr3_1:50321695-50321714 None:intergenic 35.0%
! TTGGTGAGTACGACTTTTTA+TGG - chr3_1:50321710-50321729 Msa0360720:CDS 35.0%
AGTTCCACTCATAAAAGACA+TGG + chr3_1:50321829-50321848 None:intergenic 35.0%
! ACAATTCTTTTCGACGTTCT+AGG - chr3_1:50321954-50321973 Msa0360720:CDS 35.0%
ATGCATCATCTATGTTTGTG+AGG - chr3_1:50322022-50322041 Msa0360720:five_prime_UTR 35.0%
TGCATCATCTATGTTTGTGA+GGG - chr3_1:50322023-50322042 Msa0360720:five_prime_UTR 35.0%
GAGGATCTATCCAAATAATC+AGG - chr3_1:50322187-50322206 Msa0360720:intron 35.0%
CTCCGAAAAACCTGATTATT+TGG + chr3_1:50322200-50322219 None:intergenic 35.0%
! AAGCAATGTTTTACAGAAGC+AGG + chr3_1:50322370-50322389 None:intergenic 35.0%
TCAATGTATTCACGGATGAT+TGG + chr3_1:50322573-50322592 None:intergenic 35.0%
! ACTATGTTGTCAGAAGGTAT+CGG + chr3_1:50322634-50322653 None:intergenic 35.0%
GATTTCACTATGTTGTCAGA+AGG + chr3_1:50322640-50322659 None:intergenic 35.0%
TCAATGTATTCACGGATGAT+TGG + chr3_1:50322573-50322592 None:intergenic 35.0%
! CTATACTTGTCAGAAGGTAT+CGG + chr3_1:50322771-50322790 None:intergenic 35.0%
AATTAAGGGCCTGTTTGGAT+TGG + chr3_1:50314371-50314390 None:intergenic 40.0%
! TGAGTTGAAATGAGTGTGGT+AGG - chr3_1:50314640-50314659 Msa0360720:intron 40.0%
GAGTTGAAATGAGTGTGGTA+GGG - chr3_1:50314641-50314660 Msa0360720:intron 40.0%
! TGAGAACTGTGTTATTGCTG+TGG - chr3_1:50314678-50314697 Msa0360720:intron 40.0%
! CTTGCGATATGGTTGACTTT+GGG + chr3_1:50314828-50314847 None:intergenic 40.0%
! ACTTGCGATATGGTTGACTT+TGG + chr3_1:50314829-50314848 None:intergenic 40.0%
! GAGATTTCTGGATCCTGATA+TGG - chr3_1:50314867-50314886 Msa0360720:intron 40.0%
TCTGGATCCTGATATGGAAA+AGG - chr3_1:50314873-50314892 Msa0360720:intron 40.0%
TCCCTCTTGAAACTTCTCAA+GGG - chr3_1:50314908-50314927 Msa0360720:intron 40.0%
CCAATAACACAATCCGAGAT+GGG + chr3_1:50315057-50315076 None:intergenic 40.0%
ACCAATAACACAATCCGAGA+TGG + chr3_1:50315058-50315077 None:intergenic 40.0%
ACTGCAACTGCTCTTAGTTA+TGG - chr3_1:50315171-50315190 Msa0360720:intron 40.0%
! ATGCTTTTGACAGGAGCTTA+GGG - chr3_1:50315316-50315335 Msa0360720:intron 40.0%
!!! AGTTTTGAGTGCAAATCCAG+AGG - chr3_1:50315467-50315486 Msa0360720:intron 40.0%
GCTAAATATCGAGTGTCTGA+TGG - chr3_1:50315494-50315513 Msa0360720:intron 40.0%
AGCATTAATTGAAGCAGGCT+TGG - chr3_1:50315608-50315627 Msa0360720:intron 40.0%
TGCAGAGAAGATTTCTTCTG+TGG - chr3_1:50315632-50315651 Msa0360720:intron 40.0%
ATTTCTTCTGTGGAGCTAGT+TGG - chr3_1:50315642-50315661 Msa0360720:intron 40.0%
GTTGTTAAATGGAAGCGATG+GGG - chr3_1:50315884-50315903 Msa0360720:intron 40.0%
TCACAAATTGCATATGGCAG+TGG + chr3_1:50315945-50315964 None:intergenic 40.0%
CTGCCATATGCAATTTGTGA+AGG - chr3_1:50315945-50315964 Msa0360720:intron 40.0%
CATCGACAACACTGATCATT+GGG - chr3_1:50316033-50316052 Msa0360720:intron 40.0%
AAAAAACCAAGTTGCTGCCT+AGG - chr3_1:50316093-50316112 Msa0360720:intron 40.0%
CTGCCTAGGTTTATCCTTAA+AGG - chr3_1:50316107-50316126 Msa0360720:intron 40.0%
CGAATTTCTGATAGACCAGA+TGG - chr3_1:50316328-50316347 Msa0360720:CDS 40.0%
! TTTGGGAAAAGTACACCATC+TGG + chr3_1:50316346-50316365 None:intergenic 40.0%
! GATGGTGTACTTTTCCCAAA+AGG - chr3_1:50316346-50316365 Msa0360720:CDS 40.0%
! TTGGAATGAGATGGCCTTTT+GGG + chr3_1:50316363-50316382 None:intergenic 40.0%
!! ACAAATCAGTTGGCTTGGAT+GGG + chr3_1:50316399-50316418 None:intergenic 40.0%
TCCAAATGGGACAAATCAGT+TGG + chr3_1:50316409-50316428 None:intergenic 40.0%
TGCGTAGAAAGCTTCCAAAT+GGG + chr3_1:50316422-50316441 None:intergenic 40.0%
TTGCGTAGAAAGCTTCCAAA+TGG + chr3_1:50316423-50316442 None:intergenic 40.0%
AATGAACATGAACTACCACC+TGG - chr3_1:50316442-50316461 Msa0360720:intron 40.0%
!! ATTTTTGGAAACGTTCCAGG+TGG + chr3_1:50316460-50316479 None:intergenic 40.0%
CAATAACTAACAAGGAAGGG+GGG + chr3_1:50316583-50316602 None:intergenic 40.0%
GCAATAACTAACAAGGAAGG+GGG + chr3_1:50316584-50316603 None:intergenic 40.0%
CGCAATAACTAACAAGGAAG+GGG + chr3_1:50316585-50316604 None:intergenic 40.0%
GCGCAATAACTAACAAGGAA+GGG + chr3_1:50316586-50316605 None:intergenic 40.0%
TGCGCAATAACTAACAAGGA+AGG + chr3_1:50316587-50316606 None:intergenic 40.0%
AGCATGCGCAATAACTAACA+AGG + chr3_1:50316591-50316610 None:intergenic 40.0%
AAGCTATGAAGCCTAGATAG+TGG - chr3_1:50316823-50316842 Msa0360720:CDS 40.0%
ACGGAGTATGCTTGTAAAGA+GGG - chr3_1:50316977-50316996 Msa0360720:intron 40.0%
CATGTTTCAAGAAGTTCTCG+GGG - chr3_1:50317344-50317363 Msa0360720:intron 40.0%
! TATGAGTATGGTGTCGGATA+CGG - chr3_1:50317441-50317460 Msa0360720:intron 40.0%
AGCTTATAGACTATGAAGCC+TGG + chr3_1:50317512-50317531 None:intergenic 40.0%
CCTAATTCAGAAATAGGGTG+AGG + chr3_1:50317640-50317659 None:intergenic 40.0%
!! CCTCACCCTATTTCTGAATT+AGG - chr3_1:50317637-50317656 Msa0360720:intron 40.0%
TACATTACCTGCATGCATAC+AGG - chr3_1:50317846-50317865 Msa0360720:intron 40.0%
ATAACAACCTGTATGCATGC+AGG + chr3_1:50317856-50317875 None:intergenic 40.0%
CGAGTTCAACTAAATCTGCA+TGG - chr3_1:50317957-50317976 Msa0360720:CDS 40.0%
ATTCAGCTACAGTAAGTAGG+AGG - chr3_1:50317994-50318013 Msa0360720:CDS 40.0%
! GTCATGCACAAACTTTTGTG+TGG - chr3_1:50318068-50318087 Msa0360720:CDS 40.0%
! ATTGGTACTATCTGAGGTCT+CGG + chr3_1:50318164-50318183 None:intergenic 40.0%
AGTACCAATTCTGTTGCCAA+TGG - chr3_1:50318175-50318194 Msa0360720:intron 40.0%
GAAAAGATAAGGCGAACAGA+AGG - chr3_1:50318582-50318601 Msa0360720:intron 40.0%
!!! AGATCAAGTGTTGTCGGTTT+TGG - chr3_1:50318941-50318960 Msa0360720:intron 40.0%
! CAATGAGTTGGCTAGAGATA+TGG + chr3_1:50319175-50319194 None:intergenic 40.0%
! GGAAGTGCAAATGTTATGTG+GGG + chr3_1:50319318-50319337 None:intergenic 40.0%
!!! GGTTTTAGAGGGAGGTTTTT+GGG + chr3_1:50319349-50319368 None:intergenic 40.0%
!!! AGGTTTTAGAGGGAGGTTTT+TGG + chr3_1:50319350-50319369 None:intergenic 40.0%
!! CTTCCAACACAAGGTTTTAG+AGG + chr3_1:50319361-50319380 None:intergenic 40.0%
!! ATCAAGTGCTGACACTTGAA+GGG + chr3_1:50319399-50319418 None:intergenic 40.0%
GAAGAGAAGAATCCACAGTA+GGG + chr3_1:50319430-50319449 None:intergenic 40.0%
TTTACTAAAGGGTCGTGAGT+CGG + chr3_1:50319634-50319653 None:intergenic 40.0%
TAGATATGACATCCCTCTCT+TGG + chr3_1:50319848-50319867 None:intergenic 40.0%
AAGAGAGGGATGTCATATCT+AGG - chr3_1:50319847-50319866 Msa0360720:intron 40.0%
!! TCTACTATTTCTGTAGCTGG+TGG - chr3_1:50320019-50320038 Msa0360720:intron 40.0%
! TGGTGGATCCAATTGAGATT+CGG - chr3_1:50320036-50320055 Msa0360720:intron 40.0%
!!! TTCTTTTTTCTGGGGTGGAA+CGG + chr3_1:50320141-50320160 None:intergenic 40.0%
TTAGCAATGAAGCAGAGCAT+TGG - chr3_1:50320258-50320277 Msa0360720:CDS 40.0%
AAGATTGGGTCGACATTCTT+AGG + chr3_1:50320317-50320336 None:intergenic 40.0%
AGAATGTCGACCCAATCTTA+TGG - chr3_1:50320318-50320337 Msa0360720:CDS 40.0%
GAGACAAATCACCTCATAAC+TGG - chr3_1:50320603-50320622 Msa0360720:intron 40.0%
! CTCACATGACATCTTTTGCT+TGG - chr3_1:50320717-50320736 Msa0360720:intron 40.0%
GGATTCACAAGACTATTGGT+TGG + chr3_1:50320849-50320868 None:intergenic 40.0%
GAGTAGAATGACAGAGCAAA+GGG + chr3_1:50321047-50321066 None:intergenic 40.0%
TGAGTAGAATGACAGAGCAA+AGG + chr3_1:50321048-50321067 None:intergenic 40.0%
GGTGCCCTTCAGTAATAATA+GGG - chr3_1:50321091-50321110 Msa0360720:CDS 40.0%
GTGCCCTTCAGTAATAATAG+GGG - chr3_1:50321092-50321111 Msa0360720:CDS 40.0%
AAGGAGTTACTCAAATGGGT+GGG - chr3_1:50321321-50321340 Msa0360720:CDS 40.0%
! TATCTCAGCCCAAACCTTTT+TGG - chr3_1:50321410-50321429 Msa0360720:CDS 40.0%
! ATCTCAGCCCAAACCTTTTT+GGG - chr3_1:50321411-50321430 Msa0360720:CDS 40.0%
GCCAATTCCCAAAAAGGTTT+GGG + chr3_1:50321421-50321440 None:intergenic 40.0%
TGCCAATTCCCAAAAAGGTT+TGG + chr3_1:50321422-50321441 None:intergenic 40.0%
!! ACCTTTTTGGGAATTGGCAA+AGG - chr3_1:50321423-50321442 Msa0360720:CDS 40.0%
ACCTTTGCCAATTCCCAAAA+AGG + chr3_1:50321427-50321446 None:intergenic 40.0%
!! AGGTGCTGACTATATTTCTC+TGG - chr3_1:50321469-50321488 Msa0360720:CDS 40.0%
GCTGATGTAGTATATTGGCA+AGG + chr3_1:50321543-50321562 None:intergenic 40.0%
!!! TTTTGAAGTGCATAGGGGAA+GGG + chr3_1:50321688-50321707 None:intergenic 40.0%
CCCTATGCACTTCAAAACTT+TGG - chr3_1:50321691-50321710 Msa0360720:CDS 40.0%
GTCTATGAGAGGAGAGTTTA+TGG + chr3_1:50321748-50321767 None:intergenic 40.0%
! GCAACCATGTCTTTTATGAG+TGG - chr3_1:50321822-50321841 Msa0360720:CDS 40.0%
!! TTTGTGAGGGAGTGTTGATA+GGG - chr3_1:50322036-50322055 Msa0360720:five_prime_UTR 40.0%
!! ATCAGGTTTTTCGGAGTTGA+TGG - chr3_1:50322204-50322223 Msa0360720:intron 40.0%
TGCACAACATAGTGAAATCC+AGG - chr3_1:50322477-50322496 Msa0360720:intron 40.0%
TTGTCATCTTCGTCTTCTGA+AGG + chr3_1:50322506-50322525 None:intergenic 40.0%
TCTTTGTCATCTTCGTCTTC+TGG + chr3_1:50322509-50322528 None:intergenic 40.0%
CGAAGATGACAAAGACAAGT+TGG - chr3_1:50322541-50322560 Msa0360720:intron 40.0%
CATCCGTGAATACATTGATG+AGG - chr3_1:50322575-50322594 Msa0360720:intron 40.0%
CTGACAACATAGTGAAATCC+AGG - chr3_1:50322641-50322660 Msa0360720:intron 40.0%
TTGTCATCTTCGTCTTCTGA+AGG + chr3_1:50322506-50322525 None:intergenic 40.0%
CGAAGATGACAAAGACAAGT+TGG - chr3_1:50322541-50322560 Msa0360720:intron 40.0%
CATCCGTGAATACATTGATG+AGG - chr3_1:50322575-50322594 Msa0360720:intron 40.0%
! CTTGTGAATGGTGACGATTG+CGG + chr3_1:50313893-50313912 None:intergenic 45.0%
AGTGTGGTAGGGTTTGACAT+TGG - chr3_1:50314652-50314671 Msa0360720:intron 45.0%
CTCCCTCTTGAAACTTCTCA+AGG - chr3_1:50314907-50314926 Msa0360720:intron 45.0%
GCCCTTGAGAAGTTTCAAGA+GGG + chr3_1:50314912-50314931 None:intergenic 45.0%
TCTTGAAACTTCTCAAGGGC+CGG - chr3_1:50314912-50314931 Msa0360720:intron 45.0%
TGAAACAAAACGCCACCATC+CGG + chr3_1:50314934-50314953 None:intergenic 45.0%
!! AGATTTGGAGGTACCCATCT+CGG - chr3_1:50315041-50315060 Msa0360720:intron 45.0%
CCCATCTCGGATTGTGTTAT+TGG - chr3_1:50315054-50315073 Msa0360720:intron 45.0%
GCAAGTCGGTGAAGTATGAT+GGG + chr3_1:50315083-50315102 None:intergenic 45.0%
TGCAAGTCGGTGAAGTATGA+TGG + chr3_1:50315084-50315103 None:intergenic 45.0%
TTGACGCGGCAATAATTGCT+GGG - chr3_1:50315118-50315137 Msa0360720:intron 45.0%
CAGTCGTGTATCAGTCTCAA+AGG + chr3_1:50315150-50315169 None:intergenic 45.0%
! TGCATTGCAGCGTTTGAGTT+TGG - chr3_1:50315273-50315292 Msa0360720:intron 45.0%
! GCATTGCAGCGTTTGAGTTT+GGG - chr3_1:50315274-50315293 Msa0360720:intron 45.0%
! CGTTTGAGTTTGGGCAAATG+AGG - chr3_1:50315283-50315302 Msa0360720:intron 45.0%
! CATGCTTTTGACAGGAGCTT+AGG - chr3_1:50315315-50315334 Msa0360720:intron 45.0%
! TGCTTTTGACAGGAGCTTAG+GGG - chr3_1:50315317-50315336 Msa0360720:intron 45.0%
CTAATGCCAAGGCTTGCATT+AGG - chr3_1:50315415-50315434 Msa0360720:intron 45.0%
! AGCTAGTTGGTTCAGGTTCT+AGG - chr3_1:50315655-50315674 Msa0360720:intron 45.0%
CTTGCATTCAACTTTCGGCT+CGG + chr3_1:50315726-50315745 None:intergenic 45.0%
TATTCTCGCACACGGTATGT+GGG + chr3_1:50315795-50315814 None:intergenic 45.0%
AAACCTCGTATTCTCGCACA+CGG + chr3_1:50315803-50315822 None:intergenic 45.0%
TTTGTGAAGGGATCTCACCA+TGG - chr3_1:50315958-50315977 Msa0360720:intron 45.0%
AAACATGCCATTGCAGCCTA+TGG + chr3_1:50315989-50316008 None:intergenic 45.0%
GCTGCAATGGCATGTTTATG+TGG - chr3_1:50315992-50316011 Msa0360720:intron 45.0%
ATGATCAGTGTTGTCGATGG+CGG + chr3_1:50316032-50316051 None:intergenic 45.0%
CCAATGATCAGTGTTGTCGA+TGG + chr3_1:50316035-50316054 None:intergenic 45.0%
CCATCGACAACACTGATCAT+TGG - chr3_1:50316032-50316051 Msa0360720:intron 45.0%
GATAAACCTAGGCAGCAACT+TGG + chr3_1:50316102-50316121 None:intergenic 45.0%
TCTCATGTTTGTTCAGGTCC+AGG - chr3_1:50316264-50316283 Msa0360720:intron 45.0%
! CTTGGAATGAGATGGCCTTT+TGG + chr3_1:50316364-50316383 None:intergenic 45.0%
CCACAGTACTTGGAATGAGA+TGG + chr3_1:50316372-50316391 None:intergenic 45.0%
! CCATCTCATTCCAAGTACTG+TGG - chr3_1:50316369-50316388 Msa0360720:CDS 45.0%
!! GACAAATCAGTTGGCTTGGA+TGG + chr3_1:50316400-50316419 None:intergenic 45.0%
ATGGGACAAATCAGTTGGCT+TGG + chr3_1:50316404-50316423 None:intergenic 45.0%
!! GCCAACTGATTTGTCCCATT+TGG - chr3_1:50316405-50316424 Msa0360720:intron 45.0%
CTAAACTGAGCATACCGTGA+AGG + chr3_1:50316488-50316507 None:intergenic 45.0%
AGCTCAAAAGGGAAAGCTCT+TGG + chr3_1:50316778-50316797 None:intergenic 45.0%
GGTATGGTAAGATGCGTACA+AGG - chr3_1:50316863-50316882 Msa0360720:intron 45.0%
GACGGAGTATGCTTGTAAAG+AGG - chr3_1:50316976-50316995 Msa0360720:intron 45.0%
GTATCCGACACCATACTCAT+AGG + chr3_1:50317442-50317461 None:intergenic 45.0%
AGGACCGATCTGAAAAGAAG+TGG + chr3_1:50317898-50317917 None:intergenic 45.0%
TTTCAGATCGGTCCTATGCA+TGG - chr3_1:50317903-50317922 Msa0360720:CDS 45.0%
CTACCTTGAGATCCATGCAT+AGG + chr3_1:50317918-50317937 None:intergenic 45.0%
GCATGGATCTCAAGGTAGTA+AGG - chr3_1:50317920-50317939 Msa0360720:CDS 45.0%
TGTGTGGCTTCAGTTGATCA+AGG - chr3_1:50318084-50318103 Msa0360720:intron 45.0%
TCAGTTGATCAAGGATCGCA+CGG - chr3_1:50318093-50318112 Msa0360720:intron 45.0%
AGAACTCCAGTTAGCTCAAC+AGG - chr3_1:50318676-50318695 Msa0360720:CDS 45.0%
CTCATAGACATAGGACTCCA+AGG + chr3_1:50318738-50318757 None:intergenic 45.0%
AGTCCTATGTCTATGAGACG+AGG - chr3_1:50318741-50318760 Msa0360720:CDS 45.0%
ACTCCTCGTCTCATAGACAT+AGG + chr3_1:50318747-50318766 None:intergenic 45.0%
TGTCTATGAGACGAGGAGTA+AGG - chr3_1:50318748-50318767 Msa0360720:intron 45.0%
GTTTATGCAGTCAGACACTG+AGG - chr3_1:50318859-50318878 Msa0360720:intron 45.0%
! GATGGTAGTCAAAGCACTAG+AGG + chr3_1:50319252-50319271 None:intergenic 45.0%
GTGCTTTGACTACCATCCAT+AGG - chr3_1:50319255-50319274 Msa0360720:intron 45.0%
ACCATCCATAGGATCTTCTC+CGG - chr3_1:50319266-50319285 Msa0360720:intron 45.0%
AAACACCGGAGAAGATCCTA+TGG + chr3_1:50319274-50319293 None:intergenic 45.0%
GCACATGGGGATTAAAACAC+CGG + chr3_1:50319288-50319307 None:intergenic 45.0%
!!! CAACACAAGGTTTTAGAGGG+AGG + chr3_1:50319357-50319376 None:intergenic 45.0%
!! CTCCCTCTAAAACCTTGTGT+TGG - chr3_1:50319355-50319374 Msa0360720:intron 45.0%
ACAACGGATCTTCCAACACA+AGG + chr3_1:50319370-50319389 None:intergenic 45.0%
!! GATCAAGTGCTGACACTTGA+AGG + chr3_1:50319400-50319419 None:intergenic 45.0%
CGAAGAGAAGAATCCACAGT+AGG + chr3_1:50319431-50319450 None:intergenic 45.0%
GGATATCATTAGGGGTTAGG+AGG + chr3_1:50319458-50319477 None:intergenic 45.0%
TTACTAAAGGGTCGTGAGTC+GGG + chr3_1:50319633-50319652 None:intergenic 45.0%
CTTTGCTAGTGACCAAGAGA+GGG - chr3_1:50319833-50319852 Msa0360720:intron 45.0%
TAGGAGTTTGCAAGAGACTG+AGG - chr3_1:50319866-50319885 Msa0360720:intron 45.0%
GTTTGCAAGAGACTGAGGAT+TGG - chr3_1:50319871-50319890 Msa0360720:intron 45.0%
!! GACTGAGGATTGGCTTTATG+AGG - chr3_1:50319881-50319900 Msa0360720:intron 45.0%
!! GAGGATTGGCTTTATGAGGA+CGG - chr3_1:50319885-50319904 Msa0360720:intron 45.0%
TCCACCCCAGAAAAAAGAAC+AGG - chr3_1:50320142-50320161 Msa0360720:intron 45.0%
!!! ACCTGTTCTTTTTTCTGGGG+TGG + chr3_1:50320146-50320165 None:intergenic 45.0%
!! AGAGCATTGGCTAACAGAGA+AGG - chr3_1:50320271-50320290 Msa0360720:CDS 45.0%
TCTGACTACTTCTCATTGCG+AGG - chr3_1:50320581-50320600 Msa0360720:intron 45.0%
CTGGTTGTCATCCAGTTATG+AGG + chr3_1:50320617-50320636 None:intergenic 45.0%
!! CATTTTGACAGTAGGTCCTC+TGG + chr3_1:50320645-50320664 None:intergenic 45.0%
AAATGCTAGATGTGCCCACA+TGG - chr3_1:50320660-50320679 Msa0360720:intron 45.0%
AATGCTAGATGTGCCCACAT+GGG - chr3_1:50320661-50320680 Msa0360720:intron 45.0%
ATTCGTGTAATGGCCCATGT+GGG + chr3_1:50320677-50320696 None:intergenic 45.0%
AATTCGTGTAATGGCCCATG+TGG + chr3_1:50320678-50320697 None:intergenic 45.0%
GATGTCATGTGAGTTTCCCA+TGG + chr3_1:50320710-50320729 None:intergenic 45.0%
!!! TCTCTGGTTGGCCCTTTTTT+TGG - chr3_1:50320776-50320795 Msa0360720:intron 45.0%
TGCTAGAATGGCACCTAGTT+TGG + chr3_1:50321018-50321037 None:intergenic 45.0%
! AAAGGGCTGTGTTGCTAGAA+TGG + chr3_1:50321030-50321049 None:intergenic 45.0%
GGGTGCCCTTCAGTAATAAT+AGG - chr3_1:50321090-50321109 Msa0360720:CDS 45.0%
GAAGGAGTTACTCAAATGGG+TGG - chr3_1:50321320-50321339 Msa0360720:CDS 45.0%
CTCAACTGCTGATGAGCATA+TGG - chr3_1:50321346-50321365 Msa0360720:CDS 45.0%
CATATGGTTACCTTGCGATC+TGG - chr3_1:50321362-50321381 Msa0360720:CDS 45.0%
!! GCCCAAACCTTTTTGGGAAT+TGG - chr3_1:50321417-50321436 Msa0360720:CDS 45.0%
AACTCAGAGCGACCTCTTAA+GGG - chr3_1:50321585-50321604 Msa0360720:CDS 45.0%
!!! GTTTTGAAGTGCATAGGGGA+AGG + chr3_1:50321689-50321708 None:intergenic 45.0%
! GAGTACGACTTTTTATGGCC+AGG - chr3_1:50321715-50321734 Msa0360720:CDS 45.0%
AGAGTTTATGGAAGTGGTCC+TGG + chr3_1:50321736-50321755 None:intergenic 45.0%
GAGAGGAGAGTTTATGGAAG+TGG + chr3_1:50321742-50321761 None:intergenic 45.0%
!! GTTTGTGAGGGAGTGTTGAT+AGG - chr3_1:50322035-50322054 Msa0360720:five_prime_UTR 45.0%
!!! GTCTGTTGACGGATTTTCAG+AGG - chr3_1:50322452-50322471 Msa0360720:intron 45.0%
GCGCCTCATCAATGTATTCA+CGG + chr3_1:50322581-50322600 None:intergenic 45.0%
GCGCCTCATCAATGTATTCA+CGG + chr3_1:50322581-50322600 None:intergenic 45.0%
CGCAATCGTCACCATTCACA+AGG - chr3_1:50313891-50313910 Msa0360720:intron 50.0%
!! ATTGCTGTGGCAAAGCATCG+CGG - chr3_1:50314691-50314710 Msa0360720:intron 50.0%
! GCGAGAAGCAGCGGTTTTTA+GGG - chr3_1:50314773-50314792 Msa0360720:intron 50.0%
GGCCCTTGAGAAGTTTCAAG+AGG + chr3_1:50314913-50314932 None:intergenic 50.0%
!! ACTTCACCGACTTGCAGAGA+CGG - chr3_1:50315088-50315107 Msa0360720:intron 50.0%
ATATGCCCGTCTCTGCAAGT+CGG + chr3_1:50315097-50315116 None:intergenic 50.0%
CTTGACGCGGCAATAATTGC+TGG - chr3_1:50315117-50315136 Msa0360720:intron 50.0%
CATTGGTCAATGCGACACTC+AGG - chr3_1:50315248-50315267 Msa0360720:intron 50.0%
! GCTTTTGACAGGAGCTTAGG+GGG - chr3_1:50315318-50315337 Msa0360720:intron 50.0%
! CTTTTGACAGGAGCTTAGGG+GGG - chr3_1:50315319-50315338 Msa0360720:intron 50.0%
TCGATATTTAGCGGTGCCTC+TGG + chr3_1:50315486-50315505 None:intergenic 50.0%
! TCTGTGGAGCTAGTTGGTTC+AGG - chr3_1:50315648-50315667 Msa0360720:intron 50.0%
GTATTCTCGCACACGGTATG+TGG + chr3_1:50315796-50315815 None:intergenic 50.0%
ATACCGTGTGCGAGAATACG+AGG - chr3_1:50315797-50315816 Msa0360720:intron 50.0%
AGTACCACACCACTACACCA+TGG + chr3_1:50315913-50315932 None:intergenic 50.0%
GATGGGAAGACCACAGTACT+TGG + chr3_1:50316382-50316401 None:intergenic 50.0%
TTGCGCATGCTCTTCTGTCT+TGG - chr3_1:50316600-50316619 Msa0360720:CDS 50.0%
! TAGGGTGAGGTGTCTTGCAA+TGG + chr3_1:50317627-50317646 None:intergenic 50.0%
GGTCCTATGCATGGATCTCA+AGG - chr3_1:50317912-50317931 Msa0360720:CDS 50.0%
! CTATCTGAGGTCTCGGACTT+AGG + chr3_1:50318157-50318176 None:intergenic 50.0%
AGCGCCATTGGCAACAGAAT+TGG + chr3_1:50318182-50318201 None:intergenic 50.0%
GGTACTATCTTCAGCGCCAT+TGG + chr3_1:50318194-50318213 None:intergenic 50.0%
CTCTGTCCTGTTGAGCTAAC+TGG + chr3_1:50318685-50318704 None:intergenic 50.0%
TGAGACGAGGAGTAAGGTAC+TGG - chr3_1:50318754-50318773 Msa0360720:intron 50.0%
! AGTCAAAGCACTAGAGGCAG+AGG + chr3_1:50319246-50319265 None:intergenic 50.0%
ACCGGAGAAGATCCTATGGA+TGG + chr3_1:50319270-50319289 None:intergenic 50.0%
TGTGGGGTAAGATGGCACAT+GGG + chr3_1:50319302-50319321 None:intergenic 50.0%
ATGTGGGGTAAGATGGCACA+TGG + chr3_1:50319303-50319322 None:intergenic 50.0%
TGATCCACAGAACCCTACTG+TGG - chr3_1:50319415-50319434 Msa0360720:intron 50.0%
GAATCCACAGTAGGGTTCTG+TGG + chr3_1:50319422-50319441 None:intergenic 50.0%
GCTTTGCTAGTGACCAAGAG+AGG - chr3_1:50319832-50319851 Msa0360720:intron 50.0%
GCGCAATAGAGGAGCTAAAC+AGG - chr3_1:50320357-50320376 Msa0360720:CDS 50.0%
ATGACAACCAGCCTTTCCAG+AGG - chr3_1:50320626-50320645 Msa0360720:intron 50.0%
! TGACAGTAGGTCCTCTGGAA+AGG + chr3_1:50320640-50320659 None:intergenic 50.0%
TTGAGTCTCCTCTCACTCTC+TGG - chr3_1:50320760-50320779 Msa0360720:intron 50.0%
GTCCCTCATTGGATGTGAGA+TGG - chr3_1:50321185-50321204 Msa0360720:CDS 50.0%
GGCCATCTCACATCCAATGA+GGG + chr3_1:50321190-50321209 None:intergenic 50.0%
AGGCCATCTCACATCCAATG+AGG + chr3_1:50321191-50321210 None:intergenic 50.0%
ACAAAACTGGCTGTGAGGTG+AGG + chr3_1:50321241-50321260 None:intergenic 50.0%
TGTGGTTGGGCACACAAAAC+TGG + chr3_1:50321254-50321273 None:intergenic 50.0%
AGCACGTTAACCAGATCGCA+AGG + chr3_1:50321375-50321394 None:intergenic 50.0%
AAAGGTTGCAGTAAGCCAGC+TGG - chr3_1:50321441-50321460 Msa0360720:CDS 50.0%
CAGTAAGCCAGCTGGAGTTA+AGG - chr3_1:50321449-50321468 Msa0360720:CDS 50.0%
! GAGGTCGCTCTGAGTTCTTT+AGG + chr3_1:50321581-50321600 None:intergenic 50.0%
GAACTCAGAGCGACCTCTTA+AGG - chr3_1:50321584-50321603 Msa0360720:CDS 50.0%
TCTCCTCTCATAGACTGACC+TGG - chr3_1:50321753-50321772 Msa0360720:CDS 50.0%
GAACCAGGTCAGTCTATGAG+AGG + chr3_1:50321759-50321778 None:intergenic 50.0%
!! TTCGTCTTCTGAAGGTGTCC+TGG + chr3_1:50322498-50322517 None:intergenic 50.0%
!! TTCGTCTTCTGAAGGTGTCC+TGG + chr3_1:50322498-50322517 None:intergenic 50.0%
!! TTGCTGTGGCAAAGCATCGC+GGG - chr3_1:50314692-50314711 Msa0360720:intron 55.0%
TCTGCTTTGGCGAGAAGCAG+CGG - chr3_1:50314764-50314783 Msa0360720:intron 55.0%
! GGCGAGAAGCAGCGGTTTTT+AGG - chr3_1:50314772-50314791 Msa0360720:intron 55.0%
!!! CAGCGGTTTTTAGGGTCTGC+TGG - chr3_1:50314781-50314800 Msa0360720:intron 55.0%
GAAACTTCTCAAGGGCCGGA+TGG - chr3_1:50314916-50314935 Msa0360720:intron 55.0%
!! CTTCACCGACTTGCAGAGAC+GGG - chr3_1:50315089-50315108 Msa0360720:intron 55.0%
GAGACGGGCATATCTTGACG+CGG - chr3_1:50315104-50315123 Msa0360720:intron 55.0%
ACGCAGCCTAATGCAAGCCT+TGG + chr3_1:50315424-50315443 None:intergenic 55.0%
GCAAGTGAGTGTGTAGCTCG+TGG - chr3_1:50315741-50315760 Msa0360720:intron 55.0%
GTGAAGGGATCTCACCATGG+TGG - chr3_1:50315961-50315980 Msa0360720:intron 55.0%
!! TCAGTGTTGTCGATGGCGGA+AGG + chr3_1:50316028-50316047 None:intergenic 55.0%
!! GATGTTTCAGGAAGTGCCCG+AGG - chr3_1:50317096-50317115 Msa0360720:intron 55.0%
AGCTCAACAGGACAGAGCTG+TGG - chr3_1:50318688-50318707 Msa0360720:CDS 55.0%
GTGGGGTAAGATGGCACATG+GGG + chr3_1:50319301-50319320 None:intergenic 55.0%
!! GGAGGTTTTTGGGAGCCACA+AGG + chr3_1:50319339-50319358 None:intergenic 55.0%
! AGTAGGTCCTCTGGAAAGGC+TGG + chr3_1:50320636-50320655 None:intergenic 55.0%
GTCTCCTCTCACTCTCTGGT+TGG - chr3_1:50320764-50320783 Msa0360720:intron 55.0%
GGCACACAAAACTGGCTGTG+AGG + chr3_1:50321246-50321265 None:intergenic 55.0%
GTCAGCACCTTAACTCCAGC+TGG + chr3_1:50321459-50321478 None:intergenic 55.0%
ACCCCTGCTGTCGTCTGCTT+TGG - chr3_1:50314751-50314770 Msa0360720:intron 60.0%
GCCAAAGCAGACGACAGCAG+GGG + chr3_1:50314755-50314774 None:intergenic 60.0%
CGCCAAAGCAGACGACAGCA+GGG + chr3_1:50314756-50314775 None:intergenic 60.0%
TCGCCAAAGCAGACGACAGC+AGG + chr3_1:50314757-50314776 None:intergenic 60.0%
ACTTCTCAAGGGCCGGATGG+TGG - chr3_1:50314919-50314938 Msa0360720:intron 60.0%
TTGACAGGAGCTTAGGGGGG+AGG - chr3_1:50315322-50315341 Msa0360720:intron 60.0%
TGACAGGAGCTTAGGGGGGA+GGG - chr3_1:50315323-50315342 Msa0360720:intron 60.0%
ATGGGGCTGCCATGGTGTAG+TGG - chr3_1:50315901-50315920 Msa0360720:intron 60.0%
GCTGCCATGGTGTAGTGGTG+TGG - chr3_1:50315906-50315925 Msa0360720:intron 60.0%
! TCTCACCATGGTGGCGCCAT+AGG - chr3_1:50315970-50315989 Msa0360720:intron 60.0%
GGTCGTGAGTCGGGACAGAA+AGG + chr3_1:50319624-50319643 None:intergenic 60.0%
AGGGCCAACCAGAGAGTGAG+AGG + chr3_1:50320771-50320790 None:intergenic 60.0%
AGGGGGGAGGGACTTTGACG+AGG - chr3_1:50315335-50315354 Msa0360720:intron 65.0%
TGGAAGCGATGGGGCTGCCA+TGG - chr3_1:50315893-50315912 Msa0360720:intron 65.0%
TGCAGCCTATGGCGCCACCA+TGG + chr3_1:50315978-50315997 None:intergenic 65.0%
GGTGGCGCCATAGGCTGCAA+TGG - chr3_1:50315979-50315998 Msa0360720:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 50313834 50322836 50313834 ID=Msa0360720;Name=Msa0360720
chr3_1 mRNA 50313834 50322836 50313834 ID=Msa0360720-mRNA-1;Parent=Msa0360720;Name=Msa0360720-mRNA-1;_AED=0.11;_eAED=0.11;_QI=201|1|1|1|0.72|0.58|12|116|780
chr3_1 exon 50313834 50313899 50313834 ID=Msa0360720-mRNA-1:exon:8893;Parent=Msa0360720-mRNA-1
chr3_1 exon 50314037 50314198 50314037 ID=Msa0360720-mRNA-1:exon:8892;Parent=Msa0360720-mRNA-1
chr3_1 exon 50316292 50316422 50316292 ID=Msa0360720-mRNA-1:exon:8891;Parent=Msa0360720-mRNA-1
chr3_1 exon 50316507 50316635 50316507 ID=Msa0360720-mRNA-1:exon:8890;Parent=Msa0360720-mRNA-1
chr3_1 exon 50316711 50316857 50316711 ID=Msa0360720-mRNA-1:exon:8889;Parent=Msa0360720-mRNA-1
chr3_1 exon 50317901 50318101 50317901 ID=Msa0360720-mRNA-1:exon:8888;Parent=Msa0360720-mRNA-1
chr3_1 exon 50318430 50318573 50318430 ID=Msa0360720-mRNA-1:exon:8887;Parent=Msa0360720-mRNA-1
chr3_1 exon 50318666 50318761 50318666 ID=Msa0360720-mRNA-1:exon:8886;Parent=Msa0360720-mRNA-1
chr3_1 exon 50320178 50320390 50320178 ID=Msa0360720-mRNA-1:exon:8885;Parent=Msa0360720-mRNA-1
chr3_1 exon 50320852 50322123 50320852 ID=Msa0360720-mRNA-1:exon:8884;Parent=Msa0360720-mRNA-1
chr3_1 exon 50322151 50322170 50322151 ID=Msa0360720-mRNA-1:exon:8883;Parent=Msa0360720-mRNA-1
chr3_1 exon 50322758 50322836 50322758 ID=Msa0360720-mRNA-1:exon:8882;Parent=Msa0360720-mRNA-1
chr3_1 five_prime_UTR 50322758 50322836 50322758 ID=Msa0360720-mRNA-1:five_prime_utr;Parent=Msa0360720-mRNA-1
chr3_1 five_prime_UTR 50322151 50322170 50322151 ID=Msa0360720-mRNA-1:five_prime_utr;Parent=Msa0360720-mRNA-1
chr3_1 five_prime_UTR 50322022 50322123 50322022 ID=Msa0360720-mRNA-1:five_prime_utr;Parent=Msa0360720-mRNA-1
chr3_1 CDS 50320852 50322021 50320852 ID=Msa0360720-mRNA-1:cds;Parent=Msa0360720-mRNA-1
chr3_1 CDS 50320178 50320390 50320178 ID=Msa0360720-mRNA-1:cds;Parent=Msa0360720-mRNA-1
chr3_1 CDS 50318666 50318761 50318666 ID=Msa0360720-mRNA-1:cds;Parent=Msa0360720-mRNA-1
chr3_1 CDS 50318430 50318573 50318430 ID=Msa0360720-mRNA-1:cds;Parent=Msa0360720-mRNA-1
chr3_1 CDS 50317901 50318101 50317901 ID=Msa0360720-mRNA-1:cds;Parent=Msa0360720-mRNA-1
chr3_1 CDS 50316711 50316857 50316711 ID=Msa0360720-mRNA-1:cds;Parent=Msa0360720-mRNA-1
chr3_1 CDS 50316507 50316635 50316507 ID=Msa0360720-mRNA-1:cds;Parent=Msa0360720-mRNA-1
chr3_1 CDS 50316292 50316422 50316292 ID=Msa0360720-mRNA-1:cds;Parent=Msa0360720-mRNA-1
chr3_1 CDS 50314087 50314198 50314087 ID=Msa0360720-mRNA-1:cds;Parent=Msa0360720-mRNA-1
chr3_1 three_prime_UTR 50314037 50314086 50314037 ID=Msa0360720-mRNA-1:three_prime_utr;Parent=Msa0360720-mRNA-1
chr3_1 three_prime_UTR 50313834 50313899 50313834 ID=Msa0360720-mRNA-1:three_prime_utr;Parent=Msa0360720-mRNA-1
Gene Sequence

>Msa0360720

ATGAGTGTGGTAGGGTTTGACATTGGTAATGAGAACTGTGTTATTGCTGTGGCAAAGCATCGCGGGATTGATGTTTTGTTGAATGATGAATCGAAACGGGAAACCCCTGCTGTCGTCTGCTTTGGCGAGAAGCAGCGGTTTTTAGGGTCTGCTGGTGCTGCTTCTGCTATGATGCACCCAAAGTCAACCATATCGCAAGTGAAGAGATTTATAGGCAGGAGATTTCTGGATCCTGATATGGAAAAGGATCTGAAAATGCTCCCTCTTGAAACTTCTCAAGGGCCGGATGGTGGCGTTTTGTTTCATTTGAAATACTTAGATGGGATTCATACGTTTACGCCAGTTCAAATAATGTCTATGCTCTTTGCTCACTTGAAGACTATGACAGAAAAAGATTTGGAGGTACCCATCTCGGATTGTGTTATTGGTATCCCATCATACTTCACCGACTTGCAGAGACGGGCATATCTTGACGCGGCAATAATTGCTGGGTTGAAGCCTTTGAGACTGATACACGACTGTACTGCAACTGCTCTTAGTTATGGAATTTACAAAACAAATTTTCAGAGTGATGGTCCAAGTTATGTTGCATTTATTGACATTGGTCAATGCGACACTCAGGTCTGCATTGCAGCGTTTGAGTTTGGGCAAATGAGGATACTTTCACATGCTTTTGACAGGAGCTTAGGGGGGAGGGACTTTGACGAGGTTCTGTTTACTCATTTTGCTGAAAAATTCAAGGAACAGTACAAAATTGATGTGTATTCTAATGCCAAGGCTTGCATTAGGCTGCGTGCTGCATGTGAGAAATTGAAGAAAGTTTTGAGTGCAAATCCAGAGGCACCGCTAAATATCGAGTGTCTGATGGATGAGAAAGATGTTAAGGGCTTTATAACAAGGGAAGAATTTGAGAATCTTGCATCTGGATTATTGGAGAGAATTTCAGTACCTTGCAACGAAGCATTAATTGAAGCAGGCTTGGATGCAGAGAAGATTTCTTCTGTGGAGCTAGTTGGTTCAGGTTCTAGGATTCCAGCAGTGAGTACATTATTATCTTCTTTATTCAAGAGAGAACCGAGCCGAAAGTTGAATGCAAGTGAGTGTGTAGCTCGTGGTTGTGCTCTACAGTGTGCTATGCTCAGTCCCACATACCGTGTGCGAGAATACGAGGTCCAGGATATTAGTCCTTTTTCATATGGACTTCAATCAGATAAAGTTCGAATTTCTGATAGACCAGATGGTGTACTTTTCCCAAAAGGCCATCTCATTCCAAGTACTGTGGTCTTCCCATCCAAGCCAACTGATTTGTCCCATTTGGAAGCTTTCTACGCAAATGAACATGAACTACCACCTGGAACGTTTCCAAAAATTAGTTCCTTCACGATCGGTCCTATGCATGGATCTCAAGGTAGTAAGGCAAAAGTTAAAGTTCGAGTTCAACTAAATCTGCATGGCATTTTCAGTATTGATTCAGCTACATTGATCAAGGATCGCACGGATGATCATCATTCAAATTTTGATGCAATGGATGTTGATCCTAAGTCCGAGACCTCAGATAGTACCAATTCTGTTGCCAATGGCGCTGAAGATAGTACCAATAAGTGTGATTCTCCACAAAGTTATGCAGATTGTCTAAGAAAAGATAAGGCGAACAGAAGGATTCCTATTGCAGTGAATGAGAATTTCTATGGTGGAATGACAATGGAAGAGATTTCTGAAGCCCATGAAAAAGAACTCCAGTTAGCTCAACAGGACAGAGCTGTGGAGCTAACCAAAGAAAAGAAGAACACCTTGGAGTCCTATGTCTATGAGACGAGGAGTAAGCTCTTCAACACATATCGGAGCTTTGCTAGTGACCAAGAGAGGGATGTCATATCTAGGAGTTTGCAAGAGACTGAGGATTGGCTTTATGAGGACGGTGATGATGAAACTGAACACGCTTATACCTCAAAACTAGAAGATCTGAAAAAGCTGGTGGATCCAATTGAGATTCGGTACAAAGATGATGAAGAAAGAACACAAGCTATAAATGATTTATCAAAATTCATTTCAGATATTCGCAAGTTTGCAGATTCCGTTCCACCCCAGAAAAAAGAACAGATCATTGATATTAGCAATGAAGCAGAGCATTGGCTAACAGAGAAGGTGCAACAACAAGAATCTTATCCTAAGAATGTCGACCCAATCTTATGGTCAAGTCATATTAAGAGCGCAATAGAGGAGCTAAACAGAGGAATGCACAACATAGTGAAATCCAGGACACCTTCAGAAGACGAAGATGACAAAGACAAGCCAGAAGACGAAGATGACAAAGACAAGTTGGATTCTTCCAATCATCCGTGA
Protein sequence

>Msa0360720

MSVVGFDIGNENCVIAVAKHRGIDVLLNDESKRETPAVVCFGEKQRFLGSAGAASAMMHPKSTISQVKRFIGRRFLDPDMEKDLKMLPLETSQGPDGGVLFHLKYLDGIHTFTPVQIMSMLFAHLKTMTEKDLEVPISDCVIGIPSYFTDLQRRAYLDAAIIAGLKPLRLIHDCTATALSYGIYKTNFQSDGPSYVAFIDIGQCDTQVCIAAFEFGQMRILSHAFDRSLGGRDFDEVLFTHFAEKFKEQYKIDVYSNAKACIRLRAACEKLKKVLSANPEAPLNIECLMDEKDVKGFITREEFENLASGLLERISVPCNEALIEAGLDAEKISSVELVGSGSRIPAVSTLLSSLFKREPSRKLNASECVARGCALQCAMLSPTYRVREYEVQDISPFSYGLQSDKVRISDRPDGVLFPKGHLIPSTVVFPSKPTDLSHLEAFYANEHELPPGTFPKISSFTIGPMHGSQGSKAKVKVRVQLNLHGIFSIDSATLIKDRTDDHHSNFDAMDVDPKSETSDSTNSVANGAEDSTNKCDSPQSYADCLRKDKANRRIPIAVNENFYGGMTMEEISEAHEKELQLAQQDRAVELTKEKKNTLESYVYETRSKLFNTYRSFASDQERDVISRSLQETEDWLYEDGDDETEHAYTSKLEDLKKLVDPIEIRYKDDEERTQAINDLSKFISDIRKFADSVPPQKKEQIIDISNEAEHWLTEKVQQQESYPKNVDPILWSSHIKSAIEELNRGMHNIVKSRTPSEDEDDKDKPEDEDDKDKLDSSNHP*