Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0100290 | XP_013465831.1 | 96.958 | 263 | 7 | 1 | 1 | 263 | 1 | 262 | 0.0 | 532 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0100290 | sp|Q39262|ZFP3_ARATH | 49.419 | 172 | 66 | 7 | 51 | 222 | 18 | 168 | 2.87e-38 | 137 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0100290 | A0A072VDM2 | 96.958 | 263 | 7 | 1 | 1 | 263 | 1 | 262 | 0.0 | 532 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001550 | Msa0100290 | -0.829473 | 5.049102e-55 | -8.615850e-47 |
| Msa0023480 | Msa0100290 | 0.806100 | 9.693604e-50 | -8.615850e-47 |
| Msa0046110 | Msa0100290 | -0.802576 | 5.253894e-49 | -8.615850e-47 |
| Msa0054920 | Msa0100290 | 0.953069 | 6.159542e-111 | -8.615850e-47 |
| Msa0090510 | Msa0100290 | 0.804314 | 2.292114e-49 | -8.615850e-47 |
| Msa0100290 | Msa0144530 | 0.921458 | 3.487277e-88 | -8.615850e-47 |
| Msa0100290 | Msa0241140 | 0.811044 | 8.522948e-51 | -8.615850e-47 |
| Msa0100290 | Msa0296050 | -0.824636 | 7.249995e-54 | -8.615850e-47 |
| Msa0100290 | Msa0333850 | -0.805550 | 1.264785e-49 | -8.615850e-47 |
| Msa0100290 | Msa0333970 | -0.816802 | 4.582849e-52 | -8.615850e-47 |
| Msa0100290 | Msa0374340 | -0.800621 | 1.322482e-48 | -8.615850e-47 |
| Msa0100290 | Msa0380400 | -0.820572 | 6.389373e-53 | -8.615850e-47 |
| Msa0100290 | Msa0386940 | 0.818352 | 2.049552e-52 | -8.615850e-47 |
| Msa0100290 | Msa0403480 | -0.808972 | 2.381509e-50 | -8.615850e-47 |
| Msa0100290 | Msa0476170 | -0.832709 | 8.095507e-56 | -8.615850e-47 |
| Msa0100290 | Msa0500470 | 0.806679 | 7.316486e-50 | -8.615850e-47 |
| Msa0100290 | Msa0519160 | 0.808469 | 3.050729e-50 | -8.615850e-47 |
| Msa0100290 | Msa0523430 | -0.806166 | 9.385902e-50 | -8.615850e-47 |
| Msa0100290 | Msa0523490 | -0.800346 | 1.504463e-48 | -8.615850e-47 |
| Msa0100290 | Msa0545050 | 0.809490 | 1.843756e-50 | -8.615850e-47 |
| Msa0100290 | Msa0576080 | -0.820169 | 7.906078e-53 | -8.615850e-47 |
| Msa0100290 | Msa0576120 | -0.850387 | 1.755450e-60 | -8.615850e-47 |
| Msa0100290 | Msa0581280 | 0.803354 | 3.628534e-49 | -8.615850e-47 |
| Msa0100290 | Msa0771950 | 0.822768 | 1.985610e-53 | -8.615850e-47 |
| Msa0100290 | Msa0772280 | 0.832366 | 9.848657e-56 | -8.615850e-47 |
| Msa0100290 | Msa0810440 | 0.811618 | 6.398985e-51 | -8.615850e-47 |
| Msa0100290 | Msa0823540 | 0.808083 | 3.686341e-50 | -8.615850e-47 |
| Msa0100290 | Msa0862620 | 0.801337 | 9.442551e-49 | -8.615850e-47 |
| Msa0100290 | Msa1085610 | -0.829300 | 5.561012e-55 | -8.615850e-47 |
| Msa0100290 | Msa1150780 | 0.801465 | 8.890370e-49 | -8.615850e-47 |
| Msa0100290 | Msa1158390 | 0.808618 | 2.834951e-50 | -8.615850e-47 |
| Msa0100290 | Msa1176170 | 0.812761 | 3.603164e-51 | -8.615850e-47 |
| Msa0100290 | Msa1183140 | 0.848835 | 4.759033e-60 | -8.615850e-47 |
| Msa0100290 | Msa1208450 | -0.816835 | 4.505910e-52 | -8.615850e-47 |
| Msa0100290 | Msa1236110 | -0.804536 | 2.060621e-49 | -8.615850e-47 |
| Msa0100290 | Msa1272010 | 0.808313 | 3.293098e-50 | -8.615850e-47 |
| Msa0100290 | Msa1277410 | 0.816753 | 4.700697e-52 | -8.615850e-47 |
| Msa0100290 | Msa1298690 | 0.814288 | 1.663214e-51 | -8.615850e-47 |
| Msa0100290 | Msa1307160 | 0.813036 | 3.136746e-51 | -8.615850e-47 |
| Msa0100290 | Msa1307180 | 0.816399 | 5.643044e-52 | -8.615850e-47 |
| Msa0100290 | Msa1309760 | 0.835508 | 1.611418e-56 | -8.615850e-47 |
| Msa0100290 | Msa1316360 | 0.818931 | 1.514915e-52 | -8.615850e-47 |
| Msa0100290 | Msa1330540 | -0.818081 | 2.360405e-52 | -8.615850e-47 |
| Msa0100290 | Msa1346840 | 0.818002 | 2.460014e-52 | -8.615850e-47 |
| Msa0100290 | Msa1359400 | 0.988760 | 2.680613e-175 | -8.615850e-47 |
| Msa0100290 | Msa1363820 | -0.804993 | 1.654657e-49 | -8.615850e-47 |
| Msa0100290 | Msa1368360 | 0.829325 | 5.482924e-55 | -8.615850e-47 |
| Msa0100290 | Msa1369920 | -0.819660 | 1.033750e-52 | -8.615850e-47 |
| Msa0100290 | Msa1375610 | -0.823403 | 1.411234e-53 | -8.615850e-47 |
| Msa0100290 | Msa1376550 | -0.832082 | 1.158067e-55 | -8.615850e-47 |
| Msa0100290 | Msa1385720 | 0.801280 | 9.698457e-49 | -8.615850e-47 |
| Msa0100290 | Msa1412130 | 0.812331 | 4.474147e-51 | -8.615850e-47 |
| Msa0100290 | Msa1434090 | 0.800902 | 1.158838e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0100290 | MtrunA17_Chr1g0149811 | 96.958 | 263 | 7 | 1 | 1 | 263 | 1 | 262 | 0.0 | 532 |
| Msa0100290 | MtrunA17_Chr3g0137111 | 48.729 | 236 | 97 | 9 | 23 | 248 | 4 | 225 | 1.15e-57 | 183 |
| Msa0100290 | MtrunA17_Chr2g0333741 | 35.563 | 284 | 125 | 13 | 1 | 263 | 1 | 247 | 1.62e-31 | 117 |
| Msa0100290 | MtrunA17_Chr4g0001081 | 37.553 | 237 | 96 | 10 | 46 | 263 | 21 | 224 | 6.47e-31 | 114 |
| Msa0100290 | MtrunA17_Chr5g0434121 | 34.975 | 203 | 86 | 6 | 31 | 211 | 2 | 180 | 9.35e-26 | 101 |
| Msa0100290 | MtrunA17_Chr8g0376021 | 40.690 | 145 | 59 | 4 | 37 | 181 | 15 | 132 | 8.23e-25 | 98.6 |
| Msa0100290 | MtrunA17_Chr1g0161901 | 38.095 | 147 | 70 | 3 | 35 | 181 | 43 | 168 | 1.84e-24 | 98.2 |
| Msa0100290 | MtrunA17_Chr3g0110091 | 54.545 | 88 | 22 | 2 | 93 | 180 | 85 | 154 | 5.35e-24 | 96.7 |
| Msa0100290 | MtrunA17_Chr1g0207691 | 37.594 | 133 | 59 | 3 | 53 | 182 | 21 | 132 | 9.96e-19 | 81.6 |
| Msa0100290 | MtrunA17_Chr4g0072571 | 61.538 | 52 | 20 | 0 | 91 | 142 | 42 | 93 | 3.22e-16 | 74.3 |
| Msa0100290 | MtrunA17_Chr3g0081131 | 30.645 | 186 | 97 | 6 | 28 | 198 | 20 | 188 | 6.17e-16 | 75.9 |
| Msa0100290 | MtrunA17_Chr3g0081141 | 41.176 | 102 | 50 | 3 | 85 | 185 | 89 | 181 | 1.75e-14 | 72.0 |
| Msa0100290 | MtrunA17_Chr3g0081121 | 33.333 | 186 | 98 | 7 | 28 | 198 | 20 | 194 | 1.80e-14 | 71.6 |
| Msa0100290 | MtrunA17_Chr5g0396031 | 38.793 | 116 | 56 | 4 | 82 | 195 | 34 | 136 | 1.40e-13 | 69.7 |
| Msa0100290 | MtrunA17_Chr4g0053691 | 41.111 | 90 | 22 | 2 | 93 | 182 | 66 | 124 | 3.07e-13 | 66.2 |
| Msa0100290 | MtrunA17_Chr7g0251581 | 78.788 | 33 | 7 | 0 | 94 | 126 | 39 | 71 | 6.92e-13 | 65.5 |
| Msa0100290 | MtrunA17_Chr7g0254221 | 70.270 | 37 | 11 | 0 | 94 | 130 | 33 | 69 | 9.47e-13 | 64.3 |
| Msa0100290 | MtrunA17_Chr3g0079671 | 40.000 | 95 | 41 | 4 | 92 | 182 | 96 | 178 | 1.22e-11 | 63.5 |
| Msa0100290 | MtrunA17_Chr7g0224221 | 32.184 | 174 | 102 | 8 | 27 | 198 | 86 | 245 | 1.84e-11 | 63.5 |
| Msa0100290 | MtrunA17_Chr2g0310101 | 35.238 | 105 | 53 | 2 | 92 | 195 | 57 | 147 | 3.29e-11 | 61.2 |
| Msa0100290 | MtrunA17_Chr7g0222671 | 33.333 | 117 | 67 | 5 | 83 | 196 | 55 | 163 | 4.93e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0100290 | AT5G10970.1 | 42.616 | 237 | 90 | 9 | 49 | 263 | 60 | 272 | 4.17e-44 | 150 |
| Msa0100290 | AT5G25160.1 | 49.419 | 172 | 66 | 7 | 51 | 222 | 18 | 168 | 2.91e-39 | 137 |
| Msa0100290 | AT1G80730.1 | 37.395 | 238 | 127 | 7 | 35 | 263 | 4 | 228 | 1.95e-32 | 119 |
| Msa0100290 | AT1G66140.1 | 49.515 | 103 | 35 | 3 | 91 | 183 | 80 | 175 | 5.80e-22 | 92.0 |
| Msa0100290 | AT1G24625.1 | 42.727 | 110 | 37 | 4 | 74 | 179 | 33 | 120 | 1.25e-16 | 76.6 |
| Msa0100290 | AT5G14010.1 | 42.697 | 89 | 39 | 3 | 94 | 178 | 36 | 116 | 3.86e-14 | 68.9 |
| Msa0100290 | AT5G57520.1 | 77.778 | 36 | 8 | 0 | 94 | 129 | 50 | 85 | 5.08e-14 | 68.2 |
| Msa0100290 | AT1G67030.1 | 38.938 | 113 | 55 | 3 | 70 | 180 | 13 | 113 | 3.39e-13 | 67.0 |
| Msa0100290 | AT3G58070.1 | 31.638 | 177 | 92 | 7 | 23 | 190 | 23 | 179 | 6.47e-12 | 64.3 |
| Msa0100290 | AT5G01860.1 | 56.250 | 48 | 18 | 1 | 80 | 127 | 54 | 98 | 7.43e-11 | 60.8 |
Find 32 sgRNAs with CRISPR-Local
Find 76 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCAAACTCAAGAATCTTTA+TGG | 0.122503 | 1_3:+6813291 | Msa0100290:CDS |
| ATGGCTTCTTTGCCTCTTTA+TGG | 0.168485 | 1_3:+6813151 | Msa0100290:CDS |
| CTTTGTTTATTATGCATAAT+AGG | 0.201649 | 1_3:-6813118 | None:intergenic |
| CCTTCTCATGTTTCATCTAA+TGG | 0.202335 | 1_3:+6813229 | Msa0100290:CDS |
| CATGTTTCATCTAATGGATT+TGG | 0.228057 | 1_3:+6813235 | Msa0100290:CDS |
| AATGGATTTGGAAACTCTTA+TGG | 0.229174 | 1_3:+6813247 | Msa0100290:CDS |
| ATAGCTTCAGCTTCTGCTTT+TGG | 0.233602 | 1_3:+6813091 | Msa0100290:CDS |
| TTGCCTCTTTATGGTGCTTT+TGG | 0.261823 | 1_3:+6813160 | Msa0100290:CDS |
| ATGAAACATGAGAAGGCTTA+TGG | 0.351379 | 1_3:-6813222 | None:intergenic |
| CTCATAACTTCTTTAGATGT+TGG | 0.385754 | 1_3:+6812899 | Msa0100290:CDS |
| TGCAAAGGTGTGCTTGGACT+TGG | 0.428789 | 1_3:-6812737 | None:intergenic |
| TTCTATAGCTCACAAGCATT+AGG | 0.451109 | 1_3:+6812998 | Msa0100290:CDS |
| TTTGGTGGTAATAAACCTCT+TGG | 0.453972 | 1_3:+6813178 | Msa0100290:CDS |
| AAAGGTGTGCTTGGACTTGG+AGG | 0.516654 | 1_3:-6812734 | None:intergenic |
| TGGAATAGCAAAACTAGGTA+TGG | 0.517898 | 1_3:+6813324 | Msa0100290:CDS |
| ATCTTTATGGATCAACAACC+TGG | 0.518646 | 1_3:+6813304 | Msa0100290:CDS |
| CAACCTGGAATAGCAAAACT+AGG | 0.529841 | 1_3:+6813319 | Msa0100290:CDS |
| CCACCAAAAGCACCATAAAG+AGG | 0.536698 | 1_3:-6813163 | None:intergenic |
| CATCAAGAGGAAGTGTTGGT+AGG | 0.548091 | 1_3:+6813371 | Msa0100290:CDS |
| AAGTGTTGGTAGGTTTGAAG+TGG | 0.552808 | 1_3:+6813381 | Msa0100290:CDS |
| GAAGAAACAACAATCTATTG+AGG | 0.558110 | 1_3:+6812775 | Msa0100290:CDS |
| ATTAATGGAAAGACTAAGCA+AGG | 0.563627 | 1_3:+6812682 | None:intergenic |
| TATGGACATCATCATCATCA+TGG | 0.564611 | 1_3:+6813265 | Msa0100290:CDS |
| TCTTGAGAAGAGAAGATGCA+TGG | 0.579539 | 1_3:-6812707 | None:intergenic |
| GGTAGAAGAAGATATCACTA+AGG | 0.583712 | 1_3:+6812796 | Msa0100290:CDS |
| ACATCATCAAGAGGAAGTGT+TGG | 0.585725 | 1_3:+6813367 | Msa0100290:CDS |
| TATAGCTCACAAGCATTAGG+TGG | 0.606344 | 1_3:+6813001 | Msa0100290:CDS |
| AGAACAACAACATCATCAAG+AGG | 0.611847 | 1_3:+6813358 | Msa0100290:CDS |
| ATATTCATAATCATAGCTTG+AGG | 0.612882 | 1_3:-6813465 | None:intergenic |
| TAAACAAAGTTATGCAAACA+TGG | 0.616969 | 1_3:+6813132 | Msa0100290:CDS |
| CCATTAGATGAAACATGAGA+AGG | 0.626125 | 1_3:-6813229 | None:intergenic |
| GAGTGTGCTTGAATTCCAAG+AGG | 0.647089 | 1_3:-6813193 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTGTTTATTATGCATAAT+AGG | - | chr1_3:6813121-6813140 | None:intergenic | 20.0% |
| !!! | CTTTGTTTATTATGCATAAT+AGG | - | chr1_3:6813121-6813140 | None:intergenic | 20.0% |
| !!! | TTTTCATGTTGATTTTGCAA+AGG | - | chr1_3:6812755-6812774 | None:intergenic | 25.0% |
| ! | TAAACAAAGTTATGCAAACA+TGG | + | chr1_3:6813132-6813151 | Msa0100290:CDS | 25.0% |
| !!! | TTTTCATGTTGATTTTGCAA+AGG | - | chr1_3:6812755-6812774 | None:intergenic | 25.0% |
| ! | TAAACAAAGTTATGCAAACA+TGG | + | chr1_3:6813132-6813151 | Msa0100290:CDS | 25.0% |
| GAAGAAACAACAATCTATTG+AGG | + | chr1_3:6812775-6812794 | Msa0100290:CDS | 30.0% | |
| CTCATAACTTCTTTAGATGT+TGG | + | chr1_3:6812899-6812918 | Msa0100290:CDS | 30.0% | |
| !! | CATGTTTCATCTAATGGATT+TGG | + | chr1_3:6813235-6813254 | Msa0100290:CDS | 30.0% |
| ! | AATGGATTTGGAAACTCTTA+TGG | + | chr1_3:6813247-6813266 | Msa0100290:CDS | 30.0% |
| GTCAAACTCAAGAATCTTTA+TGG | + | chr1_3:6813291-6813310 | Msa0100290:CDS | 30.0% | |
| GAAGAAACAACAATCTATTG+AGG | + | chr1_3:6812775-6812794 | Msa0100290:CDS | 30.0% | |
| CTCATAACTTCTTTAGATGT+TGG | + | chr1_3:6812899-6812918 | Msa0100290:CDS | 30.0% | |
| !! | CATGTTTCATCTAATGGATT+TGG | + | chr1_3:6813235-6813254 | Msa0100290:CDS | 30.0% |
| ! | AATGGATTTGGAAACTCTTA+TGG | + | chr1_3:6813247-6813266 | Msa0100290:CDS | 30.0% |
| GTCAAACTCAAGAATCTTTA+TGG | + | chr1_3:6813291-6813310 | Msa0100290:CDS | 30.0% | |
| GGTAGAAGAAGATATCACTA+AGG | + | chr1_3:6812796-6812815 | Msa0100290:CDS | 35.0% | |
| TTCTATAGCTCACAAGCATT+AGG | + | chr1_3:6812998-6813017 | Msa0100290:CDS | 35.0% | |
| ! | TCTCTCTTTTGTGAGCATTT+TGG | - | chr1_3:6813030-6813049 | None:intergenic | 35.0% |
| GAGAGATCAATAGCAAAAAG+AGG | + | chr1_3:6813046-6813065 | Msa0100290:CDS | 35.0% | |
| GCAAAAAGAGGACAAAGATT+TGG | + | chr1_3:6813058-6813077 | Msa0100290:CDS | 35.0% | |
| ! | TTTGGTGGTAATAAACCTCT+TGG | + | chr1_3:6813178-6813197 | Msa0100290:CDS | 35.0% |
| ATGAAACATGAGAAGGCTTA+TGG | - | chr1_3:6813225-6813244 | None:intergenic | 35.0% | |
| CCATTAGATGAAACATGAGA+AGG | - | chr1_3:6813232-6813251 | None:intergenic | 35.0% | |
| CCTTCTCATGTTTCATCTAA+TGG | + | chr1_3:6813229-6813248 | Msa0100290:CDS | 35.0% | |
| TATGGACATCATCATCATCA+TGG | + | chr1_3:6813265-6813284 | Msa0100290:CDS | 35.0% | |
| ATCTTTATGGATCAACAACC+TGG | + | chr1_3:6813304-6813323 | Msa0100290:CDS | 35.0% | |
| !!! | ATACCTAGTTTTGCTATTCC+AGG | - | chr1_3:6813325-6813344 | None:intergenic | 35.0% |
| TGGAATAGCAAAACTAGGTA+TGG | + | chr1_3:6813324-6813343 | Msa0100290:CDS | 35.0% | |
| AGAACAACAACATCATCAAG+AGG | + | chr1_3:6813358-6813377 | Msa0100290:CDS | 35.0% | |
| GGTAGAAGAAGATATCACTA+AGG | + | chr1_3:6812796-6812815 | Msa0100290:CDS | 35.0% | |
| TTCTATAGCTCACAAGCATT+AGG | + | chr1_3:6812998-6813017 | Msa0100290:CDS | 35.0% | |
| ! | TCTCTCTTTTGTGAGCATTT+TGG | - | chr1_3:6813030-6813049 | None:intergenic | 35.0% |
| GAGAGATCAATAGCAAAAAG+AGG | + | chr1_3:6813046-6813065 | Msa0100290:CDS | 35.0% | |
| GCAAAAAGAGGACAAAGATT+TGG | + | chr1_3:6813058-6813077 | Msa0100290:CDS | 35.0% | |
| ! | TTTGGTGGTAATAAACCTCT+TGG | + | chr1_3:6813178-6813197 | Msa0100290:CDS | 35.0% |
| ATGAAACATGAGAAGGCTTA+TGG | - | chr1_3:6813225-6813244 | None:intergenic | 35.0% | |
| CCATTAGATGAAACATGAGA+AGG | - | chr1_3:6813232-6813251 | None:intergenic | 35.0% | |
| CCTTCTCATGTTTCATCTAA+TGG | + | chr1_3:6813229-6813248 | Msa0100290:CDS | 35.0% | |
| TATGGACATCATCATCATCA+TGG | + | chr1_3:6813265-6813284 | Msa0100290:CDS | 35.0% | |
| ATCTTTATGGATCAACAACC+TGG | + | chr1_3:6813304-6813323 | Msa0100290:CDS | 35.0% | |
| !!! | ATACCTAGTTTTGCTATTCC+AGG | - | chr1_3:6813325-6813344 | None:intergenic | 35.0% |
| TGGAATAGCAAAACTAGGTA+TGG | + | chr1_3:6813324-6813343 | Msa0100290:CDS | 35.0% | |
| AGAACAACAACATCATCAAG+AGG | + | chr1_3:6813358-6813377 | Msa0100290:CDS | 35.0% | |
| TCTTGAGAAGAGAAGATGCA+TGG | - | chr1_3:6812710-6812729 | None:intergenic | 40.0% | |
| !! | TGATTTTGCAAAGGTGTGCT+TGG | - | chr1_3:6812746-6812765 | None:intergenic | 40.0% |
| TATAGCTCACAAGCATTAGG+TGG | + | chr1_3:6813001-6813020 | Msa0100290:CDS | 40.0% | |
| ! | ATAGCTTCAGCTTCTGCTTT+TGG | + | chr1_3:6813091-6813110 | Msa0100290:CDS | 40.0% |
| ATGGCTTCTTTGCCTCTTTA+TGG | + | chr1_3:6813151-6813170 | Msa0100290:CDS | 40.0% | |
| ! | TTGCCTCTTTATGGTGCTTT+TGG | + | chr1_3:6813160-6813179 | Msa0100290:CDS | 40.0% |
| GACATCATCATCATCATGGT+TGG | + | chr1_3:6813269-6813288 | Msa0100290:CDS | 40.0% | |
| CAACCTGGAATAGCAAAACT+AGG | + | chr1_3:6813319-6813338 | Msa0100290:CDS | 40.0% | |
| ! | ACATCATCAAGAGGAAGTGT+TGG | + | chr1_3:6813367-6813386 | Msa0100290:CDS | 40.0% |
| !! | AAGTGTTGGTAGGTTTGAAG+TGG | + | chr1_3:6813381-6813400 | Msa0100290:CDS | 40.0% |
| TCTTGAGAAGAGAAGATGCA+TGG | - | chr1_3:6812710-6812729 | None:intergenic | 40.0% | |
| !! | TGATTTTGCAAAGGTGTGCT+TGG | - | chr1_3:6812746-6812765 | None:intergenic | 40.0% |
| TATAGCTCACAAGCATTAGG+TGG | + | chr1_3:6813001-6813020 | Msa0100290:CDS | 40.0% | |
| ! | ATAGCTTCAGCTTCTGCTTT+TGG | + | chr1_3:6813091-6813110 | Msa0100290:CDS | 40.0% |
| ATGGCTTCTTTGCCTCTTTA+TGG | + | chr1_3:6813151-6813170 | Msa0100290:CDS | 40.0% | |
| ! | TTGCCTCTTTATGGTGCTTT+TGG | + | chr1_3:6813160-6813179 | Msa0100290:CDS | 40.0% |
| GACATCATCATCATCATGGT+TGG | + | chr1_3:6813269-6813288 | Msa0100290:CDS | 40.0% | |
| CAACCTGGAATAGCAAAACT+AGG | + | chr1_3:6813319-6813338 | Msa0100290:CDS | 40.0% | |
| ! | ACATCATCAAGAGGAAGTGT+TGG | + | chr1_3:6813367-6813386 | Msa0100290:CDS | 40.0% |
| !! | AAGTGTTGGTAGGTTTGAAG+TGG | + | chr1_3:6813381-6813400 | Msa0100290:CDS | 40.0% |
| !! | CCACCAAAAGCACCATAAAG+AGG | - | chr1_3:6813166-6813185 | None:intergenic | 45.0% |
| ! | CCTCTTTATGGTGCTTTTGG+TGG | + | chr1_3:6813163-6813182 | Msa0100290:CDS | 45.0% |
| GAGTGTGCTTGAATTCCAAG+AGG | - | chr1_3:6813196-6813215 | None:intergenic | 45.0% | |
| !! | CATCAAGAGGAAGTGTTGGT+AGG | + | chr1_3:6813371-6813390 | Msa0100290:CDS | 45.0% |
| !! | CCACCAAAAGCACCATAAAG+AGG | - | chr1_3:6813166-6813185 | None:intergenic | 45.0% |
| ! | CCTCTTTATGGTGCTTTTGG+TGG | + | chr1_3:6813163-6813182 | Msa0100290:CDS | 45.0% |
| GAGTGTGCTTGAATTCCAAG+AGG | - | chr1_3:6813196-6813215 | None:intergenic | 45.0% | |
| !! | CATCAAGAGGAAGTGTTGGT+AGG | + | chr1_3:6813371-6813390 | Msa0100290:CDS | 45.0% |
| ! | AAAGGTGTGCTTGGACTTGG+AGG | - | chr1_3:6812737-6812756 | None:intergenic | 50.0% |
| ! | TGCAAAGGTGTGCTTGGACT+TGG | - | chr1_3:6812740-6812759 | None:intergenic | 50.0% |
| ! | AAAGGTGTGCTTGGACTTGG+AGG | - | chr1_3:6812737-6812756 | None:intergenic | 50.0% |
| ! | TGCAAAGGTGTGCTTGGACT+TGG | - | chr1_3:6812740-6812759 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 6812686 | 6813477 | 6812686 | ID=Msa0100290;Name=Msa0100290 |
| chr1_3 | mRNA | 6812686 | 6813477 | 6812686 | ID=Msa0100290-mRNA-1;Parent=Msa0100290;Name=Msa0100290-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|263 |
| chr1_3 | exon | 6812686 | 6813477 | 6812686 | ID=Msa0100290-mRNA-1:exon:2585;Parent=Msa0100290-mRNA-1 |
| chr1_3 | CDS | 6812686 | 6813477 | 6812686 | ID=Msa0100290-mRNA-1:cds;Parent=Msa0100290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
