AlfalfaGEDB | Msa0423790

M. sativa cultivar zhongmu-4 / Msa0423790

KEGG: K05933
GO: GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009058 GO:0009692 GO:0009693 GO:0009815 GO:0009987 GO:0010817 GO:0016491 GO:0016638 GO:0016641 GO:0042445 GO:0042446 GO:0043449 GO:0043450 GO:0044237 GO:0044249 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1900673 GO:1900674 GO:1901576
PFAM: PF14226.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0423790	XP_013461308.1	99.026	308	3	0	1	308	1	308	0.0	630

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0423790	sp\|Q0WPW4\|ACCO5_ARATH	72.524	313	75	4	1	308	1	307	1.54e-163	460

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0423790	A0A072V1X2	99.026	308	3	0	1	308	1	308	0.0	630

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004590	Msa0423790	0.802150	6.430964e-49	-8.615850e-47
Msa0057860	Msa0423790	0.801522	8.655487e-49	-8.615850e-47
Msa0078160	Msa0423790	-0.806705	7.225437e-50	-8.615850e-47
Msa0102920	Msa0423790	0.819536	1.103324e-52	-8.615850e-47
Msa0147680	Msa0423790	0.810322	1.221251e-50	-8.615850e-47
Msa0166180	Msa0423790	0.801747	7.782852e-49	-8.615850e-47
Msa0211460	Msa0423790	0.804330	2.275340e-49	-8.615850e-47
Msa0238140	Msa0423790	0.800877	1.172460e-48	-8.615850e-47
Msa0268280	Msa0423790	-0.828075	1.099614e-54	-8.615850e-47
Msa0268290	Msa0423790	-0.819840	9.400867e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0423790	MtrunA17_Chr3g0125201	99.026	308	3	0	1	308	1	308	0.0	630
Msa0423790	MtrunA17_Chr2g0289341	50.489	307	138	4	4	305	5	302	3.09e-106	312
Msa0423790	MtrunA17_Chr5g0439011	49.196	311	146	3	1	306	3	306	3.30e-106	312
Msa0423790	MtrunA17_Chr3g0121141	50.325	308	137	4	4	306	5	301	4.57e-106	311
Msa0423790	MtrunA17_Chr6g0488511	47.003	317	137	6	1	306	1	297	2.64e-90	271
Msa0423790	MtrunA17_Chr3g0128001	40.803	299	151	9	3	290	38	321	5.56e-69	218
Msa0423790	MtrunA17_Chr8g0345831	41.216	296	150	9	2	286	41	323	1.74e-67	214
Msa0423790	MtrunA17_Chr5g0437181	37.415	294	168	4	3	286	49	336	4.35e-65	208
Msa0423790	MtrunA17_Chr4g0075471	66.906	139	45	1	153	291	22	159	5.80e-65	201
Msa0423790	MtrunA17_Chr4g0006371	38.796	299	162	7	1	286	60	350	9.69e-65	208

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0423790	AT1G77330.1	72.524	313	75	4	1	308	1	307	1.57e-164	460
Msa0423790	AT1G62380.1	50.161	311	138	4	1	306	5	303	4.30e-109	320
Msa0423790	AT1G12010.1	50.325	308	136	4	4	306	8	303	4.22e-105	310
Msa0423790	AT1G05010.1	49.363	314	145	5	2	308	3	309	5.61e-102	302
Msa0423790	AT2G19590.1	44.762	315	148	6	1	308	9	304	1.15e-86	262
Msa0423790	AT2G19590.2	44.523	283	131	6	33	308	26	289	3.78e-71	222
Msa0423790	AT5G24530.1	40.476	294	152	6	4	286	39	320	1.65e-70	222
Msa0423790	AT4G10490.1	35.831	307	171	9	2	295	41	334	1.33e-61	199
Msa0423790	AT5G05600.1	36.395	294	171	4	3	286	62	349	3.05e-61	199
Msa0423790	AT4G10500.1	36.486	296	166	8	2	285	43	328	5.01e-61	198

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Find 116 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGGAGAATGTGGACT+GGG	0.618920	3_2:+73788674	Msa0423790:CDS
AAAGCTCAATGGTGAAGAAA+GGG	0.519903	3_2:+73788303	Msa0423790:CDS
AAATGCTCAAAGATGGGGAA+TGG	0.549631	3_2:+73789483	Msa0423790:CDS
AAGGCTCTGAATGACGGAGA+AGG	0.567122	3_2:+73789323	Msa0423790:CDS
AAGTCCTGCACCACAATTGG+CGG	0.531890	3_2:+73789673	Msa0423790:CDS
AATGCCATTGTCATCAACAC+TGG	0.623265	3_2:+73789527	Msa0423790:CDS
ACAAGTTCTGGACGAGGGCA+GGG	0.567547	3_2:-73789386	None:intergenic
ACCAAAAGGATATATCAAGA+AGG	0.597384	3_2:+73789304	Msa0423790:CDS
ACTTCTTGAAAGGGTGAAGA+AGG	0.445400	3_2:+73788554	Msa0423790:CDS
ACTTTGGCGCAGATTGCTAA+TGG	0.403970	3_2:+73788331	Msa0423790:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACATAAACGATTTAAGTACC+TGG	-	chr3_2:73788378-73788397	None:intergenic	30.0%
AAAGAAGAGCAGTGAAAAAT+TGG	+	chr3_2:73788659-73788678	Msa0423790:CDS	30.0%
ACCAAAAGGATATATCAAGA+AGG	+	chr3_2:73789304-73789323	Msa0423790:CDS	30.0%
GTTGCCATTCTGTTAATAAT+GGG	+	chr3_2:73789936-73789955	Msa0423790:three_prime_UTR	30.0%
TGCTTTATCTTCAACTGTAA+TGG	+	chr3_2:73790003-73790022	Msa0423790:three_prime_UTR	30.0%
TTTATCTTCAACTGTAATGG+TGG	+	chr3_2:73790006-73790025	Msa0423790:three_prime_UTR	30.0%
TTATCTTCAACTGTAATGGT+GGG	+	chr3_2:73790007-73790026	Msa0423790:three_prime_UTR	30.0%
GAGATTGTATGCATAAATCT+GGG	+	chr3_2:73790029-73790048	Msa0423790:three_prime_UTR	30.0%
ACATAAACGATTTAAGTACC+TGG	-	chr3_2:73788378-73788397	None:intergenic	30.0%
AAAGAAGAGCAGTGAAAAAT+TGG	+	chr3_2:73788659-73788678	Msa0423790:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	73788147	73790106	73788147	ID=Msa0423790;Name=Msa0423790
chr3_2	mRNA	73788147	73790106	73788147	ID=Msa0423790-mRNA-1;Parent=Msa0423790;Name=Msa0423790-mRNA-1;_AED=0.02;_eAED=0.02;_QI=130\|1\|1\|1\|1\|1\|3\|286\|308
chr3_2	exon	73788147	73788378	73788147	ID=Msa0423790-mRNA-1:exon:18515;Parent=Msa0423790-mRNA-1
chr3_2	exon	73788528	73788754	73788528	ID=Msa0423790-mRNA-1:exon:18516;Parent=Msa0423790-mRNA-1
chr3_2	exon	73789223	73790106	73789223	ID=Msa0423790-mRNA-1:exon:18517;Parent=Msa0423790-mRNA-1
chr3_2	five_prime_UTR	73788147	73788276	73788147	ID=Msa0423790-mRNA-1:five_prime_utr;Parent=Msa0423790-mRNA-1
chr3_2	CDS	73788277	73788378	73788277	ID=Msa0423790-mRNA-1:cds;Parent=Msa0423790-mRNA-1
chr3_2	CDS	73788528	73788754	73788528	ID=Msa0423790-mRNA-1:cds;Parent=Msa0423790-mRNA-1
chr3_2	CDS	73789223	73789820	73789223	ID=Msa0423790-mRNA-1:cds;Parent=Msa0423790-mRNA-1
chr3_2	three_prime_UTR	73789821	73790106	73789821	ID=Msa0423790-mRNA-1:three_prime_utr;Parent=Msa0423790-mRNA-1

Gene Sequence

>Msa0423790

ATGGCAGTCCCAGTCATTGATTTCTCAAAGCTCAATGGTGAAGAAAGGGCCAAAACTTTGGCGCAGATTGCTAATGGCTGTGAAGAATGGGGATTCTTCCAGTTGATCAATCACGGCATTTCGGAGGAACTTCTTGAAAGGGTGAAGAAGGTTTCATCTGAGTTCTATAAGCTGGAAAGAGAGGAGAATTTCAAAAACTCCAAAACAGTGAAGCTTCTGAATGATATAGCTGAAAAGAAGAGCAGTGAAAAATTGGAGAATGTGGACTGGGAGGATGTTATCACTCTTTTGGATGATAACGAATGGCCAGAAAATACACCAAGTTTCAGGGAAACCATGTCAGAATATCGGTCTGAGTTAAAGAAACTGGCAGTGAATCTCACAGAAGTGATGGATGAGAATCTGGGCTTACCAAAAGGATATATCAAGAAGGCTCTGAATGACGGAGAAGGAGACAATGCTTTCTTTGGCACCAAGGTCAGCCACTACCCACCCTGCCCTCGTCCAGAACTTGTGAATGGTCTCCGAGCTCATACTGATGCAGGAGGTGTCATCCTACTATTCCAAGATGACAAGGTAGGTGGCCTTCAAATGCTCAAAGATGGGGAATGGCTTGATGTCCAACCTTTGCCAAATGCCATTGTCATCAACACTGGTGATCAGATTGAAGTCCTGAGCAATGGCAGATACAAGAGTTGTTGGCACAGGGTTCTGACCGCTACAGAGGGTACCAGGAGATCAATTGCATCCTTCTATAACCCACCCCTGAAGGCCACTATAAGTCCTGCACCACAATTGGCGGAAAAAGATAACCAACAAGTCGATGACACTTATCCTAAGTTCGTTTTCGGCGACTACATGTCTGTCTATGCTGAGCAGAAGTTCCTCCCCAAGGAACCAAGGTTTAGAGCTGTTAAAGCCATATGA

Protein sequence

>Msa0423790

MAVPVIDFSKLNGEERAKTLAQIANGCEEWGFFQLINHGISEELLERVKKVSSEFYKLEREENFKNSKTVKLLNDIAEKKSSEKLENVDWEDVITLLDDNEWPENTPSFRETMSEYRSELKKLAVNLTEVMDENLGLPKGYIKKALNDGEGDNAFFGTKVSHYPPCPRPELVNGLRAHTDAGGVILLFQDDKVGGLQMLKDGEWLDVQPLPNAIVINTGDQIEVLSNGRYKSCWHRVLTATEGTRRSIASFYNPPLKATISPAPQLAEKDNQQVDDTYPKFVFGDYMSVYAEQKFLPKEPRFRAVKAI*