AlfalfaGEDB | Msa1365980

M. sativa cultivar zhongmu-4 / Msa1365980

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1365980	AET02413.1	80.925	173	11	2	1	173	91	241	2.23e-89	271

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1365980	G7LHI8	80.925	173	11	2	1	173	91	241	1.07e-89	271

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002110	Msa1365980	0.815080	1.110187e-51	-8.615850e-47
Msa0002690	Msa1365980	0.807313	5.372257e-50	-8.615850e-47
Msa0004180	Msa1365980	0.836654	8.242395e-57	-8.615850e-47
Msa0011100	Msa1365980	0.804386	2.214279e-49	-8.615850e-47
Msa0011440	Msa1365980	0.815144	1.074320e-51	-8.615850e-47
Msa0013270	Msa1365980	-0.817337	3.474585e-52	-8.615850e-47
Msa0016380	Msa1365980	0.826068	3.323057e-54	-8.615850e-47
Msa0017300	Msa1365980	0.831602	1.521194e-55	-8.615850e-47
Msa0017710	Msa1365980	-0.822801	1.950507e-53	-8.615850e-47
Msa0018110	Msa1365980	0.800432	1.445348e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 77 sgRNAs with CRISPR-Local

Find 81 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGTTCATGACCCGT+AGG	0.653857	tig0018442:-53235	Msa1365980:CDS
AACGCGTAAGAACCTGCCCT+TGG	0.497667	tig0018442:+52949	None:intergenic
AAGAAACAATGACGGTATCT+GGG	0.492143	tig0018442:+53265	None:intergenic
AAGCGTTATCCGGAATGATT+GGG	0.511219	tig0018442:+53340	None:intergenic
AAGGAGGAATCCGCCCAAGG+AGG	0.622334	tig0018442:+53025	None:intergenic
AAGTTCGCCGTCAAATCCCA+GGG	0.564420	tig0018442:+53389	None:intergenic
ACGCGTAAGAACCTGCCCTT+GGG	0.530469	tig0018442:+52950	None:intergenic
ACGGGAAGTGGTGTTTCCAG+TGG	0.620953	tig0018442:+52913	None:intergenic
ACTCCTACGGGAGGCAGCAG+TGG	0.491996	tig0018442:+53155	None:intergenic
AGAAACAATGACGGTATCTG+GGG	0.658343	tig0018442:+53266	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAACAATGACGGTATCT+GGG	+	tig0018442:52999-53018	None:intergenic	35.0%
AAGCGTTATCCGGAATGATT+GGG	+	tig0018442:52924-52943	None:intergenic	40.0%
AGAAACAATGACGGTATCTG+GGG	+	tig0018442:52998-53017	None:intergenic	40.0%
GAAGAAACAATGACGGTATC+TGG	+	tig0018442:53000-53019	None:intergenic	40.0%
TCCTGGAGAAGAAACAATGA+CGG	+	tig0018442:53007-53026	None:intergenic	40.0%
AAAAGAAGTTCATGACCCGT+AGG	-	tig0018442:53026-53045	Msa1365980:CDS	40.0%
TTTACACATGCAAGTCGAAC+GGG	+	tig0018442:53369-53388	None:intergenic	40.0%
CTTTACACATGCAAGTCGAA+CGG	+	tig0018442:53370-53389	None:intergenic	40.0%
CAAGCGTTATCCGGAATGAT+TGG	+	tig0018442:52925-52944	None:intergenic	45.0%
GGTATCTGGGGAATAAGCAT+CGG	+	tig0018442:52986-53005	None:intergenic	45.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0018442	gene	52874	53409	52874	ID=Msa1365980;Name=Msa1365980
tig0018442	mRNA	52874	53409	52874	ID=Msa1365980-mRNA-1;Parent=Msa1365980;Name=Msa1365980-mRNA-1;_AED=0.42;_eAED=0.44;_QI=0\|0\|0\|1\|0\|0\|3\|0\|173
tig0018442	exon	53272	53409	53272	ID=Msa1365980-mRNA-1:exon:14905;Parent=Msa1365980-mRNA-1
tig0018442	exon	53163	53258	53163	ID=Msa1365980-mRNA-1:exon:14904;Parent=Msa1365980-mRNA-1
tig0018442	exon	52874	53158	52874	ID=Msa1365980-mRNA-1:exon:14903;Parent=Msa1365980-mRNA-1
tig0018442	CDS	53272	53409	53272	ID=Msa1365980-mRNA-1:cds;Parent=Msa1365980-mRNA-1
tig0018442	CDS	53163	53258	53163	ID=Msa1365980-mRNA-1:cds;Parent=Msa1365980-mRNA-1
tig0018442	CDS	52874	53158	52874	ID=Msa1365980-mRNA-1:cds;Parent=Msa1365980-mRNA-1

Gene Sequence

>Msa1365980

CTGGGATTTGACGGCGAACTTAAAAAGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTACCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCATTGAAAAGAAGTTCATGACCCGTAGGCCTTTTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGAGTCTGGGCCTTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCACCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTTGGGCGGATTCCTCCTTTCGCTCCTCAGCTTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTTCTTACGCGTTACTCACCCGTCCGCCACTGGAAACACCACTTCCCGTTCGACTTGCATGTGTAAAGCATGCCGCCAGCGTTCATCC

Protein sequence

>Msa1365980

LGFDGELKKPPTDALRPIIPDNACILCLTAAAGTELADAYSPDTVIEKKFMTRRPFTSTRHCSVRLSPIAENSPLLPPESGPCLSPSVADHPLGPATDHRLGKLLPHQLANQTRAPPWADSSFRSSAYGVLAAVSSCCSPPKGRFLRVTHPSATGNTTSRSTCMCKACRQRSS