AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0911220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0911220 MtrunA17_Chr4g0016151 98.780 82 1 0 278 359 1 82 3.97e-53 170
Msa0911220 MtrunA17_CPg0492351 98.780 82 1 0 278 359 1 82 3.97e-53 170
Msa0911220 MtrunA17_Chr7g0229411 97.561 82 2 0 278 359 1 82 1.66e-52 168
Msa0911220 MtrunA17_Chr4g0000631 97.561 82 2 0 278 359 1 82 1.68e-52 168
Msa0911220 MtrunA17_Chr5g0435911 96.341 82 3 0 278 359 1 82 6.19e-51 164
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 146 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCACGCCTCCGTTACCTTT+TGG 0.196515 6_2:+17445148 Msa0911220:CDS
CAGCTCACGTACCGCTTTAA+TGG 0.245260 6_2:+17444853 Msa0911220:CDS
CAGAGAACCCATCGCTGTTT+TGG 0.269609 6_2:+17444586 Msa0911220:CDS
GGCTGTGATACCGGAGGCTC+TGG 0.279102 6_2:+17444607 Msa0911220:CDS
TCTCAGGTAGACAGTTTCTA+TGG 0.287253 6_2:-17445183 None:intergenic
TCTAACGCCCACACCGGATA+TGG 0.325084 6_2:+17444802 Msa0911220:CDS
TCCTCGGGCCAGACGGAGAT+TGG 0.349112 6_2:-17445119 None:intergenic
TCCCGTCGATGTGAGCTCTT+GGG 0.355274 6_2:+17444947 Msa0911220:CDS
CACCAACTTCCTTAACCTTC+CGG 0.362818 6_2:+17445573 Msa0911220:CDS
TTCACCGGGGCTTCGGTCGC+CGG 0.371598 6_2:+17445533 Msa0911220:CDS
CAAAGTCGTAAGACCATGTA+TGG 0.380055 6_2:-17445616 None:intergenic
AAAGTTACTCTAGGGATAAC+AGG 0.383241 6_2:-17444979 None:intergenic
CATTAAAGCGGTACGTGAGC+TGG 0.384796 6_2:-17444852 None:intergenic
TTCCCGTCGATGTGAGCTCT+TGG 0.386490 6_2:+17444946 Msa0911220:CDS
TCCTTCCGAATTATGTAATC+CGG 0.391079 6_2:-17443258 None:intergenic
TCATTCCGGATTACATAATT+CGG 0.393951 6_2:+17443253 Msa0911220:CDS
AGCTCACGTACCGCTTTAAT+GGG 0.395506 6_2:+17444854 Msa0911220:CDS
GCCGCCGTTCACCGGGGCTT+CGG 0.397671 6_2:+17445526 Msa0911220:CDS
GATGGAAGGGCAGAGGCCTT+TGG 0.402998 6_2:-17444299 None:intergenic
AATAGGAGAGCACTCATCTT+GGG 0.408942 6_2:+17444639 Msa0911220:CDS
TGCCCAGTGCCGGAAGGTTA+AGG 0.409134 6_2:-17445582 None:intergenic
CTCGGTAATGGTGGCCTCTC+GGG 0.410401 6_2:-17443503 None:intergenic
CCCTTCTGCCTTTGCACTCG+AGG 0.411231 6_2:+17445095 Msa0911220:CDS
CTCACATCGACGGGAAGGTT+TGG 0.420533 6_2:-17444939 None:intergenic
CTTCCTTAACCTTCCGGCAC+TGG 0.422146 6_2:+17445579 Msa0911220:CDS
TGTAGTATGTTCCAAGGGTT+GGG 0.424624 6_2:-17444884 None:intergenic
TAGTTACGGCCGCCGTTCAC+CGG 0.432611 6_2:+17445518 Msa0911220:CDS
ATTATGTTTGCTCTCGGTAA+TGG 0.434637 6_2:-17443515 None:intergenic
GGCTGACGCCTGCCCAGTGC+CGG 0.435469 6_2:-17445592 None:intergenic
TTAACCTTCCGGCACTGGGC+AGG 0.436659 6_2:+17445584 Msa0911220:CDS
AGTTACGGCCGCCGTTCACC+GGG 0.437053 6_2:+17445519 Msa0911220:CDS
AGTTGAACAATCAAAATAGA+TGG 0.442588 6_2:+17444377 Msa0911220:CDS
TCTCGGTAATGGTGGCCTCT+CGG 0.446931 6_2:-17443504 None:intergenic
CTTCCATCCCTAGCTATTCA+AGG 0.450796 6_2:+17444314 Msa0911220:CDS
TCATAGGTTCAAATCCTACT+TGG 0.452763 6_2:+17443219 Msa0911220:CDS
CTGTAGTATGTTCCAAGGGT+TGG 0.452990 6_2:-17444885 None:intergenic
TCGCCGGCTTCCCTGTCATC+AGG 0.453580 6_2:+17445549 Msa0911220:CDS
GAGACAGTTCGGTCCATATC+CGG 0.455659 6_2:-17444815 None:intergenic
ACAGACCAAGGGACAGTCTC+AGG 0.456050 6_2:-17445199 None:intergenic
CAGAACGTCGTGAGACAGTT+CGG 0.457061 6_2:-17444826 None:intergenic
GAAGCCGGCGACCGAAGCCC+CGG 0.461073 6_2:-17445537 None:intergenic
CCTTCTGCCTTTGCACTCGA+GGG 0.461384 6_2:+17445096 Msa0911220:CDS
GACTGTCCCTTGGTCTGTAC+TGG 0.464231 6_2:+17445204 Msa0911220:CDS
CCCCAAGAGCTCACATCGAC+GGG 0.472021 6_2:-17444948 None:intergenic
CACGAAAGGCGTAACGATCT+AGG 0.473575 6_2:-17445447 None:intergenic
GTCATTATTATGTTTGCTCT+CGG 0.474290 6_2:-17443521 None:intergenic
TACATGGTCTTACGACTTTG+CGG 0.476001 6_2:+17445619 Msa0911220:CDS
TCCGACTTCCCCAGAGCCTC+CGG 0.480691 6_2:-17444617 None:intergenic
CTCGAGGGCCAATCTCCGTC+TGG 0.480699 6_2:+17445111 Msa0911220:CDS
CCTTAGGACTGTTATAGTTA+CGG 0.483481 6_2:+17445504 Msa0911220:CDS
TGCCGGAAGGTTAAGGAAGT+TGG 0.485164 6_2:-17445575 None:intergenic
ACAAGGAATTTCGCTACCTT+AGG 0.486715 6_2:+17445488 Msa0911220:CDS
GAATAGGAGAGCACTCATCT+TGG 0.487596 6_2:+17444638 Msa0911220:CDS
GGCTCTGGGGAAGTCGGAAT+AGG 0.491163 6_2:+17444622 Msa0911220:CDS
TCCCTAGCTATTCAAGGGAT+GGG 0.493688 6_2:+17444320 Msa0911220:CDS
GAAGTTGGTGACCTGATGAC+AGG 0.495416 6_2:-17445560 None:intergenic
AGGTAGCGAAATTCCTTGTC+GGG 0.495901 6_2:-17445484 None:intergenic
ATTGCCTGATCGAATTGATC+AGG 0.499380 6_2:+17444402 Msa0911220:CDS
GCTGTTAACCGATTGGTCAT+AGG 0.503675 6_2:+17443203 Msa0911220:CDS
TTCCTTAACCTTCCGGCACT+GGG 0.504342 6_2:+17445580 Msa0911220:CDS
GCGACCGAAGCCCCGGTGAA+CGG 0.505900 6_2:-17445530 None:intergenic
GATGTCGGCTCTTCGCCACC+TGG 0.508239 6_2:-17444910 None:intergenic
CTCAGGTAGACAGTTTCTAT+GGG 0.510655 6_2:-17445182 None:intergenic
CCCTCGAGTGCAAAGGCAGA+AGG 0.511073 6_2:-17445096 None:intergenic
AAGGTAGCGAAATTCCTTGT+CGG 0.511527 6_2:-17445485 None:intergenic
CATAGGTTCAAATCCTACTT+GGG 0.513091 6_2:+17443220 Msa0911220:CDS
ATGACCTGATCAATTCGATC+AGG 0.514268 6_2:-17444406 None:intergenic
ATCCCTAGCTATTCAAGGGA+TGG 0.515266 6_2:+17444319 Msa0911220:CDS
CCCTAGCTATTCAAGGGATG+GGG 0.516664 6_2:+17444321 Msa0911220:CDS
CCCCATCCCTTGAATAGCTA+GGG 0.517166 6_2:-17444321 None:intergenic
TGACCTGATGACAGGGAAGC+CGG 0.518242 6_2:-17445552 None:intergenic
GATCGTTACGCCTTTCGTGC+GGG 0.520350 6_2:+17445451 Msa0911220:CDS
GCTGTGATACCGGAGGCTCT+GGG 0.521140 6_2:+17444608 Msa0911220:CDS
GAGGCGTGCAAAGGTTTCCT+CGG 0.526013 6_2:-17445135 None:intergenic
AGGCGTGCAAAGGTTTCCTC+GGG 0.527025 6_2:-17445134 None:intergenic
CCCGTCGATGTGAGCTCTTG+GGG 0.534121 6_2:+17444948 Msa0911220:CDS
CCTTGGTCTGTACTGGCACA+AGG 0.538614 6_2:+17445211 Msa0911220:CDS
ATTAAAGCGGTACGTGAGCT+GGG 0.539036 6_2:-17444851 None:intergenic
GATTTGAACCTATGACCAAT+CGG 0.544445 6_2:-17443211 None:intergenic
AAGGTTTGGCACCTCGATGT+CGG 0.545826 6_2:-17444925 None:intergenic
CTTGAATAGCTAGGGATGGA+AGG 0.548029 6_2:-17444313 None:intergenic
TGGGCGAACAGCCCAACCCT+TGG 0.548090 6_2:+17444873 Msa0911220:CDS
TAGCTCAGTGGTAGAGCGGT+CGG 0.552439 6_2:+17443181 Msa0911220:CDS
TCCCCAAGAGCTCACATCGA+CGG 0.555494 6_2:-17444949 None:intergenic
AAAGTCGTAAGACCATGTAT+GGG 0.556989 6_2:-17445615 None:intergenic
GCCAATCTCCGTCTGGCCCG+AGG 0.562208 6_2:+17445118 Msa0911220:CDS
CACTGTCTCGGAGAGAGGCT+CGG 0.562626 6_2:-17445424 None:intergenic
TGGAGCTGTAGTATGTTCCA+AGG 0.564153 6_2:-17444890 None:intergenic
ACCGAAGCCCCGGTGAACGG+CGG 0.564471 6_2:-17445527 None:intergenic
ACCGGAGGCTCTGGGGAAGT+CGG 0.567230 6_2:+17444616 Msa0911220:CDS
GACGCCTGCCCAGTGCCGGA+AGG 0.568365 6_2:-17445588 None:intergenic
TCCGGATTACATAATTCGGA+AGG 0.569927 6_2:+17443257 Msa0911220:CDS
AGCTAGGGATGGAAGGGCAG+AGG 0.570853 6_2:-17444306 None:intergenic
AGATCGTTACGCCTTTCGTG+CGG 0.574158 6_2:+17445450 Msa0911220:CDS
ATCCCTTGAATAGCTAGGGA+TGG 0.575512 6_2:-17444317 None:intergenic
TTGGAACATACTACAGCTCC+AGG 0.579135 6_2:+17444892 Msa0911220:CDS
ATCACAGCCAAAACAGCGAT+GGG 0.580909 6_2:-17444593 None:intergenic
TAAGTTCCGACCCGCACGAA+AGG 0.581321 6_2:-17445461 None:intergenic
GTCTACCTGAGACTGTCCCT+TGG 0.586612 6_2:+17445194 Msa0911220:CDS
ATGTTTGCTCTCGGTAATGG+TGG 0.588177 6_2:-17443512 None:intergenic
CTAGGCACTGTCTCGGAGAG+AGG 0.590194 6_2:-17445429 None:intergenic
TATCACAGCCAAAACAGCGA+TGG 0.590214 6_2:-17444594 None:intergenic
AAGGTAACGGAGGCGTGCAA+AGG 0.595805 6_2:-17445144 None:intergenic
CCTCGAGTGCAAAGGCAGAA+GGG 0.595841 6_2:-17445095 None:intergenic
TTCCATCCCTAGCTATTCAA+GGG 0.597126 6_2:+17444315 Msa0911220:CDS
AAAGGTTTCCTCGGGCCAGA+CGG 0.597813 6_2:-17445126 None:intergenic
TTGAATAGCTAGGGATGGAA+GGG 0.599697 6_2:-17444312 None:intergenic
CTGTGATACCGGAGGCTCTG+GGG 0.604212 6_2:+17444609 Msa0911220:CDS
GTTACGCCTTTCGTGCGGGT+CGG 0.605304 6_2:+17445455 Msa0911220:CDS
TGGGGCGTAGGCCTCCCAAA+AGG 0.606913 6_2:-17445163 None:intergenic
GTTCGGTCCATATCCGGTGT+GGG 0.608178 6_2:-17444809 None:intergenic
CCGTAACTATAACAGTCCTA+AGG 0.609931 6_2:-17445504 None:intergenic
AAGAGCTCACATCGACGGGA+AGG 0.613365 6_2:-17444944 None:intergenic
AGTTCGGTCCATATCCGGTG+TGG 0.618273 6_2:-17444810 None:intergenic
GGGCTGTTCGCCCATTAAAG+CGG 0.619701 6_2:-17444864 None:intergenic
AAGTCGTAAGACCATGTATG+GGG 0.621859 6_2:-17445614 None:intergenic
TAGACATGTCGGTGAAGATG+CGG 0.622692 6_2:-17445396 None:intergenic
GCGGTCGGCTGTTAACCGAT+TGG 0.622976 6_2:+17443196 Msa0911220:CDS
AGACAGTTTCTATGGGGCGT+AGG 0.622986 6_2:-17445175 None:intergenic
ATAGGAGAGCACTCATCTTG+GGG 0.623240 6_2:+17444640 Msa0911220:CDS
TAACGATCTAGGCACTGTCT+CGG 0.623422 6_2:-17445436 None:intergenic
AAGTTGGTGACCTGATGACA+GGG 0.627282 6_2:-17445559 None:intergenic
GTAGGCCTCCCAAAAGGTAA+CGG 0.632223 6_2:-17445157 None:intergenic
GCTCGGTGAAATAGACATGT+CGG 0.632746 6_2:-17445407 None:intergenic
CCTAGCTATTCAAGGGATGG+GGG 0.634157 6_2:+17444322 Msa0911220:CDS
GGAGCTGTAGTATGTTCCAA+GGG 0.640199 6_2:-17444889 None:intergenic
CCTTGTGCCAGTACAGACCA+AGG 0.645647 6_2:-17445211 None:intergenic
TCAGTAGCTCAGTGGTAGAG+CGG 0.647191 6_2:+17443177 Msa0911220:CDS
GCTCTACCACTGAGCTACTG+AGG 0.654077 6_2:-17443175 None:intergenic
GGGTCGGAACTTACCCGACA+AGG 0.655880 6_2:+17445471 Msa0911220:CDS
ATAGGTTCAAATCCTACTTG+GGG 0.658312 6_2:+17443221 Msa0911220:CDS
CAATGCTCTAACGCCCACAC+CGG 0.666176 6_2:+17444796 Msa0911220:CDS
AGATTGGCCCTCGAGTGCAA+AGG 0.670375 6_2:-17445103 None:intergenic
TTGACTGGAGAGGACACCAA+AGG 0.680514 6_2:+17444283 Msa0911220:intron
GGCCTCCCAAAAGGTAACGG+AGG 0.683463 6_2:-17445154 None:intergenic
AGTCGTAAGACCATGTATGG+GGG 0.686647 6_2:-17445613 None:intergenic
CTTGTGCCAGTACAGACCAA+GGG 0.693537 6_2:-17445210 None:intergenic
GTGGGCGTTAGAGCATTGAG+AGG 0.697492 6_2:-17444791 None:intergenic
GTGGCGAAGAGCCGACATCG+AGG 0.704477 6_2:+17444914 Msa0911220:CDS
CAGTCATCAATTCTCCCGAG+AGG 0.712015 6_2:+17443489 Msa0911220:intron
GTTGTTCCTCAGTAGCTCAG+TGG 0.718220 6_2:+17443169 Msa0911220:CDS
TCAGGTAGACAGTTTCTATG+GGG 0.720720 6_2:-17445181 None:intergenic
ACTGAGCTACTGAGGAACAA+CGG 0.725337 6_2:-17443167 None:intergenic
GTTACGGCCGCCGTTCACCG+GGG 0.732311 6_2:+17445520 Msa0911220:CDS
GAGCAAACATAATAATGACG+AGG 0.734813 6_2:+17443525 Msa0911220:CDS
GAACATACTACAGCTCCAGG+TGG 0.771466 6_2:+17444895 Msa0911220:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCATTTTGTTAATTCTT+CGG - chr6_2:17443596-17443615 None:intergenic 15.0%
!!! TTCATTTTAAGAACGAAATA+AGG + chr6_2:17443639-17443658 Msa0911220:intron 20.0%
! ATGTAATAGAAACAATGACA+GGG - chr6_2:17443329-17443348 None:intergenic 25.0%
! AATGTAATAGAAACAATGAC+AGG - chr6_2:17443330-17443349 None:intergenic 25.0%
! GAAAATGTTTAGTAGAACAA+AGG - chr6_2:17443429-17443448 None:intergenic 25.0%
! ATAAGAAAATCAACTAGGAT+CGG - chr6_2:17443727-17443746 None:intergenic 25.0%
! TTTGGATAAGAAAATCAACT+AGG - chr6_2:17443732-17443751 None:intergenic 25.0%
! TTATTAAGCTAAAATCTCTG+GGG - chr6_2:17443910-17443929 None:intergenic 25.0%
! CTTATTAAGCTAAAATCTCT+GGG - chr6_2:17443911-17443930 None:intergenic 25.0%
! TCTTATTAAGCTAAAATCTC+TGG - chr6_2:17443912-17443931 None:intergenic 25.0%
!!! AGAGATTTGATTTGAGAATT+GGG + chr6_2:17443986-17444005 Msa0911220:intron 25.0%
! AATAGGGAATAAGAATGAAA+AGG - chr6_2:17444028-17444047 None:intergenic 25.0%
! AGTTGAACAATCAAAATAGA+TGG + chr6_2:17444377-17444396 Msa0911220:CDS 25.0%
TCATTCCGGATTACATAATT+CGG + chr6_2:17443253-17443272 Msa0911220:CDS 30.0%
TGTTAAGTAAGAGTAGGTAA+CGG + chr6_2:17443298-17443317 Msa0911220:intron 30.0%
TGTAATAGAAACAATGACAG+GGG - chr6_2:17443328-17443347 None:intergenic 30.0%
TATGTACTAGTACTAGCAAT+AGG + chr6_2:17443450-17443469 Msa0911220:intron 30.0%
GTCATTATTATGTTTGCTCT+CGG - chr6_2:17443524-17443543 None:intergenic 30.0%
! TTTTGTTAATTCTTCGGCTT+GGG - chr6_2:17443590-17443609 None:intergenic 30.0%
! ATTTTGTTAATTCTTCGGCT+TGG - chr6_2:17443591-17443610 None:intergenic 30.0%
TAAGAAAATCAACTAGGATC+GGG - chr6_2:17443726-17443745 None:intergenic 30.0%
CACAATTATTATAGAGAGAG+AGG - chr6_2:17443945-17443964 None:intergenic 30.0%
!! GAGAGATTTGATTTGAGAAT+TGG + chr6_2:17443985-17444004 Msa0911220:intron 30.0%
!! GAGATTTGATTTGAGAATTG+GGG + chr6_2:17443987-17444006 Msa0911220:intron 30.0%
! TTCCCTATTGCTATTGAAAA+AGG + chr6_2:17444039-17444058 Msa0911220:intron 30.0%
! TCCCTATTGCTATTGAAAAA+GGG + chr6_2:17444040-17444059 Msa0911220:intron 30.0%
!!! TCCCTTTTTCAATAGCAATA+GGG - chr6_2:17444044-17444063 None:intergenic 30.0%
!!! TTCCCTTTTTCAATAGCAAT+AGG - chr6_2:17444045-17444064 None:intergenic 30.0%
! TGTTAAGCTTTTTATCATCC+TGG + chr6_2:17444078-17444097 Msa0911220:intron 30.0%
CACCTATCGTTAATGAAAAA+CGG + chr6_2:17444501-17444520 Msa0911220:intron 30.0%
!!! AGTTTTGAGAATTCAAGAGA+AGG - chr6_2:17444542-17444561 None:intergenic 30.0%
AACGGATAAAAGTTACTCTA+GGG - chr6_2:17444990-17445009 None:intergenic 30.0%
GATTTGAACCTATGACCAAT+CGG - chr6_2:17443214-17443233 None:intergenic 35.0%
TCATAGGTTCAAATCCTACT+TGG + chr6_2:17443219-17443238 Msa0911220:CDS 35.0%
CATAGGTTCAAATCCTACTT+GGG + chr6_2:17443220-17443239 Msa0911220:CDS 35.0%
ATAGGTTCAAATCCTACTTG+GGG + chr6_2:17443221-17443240 Msa0911220:CDS 35.0%
TGAAAAAAATCTCCCCAAGT+AGG - chr6_2:17443236-17443255 None:intergenic 35.0%
!!! TGGGGAGATTTTTTTCATTC+CGG + chr6_2:17443239-17443258 Msa0911220:CDS 35.0%
TCCTTCCGAATTATGTAATC+CGG - chr6_2:17443261-17443280 None:intergenic 35.0%
! TTCGCTTGTTAAGTAAGAGT+AGG + chr6_2:17443292-17443311 Msa0911220:intron 35.0%
GTTAAGTAAGAGTAGGTAAC+GGG + chr6_2:17443299-17443318 Msa0911220:intron 35.0%
ATTATGTTTGCTCTCGGTAA+TGG - chr6_2:17443518-17443537 None:intergenic 35.0%
GAGCAAACATAATAATGACG+AGG + chr6_2:17443525-17443544 Msa0911220:CDS 35.0%
! TTTGTTAATTCTTCGGCTTG+GGG - chr6_2:17443589-17443608 None:intergenic 35.0%
TATAATAATTGTGCGTTCCG+AGG + chr6_2:17443952-17443971 Msa0911220:intron 35.0%
TAGAGTTTAACCACCAAGTT+CGG + chr6_2:17444150-17444169 Msa0911220:intron 35.0%
! CATATTGACTAGTCAATGTC+AGG + chr6_2:17444251-17444270 Msa0911220:intron 35.0%
!!! AGCCGTTTTTCATTAACGAT+AGG - chr6_2:17444506-17444525 None:intergenic 35.0%
! AAAGTTACTCTAGGGATAAC+AGG - chr6_2:17444982-17445001 None:intergenic 35.0%
CAACGGATAAAAGTTACTCT+AGG - chr6_2:17444991-17445010 None:intergenic 35.0%
CCTTAGGACTGTTATAGTTA+CGG + chr6_2:17445504-17445523 Msa0911220:CDS 35.0%
AAAGTCGTAAGACCATGTAT+GGG - chr6_2:17445618-17445637 None:intergenic 35.0%
TCCGGATTACATAATTCGGA+AGG + chr6_2:17443257-17443276 Msa0911220:CDS 40.0%
ACCATCCTGTTCTGCAATAT+TGG + chr6_2:17443364-17443383 Msa0911220:intron 40.0%
TCCAATATTGCAGAACAGGA+TGG - chr6_2:17443368-17443387 None:intergenic 40.0%
AGTCTCCAATATTGCAGAAC+AGG - chr6_2:17443372-17443391 None:intergenic 40.0%
TCAATACCTAGGTGTAGGTT+GGG + chr6_2:17443397-17443416 Msa0911220:intron 40.0%
! CAAAAAGGGGAAGGACTTTT+TGG - chr6_2:17443750-17443769 None:intergenic 40.0%
! TTGGTGGTTAAACTCTACTG+CGG - chr6_2:17444147-17444166 None:intergenic 40.0%
AGAGTTTAACCACCAAGTTC+GGG + chr6_2:17444151-17444170 Msa0911220:intron 40.0%
TCGTTCATGGTTCGATATTC+TGG - chr6_2:17444210-17444229 None:intergenic 40.0%
TCGAACCATGAACGAAGTAA+AGG + chr6_2:17444215-17444234 Msa0911220:intron 40.0%
TCATGCCTTTACTTCGTTCA+TGG - chr6_2:17444223-17444242 None:intergenic 40.0%
TTGAATAGCTAGGGATGGAA+GGG - chr6_2:17444315-17444334 None:intergenic 40.0%
TTCCATCCCTAGCTATTCAA+GGG + chr6_2:17444315-17444334 Msa0911220:CDS 40.0%
ATTGCCTGATCGAATTGATC+AGG + chr6_2:17444402-17444421 Msa0911220:CDS 40.0%
ATGACCTGATCAATTCGATC+AGG - chr6_2:17444409-17444428 None:intergenic 40.0%
GATCAGGTCATGTAAGAACA+AGG + chr6_2:17444418-17444437 Msa0911220:intron 40.0%
AGAACAAGGTTCAAGTCTAC+CGG + chr6_2:17444432-17444451 Msa0911220:intron 40.0%
CATTAACGATAGGTGTCAAG+TGG - chr6_2:17444496-17444515 None:intergenic 40.0%
GAGAATTCAAGAGAAGGTCA+CGG - chr6_2:17444536-17444555 None:intergenic 40.0%
!! AATAGGAGAGCACTCATCTT+GGG + chr6_2:17444639-17444658 Msa0911220:CDS 40.0%
TGTAGTATGTTCCAAGGGTT+GGG - chr6_2:17444887-17444906 None:intergenic 40.0%
! AACTTTTATCCGTTGAGCGA+CGG + chr6_2:17444996-17445015 Msa0911220:intron 40.0%
TCAGGTAGACAGTTTCTATG+GGG - chr6_2:17445184-17445203 None:intergenic 40.0%
CTCAGGTAGACAGTTTCTAT+GGG - chr6_2:17445185-17445204 None:intergenic 40.0%
TCTCAGGTAGACAGTTTCTA+TGG - chr6_2:17445186-17445205 None:intergenic 40.0%
AAGGTAGCGAAATTCCTTGT+CGG - chr6_2:17445488-17445507 None:intergenic 40.0%
ACAAGGAATTTCGCTACCTT+AGG + chr6_2:17445488-17445507 Msa0911220:CDS 40.0%
CCGTAACTATAACAGTCCTA+AGG - chr6_2:17445507-17445526 None:intergenic 40.0%
AAGTCGTAAGACCATGTATG+GGG - chr6_2:17445617-17445636 None:intergenic 40.0%
CAAAGTCGTAAGACCATGTA+TGG - chr6_2:17445619-17445638 None:intergenic 40.0%
! TACATGGTCTTACGACTTTG+CGG + chr6_2:17445619-17445638 Msa0911220:CDS 40.0%
ACTGAGCTACTGAGGAACAA+CGG - chr6_2:17443170-17443189 None:intergenic 45.0%
! GCTGTTAACCGATTGGTCAT+AGG + chr6_2:17443203-17443222 Msa0911220:CDS 45.0%
TCTGCAATATTGGAGACTCG+CGG + chr6_2:17443374-17443393 Msa0911220:intron 45.0%
GTCAATACCTAGGTGTAGGT+TGG + chr6_2:17443396-17443415 Msa0911220:intron 45.0%
CAATACCTAGGTGTAGGTTG+GGG + chr6_2:17443398-17443417 Msa0911220:intron 45.0%
! ATGTTTGCTCTCGGTAATGG+TGG - chr6_2:17443515-17443534 None:intergenic 45.0%
! AAAGTCCTTCCCCTTTTTGC+CGG + chr6_2:17443751-17443770 Msa0911220:intron 45.0%
GAACAGATCTTGTGGAGACA+GGG - chr6_2:17443856-17443875 None:intergenic 45.0%
TCTCCACAAGATCTGTTCCT+CGG + chr6_2:17443858-17443877 Msa0911220:intron 45.0%
GGAGAGGAAAGGTTTCTTGT+AGG - chr6_2:17443889-17443908 None:intergenic 45.0%
! AAAATCTCTGGGGAGAGGAA+AGG - chr6_2:17443900-17443919 None:intergenic 45.0%
! AAGCTAAAATCTCTGGGGAG+AGG - chr6_2:17443905-17443924 None:intergenic 45.0%
TTTAACCACCAAGTTCGGGA+TGG + chr6_2:17444155-17444174 Msa0911220:intron 45.0%
GTTCGATATTCTGGTGTCCT+AGG - chr6_2:17444201-17444220 None:intergenic 45.0%
GTCAGGTCCTAATTCTTGAC+TGG + chr6_2:17444268-17444287 Msa0911220:intron 45.0%
GTCCTAATTCTTGACTGGAG+AGG + chr6_2:17444273-17444292 Msa0911220:intron 45.0%
GTCCTCTCCAGTCAAGAATT+AGG - chr6_2:17444278-17444297 None:intergenic 45.0%
CTTGAATAGCTAGGGATGGA+AGG - chr6_2:17444316-17444335 None:intergenic 45.0%
CTTCCATCCCTAGCTATTCA+AGG + chr6_2:17444314-17444333 Msa0911220:CDS 45.0%
ATCCCTTGAATAGCTAGGGA+TGG - chr6_2:17444320-17444339 None:intergenic 45.0%
ATCCCTAGCTATTCAAGGGA+TGG + chr6_2:17444319-17444338 Msa0911220:CDS 45.0%
TCCCTAGCTATTCAAGGGAT+GGG + chr6_2:17444320-17444339 Msa0911220:CDS 45.0%
TTCAAGTCTACCGGTCTGTT+AGG + chr6_2:17444441-17444460 Msa0911220:intron 45.0%
TGCAGTAATGTATGCAGCTG+AGG - chr6_2:17444470-17444489 None:intergenic 45.0%
ATCACAGCCAAAACAGCGAT+GGG - chr6_2:17444596-17444615 None:intergenic 45.0%
TATCACAGCCAAAACAGCGA+TGG - chr6_2:17444597-17444616 None:intergenic 45.0%
!! GAATAGGAGAGCACTCATCT+TGG + chr6_2:17444638-17444657 Msa0911220:CDS 45.0%
!! ATAGGAGAGCACTCATCTTG+GGG + chr6_2:17444640-17444659 Msa0911220:CDS 45.0%
TTTACCGTTGGCACGATAAC+TGG + chr6_2:17444721-17444740 Msa0911220:intron 45.0%
ATTAAAGCGGTACGTGAGCT+GGG - chr6_2:17444854-17444873 None:intergenic 45.0%
AGCTCACGTACCGCTTTAAT+GGG + chr6_2:17444854-17444873 Msa0911220:CDS 45.0%
CTGTAGTATGTTCCAAGGGT+TGG - chr6_2:17444888-17444907 None:intergenic 45.0%
GGAGCTGTAGTATGTTCCAA+GGG - chr6_2:17444892-17444911 None:intergenic 45.0%
TGGAGCTGTAGTATGTTCCA+AGG - chr6_2:17444893-17444912 None:intergenic 45.0%
TTGGAACATACTACAGCTCC+AGG + chr6_2:17444892-17444911 Msa0911220:CDS 45.0%
!! GAATTCTAGCTCTTCCAGAG+TGG + chr6_2:17445237-17445256 Msa0911220:intron 45.0%
ATGAAGCTTCACTGTTCCCT+GGG - chr6_2:17445348-17445367 None:intergenic 45.0%
TATGAAGCTTCACTGTTCCC+TGG - chr6_2:17445349-17445368 None:intergenic 45.0%
AGGGAACAGTGAAGCTTCAT+AGG + chr6_2:17445348-17445367 Msa0911220:intron 45.0%
GGGAACAGTGAAGCTTCATA+GGG + chr6_2:17445349-17445368 Msa0911220:intron 45.0%
TTCATAGGGTCTTTCTGTCC+AGG + chr6_2:17445363-17445382 Msa0911220:intron 45.0%
TAGACATGTCGGTGAAGATG+CGG - chr6_2:17445399-17445418 None:intergenic 45.0%
! GCTCGGTGAAATAGACATGT+CGG - chr6_2:17445410-17445429 None:intergenic 45.0%
! TAACGATCTAGGCACTGTCT+CGG - chr6_2:17445439-17445458 None:intergenic 45.0%
AGGTAGCGAAATTCCTTGTC+GGG - chr6_2:17445487-17445506 None:intergenic 45.0%
!! AAGTTGGTGACCTGATGACA+GGG - chr6_2:17445562-17445581 None:intergenic 45.0%
CACCAACTTCCTTAACCTTC+CGG + chr6_2:17445573-17445592 Msa0911220:CDS 45.0%
AGTCGTAAGACCATGTATGG+GGG - chr6_2:17445616-17445635 None:intergenic 45.0%
! TTTGCGGAGACCTGTGTTTT+TGG + chr6_2:17445635-17445654 Msa0911220:CDS 45.0%
GTTGTTCCTCAGTAGCTCAG+TGG + chr6_2:17443169-17443188 Msa0911220:CDS 50.0%
TCAGTAGCTCAGTGGTAGAG+CGG + chr6_2:17443177-17443196 Msa0911220:CDS 50.0%
AGTATCCCCAACCTACACCT+AGG - chr6_2:17443406-17443425 None:intergenic 50.0%
CAGTCATCAATTCTCCCGAG+AGG + chr6_2:17443489-17443508 Msa0911220:intron 50.0%
GGCTAGTGGAAGCAAAGCTA+TGG - chr6_2:17443705-17443724 None:intergenic 50.0%
! ATCAACTAGGATCGGGCTAG+TGG - chr6_2:17443719-17443738 None:intergenic 50.0%
!! TTCCCCTTTTTGCCGGTTGT+GGG + chr6_2:17443758-17443777 Msa0911220:intron 50.0%
GCTCAGAGGATTAGAGCATG+TGG - chr6_2:17443822-17443841 None:intergenic 50.0%
GCTCTAATCCTCTGAGCTAC+AGG + chr6_2:17443825-17443844 Msa0911220:intron 50.0%
AGATCTTGTGGAGACAGGGT+GGG - chr6_2:17443852-17443871 None:intergenic 50.0%
GGAACAGATCTTGTGGAGAC+AGG - chr6_2:17443857-17443876 None:intergenic 50.0%
GTTTCTTGTAGGTTCCTCCG+AGG - chr6_2:17443878-17443897 None:intergenic 50.0%
ATCTCTCCCACTTCACACCT+CGG - chr6_2:17443972-17443991 None:intergenic 50.0%
ACTGCGGTGACGATACTGTA+GGG - chr6_2:17444131-17444150 None:intergenic 50.0%
TACTGCGGTGACGATACTGT+AGG - chr6_2:17444132-17444151 None:intergenic 50.0%
ACACCAATCCATCCCGAACT+TGG - chr6_2:17444166-17444185 None:intergenic 50.0%
!! AAGTTCGGGATGGATTGGTG+TGG + chr6_2:17444165-17444184 Msa0911220:intron 50.0%
TTGACTGGAGAGGACACCAA+AGG + chr6_2:17444283-17444302 Msa0911220:intron 50.0%
CCCCATCCCTTGAATAGCTA+GGG - chr6_2:17444324-17444343 None:intergenic 50.0%
CCCTAGCTATTCAAGGGATG+GGG + chr6_2:17444321-17444340 Msa0911220:CDS 50.0%
CCTAGCTATTCAAGGGATGG+GGG + chr6_2:17444322-17444341 Msa0911220:CDS 50.0%
! CAGAGAACCCATCGCTGTTT+TGG + chr6_2:17444586-17444605 Msa0911220:CDS 50.0%
!!! CGCTGTTTTGGCTGTGATAC+CGG + chr6_2:17444598-17444617 Msa0911220:CDS 50.0%
!!! TGTTTTGGCTGTGATACCGG+AGG + chr6_2:17444601-17444620 Msa0911220:CDS 50.0%
TGTGCCAGTTATCGTGCCAA+CGG - chr6_2:17444728-17444747 None:intergenic 50.0%
TTTCCCTAGTACGAGAGGAC+CGG - chr6_2:17444768-17444787 None:intergenic 50.0%
GAGACAGTTCGGTCCATATC+CGG - chr6_2:17444818-17444837 None:intergenic 50.0%
CAGAACGTCGTGAGACAGTT+CGG - chr6_2:17444829-17444848 None:intergenic 50.0%
CATTAAAGCGGTACGTGAGC+TGG - chr6_2:17444855-17444874 None:intergenic 50.0%
CAGCTCACGTACCGCTTTAA+TGG + chr6_2:17444853-17444872 Msa0911220:CDS 50.0%
GAACATACTACAGCTCCAGG+TGG + chr6_2:17444895-17444914 Msa0911220:CDS 50.0%
AAGGTTTGGCACCTCGATGT+CGG - chr6_2:17444928-17444947 None:intergenic 50.0%
GTAGGCCTCCCAAAAGGTAA+CGG - chr6_2:17445160-17445179 None:intergenic 50.0%
AGACAGTTTCTATGGGGCGT+AGG - chr6_2:17445178-17445197 None:intergenic 50.0%
CTTGTGCCAGTACAGACCAA+GGG - chr6_2:17445213-17445232 None:intergenic 50.0%
CGATCAGTGAGATACCACTC+TGG - chr6_2:17445254-17445273 None:intergenic 50.0%
GCTTAGGTGGAAGGCAAAGA+AGG - chr6_2:17445300-17445319 None:intergenic 50.0%
AAAAGCCCAAAGCCAATCCC+AGG + chr6_2:17445328-17445347 Msa0911220:intron 50.0%
AAAGCCCAAAGCCAATCCCA+GGG + chr6_2:17445329-17445348 Msa0911220:intron 50.0%
!! TGTTCCCTGGGATTGGCTTT+GGG - chr6_2:17445336-17445355 None:intergenic 50.0%
! CACGAAAGGCGTAACGATCT+AGG - chr6_2:17445450-17445469 None:intergenic 50.0%
AGATCGTTACGCCTTTCGTG+CGG + chr6_2:17445450-17445469 Msa0911220:CDS 50.0%
!! GAAGTTGGTGACCTGATGAC+AGG - chr6_2:17445563-17445582 None:intergenic 50.0%
TGCCGGAAGGTTAAGGAAGT+TGG - chr6_2:17445578-17445597 None:intergenic 50.0%
TTCCTTAACCTTCCGGCACT+GGG + chr6_2:17445580-17445599 Msa0911220:CDS 50.0%
GCTCTACCACTGAGCTACTG+AGG - chr6_2:17443178-17443197 None:intergenic 55.0%
TAGCTCAGTGGTAGAGCGGT+CGG + chr6_2:17443181-17443200 Msa0911220:CDS 55.0%
GAGACTCGCGGTCAATACCT+AGG + chr6_2:17443386-17443405 Msa0911220:intron 55.0%
CGCGGTCAATACCTAGGTGT+AGG + chr6_2:17443392-17443411 Msa0911220:intron 55.0%
! TCTCGGTAATGGTGGCCTCT+CGG - chr6_2:17443507-17443526 None:intergenic 55.0%
CACAACCGGCAAAAAGGGGA+AGG - chr6_2:17443759-17443778 None:intergenic 55.0%
!! CTTCCCCTTTTTGCCGGTTG+TGG + chr6_2:17443757-17443776 Msa0911220:intron 55.0%
TCGCCCACAACCGGCAAAAA+GGG - chr6_2:17443764-17443783 None:intergenic 55.0%
TGGCTACGAACCACGATGTC+GGG - chr6_2:17443802-17443821 None:intergenic 55.0%
GTGGCTACGAACCACGATGT+CGG - chr6_2:17443803-17443822 None:intergenic 55.0%
GATCTTGTGGAGACAGGGTG+GGG - chr6_2:17443851-17443870 None:intergenic 55.0%
CAGATCTTGTGGAGACAGGG+TGG - chr6_2:17443853-17443872 None:intergenic 55.0%
CCTCCGAGGAACAGATCTTG+TGG - chr6_2:17443864-17443883 None:intergenic 55.0%
CCACAAGATCTGTTCCTCGG+AGG + chr6_2:17443861-17443880 Msa0911220:intron 55.0%
TGCGTTCCGAGGTGTGAAGT+GGG + chr6_2:17443963-17443982 Msa0911220:intron 55.0%
GGTCCTGCGGGAAAATAGCT+CGG - chr6_2:17444106-17444125 None:intergenic 55.0%
ATACTGTAGGGGAGGTCCTG+CGG - chr6_2:17444119-17444138 None:intergenic 55.0%
CTGCGGTGACGATACTGTAG+GGG - chr6_2:17444130-17444149 None:intergenic 55.0%
CCAATCCATCCCGAACTTGG+TGG - chr6_2:17444163-17444182 None:intergenic 55.0%
CCACCAAGTTCGGGATGGAT+TGG + chr6_2:17444160-17444179 Msa0911220:intron 55.0%
TTCTGGTGTCCTAGGCGTAG+AGG - chr6_2:17444193-17444212 None:intergenic 55.0%
CCCCCATCCCTTGAATAGCT+AGG - chr6_2:17444325-17444344 None:intergenic 55.0%
ATTCAAGGGATGGGGGACAG+AGG + chr6_2:17444329-17444348 Msa0911220:CDS 55.0%
! GCTGAGGCATCCTAACAGAC+CGG - chr6_2:17444454-17444473 None:intergenic 55.0%
! TTCTTTTGCTCCATCCCCGC+AGG + chr6_2:17444561-17444580 Msa0911220:intron 55.0%
! TCTTTTGCTCCATCCCCGCA+GGG + chr6_2:17444562-17444581 Msa0911220:intron 55.0%
!! GAGAGCACTCATCTTGGGGT+GGG + chr6_2:17444644-17444663 Msa0911220:intron 55.0%
AAACGCTGGGTAGCCAAGTG+CGG - chr6_2:17444704-17444723 None:intergenic 55.0%
TCGTGCCAACGGTAAACGCT+GGG - chr6_2:17444717-17444736 None:intergenic 55.0%
ATCGTGCCAACGGTAAACGC+TGG - chr6_2:17444718-17444737 None:intergenic 55.0%
CACGATAACTGGCACACCAG+AGG + chr6_2:17444732-17444751 Msa0911220:intron 55.0%
TTCCCGGTCCTCTCGTACTA+GGG + chr6_2:17444762-17444781 Msa0911220:intron 55.0%
TTCCCTAGTACGAGAGGACC+GGG - chr6_2:17444767-17444786 None:intergenic 55.0%
GGTCCTCTCGTACTAGGGAA+AGG + chr6_2:17444767-17444786 Msa0911220:intron 55.0%
GGACCTTTCCCTAGTACGAG+AGG - chr6_2:17444773-17444792 None:intergenic 55.0%
!! GTGGGCGTTAGAGCATTGAG+AGG - chr6_2:17444794-17444813 None:intergenic 55.0%
CAATGCTCTAACGCCCACAC+CGG + chr6_2:17444796-17444815 Msa0911220:CDS 55.0%
TCTAACGCCCACACCGGATA+TGG + chr6_2:17444802-17444821 Msa0911220:CDS 55.0%
GTTCGGTCCATATCCGGTGT+GGG - chr6_2:17444812-17444831 None:intergenic 55.0%
AGTTCGGTCCATATCCGGTG+TGG - chr6_2:17444813-17444832 None:intergenic 55.0%
GGGCTGTTCGCCCATTAAAG+CGG - chr6_2:17444867-17444886 None:intergenic 55.0%
CTCACATCGACGGGAAGGTT+TGG - chr6_2:17444942-17444961 None:intergenic 55.0%
AAGAGCTCACATCGACGGGA+AGG - chr6_2:17444947-17444966 None:intergenic 55.0%
TTCCCGTCGATGTGAGCTCT+TGG + chr6_2:17444946-17444965 Msa0911220:CDS 55.0%
TCCCGTCGATGTGAGCTCTT+GGG + chr6_2:17444947-17444966 Msa0911220:CDS 55.0%
TCCCCAAGAGCTCACATCGA+CGG - chr6_2:17444952-17444971 None:intergenic 55.0%
AGTCGGCCTTAGTGATCCGA+CGG - chr6_2:17445037-17445056 None:intergenic 55.0%
CCTCGAGTGCAAAGGCAGAA+GGG - chr6_2:17445098-17445117 None:intergenic 55.0%
CCTTCTGCCTTTGCACTCGA+GGG + chr6_2:17445096-17445115 Msa0911220:CDS 55.0%
! AGATTGGCCCTCGAGTGCAA+AGG - chr6_2:17445106-17445125 None:intergenic 55.0%
AAAGGTTTCCTCGGGCCAGA+CGG - chr6_2:17445129-17445148 None:intergenic 55.0%
AGGCGTGCAAAGGTTTCCTC+GGG - chr6_2:17445137-17445156 None:intergenic 55.0%
GAGGCGTGCAAAGGTTTCCT+CGG - chr6_2:17445138-17445157 None:intergenic 55.0%
!! AAGGTAACGGAGGCGTGCAA+AGG - chr6_2:17445147-17445166 None:intergenic 55.0%
! TGCACGCCTCCGTTACCTTT+TGG + chr6_2:17445148-17445167 Msa0911220:CDS 55.0%
! GCACGCCTCCGTTACCTTTT+GGG + chr6_2:17445149-17445168 Msa0911220:CDS 55.0%
GTCTACCTGAGACTGTCCCT+TGG + chr6_2:17445194-17445213 Msa0911220:CDS 55.0%
ACAGACCAAGGGACAGTCTC+AGG - chr6_2:17445202-17445221 None:intergenic 55.0%
GACTGTCCCTTGGTCTGTAC+TGG + chr6_2:17445204-17445223 Msa0911220:CDS 55.0%
CCTTGTGCCAGTACAGACCA+AGG - chr6_2:17445214-17445233 None:intergenic 55.0%
! CCTTGGTCTGTACTGGCACA+AGG + chr6_2:17445211-17445230 Msa0911220:CDS 55.0%
AGGCAAAGAAGGCCTCCTTC+CGG - chr6_2:17445289-17445308 None:intergenic 55.0%
! CTTTTCCTGCGCAGCTTAGG+TGG - chr6_2:17445313-17445332 None:intergenic 55.0%
!! CTGTTCCCTGGGATTGGCTT+TGG - chr6_2:17445337-17445356 None:intergenic 55.0%
GCTTCACTGTTCCCTGGGAT+TGG - chr6_2:17445343-17445362 None:intergenic 55.0%
GATCGTTACGCCTTTCGTGC+GGG + chr6_2:17445451-17445470 Msa0911220:CDS 55.0%
TAAGTTCCGACCCGCACGAA+AGG - chr6_2:17445464-17445483 None:intergenic 55.0%
TGACCTGATGACAGGGAAGC+CGG - chr6_2:17445555-17445574 None:intergenic 55.0%
CTTCCTTAACCTTCCGGCAC+TGG + chr6_2:17445579-17445598 Msa0911220:CDS 55.0%
GCGGTCGGCTGTTAACCGAT+TGG + chr6_2:17443196-17443215 Msa0911220:CDS 60.0%
! CTCGGTAATGGTGGCCTCTC+GGG - chr6_2:17443506-17443525 None:intergenic 60.0%
CGCCCACAACCGGCAAAAAG+GGG - chr6_2:17443763-17443782 None:intergenic 60.0%
CTCGCCCACAACCGGCAAAA+AGG - chr6_2:17443765-17443784 None:intergenic 60.0%
!! CTTTTTGCCGGTTGTGGGCG+AGG + chr6_2:17443763-17443782 Msa0911220:intron 60.0%
AATCCCTCCTCGCCCACAAC+CGG - chr6_2:17443773-17443792 None:intergenic 60.0%
GATTCGAACCCCCGACATCG+TGG + chr6_2:17443789-17443808 Msa0911220:intron 60.0%
GCTACGAACCACGATGTCGG+GGG - chr6_2:17443800-17443819 None:intergenic 60.0%
GGCTACGAACCACGATGTCG+GGG - chr6_2:17443801-17443820 None:intergenic 60.0%
GTGCGTTCCGAGGTGTGAAG+TGG + chr6_2:17443962-17443981 Msa0911220:intron 60.0%
TACTGTAGGGGAGGTCCTGC+GGG - chr6_2:17444118-17444137 None:intergenic 60.0%
CGGTGACGATACTGTAGGGG+AGG - chr6_2:17444127-17444146 None:intergenic 60.0%
GGTGTGGTTCCTCTACGCCT+AGG + chr6_2:17444181-17444200 Msa0911220:intron 60.0%
GATGGAAGGGCAGAGGCCTT+TGG - chr6_2:17444302-17444321 None:intergenic 60.0%
AGCTAGGGATGGAAGGGCAG+AGG - chr6_2:17444309-17444328 None:intergenic 60.0%
! GGGATGGGGGACAGAGGTTT+TGG + chr6_2:17444335-17444354 Msa0911220:CDS 60.0%
! CTTTTGCTCCATCCCCGCAG+GGG + chr6_2:17444563-17444582 Msa0911220:intron 60.0%
GCTGTGATACCGGAGGCTCT+GGG + chr6_2:17444608-17444627 Msa0911220:CDS 60.0%
CTGTGATACCGGAGGCTCTG+GGG + chr6_2:17444609-17444628 Msa0911220:CDS 60.0%
!! GGCTCTGGGGAAGTCGGAAT+AGG + chr6_2:17444622-17444641 Msa0911220:CDS 60.0%
!! GGAGAGCACTCATCTTGGGG+TGG + chr6_2:17444643-17444662 Msa0911220:intron 60.0%
GCAGTTATCCGCTCCGCACT+TGG + chr6_2:17444688-17444707 Msa0911220:intron 60.0%
GGCTACCCAGCGTTTACCGT+TGG + chr6_2:17444709-17444728 Msa0911220:intron 60.0%
CTAGTACGAGAGGACCGGGA+AGG - chr6_2:17444763-17444782 None:intergenic 60.0%
CTTCCCGGTCCTCTCGTACT+AGG + chr6_2:17444761-17444780 Msa0911220:intron 60.0%
CCCCAAGAGCTCACATCGAC+GGG - chr6_2:17444951-17444970 None:intergenic 60.0%
CCCGTCGATGTGAGCTCTTG+GGG + chr6_2:17444948-17444967 Msa0911220:CDS 60.0%
TCGGCACCGTCGGATCACTA+AGG + chr6_2:17445028-17445047 Msa0911220:intron 60.0%
CGTCGAGCAGGGACGAAAGT+CGG - chr6_2:17445054-17445073 None:intergenic 60.0%
CGACTTTCGTCCCTGCTCGA+CGG + chr6_2:17445052-17445071 Msa0911220:intron 60.0%
GACTTTCGTCCCTGCTCGAC+GGG + chr6_2:17445053-17445072 Msa0911220:intron 60.0%
CCCTTCTGCCTTTGCACTCG+AGG + chr6_2:17445095-17445114 Msa0911220:CDS 60.0%
CCCTCGAGTGCAAAGGCAGA+AGG - chr6_2:17445099-17445118 None:intergenic 60.0%
! CGCCTCCGTTACCTTTTGGG+AGG + chr6_2:17445152-17445171 Msa0911220:CDS 60.0%
! GGCCTCCCAAAAGGTAACGG+AGG - chr6_2:17445157-17445176 None:intergenic 60.0%
AAAGAAGGCCTCCTTCCGGG+GGG - chr6_2:17445285-17445304 None:intergenic 60.0%
CAAAGAAGGCCTCCTTCCGG+GGG - chr6_2:17445286-17445305 None:intergenic 60.0%
GCAAAGAAGGCCTCCTTCCG+GGG - chr6_2:17445287-17445306 None:intergenic 60.0%
GGCAAAGAAGGCCTCCTTCC+GGG - chr6_2:17445288-17445307 None:intergenic 60.0%
TCCTGCGCAGCTTAGGTGGA+AGG - chr6_2:17445309-17445328 None:intergenic 60.0%
! GGGCTTTTCCTGCGCAGCTT+AGG - chr6_2:17445316-17445335 None:intergenic 60.0%
GGGTCTTTCTGTCCAGGTGC+AGG + chr6_2:17445369-17445388 Msa0911220:intron 60.0%
! AGATGCGGACTACCTGCACC+TGG - chr6_2:17445384-17445403 None:intergenic 60.0%
CACTGTCTCGGAGAGAGGCT+CGG - chr6_2:17445427-17445446 None:intergenic 60.0%
! CTAGGCACTGTCTCGGAGAG+AGG - chr6_2:17445432-17445451 None:intergenic 60.0%
GTTACGCCTTTCGTGCGGGT+CGG + chr6_2:17445455-17445474 Msa0911220:CDS 60.0%
GGGTCGGAACTTACCCGACA+AGG + chr6_2:17445471-17445490 Msa0911220:CDS 60.0%
TAGTTACGGCCGCCGTTCAC+CGG + chr6_2:17445518-17445537 Msa0911220:CDS 60.0%
! TGCCCAGTGCCGGAAGGTTA+AGG - chr6_2:17445585-17445604 None:intergenic 60.0%
! TTAACCTTCCGGCACTGGGC+AGG + chr6_2:17445584-17445603 Msa0911220:CDS 60.0%
! TTTGCCGGTTGTGGGCGAGG+AGG + chr6_2:17443766-17443785 Msa0911220:intron 65.0%
! TTGCCGGTTGTGGGCGAGGA+GGG + chr6_2:17443767-17443786 Msa0911220:intron 65.0%
CGGGAAAATAGCTCGGCGCC+AGG - chr6_2:17444099-17444118 None:intergenic 65.0%
!! GCGCCGAGCTATTTTCCCGC+AGG + chr6_2:17444100-17444119 Msa0911220:intron 65.0%
ATGGGTTCTCTGCCCCTGCG+GGG - chr6_2:17444578-17444597 None:intergenic 65.0%
! GATGGGTTCTCTGCCCCTGC+GGG - chr6_2:17444579-17444598 None:intergenic 65.0%
! CGATGGGTTCTCTGCCCCTG+CGG - chr6_2:17444580-17444599 None:intergenic 65.0%
GGCTGTGATACCGGAGGCTC+TGG + chr6_2:17444607-17444626 Msa0911220:CDS 65.0%
!! ACCGGAGGCTCTGGGGAAGT+CGG + chr6_2:17444616-17444635 Msa0911220:CDS 65.0%
TCCGACTTCCCCAGAGCCTC+CGG - chr6_2:17444620-17444639 None:intergenic 65.0%
CTGGGTAGCCAAGTGCGGAG+CGG - chr6_2:17444699-17444718 None:intergenic 65.0%
! CACCAGAGGTGCGTCCTTCC+CGG + chr6_2:17444746-17444765 Msa0911220:intron 65.0%
TGGGCGAACAGCCCAACCCT+TGG + chr6_2:17444873-17444892 Msa0911220:CDS 65.0%
!! GATGTCGGCTCTTCGCCACC+TGG - chr6_2:17444913-17444932 None:intergenic 65.0%
GTGGCGAAGAGCCGACATCG+AGG + chr6_2:17444914-17444933 Msa0911220:CDS 65.0%
GTGGAAGGGCCGTCGCTCAA+CGG - chr6_2:17445008-17445027 None:intergenic 65.0%
TGAGCGACGGCCCTTCCACT+CGG + chr6_2:17445009-17445028 Msa0911220:intron 65.0%
! TCCGACGGTGCCGAGTGGAA+GGG - chr6_2:17445022-17445041 None:intergenic 65.0%
! ATCCGACGGTGCCGAGTGGA+AGG - chr6_2:17445023-17445042 None:intergenic 65.0%
! AGTGATCCGACGGTGCCGAG+TGG - chr6_2:17445027-17445046 None:intergenic 65.0%
TTTCGTCCCTGCTCGACGGG+TGG + chr6_2:17445056-17445075 Msa0911220:intron 65.0%
TTCGTCCCTGCTCGACGGGT+GGG + chr6_2:17445057-17445076 Msa0911220:intron 65.0%
CAAGACCCACCCGTCGAGCA+GGG - chr6_2:17445065-17445084 None:intergenic 65.0%
CTCGAGGGCCAATCTCCGTC+TGG + chr6_2:17445111-17445130 Msa0911220:CDS 65.0%
TCCTCGGGCCAGACGGAGAT+TGG - chr6_2:17445122-17445141 None:intergenic 65.0%
TGGGGCGTAGGCCTCCCAAA+AGG - chr6_2:17445166-17445185 None:intergenic 65.0%
AAGAAGGCCTCCTTCCGGGG+GGG - chr6_2:17445284-17445303 None:intergenic 65.0%
GCCTTCCACCTAAGCTGCGC+AGG + chr6_2:17445305-17445324 Msa0911220:intron 65.0%
AGTTACGGCCGCCGTTCACC+GGG + chr6_2:17445519-17445538 Msa0911220:CDS 65.0%
!! TCGCCGGCTTCCCTGTCATC+AGG + chr6_2:17445549-17445568 Msa0911220:CDS 65.0%
CAGGCGTCAGCCCCCATACA+TGG + chr6_2:17445603-17445622 Msa0911220:CDS 65.0%
GGGTGGGGCCTGTAGCTCAG+AGG - chr6_2:17443836-17443855 None:intergenic 70.0%
GTTCTCTGCCCCTGCGGGGA+TGG - chr6_2:17444574-17444593 None:intergenic 70.0%
GACCGGGAAGGACGCACCTC+TGG - chr6_2:17444751-17444770 None:intergenic 70.0%
GCCCTTCCACTCGGCACCGT+CGG + chr6_2:17445018-17445037 Msa0911220:intron 70.0%
GCAAGACCCACCCGTCGAGC+AGG - chr6_2:17445066-17445085 None:intergenic 70.0%
GCCAATCTCCGTCTGGCCCG+AGG + chr6_2:17445118-17445137 Msa0911220:CDS 70.0%
AGAAGGCCTCCTTCCGGGGG+GGG - chr6_2:17445283-17445302 None:intergenic 70.0%
GTTACGGCCGCCGTTCACCG+GGG + chr6_2:17445520-17445539 Msa0911220:CDS 70.0%
ACCGAAGCCCCGGTGAACGG+CGG - chr6_2:17445530-17445549 None:intergenic 70.0%
GCGACCGAAGCCCCGGTGAA+CGG - chr6_2:17445533-17445552 None:intergenic 70.0%
TTCACCGGGGCTTCGGTCGC+CGG + chr6_2:17445533-17445552 Msa0911220:CDS 70.0%
CTGATCGCTCGAGCCCCCCC+CGG + chr6_2:17445267-17445286 Msa0911220:intron 75.0%
GCCGCCGTTCACCGGGGCTT+CGG + chr6_2:17445526-17445545 Msa0911220:CDS 75.0%
GAAGCCGGCGACCGAAGCCC+CGG - chr6_2:17445540-17445559 None:intergenic 75.0%
! GACGCCTGCCCAGTGCCGGA+AGG - chr6_2:17445591-17445610 None:intergenic 75.0%
GGCTGACGCCTGCCCAGTGC+CGG - chr6_2:17445595-17445614 None:intergenic 75.0%
! TCGCTCGAGCCCCCCCCGGA+AGG + chr6_2:17445271-17445290 Msa0911220:intron 80.0%
! CTCGAGCCCCCCCCGGAAGG+AGG + chr6_2:17445274-17445293 Msa0911220:intron 80.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 17443152 17445660 17443152 ID=Msa0911220;Name=Msa0911220
chr6_2 mRNA 17443152 17445660 17443152 ID=Msa0911220-mRNA-1;Parent=Msa0911220;Name=Msa0911220-mRNA-1;_AED=0.53;_eAED=0.54;_QI=0|0|0|0.42|1|1|7|0|359
chr6_2 exon 17443152 17443303 17443152 ID=Msa0911220-mRNA-1:exon:3680;Parent=Msa0911220-mRNA-1
chr6_2 exon 17443492 17443579 17443492 ID=Msa0911220-mRNA-1:exon:3681;Parent=Msa0911220-mRNA-1
chr6_2 exon 17444295 17444423 17444295 ID=Msa0911220-mRNA-1:exon:3682;Parent=Msa0911220-mRNA-1
chr6_2 exon 17444583 17444661 17444583 ID=Msa0911220-mRNA-1:exon:3683;Parent=Msa0911220-mRNA-1
chr6_2 exon 17444783 17444993 17444783 ID=Msa0911220-mRNA-1:exon:3684;Parent=Msa0911220-mRNA-1
chr6_2 exon 17445088 17445232 17445088 ID=Msa0911220-mRNA-1:exon:3685;Parent=Msa0911220-mRNA-1
chr6_2 exon 17445385 17445660 17445385 ID=Msa0911220-mRNA-1:exon:3686;Parent=Msa0911220-mRNA-1
chr6_2 CDS 17443152 17443303 17443152 ID=Msa0911220-mRNA-1:cds;Parent=Msa0911220-mRNA-1
chr6_2 CDS 17443492 17443579 17443492 ID=Msa0911220-mRNA-1:cds;Parent=Msa0911220-mRNA-1
chr6_2 CDS 17444295 17444423 17444295 ID=Msa0911220-mRNA-1:cds;Parent=Msa0911220-mRNA-1
chr6_2 CDS 17444583 17444661 17444583 ID=Msa0911220-mRNA-1:cds;Parent=Msa0911220-mRNA-1
chr6_2 CDS 17444783 17444993 17444783 ID=Msa0911220-mRNA-1:cds;Parent=Msa0911220-mRNA-1
chr6_2 CDS 17445088 17445232 17445088 ID=Msa0911220-mRNA-1:cds;Parent=Msa0911220-mRNA-1
chr6_2 CDS 17445385 17445660 17445385 ID=Msa0911220-mRNA-1:cds;Parent=Msa0911220-mRNA-1
Gene Sequence

>Msa0911220

ATGAGAAAGAATTTACCGTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACCGATTGGTCATAGGTTCAAATCCTACTTGGGGAGATTTTTTTCATTCCGGATTACATAATTCGGAAGGAAAAGTAAAGCGTTCGCTTGTTAATCATCAATTCTCCCGAGAGGCCACCATTACCGAGAGCAAACATAATAATGACGAGGAACGCATTTTTGCTATGCTACTTTGCTCTGCTGACACCAAAGGCCTCTGCCCTTCCATCCCTAGCTATTCAAGGGATGGGGGACAGAGGTTTTGGTTTTTTCATGTTGTCAAAGAGTTGAACAATCAAAATAGATGGCGATTGCCTGATCGAATTGATCAGGGGCAGAGAACCCATCGCTGTTTTGGCTGTGATACCGGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTACAGCTCCAGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTTCCCGTCGATGTGAGCTCTTGGGGAAGATCAGCCTGTTATCCCTAGATCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCCGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTACGCCCCATAGAAACTGTCTACCTGAGACTGTCCCTTGGTCTGTACTGGCACAAGGTGCAGGTAGTCCGCATCTTCACCGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCTAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACTGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTTCCCTGTCATCAGGTCACCAACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAA
Protein sequence

>Msa0911220

MRKNLPLFLSSSVVERSAVNRLVIGSNPTWGDFFHSGLHNSEGKVKRSLVNHQFSREATITESKHNNDEERIFAMLLCSADTKGLCPSIPSYSRDGGQRFWFFHVVKELNNQNRWRLPDRIDQGQRTHRCFGCDTGGSGEVGIGEHSSWGKGPLNALTPTPDMDRTVSRRSEPSSRTALMGEQPNPWNILQLQVAKSRHRGAKPSRRCELLGKISLLSLDQAPFCLCTRGPISVWPEETFARLRYLLGGLRPIETVYLRLSLGLYWHKVQVVRIFTDMSISPSLSPRQCLDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLNLPALGRRQPPYMVLRLCGDLCFW*