AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0166180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0166180 MtrunA17_Chr1g0180371 93.190 279 11 1 1 271 1 279 0.0 511
Msa0166180 MtrunA17_Chr1g0180331 60.456 263 91 5 13 265 14 273 1.05e-108 316
Msa0166180 MtrunA17_Chr7g0264911 61.215 214 73 3 67 270 1 214 1.71e-89 265
Msa0166180 MtrunA17_Chr4g0028711 50.813 246 108 3 28 264 25 266 2.55e-84 253
Msa0166180 MtrunA17_Chr4g0028741 46.970 264 122 6 16 266 13 271 4.21e-84 253
Msa0166180 MtrunA17_Chr7g0257091 47.059 272 124 7 11 271 5 267 5.91e-82 247
Msa0166180 MtrunA17_Chr4g0028721 51.131 221 95 3 34 245 5 221 1.71e-74 227
Msa0166180 MtrunA17_Chr1g0178591 39.382 259 133 6 21 265 15 263 4.86e-58 186
Msa0166180 MtrunA17_Chr4g0028731 40.948 232 86 2 33 264 4 184 6.66e-57 181
Msa0166180 MtrunA17_Chr1g0178601 37.594 266 147 5 14 265 3 263 2.06e-55 179
Msa0166180 MtrunA17_Chr1g0178541 35.669 157 84 4 124 266 25 178 9.17e-23 92.4
Msa0166180 MtrunA17_Chr1g0178561 49.091 55 28 0 87 141 8 62 3.45e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0166180 AT2G28210.1 51.698 265 114 5 14 268 14 274 1.61e-94 280
Msa0166180 AT1G08080.1 52.245 245 104 3 32 267 33 273 1.85e-90 269
Msa0166180 AT4G20990.1 46.415 265 124 5 14 267 8 265 6.51e-80 242
Msa0166180 AT1G08065.1 46.038 265 127 7 14 267 11 270 1.68e-75 231
Msa0166180 AT4G21000.1 45.205 219 102 4 10 228 19 219 5.44e-66 206
Msa0166180 AT5G04180.1 41.923 260 135 5 15 264 4 257 1.34e-62 198
Msa0166180 AT5G56330.1 43.388 242 99 5 32 270 133 339 3.50e-57 187
Msa0166180 AT5G56330.2 46.667 180 87 5 32 207 133 307 6.19e-47 159
Msa0166180 AT2G28210.2 51.773 141 63 2 14 149 14 154 8.86e-46 151
Msa0166180 AT3G52720.3 33.962 265 153 6 15 265 9 265 8.09e-45 153
Msa0166180 AT3G52720.4 33.962 265 153 6 15 265 9 265 8.09e-45 153
Msa0166180 AT3G52720.1 33.962 265 153 6 15 265 9 265 8.09e-45 153
Msa0166180 AT3G52720.2 33.333 228 138 5 15 236 9 228 3.53e-36 129

Find 84 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATTTCATTCCTTTCGTTT+TGG 0.214741 1_4:-47224460 None:intergenic
GTTGTATCTCTCTTCTATTC+AGG 0.261851 1_4:-47224429 None:intergenic
ATTGGTCTAATGTATAAAAT+TGG 0.268694 1_4:+47222289 Msa0166180:CDS
TACACAAAAGGTAGCAAAAT+AGG 0.312146 1_4:+47218709 Msa0166180:CDS
GTTGCTAGTATTAATAGATT+TGG 0.315573 1_4:-47218506 None:intergenic
CAAAATGCTAGAAATCTTAC+AGG 0.329408 1_4:-47224564 None:intergenic
TTGGCACCACCCTCACTCTA+TGG 0.334195 1_4:-47218813 None:intergenic
TTGGTGCTTCATGTTTGATT+TGG 0.346186 1_4:-47218462 None:intergenic
TCTAATATTGTAAAGTGAAT+GGG 0.372424 1_4:-47224672 None:intergenic
TCCTTGTTGTGCAAAGGATT+AGG 0.373045 1_4:-47218532 None:intergenic
AAGAGTAAGATAGCTGTTAT+TGG 0.374604 1_4:+47222271 Msa0166180:CDS
CAAAATAGGCCCCTCACATT+GGG 0.379419 1_4:+47218723 Msa0166180:CDS
AATAAATGATGCAGGTGAAA+TGG 0.381383 1_4:+47220860 Msa0166180:intron
TTTGATTTCCTTGTTCCTAT+AGG 0.381385 1_4:+47224537 Msa0166180:three_prime_UTR
TTCTAATATTGTAAAGTGAA+TGG 0.395434 1_4:-47224673 None:intergenic
GACAAACCTCCTGCCATTGA+TGG 0.396424 1_4:-47220965 None:intergenic
TAACGTTGGTATACAATGAA+TGG 0.400517 1_4:-47224601 None:intergenic
CTATGGCTTGACATATCAAT+TGG 0.400815 1_4:-47218796 None:intergenic
CTTCATGTTTGATTTGGACT+AGG 0.402638 1_4:-47218456 None:intergenic
GTGAGGGTGGTGCCAAAGTT+AGG 0.408994 1_4:+47218820 Msa0166180:CDS
ATGAAGTTGAAAGGAGCATT+GGG 0.412118 1_4:+47222468 Msa0166180:CDS
CAGTGCAAGGAGGGACAGTA+AGG 0.415316 1_4:-47222550 None:intergenic
CTTCTATTCAGGAGTTGAAC+AGG 0.418113 1_4:-47224418 None:intergenic
CATGAAAGTGCAAAAGTAAA+CGG 0.418487 1_4:+47222247 Msa0166180:CDS
CATGAATTTGATTACACAAA+AGG 0.418746 1_4:+47218697 Msa0166180:CDS
AGAAGAGAGATACAACTCTA+TGG 0.455820 1_4:+47224436 Msa0166180:CDS
CCACCCAACTTGATTTCTGA+AGG 0.465681 1_4:-47222500 None:intergenic
GATCCTTCAGAAATCAAGTT+GGG 0.471464 1_4:+47222497 Msa0166180:CDS
ACTGTCCCTCCTTGCACTGA+AGG 0.477863 1_4:+47222554 Msa0166180:CDS
AATCTTACAGGACTACCTAT+AGG 0.479291 1_4:-47224552 None:intergenic
AACGTTGGTATACAATGAAT+GGG 0.483977 1_4:-47224600 None:intergenic
CCTTCTGAACACACCATCAA+TGG 0.486540 1_4:+47220952 Msa0166180:CDS
CAAGTAGAAGATGATGAAAG+AGG 0.487662 1_4:-47218415 None:intergenic
GCAAAATAGGCCCCTCACAT+TGG 0.489393 1_4:+47218722 Msa0166180:CDS
ATGAAAGTGCAAAAGTAAAC+GGG 0.490283 1_4:+47222248 Msa0166180:CDS
GAATGGGCAACATGTAATGA+TGG 0.492565 1_4:+47218760 Msa0166180:CDS
AAGTGTTTCAAGAGGGCAGT+TGG 0.498514 1_4:+47222870 Msa0166180:CDS
TATATATAGAAAATAAATAG+TGG 0.498534 1_4:-47224483 None:intergenic
AATGAAGTTGAAAGGAGCAT+TGG 0.505433 1_4:+47222467 Msa0166180:CDS
GGGGTAAAATCAAGAAGGAA+TGG 0.508013 1_4:+47218743 Msa0166180:CDS
GGGTAAAATCAAGAAGGAAT+GGG 0.525371 1_4:+47218744 Msa0166180:CDS
GCTGGATCAATAAATATCAA+TGG 0.525902 1_4:+47220892 Msa0166180:CDS
AAATAGAGGTCATGATATTG+AGG 0.527354 1_4:+47218885 Msa0166180:CDS
CTATTGTCCTTGTTGTGCAA+AGG 0.529830 1_4:-47218538 None:intergenic
CCATTGATGGTGTGTTCAGA+AGG 0.543813 1_4:-47220952 None:intergenic
AAGAAGTACTACAGATACAT+AGG 0.545677 1_4:+47222524 Msa0166180:CDS
GTGAAATGGAAGGAAGATGC+TGG 0.545944 1_4:+47220874 Msa0166180:CDS
CATGTTTGATTTGGACTAGG+AGG 0.546355 1_4:-47218453 None:intergenic
ACCTTGCTGAGAACACGATC+TGG 0.547703 1_4:-47222316 None:intergenic
AAGTAGAAGATGATGAAAGA+GGG 0.548892 1_4:-47218414 None:intergenic
CTAGTATTAATAGATTTGGA+AGG 0.563282 1_4:-47218502 None:intergenic
AGGACAATAGCACAAGAAGT+TGG 0.564319 1_4:+47218551 Msa0166180:CDS
CTAATATTGTAAAGTGAATG+GGG 0.564517 1_4:-47224671 None:intergenic
TGATCCTTCAGAAATCAAGT+TGG 0.568562 1_4:+47222496 Msa0166180:CDS
CAAAGTTAGGAAAATTAAAG+AGG 0.570259 1_4:+47218833 Msa0166180:CDS
AATTATTGTACTTATATGTG+TGG 0.570582 1_4:-47224630 None:intergenic
AATGGGCAACATGTAATGAT+GGG 0.583902 1_4:+47218761 Msa0166180:CDS
TCCTAATCCTTTGCACAACA+AGG 0.587202 1_4:+47218531 Msa0166180:CDS
CAGGACTACCTATAGGAACA+AGG 0.588111 1_4:-47224545 None:intergenic
CTGAACACACCATCAATGGC+AGG 0.589619 1_4:+47220956 Msa0166180:CDS
CAAATGACACCTTCAGTGCA+AGG 0.595109 1_4:-47222563 None:intergenic
AATGATGCAGGTGAAATGGA+AGG 0.596654 1_4:+47220864 Msa0166180:intron
CATGGACCATGTGTAGCTCA+AGG 0.603832 1_4:-47222228 None:intergenic
ACCAGATCGTGTTCTCAGCA+AGG 0.606154 1_4:+47222315 Msa0166180:CDS
TTCAACTTCATTATCCACCA+TGG 0.609479 1_4:-47222456 None:intergenic
TGACACCTTCAGTGCAAGGA+GGG 0.610217 1_4:-47222559 None:intergenic
ACTCTATGGCCCAAAACGAA+AGG 0.610963 1_4:+47224450 Msa0166180:CDS
TGGTGGATAATGAAGTTGAA+AGG 0.612709 1_4:+47222459 Msa0166180:CDS
AGTGCAAGGAGGGACAGTAA+GGG 0.619780 1_4:-47222549 None:intergenic
CAGATAAGAAGTGTTTCAAG+AGG 0.624399 1_4:+47222862 Msa0166180:intron
TAATATTGTAAAGTGAATGG+GGG 0.624696 1_4:-47224670 None:intergenic
GTCAAGCCATAGAGTGAGGG+TGG 0.624857 1_4:+47218807 Msa0166180:CDS
ATATGTCAAGCCATAGAGTG+AGG 0.627999 1_4:+47218803 Msa0166180:CDS
ATGTGTGGTTCTAATAACGT+TGG 0.632659 1_4:-47224615 None:intergenic
ACATTGGGGTAAAATCAAGA+AGG 0.636121 1_4:+47218738 Msa0166180:CDS
TGAAGTTGAAAGGAGCATTG+GGG 0.638978 1_4:+47222469 Msa0166180:CDS
AGATAAGAAGTGTTTCAAGA+GGG 0.642367 1_4:+47222863 Msa0166180:intron
AAAATAGGCCCCTCACATTG+GGG 0.652089 1_4:+47218724 Msa0166180:CDS
CCTTCAGAAATCAAGTTGGG+TGG 0.652820 1_4:+47222500 Msa0166180:CDS
AATATTGTAAAGTGAATGGG+GGG 0.658187 1_4:-47224669 None:intergenic
TATGTCAAGCCATAGAGTGA+GGG 0.675192 1_4:+47218804 Msa0166180:CDS
AACACACCATCAATGGCAGG+AGG 0.695820 1_4:+47220959 Msa0166180:CDS
ATGACACCTTCAGTGCAAGG+AGG 0.714310 1_4:-47222560 None:intergenic
GTATGACCTTGAGCTACACA+TGG 0.714569 1_4:+47222222 Msa0166180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTTAACATCAAATTTT+TGG + chr1_4:47219151-47219170 Msa0166180:intron 10.0%
!! TCAATATATATTTATGTATT+TGG + chr1_4:47219991-47220010 Msa0166180:intron 10.0%
!!! TTTTTGTTTTGAAAAATAAA+TGG + chr1_4:47222083-47222102 Msa0166180:intron 10.0%
!!! AAATTTTAAATATTGCAAAT+GGG + chr1_4:47222127-47222146 Msa0166180:intron 10.0%
!!! AGTAATTTTTCTTTTTTTAA+AGG + chr1_4:47222922-47222941 Msa0166180:intron 10.0%
!!! GTAATTTTTCTTTTTTTAAA+GGG + chr1_4:47222923-47222942 Msa0166180:intron 10.0%
!!! AATAAACATTTATCTTTTAT+TGG - chr1_4:47223094-47223113 None:intergenic 10.0%
!! AAACAATTTATATATAGATA+GGG + chr1_4:47223158-47223177 Msa0166180:intron 10.0%
!!! ATAAACCTATATTTTTTAAA+AGG + chr1_4:47223634-47223653 Msa0166180:intron 10.0%
!! TATATATAGAAAATAAATAG+TGG - chr1_4:47224486-47224505 None:intergenic 10.0%
!! TCTATTGTTTAAATATTGTA+TGG + chr1_4:47219053-47219072 Msa0166180:intron 15.0%
!! TATATCTTAGTAGAATAATA+TGG - chr1_4:47219451-47219470 None:intergenic 15.0%
!!! GATATATTTTTATAAAGTGA+TGG + chr1_4:47219810-47219829 Msa0166180:intron 15.0%
!! TCCAAAAATTTCTTATAAAT+AGG + chr1_4:47220050-47220069 Msa0166180:intron 15.0%
!!! TCCTATTTATAAGAAATTTT+TGG - chr1_4:47220054-47220073 None:intergenic 15.0%
!!! TTATTTCTTCTTTTAAAACT+TGG - chr1_4:47220207-47220226 None:intergenic 15.0%
!! TCTATAAATCATAGTTAAAA+TGG - chr1_4:47220336-47220355 None:intergenic 15.0%
!! ATAGAATTAGAAATGAATAT+TGG + chr1_4:47220629-47220648 Msa0166180:intron 15.0%
!!! AAATTTTCACATTAAAAATC+AGG - chr1_4:47221018-47221037 None:intergenic 15.0%
!!! TATTTGTTAAAAAAAGTGTT+TGG + chr1_4:47221249-47221268 Msa0166180:intron 15.0%
!!! TTGCTATTGAAAAATTATAA+GGG - chr1_4:47221541-47221560 None:intergenic 15.0%
!!! TTTGCTATTGAAAAATTATA+AGG - chr1_4:47221542-47221561 None:intergenic 15.0%
!! TATACATTAGTTAAAAAGTA+TGG - chr1_4:47221658-47221677 None:intergenic 15.0%
!!! AACTTATTTTTTCAGAAAAA+TGG + chr1_4:47221890-47221909 Msa0166180:intron 15.0%
!!! CAAATTTTAAATATTGCAAA+TGG + chr1_4:47222126-47222145 Msa0166180:intron 15.0%
!! GGTATTAAAATAATATATGT+TGG - chr1_4:47222153-47222172 None:intergenic 15.0%
!!! CATATATTATTTTAATACCT+AGG + chr1_4:47222154-47222173 Msa0166180:intron 15.0%
!!! GAAATTAATTTTAAATTCCT+AGG - chr1_4:47222174-47222193 None:intergenic 15.0%
!!! TTTTCTTGATCTTAAATATT+AGG + chr1_4:47222200-47222219 Msa0166180:intron 15.0%
!!! AAATTTAATTTTAGTCATGA+TGG + chr1_4:47222670-47222689 Msa0166180:intron 15.0%
!! GAAACAATTTATATATAGAT+AGG + chr1_4:47223157-47223176 Msa0166180:intron 15.0%
!! AACAATTTATATATAGATAG+GGG + chr1_4:47223159-47223178 Msa0166180:intron 15.0%
!! AATAGTTAATAAGGATAATT+TGG - chr1_4:47223397-47223416 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG + chr1_4:47223396-47223415 Msa0166180:intron 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG + chr1_4:47223420-47223439 Msa0166180:intron 15.0%
!!! CATTTTGAAACAATTTTTTT+TGG + chr1_4:47223522-47223541 Msa0166180:intron 15.0%
!!! ATTAGCCTTTTAAAAAATAT+AGG - chr1_4:47223642-47223661 None:intergenic 15.0%
!!! TATATTTTTTAAAAGGCTAA+TGG + chr1_4:47223641-47223660 Msa0166180:intron 15.0%
!!! ATATTTTTTAAAAGGCTAAT+GGG + chr1_4:47223642-47223661 Msa0166180:intron 15.0%
!!! AATTATTACTTGCTTTTTTT+TGG + chr1_4:47224330-47224349 Msa0166180:intron 15.0%
!! CTTAATGAATGAGAAAAATA+AGG - chr1_4:47218387-47218406 None:intergenic 20.0%
!!! GGAATTTTTTGAGTATTTTT+TGG - chr1_4:47218484-47218503 None:intergenic 20.0%
!! TTGAAATACTCAAAGATTAA+TGG - chr1_4:47218610-47218629 None:intergenic 20.0%
!!! ATTTTTAATAGTAGCATTGT+GGG - chr1_4:47218869-47218888 None:intergenic 20.0%
!!! TATTTTTAATAGTAGCATTG+TGG - chr1_4:47218870-47218889 None:intergenic 20.0%
!! AATGCTACTATTAAAAATAG+AGG + chr1_4:47218871-47218890 Msa0166180:CDS 20.0%
!! CATTTCTATAAGATATATCT+GGG - chr1_4:47219131-47219150 None:intergenic 20.0%
!! TCATTTCTATAAGATATATC+TGG - chr1_4:47219132-47219151 None:intergenic 20.0%
!! AAAAAAAAAAAGTTAGAGAG+TGG + chr1_4:47219643-47219662 Msa0166180:intron 20.0%
!!! TTTTTATAAATAAGACCGAA+TGG - chr1_4:47219962-47219981 None:intergenic 20.0%
!! AATTAGAAATGAATATTGGT+AGG + chr1_4:47220633-47220652 Msa0166180:intron 20.0%
!! AAAATCTATGCATAATATCA+TGG + chr1_4:47221321-47221340 Msa0166180:intron 20.0%
!! TGCTATTGAAAAATTATAAG+GGG - chr1_4:47221540-47221559 None:intergenic 20.0%
!!! ATTAGACATGTATTTTGAAA+CGG - chr1_4:47221599-47221618 None:intergenic 20.0%
!!! TATTTTTTTCAACTACAATG+AGG + chr1_4:47221848-47221867 Msa0166180:intron 20.0%
!!! TCAGAAAAATGGATTTTTAT+AGG + chr1_4:47221901-47221920 Msa0166180:intron 20.0%
!!! ATAATTTTCACTGACATTTA+GGG - chr1_4:47222034-47222053 None:intergenic 20.0%
!!! AATAATTTTCACTGACATTT+AGG - chr1_4:47222035-47222054 None:intergenic 20.0%
!!! ATTGGTCTAATGTATAAAAT+TGG + chr1_4:47222289-47222308 Msa0166180:CDS 20.0%
!!! AGGTAACAATATTTTTTGTT+TGG + chr1_4:47222335-47222354 Msa0166180:intron 20.0%
!! CTAAATAATCAAATTTGCAA+CGG + chr1_4:47222408-47222427 Msa0166180:intron 20.0%
!! CATTTGGACTATTAATAAAA+AGG + chr1_4:47222580-47222599 Msa0166180:intron 20.0%
!! TGATCTTCAATTAAGAAAAT+CGG + chr1_4:47222703-47222722 Msa0166180:intron 20.0%
!! AAGAAAAATTACTTACATCA+TGG - chr1_4:47222915-47222934 None:intergenic 20.0%
!! AAGTTATTATACTTACATCA+TGG - chr1_4:47222950-47222969 None:intergenic 20.0%
!!! AGTCCATTTCTTTTTTATTT+TGG + chr1_4:47223028-47223047 Msa0166180:intron 20.0%
!! GATCCAAAATAAAAAAGAAA+TGG - chr1_4:47223034-47223053 None:intergenic 20.0%
!!! CTTAAAATAAAGCATTTGAT+TGG - chr1_4:47223269-47223288 None:intergenic 20.0%
!!! AATGCTTTATTTTAAGCATT+TGG + chr1_4:47223273-47223292 Msa0166180:intron 20.0%
!! AATGATTAAAAGAAAGAGAA+TGG + chr1_4:47223363-47223382 Msa0166180:intron 20.0%
!! AAACTAACCAATAGTTAATA+AGG - chr1_4:47223406-47223425 None:intergenic 20.0%
!!! TCAATTTTAAACAACTTTGA+GGG - chr1_4:47223905-47223924 None:intergenic 20.0%
!!! ATCAATTTTAAACAACTTTG+AGG - chr1_4:47223906-47223925 None:intergenic 20.0%
!! ATACACTTGTATTATATAAG+AGG - chr1_4:47223944-47223963 None:intergenic 20.0%
!!! ACAATCATTTTTAACAACTT+TGG - chr1_4:47223985-47224004 None:intergenic 20.0%
!! ACTCGTTTATTAAATAAGTT+AGG - chr1_4:47224117-47224136 None:intergenic 20.0%
!! ACTTATTTAATAAACGAGTT+AGG + chr1_4:47224118-47224137 Msa0166180:intron 20.0%
!! ATTAATAACATTGAGCAATT+TGG + chr1_4:47224262-47224281 Msa0166180:intron 20.0%
!! AATTATTGTACTTATATGTG+TGG - chr1_4:47224633-47224652 None:intergenic 20.0%
!! TCTAATATTGTAAAGTGAAT+GGG - chr1_4:47224675-47224694 None:intergenic 20.0%
!! TTCTAATATTGTAAAGTGAA+TGG - chr1_4:47224676-47224695 None:intergenic 20.0%
! TGAATGAGAAAAATAAGGAA+GGG - chr1_4:47218382-47218401 None:intergenic 25.0%
! ATGAATGAGAAAAATAAGGA+AGG - chr1_4:47218383-47218402 None:intergenic 25.0%
! CTAGTATTAATAGATTTGGA+AGG - chr1_4:47218505-47218524 None:intergenic 25.0%
! GTTGCTAGTATTAATAGATT+TGG - chr1_4:47218509-47218528 None:intergenic 25.0%
! CATGAATTTGATTACACAAA+AGG + chr1_4:47218697-47218716 Msa0166180:CDS 25.0%
!!! CTCTTTAATTTTCCTAACTT+TGG - chr1_4:47218835-47218854 None:intergenic 25.0%
! CAAAGTTAGGAAAATTAAAG+AGG + chr1_4:47218833-47218852 Msa0166180:CDS 25.0%
!! TTTTTAATAGTAGCATTGTG+GGG - chr1_4:47218868-47218887 None:intergenic 25.0%
!! GATGAAATGAATGATTTTCT+GGG - chr1_4:47218922-47218941 None:intergenic 25.0%
!! TGATGAAATGAATGATTTTC+TGG - chr1_4:47218923-47218942 None:intergenic 25.0%
! TTCAAACCAGAGATAATATA+CGG - chr1_4:47219106-47219125 None:intergenic 25.0%
! GATAATATATGAGATGATGT+TGG + chr1_4:47219480-47219499 Msa0166180:intron 25.0%
! ATTAGAATAGATAGTTGACT+TGG + chr1_4:47219616-47219635 Msa0166180:intron 25.0%
!!! TCAATAAAAGTTGATGTACT+TGG - chr1_4:47220030-47220049 None:intergenic 25.0%
! AAGTAATCTACTACTTCATA+TGG - chr1_4:47220077-47220096 None:intergenic 25.0%
! ATCGTTAACTAATAAGAGTA+CGG + chr1_4:47220114-47220133 Msa0166180:intron 25.0%
! TATTATGTATCTACTTGCAT+AGG + chr1_4:47220386-47220405 Msa0166180:intron 25.0%
! ATTATGTATCTACTTGCATA+GGG + chr1_4:47220387-47220406 Msa0166180:intron 25.0%
! GATTGAATATTAGAATGTGT+TGG - chr1_4:47220517-47220536 None:intergenic 25.0%
! CACATTCTAATATTCAATCT+AGG + chr1_4:47220518-47220537 Msa0166180:intron 25.0%
! ACTTAACATTAGGTTAATAC+TGG + chr1_4:47220658-47220677 Msa0166180:intron 25.0%
! CTCTTTATAATAAATGATGC+AGG + chr1_4:47220852-47220871 Msa0166180:intron 25.0%
! GGTGAAAAGATATGAATATT+TGG - chr1_4:47220997-47221016 None:intergenic 25.0%
!!! TTTTCCTTGTACACTTTTTT+TGG + chr1_4:47221074-47221093 Msa0166180:intron 25.0%
!! TGGAAATAATTTGTGTTTCT+CGG - chr1_4:47221191-47221210 None:intergenic 25.0%
!! AGGAATCATATTTTCATTCT+CGG - chr1_4:47221226-47221245 None:intergenic 25.0%
!!! ACTTTTTTTAACAAATAGCC+AGG - chr1_4:47221246-47221265 None:intergenic 25.0%
!! TTGTAACTTCTAATTTTCCT+AGG - chr1_4:47221291-47221310 None:intergenic 25.0%
! TGTAACTTCTATTATTCCTA+TGG - chr1_4:47221383-47221402 None:intergenic 25.0%
!!! TTATACCTATGTTTGTTATG+AGG - chr1_4:47221459-47221478 None:intergenic 25.0%
! GCTATTGAAAAATTATAAGG+GGG - chr1_4:47221539-47221558 None:intergenic 25.0%
! GCAAATTACAAAAAAGTAGA+CGG + chr1_4:47221557-47221576 Msa0166180:intron 25.0%
! TCCTAAAATGAAAAGCTATT+AGG + chr1_4:47221806-47221825 Msa0166180:intron 25.0%
!! TCCTAATAGCTTTTCATTTT+AGG - chr1_4:47221810-47221829 None:intergenic 25.0%
! GTCAAAATACATAAAAACCA+TGG + chr1_4:47222439-47222458 Msa0166180:CDS 25.0%
! AAAATACATAAAAACCATGG+TGG + chr1_4:47222442-47222461 Msa0166180:CDS 25.0%
! GATCTTCAATTAAGAAAATC+GGG + chr1_4:47222704-47222723 Msa0166180:intron 25.0%
! ATTCAGTGAATCAAAAAAAC+TGG - chr1_4:47222822-47222841 None:intergenic 25.0%
! AATTTATATATAGATAGGGG+TGG + chr1_4:47223162-47223181 Msa0166180:intron 25.0%
!!! GGTTTTAGTTTTTTTCAACT+AGG - chr1_4:47223229-47223248 None:intergenic 25.0%
!! ATTGTTATTGTCCAATAAGA+AGG + chr1_4:47223864-47223883 Msa0166180:intron 25.0%
!! TTGTTATTGTCCAATAAGAA+GGG + chr1_4:47223865-47223884 Msa0166180:intron 25.0%
!! CAATTTTAAACAACTTTGAG+GGG - chr1_4:47223904-47223923 None:intergenic 25.0%
! GACTTATAGAAAAGTTTACT+AGG - chr1_4:47224066-47224085 None:intergenic 25.0%
!!! TTAAGCTTTTTAAAAAGGTC+AGG - chr1_4:47224093-47224112 None:intergenic 25.0%
!!! TAGGCTTAAGCTTTTTAAAA+AGG - chr1_4:47224098-47224117 None:intergenic 25.0%
! TGTTATTAATGAATACTCCA+TGG - chr1_4:47224222-47224241 None:intergenic 25.0%
!!! TGGTTTTGGAAATGAAAATT+TGG + chr1_4:47224282-47224301 Msa0166180:intron 25.0%
! TACATATATATGTTTCAAGC+TGG - chr1_4:47224311-47224330 None:intergenic 25.0%
!!! TATTACTTGCTTTTTTTTGG+AGG + chr1_4:47224333-47224352 Msa0166180:intron 25.0%
!! TATTTCATTCCTTTCGTTTT+GGG - chr1_4:47224462-47224481 None:intergenic 25.0%
! TAATATTGTAAAGTGAATGG+GGG - chr1_4:47224673-47224692 None:intergenic 25.0%
! CTAATATTGTAAAGTGAATG+GGG - chr1_4:47224674-47224693 None:intergenic 25.0%
AAGTAGAAGATGATGAAAGA+GGG - chr1_4:47218417-47218436 None:intergenic 30.0%
ATCTATTTACATTTGTGCAG+AGG + chr1_4:47218669-47218688 Msa0166180:intron 30.0%
TACACAAAAGGTAGCAAAAT+AGG + chr1_4:47218709-47218728 Msa0166180:CDS 30.0%
AAATAGAGGTCATGATATTG+AGG + chr1_4:47218885-47218904 Msa0166180:CDS 30.0%
TCAAACCAGAGATAATATAC+GGG - chr1_4:47219105-47219124 None:intergenic 30.0%
!!! AATGTCATGGAAGTATTTTC+CGG - chr1_4:47219252-47219271 None:intergenic 30.0%
TGTTATGTGAATAGTGCATA+TGG - chr1_4:47219421-47219440 None:intergenic 30.0%
!!! TGACTAGATGAGTTTTGTTT+TGG + chr1_4:47219582-47219601 Msa0166180:intron 30.0%
! CTGTAAAAAAGTGTACCATT+CGG + chr1_4:47219944-47219963 Msa0166180:intron 30.0%
TTGGTAGGTAACTTAACATT+AGG + chr1_4:47220648-47220667 Msa0166180:intron 30.0%
AAAGATATGGTGTACTTTGA+AGG - chr1_4:47220705-47220724 None:intergenic 30.0%
AGCATTCACAACAAAAGATA+TGG - chr1_4:47220718-47220737 None:intergenic 30.0%
AACAACCAGATTTACACAAT+GGG - chr1_4:47220763-47220782 None:intergenic 30.0%
AATAAATGATGCAGGTGAAA+TGG + chr1_4:47220860-47220879 Msa0166180:intron 30.0%
GCTGGATCAATAAATATCAA+TGG + chr1_4:47220892-47220911 Msa0166180:CDS 30.0%
! TTTTTCTGCATCAATGTCAT+TGG + chr1_4:47220923-47220942 Msa0166180:CDS 30.0%
GAGAAACACAAATTATTTCC+AGG + chr1_4:47221190-47221209 Msa0166180:intron 30.0%
GAGAATGAAAATATGATTCC+TGG + chr1_4:47221225-47221244 Msa0166180:intron 30.0%
GCAAATAAATTGACATTCCT+AGG + chr1_4:47221271-47221290 Msa0166180:intron 30.0%
TCCTAGATATAAATATCCCT+CGG - chr1_4:47221421-47221440 None:intergenic 30.0%
AAGTTTAAGAATGACATTCC+CGG - chr1_4:47221506-47221525 None:intergenic 30.0%
! CATGAAAGTGCAAAAGTAAA+CGG + chr1_4:47222247-47222266 Msa0166180:CDS 30.0%
! ATGAAAGTGCAAAAGTAAAC+GGG + chr1_4:47222248-47222267 Msa0166180:CDS 30.0%
AAGAGTAAGATAGCTGTTAT+TGG + chr1_4:47222271-47222290 Msa0166180:CDS 30.0%
!! AAGAAGTACTACAGATACAT+AGG + chr1_4:47222524-47222543 Msa0166180:CDS 30.0%
TCCCTCTGATCTTAAATAAT+AGG + chr1_4:47222630-47222649 Msa0166180:intron 30.0%
! CCCTATTATTTAAGATCAGA+GGG - chr1_4:47222634-47222653 None:intergenic 30.0%
CCCTCTGATCTTAAATAATA+GGG + chr1_4:47222631-47222650 Msa0166180:intron 30.0%
! ACCCTATTATTTAAGATCAG+AGG - chr1_4:47222635-47222654 None:intergenic 30.0%
!! AGATAAGAAGTGTTTCAAGA+GGG + chr1_4:47222863-47222882 Msa0166180:intron 30.0%
TGACCTATTTAATCAAAACC+CGG - chr1_4:47223204-47223223 None:intergenic 30.0%
! AAAGCATTTGATTGGCTAAT+AGG - chr1_4:47223261-47223280 None:intergenic 30.0%
!!! GACACTCATTTTGAAATAGA+TGG - chr1_4:47223310-47223329 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG + chr1_4:47223315-47223334 Msa0166180:intron 30.0%
!!! CTAGCACATTTATTTTGTAG+AGG + chr1_4:47223769-47223788 Msa0166180:intron 30.0%
!! AACTTTGGTGTATTTTGTAG+AGG - chr1_4:47223970-47223989 None:intergenic 30.0%
TATATAATTACACGCCTGAT+AGG + chr1_4:47224040-47224059 Msa0166180:intron 30.0%
!! AACATTGAGCAATTTGGTTT+TGG + chr1_4:47224268-47224287 Msa0166180:intron 30.0%
! CTATTTCATTCCTTTCGTTT+TGG - chr1_4:47224463-47224482 None:intergenic 30.0%
! TTTGATTTCCTTGTTCCTAT+AGG + chr1_4:47224537-47224556 Msa0166180:three_prime_UTR 30.0%
CAAAATGCTAGAAATCTTAC+AGG - chr1_4:47224567-47224586 None:intergenic 30.0%
AACGTTGGTATACAATGAAT+GGG - chr1_4:47224603-47224622 None:intergenic 30.0%
TAACGTTGGTATACAATGAA+TGG - chr1_4:47224604-47224623 None:intergenic 30.0%
AATATTGTAAAGTGAATGGG+GGG - chr1_4:47224672-47224691 None:intergenic 30.0%
CAAGTAGAAGATGATGAAAG+AGG - chr1_4:47218418-47218437 None:intergenic 35.0%
!! CTTCATGTTTGATTTGGACT+AGG - chr1_4:47218459-47218478 None:intergenic 35.0%
! TTGGTGCTTCATGTTTGATT+TGG - chr1_4:47218465-47218484 None:intergenic 35.0%
! TTGATTTTACCCCAATGTGA+GGG - chr1_4:47218736-47218755 None:intergenic 35.0%
ACATTGGGGTAAAATCAAGA+AGG + chr1_4:47218738-47218757 Msa0166180:CDS 35.0%
GGGTAAAATCAAGAAGGAAT+GGG + chr1_4:47218744-47218763 Msa0166180:CDS 35.0%
AATGGGCAACATGTAATGAT+GGG + chr1_4:47218761-47218780 Msa0166180:CDS 35.0%
CTATGGCTTGACATATCAAT+TGG - chr1_4:47218799-47218818 None:intergenic 35.0%
GAAAACCCGTATATTATCTC+TGG + chr1_4:47219097-47219116 Msa0166180:intron 35.0%
AATACTTCCATGACATTGCT+TGG + chr1_4:47219255-47219274 Msa0166180:intron 35.0%
ATACTTCCATGACATTGCTT+GGG + chr1_4:47219256-47219275 Msa0166180:intron 35.0%
TATGTGAATAGTGCATATGG+TGG - chr1_4:47219418-47219437 None:intergenic 35.0%
TAAAAACGCACACAAACAAG+TGG + chr1_4:47220250-47220269 Msa0166180:intron 35.0%
TTAGCCAAACAACATAACTG+AGG - chr1_4:47220293-47220312 None:intergenic 35.0%
GTTGTTACAGTCTAGTAGTT+TGG - chr1_4:47220568-47220587 None:intergenic 35.0%
!! CTTTTGTTGTGAATGCTCTT+AGG + chr1_4:47220721-47220740 Msa0166180:intron 35.0%
TCTTAGGTGAATTGTTACGT+AGG + chr1_4:47220737-47220756 Msa0166180:intron 35.0%
CAACAACCAGATTTACACAA+TGG - chr1_4:47220764-47220783 None:intergenic 35.0%
CAGATGAATATTACAGTAGC+TGG + chr1_4:47220800-47220819 Msa0166180:intron 35.0%
!!! TCCTTGTACACTTTTTTTGG+TGG + chr1_4:47221077-47221096 Msa0166180:intron 35.0%
! ACCACCAAAAAAAGTGTACA+AGG - chr1_4:47221081-47221100 None:intergenic 35.0%
!! TGGTGGTGTCTAATATCTTT+TGG + chr1_4:47221094-47221113 Msa0166180:intron 35.0%
! TGGTGTCTAATATCTTTTGG+TGG + chr1_4:47221097-47221116 Msa0166180:intron 35.0%
ATTCTCGGATAAGTTATTCC+TGG - chr1_4:47221211-47221230 None:intergenic 35.0%
ACATTCCCACTTTCTTACAT+GGG + chr1_4:47221350-47221369 Msa0166180:intron 35.0%
TTACTCCCATGTAAGAAAGT+GGG - chr1_4:47221358-47221377 None:intergenic 35.0%
TTTACTCCCATGTAAGAAAG+TGG - chr1_4:47221359-47221378 None:intergenic 35.0%
TTACATGGGAGTAAATCCAT+AGG + chr1_4:47221364-47221383 Msa0166180:intron 35.0%
ATGAAGTTACTTCATTCCGA+GGG + chr1_4:47221402-47221421 Msa0166180:intron 35.0%
TCCGAGGGATATTTATATCT+AGG + chr1_4:47221417-47221436 Msa0166180:intron 35.0%
CTCAACCTCATAACAAACAT+AGG + chr1_4:47221451-47221470 Msa0166180:intron 35.0%
!!! GACATGTATTTTGAAACGGA+GGG - chr1_4:47221595-47221614 None:intergenic 35.0%
!!! AGACATGTATTTTGAAACGG+AGG - chr1_4:47221596-47221615 None:intergenic 35.0%
!! CGTTTACTTTTGCACTTTCA+TGG - chr1_4:47222249-47222268 None:intergenic 35.0%
TTCAACTTCATTATCCACCA+TGG - chr1_4:47222459-47222478 None:intergenic 35.0%
! TGGTGGATAATGAAGTTGAA+AGG + chr1_4:47222459-47222478 Msa0166180:CDS 35.0%
! AATGAAGTTGAAAGGAGCAT+TGG + chr1_4:47222467-47222486 Msa0166180:CDS 35.0%
!! ATGAAGTTGAAAGGAGCATT+GGG + chr1_4:47222468-47222487 Msa0166180:CDS 35.0%
TGATCCTTCAGAAATCAAGT+TGG + chr1_4:47222496-47222515 Msa0166180:CDS 35.0%
GATCCTTCAGAAATCAAGTT+GGG + chr1_4:47222497-47222516 Msa0166180:CDS 35.0%
GTATATAACTAACGTGCAGA+CGG - chr1_4:47222749-47222768 None:intergenic 35.0%
!! CAGATAAGAAGTGTTTCAAG+AGG + chr1_4:47222862-47222881 Msa0166180:intron 35.0%
TATATAGATAGGGGTGGAAT+AGG + chr1_4:47223168-47223187 Msa0166180:intron 35.0%
!!! GGGTTTTGATTAAATAGGTC+AGG + chr1_4:47223203-47223222 Msa0166180:intron 35.0%
AGTAGTGTGCTGAGTATTAA+TGG + chr1_4:47223444-47223463 Msa0166180:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr1_4:47223548-47223567 Msa0166180:intron 35.0%
ACTAATAAAGTGGGGGAAAA+TGG - chr1_4:47223696-47223715 None:intergenic 35.0%
AACGCACACACTAATAAAGT+GGG - chr1_4:47223705-47223724 None:intergenic 35.0%
AAACGCACACACTAATAAAG+TGG - chr1_4:47223706-47223725 None:intergenic 35.0%
!!! CCTTTTTTCTCCCTTCTTAT+TGG - chr1_4:47223878-47223897 None:intergenic 35.0%
CCAATAAGAAGGGAGAAAAA+AGG + chr1_4:47223875-47223894 Msa0166180:intron 35.0%
AAAAGTTTACTAGGCCTATC+AGG - chr1_4:47224057-47224076 None:intergenic 35.0%
CTATATATAGAGGTCGGAAT+AGG - chr1_4:47224196-47224215 None:intergenic 35.0%
TGGTCTCTATATATAGAGGT+CGG - chr1_4:47224202-47224221 None:intergenic 35.0%
ACCTCTATATATAGAGACCA+TGG + chr1_4:47224202-47224221 Msa0166180:intron 35.0%
TCCATGGTCTCTATATATAG+AGG - chr1_4:47224206-47224225 None:intergenic 35.0%
CTTGTGAACCACTCTATATA+TGG + chr1_4:47224371-47224390 Msa0166180:intron 35.0%
GTTGTATCTCTCTTCTATTC+AGG - chr1_4:47224432-47224451 None:intergenic 35.0%
AGAAGAGAGATACAACTCTA+TGG + chr1_4:47224436-47224455 Msa0166180:CDS 35.0%
AATCTTACAGGACTACCTAT+AGG - chr1_4:47224555-47224574 None:intergenic 35.0%
!! ATGTGTGGTTCTAATAACGT+TGG - chr1_4:47224618-47224637 None:intergenic 35.0%
!! CATGTTTGATTTGGACTAGG+AGG - chr1_4:47218456-47218475 None:intergenic 40.0%
TCCTAATCCTTTGCACAACA+AGG + chr1_4:47218531-47218550 Msa0166180:CDS 40.0%
! TCCTTGTTGTGCAAAGGATT+AGG - chr1_4:47218535-47218554 None:intergenic 40.0%
! CTATTGTCCTTGTTGTGCAA+AGG - chr1_4:47218541-47218560 None:intergenic 40.0%
AGGACAATAGCACAAGAAGT+TGG + chr1_4:47218551-47218570 Msa0166180:CDS 40.0%
! TGATTTTACCCCAATGTGAG+GGG - chr1_4:47218735-47218754 None:intergenic 40.0%
! CTTGATTTTACCCCAATGTG+AGG - chr1_4:47218737-47218756 None:intergenic 40.0%
GGGGTAAAATCAAGAAGGAA+TGG + chr1_4:47218743-47218762 Msa0166180:CDS 40.0%
GAATGGGCAACATGTAATGA+TGG + chr1_4:47218760-47218779 Msa0166180:CDS 40.0%
ATATGTCAAGCCATAGAGTG+AGG + chr1_4:47218803-47218822 Msa0166180:CDS 40.0%
TATGTCAAGCCATAGAGTGA+GGG + chr1_4:47218804-47218823 Msa0166180:CDS 40.0%
AAGTTGACAATGTTCCGTTC+CGG + chr1_4:47219230-47219249 Msa0166180:intron 40.0%
!!! CATGGAAGTATTTTCCGGAA+CGG - chr1_4:47219247-47219266 None:intergenic 40.0%
!! TTGTGTGTCATTGGTGTCAT+TGG - chr1_4:47219370-47219389 None:intergenic 40.0%
GTGTCATAGTTGTGTGTCAT+TGG - chr1_4:47219379-47219398 None:intergenic 40.0%
ACACAACTATGACACCAAAG+TGG + chr1_4:47219384-47219403 Msa0166180:intron 40.0%
! GAATAGTGCATATGGTGGAA+CGG - chr1_4:47219413-47219432 None:intergenic 40.0%
TGCTAGCTGCCAACTATTAA+GGG - chr1_4:47219670-47219689 None:intergenic 40.0%
TTGCTAGCTGCCAACTATTA+AGG - chr1_4:47219671-47219690 None:intergenic 40.0%
CGTTACAAAAACCACCGATA+GGG - chr1_4:47219714-47219733 None:intergenic 40.0%
ACGTTACAAAAACCACCGAT+AGG - chr1_4:47219715-47219734 None:intergenic 40.0%
ACACAAACAAGTGGATGAGT+GGG + chr1_4:47220259-47220278 Msa0166180:intron 40.0%
TGAGCCTCAGTTATGTTGTT+TGG + chr1_4:47220286-47220305 Msa0166180:intron 40.0%
ACTACTAGACTGTAACAACG+AGG + chr1_4:47220569-47220588 Msa0166180:intron 40.0%
AATGATGCAGGTGAAATGGA+AGG + chr1_4:47220864-47220883 Msa0166180:intron 40.0%
CACATTCCCACTTTCTTACA+TGG + chr1_4:47221349-47221368 Msa0166180:intron 40.0%
CATGAAGTTACTTCATTCCG+AGG + chr1_4:47221401-47221420 Msa0166180:intron 40.0%
ATTCCCTAGCCATGTATTTC+CGG + chr1_4:47221484-47221503 Msa0166180:intron 40.0%
ATGACATTCCCGGAAATACA+TGG - chr1_4:47221496-47221515 None:intergenic 40.0%
!! TGAAGTTGAAAGGAGCATTG+GGG + chr1_4:47222469-47222488 Msa0166180:CDS 40.0%
!!! GAGCCGGGTTTTGATTAAAT+AGG + chr1_4:47223198-47223217 Msa0166180:intron 40.0%
TTGGCTAATAGGTCAGACTT+AGG - chr1_4:47223250-47223269 None:intergenic 40.0%
AGTGTGCTGAGTATTAATGG+AGG + chr1_4:47223447-47223466 Msa0166180:intron 40.0%
GTGTGCTGAGTATTAATGGA+GGG + chr1_4:47223448-47223467 Msa0166180:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr1_4:47223552-47223571 Msa0166180:intron 40.0%
ACGCACACACTAATAAAGTG+GGG - chr1_4:47223704-47223723 None:intergenic 40.0%
CTTCTATTCAGGAGTTGAAC+AGG - chr1_4:47224421-47224440 None:intergenic 40.0%
CAAAATAGGCCCCTCACATT+GGG + chr1_4:47218723-47218742 Msa0166180:CDS 45.0%
AAAATAGGCCCCTCACATTG+GGG + chr1_4:47218724-47218743 Msa0166180:CDS 45.0%
CACCCATCAACACACATCAA+CGG - chr1_4:47219302-47219321 None:intergenic 45.0%
! TTGATGTGTGTTGATGGGTG+TGG + chr1_4:47219302-47219321 Msa0166180:intron 45.0%
! TGATGTGTGTTGATGGGTGT+GGG + chr1_4:47219303-47219322 Msa0166180:intron 45.0%
GTATGATGTGTGTGTGTGTG+TGG + chr1_4:47219333-47219352 Msa0166180:intron 45.0%
GAGAGTGGACCCTTAATAGT+TGG + chr1_4:47219658-47219677 Msa0166180:intron 45.0%
CTTTGTCCCTAACTCCCTAT+CGG + chr1_4:47219697-47219716 Msa0166180:intron 45.0%
AAACCACCGATAGGGAGTTA+GGG - chr1_4:47219706-47219725 None:intergenic 45.0%
AAAACCACCGATAGGGAGTT+AGG - chr1_4:47219707-47219726 None:intergenic 45.0%
! GGTGGTTTTTGTAACGTGTG+TGG + chr1_4:47219718-47219737 Msa0166180:intron 45.0%
CACACAAACAAGTGGATGAG+TGG + chr1_4:47220258-47220277 Msa0166180:intron 45.0%
GTAGGCCCATTGTGTAAATC+TGG + chr1_4:47220755-47220774 Msa0166180:intron 45.0%
GTGAAATGGAAGGAAGATGC+TGG + chr1_4:47220874-47220893 Msa0166180:CDS 45.0%
!! CCATTGATGGTGTGTTCAGA+AGG - chr1_4:47220955-47220974 None:intergenic 45.0%
CCTTCTGAACACACCATCAA+TGG + chr1_4:47220952-47220971 Msa0166180:CDS 45.0%
TTCCCTAGCCATGTATTTCC+GGG + chr1_4:47221485-47221504 Msa0166180:intron 45.0%
TTCCCGGAAATACATGGCTA+GGG - chr1_4:47221490-47221509 None:intergenic 45.0%
ATTCCCGGAAATACATGGCT+AGG - chr1_4:47221491-47221510 None:intergenic 45.0%
GTATGACCTTGAGCTACACA+TGG + chr1_4:47222222-47222241 Msa0166180:CDS 45.0%
CCACCCAACTTGATTTCTGA+AGG - chr1_4:47222503-47222522 None:intergenic 45.0%
!! CCTTCAGAAATCAAGTTGGG+TGG + chr1_4:47222500-47222519 Msa0166180:CDS 45.0%
CAAATGACACCTTCAGTGCA+AGG - chr1_4:47222566-47222585 None:intergenic 45.0%
!! CTTGCACTGAAGGTGTCATT+TGG + chr1_4:47222564-47222583 Msa0166180:intron 45.0%
AAGTGTTTCAAGAGGGCAGT+TGG + chr1_4:47222870-47222889 Msa0166180:CDS 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr1_4:47223551-47223570 Msa0166180:intron 45.0%
CGCACACACTAATAAAGTGG+GGG - chr1_4:47223703-47223722 None:intergenic 45.0%
TTCGTCAAGGATCTATGACC+CGG - chr1_4:47224165-47224184 None:intergenic 45.0%
ATAGGTCAGACTGTTCGTCA+AGG - chr1_4:47224178-47224197 None:intergenic 45.0%
GCATGCTGCCATATATAGAG+TGG - chr1_4:47224382-47224401 None:intergenic 45.0%
ACTCTATGGCCCAAAACGAA+AGG + chr1_4:47224450-47224469 Msa0166180:CDS 45.0%
CAGGACTACCTATAGGAACA+AGG - chr1_4:47224548-47224567 None:intergenic 45.0%
!! ATAAAATATACAATAAAATA+CGG + chr1_4:47220430-47220449 Msa0166180:intron 5.0%
!!! AATTATTTTTATTTTTCTAT+TGG + chr1_4:47220463-47220482 Msa0166180:intron 5.0%
!!! AAAATATTTTATCAAATAAA+AGG + chr1_4:47221739-47221758 Msa0166180:intron 5.0%
!!! AAAATAAATTTTATGTTAAA+AGG - chr1_4:47221990-47222009 None:intergenic 5.0%
!!! TTATTAACTTTTTTATAAAT+AGG - chr1_4:47223618-47223637 None:intergenic 5.0%
GCAAAATAGGCCCCTCACAT+TGG + chr1_4:47218722-47218741 Msa0166180:CDS 50.0%
ATGGCACCCAAGCAATGTCA+TGG - chr1_4:47219265-47219284 None:intergenic 50.0%
! TGACATTGCTTGGGTGCCAT+TGG + chr1_4:47219265-47219284 Msa0166180:intron 50.0%
ATCAACACACATCAACGGCC+AGG - chr1_4:47219297-47219316 None:intergenic 50.0%
TGGCCGTTGATGTGTGTTGA+TGG + chr1_4:47219296-47219315 Msa0166180:intron 50.0%
! GGCCGTTGATGTGTGTTGAT+GGG + chr1_4:47219297-47219316 Msa0166180:intron 50.0%
! GATGTGTGTTGATGGGTGTG+GGG + chr1_4:47219304-47219323 Msa0166180:intron 50.0%
TGATGTGTGTGTGTGTGTGG+TGG + chr1_4:47219336-47219355 Msa0166180:intron 50.0%
CTGAACACACCATCAATGGC+AGG + chr1_4:47220956-47220975 Msa0166180:CDS 50.0%
AACACACCATCAATGGCAGG+AGG + chr1_4:47220959-47220978 Msa0166180:CDS 50.0%
GACAAACCTCCTGCCATTGA+TGG - chr1_4:47220968-47220987 None:intergenic 50.0%
CATGGACCATGTGTAGCTCA+AGG - chr1_4:47222231-47222250 None:intergenic 50.0%
ACCAGATCGTGTTCTCAGCA+AGG + chr1_4:47222315-47222334 Msa0166180:CDS 50.0%
ACCTTGCTGAGAACACGATC+TGG - chr1_4:47222319-47222338 None:intergenic 50.0%
AGTGCAAGGAGGGACAGTAA+GGG - chr1_4:47222552-47222571 None:intergenic 50.0%
TGACACCTTCAGTGCAAGGA+GGG - chr1_4:47222562-47222581 None:intergenic 50.0%
ATGACACCTTCAGTGCAAGG+AGG - chr1_4:47222563-47222582 None:intergenic 50.0%
TAGATAGGGGTGGAATAGGC+CGG + chr1_4:47223172-47223191 Msa0166180:intron 50.0%
GGCCTACTTAAAGTTCGGCT+CGG - chr1_4:47224144-47224163 None:intergenic 50.0%
GAGCCGAACTTTAAGTAGGC+CGG + chr1_4:47224143-47224162 Msa0166180:intron 50.0%
AGCCGAACTTTAAGTAGGCC+GGG + chr1_4:47224144-47224163 Msa0166180:intron 50.0%
GACCCGGCCTACTTAAAGTT+CGG - chr1_4:47224149-47224168 None:intergenic 50.0%
GTCAAGCCATAGAGTGAGGG+TGG + chr1_4:47218807-47218826 Msa0166180:CDS 55.0%
TTGGCACCACCCTCACTCTA+TGG - chr1_4:47218816-47218835 None:intergenic 55.0%
! GTGAGGGTGGTGCCAAAGTT+AGG + chr1_4:47218820-47218839 Msa0166180:CDS 55.0%
AACGGCCAGGATTGCACCAA+TGG - chr1_4:47219284-47219303 None:intergenic 55.0%
! TGGTGGAACGGACTCCACTT+TGG - chr1_4:47219401-47219420 None:intergenic 55.0%
TGTCCCTAACTCCCTATCGG+TGG + chr1_4:47219700-47219719 Msa0166180:intron 55.0%
CAGTGCAAGGAGGGACAGTA+AGG - chr1_4:47222553-47222572 None:intergenic 55.0%
ACTGTCCCTCCTTGCACTGA+AGG + chr1_4:47222554-47222573 Msa0166180:CDS 55.0%
ACTAACGTGCAGACGGACAC+TGG - chr1_4:47222742-47222761 None:intergenic 55.0%
AGATAGGGGTGGAATAGGCC+GGG + chr1_4:47223173-47223192 Msa0166180:intron 55.0%
! AATCAAAACCCGGCTCGACC+CGG - chr1_4:47223194-47223213 None:intergenic 55.0%
GGCCGAGCCGAACTTTAAGT+AGG + chr1_4:47224139-47224158 Msa0166180:intron 55.0%
!! GGGTGCCATTGGTGCAATCC+TGG + chr1_4:47219276-47219295 Msa0166180:intron 60.0%
TGGAATAGGCCGGGTCGAGC+CGG + chr1_4:47223182-47223201 Msa0166180:intron 65.0%
GGAATAGGCCGGGTCGAGCC+GGG + chr1_4:47223183-47223202 Msa0166180:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 47218373 47224706 47218373 ID=Msa0166180;Name=Msa0166180
chr1_4 mRNA 47218373 47224706 47218373 ID=Msa0166180-mRNA-1;Parent=Msa0166180;Name=Msa0166180-mRNA-1;_AED=0.27;_eAED=0.27;_QI=100|0.83|0.85|1|0.66|0.71|7|229|271
chr1_4 exon 47218373 47218572 47218373 ID=Msa0166180-mRNA-1:exon:13670;Parent=Msa0166180-mRNA-1
chr1_4 exon 47218689 47218906 47218689 ID=Msa0166180-mRNA-1:exon:13671;Parent=Msa0166180-mRNA-1
chr1_4 exon 47220874 47220980 47220874 ID=Msa0166180-mRNA-1:exon:13672;Parent=Msa0166180-mRNA-1
chr1_4 exon 47222222 47222336 47222222 ID=Msa0166180-mRNA-1:exon:13673;Parent=Msa0166180-mRNA-1
chr1_4 exon 47222437 47222577 47222437 ID=Msa0166180-mRNA-1:exon:13674;Parent=Msa0166180-mRNA-1
chr1_4 exon 47222865 47222918 47222865 ID=Msa0166180-mRNA-1:exon:13675;Parent=Msa0166180-mRNA-1
chr1_4 exon 47224397 47224706 47224397 ID=Msa0166180-mRNA-1:exon:13676;Parent=Msa0166180-mRNA-1
chr1_4 five_prime_UTR 47218373 47218472 47218373 ID=Msa0166180-mRNA-1:five_prime_utr;Parent=Msa0166180-mRNA-1
chr1_4 CDS 47218473 47218572 47218473 ID=Msa0166180-mRNA-1:cds;Parent=Msa0166180-mRNA-1
chr1_4 CDS 47218689 47218906 47218689 ID=Msa0166180-mRNA-1:cds;Parent=Msa0166180-mRNA-1
chr1_4 CDS 47220874 47220980 47220874 ID=Msa0166180-mRNA-1:cds;Parent=Msa0166180-mRNA-1
chr1_4 CDS 47222222 47222336 47222222 ID=Msa0166180-mRNA-1:cds;Parent=Msa0166180-mRNA-1
chr1_4 CDS 47222437 47222577 47222437 ID=Msa0166180-mRNA-1:cds;Parent=Msa0166180-mRNA-1
chr1_4 CDS 47222865 47222918 47222865 ID=Msa0166180-mRNA-1:cds;Parent=Msa0166180-mRNA-1
chr1_4 CDS 47224397 47224477 47224397 ID=Msa0166180-mRNA-1:cds;Parent=Msa0166180-mRNA-1
chr1_4 three_prime_UTR 47224478 47224706 47224478 ID=Msa0166180-mRNA-1:three_prime_utr;Parent=Msa0166180-mRNA-1
Gene Sequence

>Msa0166180

ATGAAGCACCAAAAAATACTCAAAAAATTCCTTCCAAATCTATTAATACTAGCAACTATCCTAATCCTTTGCACAACAAGGACAATAGCACAAGAAGTTGAGGATGAGCATGAATTTGATTACACAAAAGGTAGCAAAATAGGCCCCTCACATTGGGGTAAAATCAAGAAGGAATGGGCAACATGTAATGATGGGAAAATGCAATCTCCAATTGATATGTCAAGCCATAGAGTGAGGGTGGTGCCAAAGTTAGGAAAATTAAAGAGGCACTATAAGCCCCACAATGCTACTATTAAAAATAGAGGTCATGATATTGAGGTGAAATGGAAGGAAGATGCTGGATCAATAAATATCAATGGTACAGAGTTTTTTCTGCATCAATGTCATTGGCACGCACCTTCTGAACACACCATCAATGGCAGGAGGTATGACCTTGAGCTACACATGGTCCATGAAAGTGCAAAAGTAAACGGGAAGAGTAAGATAGCTGTTATTGGTCTAATGTATAAAATTGGTCGACCAGATCGTGTTCTCAGCAAGTTGTCAAAATACATAAAAACCATGGTGGATAATGAAGTTGAAAGGAGCATTGGGGTGTTTGATCCTTCAGAAATCAAGTTGGGTGGCAAGAAGTACTACAGATACATAGGCTCCCTTACTGTCCCTCCTTGCACTGAAGGTATAAGAAGTGTTTCAAGAGGGCAGTTGGAGTTACTAAGAGAAGCTGTCCATGATCATGCAGAGAAGAATGCAAGACCTGTTCAACTCCTGAATAGAAGAGAGATACAACTCTATGGCCCAAAACGAAAGGAATGA

Protein sequence

>Msa0166180

MKHQKILKKFLPNLLILATILILCTTRTIAQEVEDEHEFDYTKGSKIGPSHWGKIKKEWATCNDGKMQSPIDMSSHRVRVVPKLGKLKRHYKPHNATIKNRGHDIEVKWKEDAGSININGTEFFLHQCHWHAPSEHTINGRRYDLELHMVHESAKVNGKSKIAVIGLMYKIGRPDRVLSKLSKYIKTMVDNEVERSIGVFDPSEIKLGGKKYYRYIGSLTVPPCTEGIRSVSRGQLELLREAVHDHAEKNARPVQLLNRREIQLYGPKRKE*