AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0078160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078160 MtrunA17_Chr1g0188361 90.909 165 1 1 1 151 226 390 7.59e-103 299
Msa0078160 MtrunA17_Chr5g0423381 29.496 139 79 3 17 141 197 330 2.34e-16 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078160 AT5G38520.1 66.667 165 41 1 1 151 195 359 1.15e-66 206
Msa0078160 AT5G38520.2 66.667 165 41 1 1 151 207 371 1.21e-66 207
Msa0078160 AT5G19850.1 27.338 139 82 3 17 141 216 349 4.69e-13 65.5

Find 78 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTCTTGATACAACGTATT+TGG 0.096787 1_2:-55507054 None:intergenic
GCTATTGATCTTCTTGGTTT+TGG 0.163333 1_2:+55505480 Msa0078160:five_prime_UTR
TGATGCAAACCTTGATATTT+AGG 0.175807 1_2:-55505696 None:intergenic
GTTTATGCTATTGATCTTCT+TGG 0.221335 1_2:+55505474 Msa0078160:five_prime_UTR
ACAGTTGATCTTGGATTTCT+TGG 0.227874 1_2:+55505811 Msa0078160:intron
CACCAATTACAAACTATAAA+AGG 0.236377 1_2:-55506856 None:intergenic
TGTCTCATTGCTGCTGCTTC+AGG 0.241897 1_2:+55505890 Msa0078160:five_prime_UTR
TTTAATGATGTCGAACTAAA+AGG 0.250680 1_2:-55505570 None:intergenic
TCTCCCCATAAAAGTAAAAT+AGG 0.274171 1_2:-55506625 None:intergenic
GCATTTGTATCAATTGTAAC+AGG 0.286676 1_2:+55506556 Msa0078160:CDS
TTGTAGTTTGGACTGCAAAT+TGG 0.298629 1_2:-55505602 None:intergenic
CTTCTTGATACAACGTATTT+GGG 0.312055 1_2:-55507053 None:intergenic
AAGGTTACGTTCAGAGTTCT+TGG 0.313499 1_2:+55506984 Msa0078160:three_prime_UTR
AATTGATACAAATGCATCTA+AGG 0.330008 1_2:-55506548 None:intergenic
TTGCAGAAGCAATTCCCTTT+TGG 0.333173 1_2:-55506144 None:intergenic
ATTTACACCACCATGTCTAT+TGG 0.339060 1_2:+55506953 Msa0078160:three_prime_UTR
ACAAAGCAATTGTTGATGAT+TGG 0.341853 1_2:+55506071 Msa0078160:CDS
TCAATACAAACAGTTGATCT+TGG 0.347401 1_2:+55505802 Msa0078160:intron
AGTTACTCCTTCCCTTGCTT+TGG 0.349148 1_2:+55506101 Msa0078160:CDS
GATCCCTTTACTCCAATTGA+TGG 0.363586 1_2:+55506652 Msa0078160:CDS
TCAAGTGAAACTCTAGTTAG+AGG 0.364835 1_2:+55506013 Msa0078160:five_prime_UTR
TTGCGGCTGCAATTGTAGTT+TGG 0.367187 1_2:-55505614 None:intergenic
CAGAAGCCAACAGTACTAAT+AGG 0.371016 1_2:+55505845 Msa0078160:five_prime_UTR
GACACTGTCTGAGAATTATA+CGG 0.378882 1_2:+55505452 Msa0078160:five_prime_UTR
GGCACCAGTTGCACCGGATT+AGG 0.382985 1_2:-55506589 None:intergenic
ACTAGAGTTTCACTTGAATC+TGG 0.383055 1_2:-55506007 None:intergenic
TTTGGTTCCTCAGATCATTA+GGG 0.394374 1_2:+55506504 Msa0078160:intron
GGCAACTCTTTAAAATTCAT+AGG 0.394815 1_2:+55506807 Msa0078160:exon
ATTGTGCTATTAAATTGTTC+TGG 0.404463 1_2:+55506037 Msa0078160:five_prime_UTR
GGTCCATCAATTGGAGTAAA+GGG 0.415428 1_2:-55506655 None:intergenic
GTTCAACTGTTCATGCTTGA+AGG 0.416044 1_2:+55506721 Msa0078160:CDS
TGGGCTGAGGTATTTGTCTA+AGG 0.422017 1_2:+55505546 Msa0078160:five_prime_UTR
AGGGCCGCCGGGGCCTAATC+CGG 0.428980 1_2:+55506576 Msa0078160:CDS
TCCTCAGATCATTAGGGAAC+CGG 0.429301 1_2:+55506510 Msa0078160:intron
TTTCCAACAGGTCCATCAAT+TGG 0.431388 1_2:-55506664 None:intergenic
GGGGCCTAATCCGGTGCAAC+TGG 0.436807 1_2:+55506585 Msa0078160:CDS
TTAAATGCAGAGAGAATTTG+AGG 0.438567 1_2:+55506255 Msa0078160:intron
GAAGAAAAGTACTTTCCAAC+AGG 0.449114 1_2:-55506676 None:intergenic
AGGTTACGTTCAGAGTTCTT+GGG 0.478184 1_2:+55506985 Msa0078160:three_prime_UTR
AGGTCCATCAATTGGAGTAA+AGG 0.483632 1_2:-55506656 None:intergenic
GACATTGTCCCCATGATGAC+AGG 0.489475 1_2:+55506749 Msa0078160:CDS
TCAATTGTAACAGGGCCGCC+GGG 0.490938 1_2:+55506565 Msa0078160:CDS
ACTCCAATTGATGGACCTGT+TGG 0.491390 1_2:+55506661 Msa0078160:CDS
TTCAACTGTTCATGCTTGAA+GGG 0.491418 1_2:+55506722 Msa0078160:CDS
GAGTTTCCTATTAGTACTGT+TGG 0.496781 1_2:-55505851 None:intergenic
ATCAATTGTAACAGGGCCGC+CGG 0.498322 1_2:+55506564 Msa0078160:CDS
GTACTAATAGGAAACTCTGT+TGG 0.499809 1_2:+55505857 Msa0078160:five_prime_UTR
CTAATTCAGGCCTGTCATCA+TGG 0.500280 1_2:-55506759 None:intergenic
TTTCGTATACCATGGAAACA+TGG 0.503219 1_2:+55505526 Msa0078160:five_prime_UTR
CTGTTCATGCTTGAAGGGGT+TGG 0.503540 1_2:+55506727 Msa0078160:CDS
ATGTCTATTGGAAGGAAGAA+AGG 0.507439 1_2:+55506965 Msa0078160:three_prime_UTR
TAATTCAGGCCTGTCATCAT+GGG 0.516079 1_2:-55506758 None:intergenic
AAAATCAATCAGCCAAAGCA+AGG 0.543664 1_2:-55506113 None:intergenic
GGAGCATCAGATAAGCCACC+AGG 0.544264 1_2:+55505501 Msa0078160:five_prime_UTR
TACCTCAGCCCATGTTTCCA+TGG 0.544343 1_2:-55505535 None:intergenic
AAGGCTCCTTCAGCATTCGC+CGG 0.569196 1_2:-55506529 None:intergenic
CTTCCTTCCAATAGACATGG+TGG 0.571251 1_2:-55506960 None:intergenic
AGGGAACCGGCGAATGCTGA+AGG 0.582575 1_2:+55506523 Msa0078160:CDS
TCAGAGTTCTTGGGAAAACA+TGG 0.583064 1_2:+55506994 Msa0078160:three_prime_UTR
TACCATGGAAACATGGGCTG+AGG 0.583191 1_2:+55505533 Msa0078160:five_prime_UTR
CTTGATATTTAGGCAAAATG+TGG 0.584801 1_2:-55505686 None:intergenic
CTGCATTGTAACTGTAATTG+CGG 0.586727 1_2:+55505663 Msa0078160:five_prime_UTR
TCTCTAAAATAGTTATATTG+CGG 0.594640 1_2:-55505631 None:intergenic
ACACCACCATGTCTATTGGA+AGG 0.595153 1_2:+55506957 Msa0078160:three_prime_UTR
AAATCAATCAGCCAAAGCAA+GGG 0.595342 1_2:-55506112 None:intergenic
TTCGTATACCATGGAAACAT+GGG 0.598366 1_2:+55505527 Msa0078160:five_prime_UTR
ATCAACATAATCTATACATG+TGG 0.601133 1_2:-55506912 None:intergenic
GTGCTATTAAATTGTTCTGG+TGG 0.607382 1_2:+55506040 Msa0078160:five_prime_UTR
AGTTGCACCGGATTAGGCCC+CGG 0.614113 1_2:-55506583 None:intergenic
TTTCTTCCTTCCAATAGACA+TGG 0.618190 1_2:-55506963 None:intergenic
CAATCAGCCAAAGCAAGGGA+AGG 0.620564 1_2:-55506108 None:intergenic
CATTTGTATCAATTGTAACA+GGG 0.626940 1_2:+55506557 Msa0078160:CDS
TCCATGGTATACGAAAAGCC+TGG 0.647873 1_2:-55505519 None:intergenic
CAATTGTAACAGGGCCGCCG+GGG 0.653302 1_2:+55506566 Msa0078160:CDS
TCAACTGTTCATGCTTGAAG+GGG 0.658262 1_2:+55506723 Msa0078160:CDS
AATTCAGGCCTGTCATCATG+GGG 0.687756 1_2:-55506757 None:intergenic
ATGGTATACGAAAAGCCTGG+TGG 0.725251 1_2:-55505516 None:intergenic
TGCACCGGATTAGGCCCCGG+CGG 0.755765 1_2:-55506580 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCTTTTACATTTAATTTAT+AGG - chr1_2:55507079-55507098 None:intergenic 10.0%
!!! TTCTTTTACATTTAATTTAT+AGG - chr1_2:55507079-55507098 None:intergenic 10.0%
!!! CATAACAAATTTAACTTATA+CGG + chr1_2:55505771-55505790 Msa0078160:intron 15.0%
!!! ACTTATAAGAATTCATATTT+TGG + chr1_2:55506486-55506505 Msa0078160:intron 15.0%
!!! CATAACAAATTTAACTTATA+CGG + chr1_2:55505771-55505790 Msa0078160:intron 15.0%
!!! ACTTATAAGAATTCATATTT+TGG + chr1_2:55506486-55506505 Msa0078160:intron 15.0%
!!! TCTCTAAAATAGTTATATTG+CGG - chr1_2:55505634-55505653 None:intergenic 20.0%
!!! TGATTTTTTATTGAACCAAA+AGG + chr1_2:55506129-55506148 Msa0078160:CDS 20.0%
!!! GATTTTTTATTGAACCAAAA+GGG + chr1_2:55506130-55506149 Msa0078160:CDS 20.0%
!! CAAAAAATTTAGGGAAATTA+TGG - chr1_2:55506211-55506230 None:intergenic 20.0%
!!! ATTTCCCTAAATTTTTTGAT+AGG + chr1_2:55506213-55506232 Msa0078160:intron 20.0%
!! GTTTCCTATCAAAAAATTTA+GGG - chr1_2:55506220-55506239 None:intergenic 20.0%
!! TGTTTCCTATCAAAAAATTT+AGG - chr1_2:55506221-55506240 None:intergenic 20.0%
!! AAAAAAATTAATACTCCTTC+CGG - chr1_2:55506449-55506468 None:intergenic 20.0%
!!! AAAATAGGCAATGATATTTT+TGG - chr1_2:55506613-55506632 None:intergenic 20.0%
!!! ATTGCCTATTTTACTTTTAT+GGG + chr1_2:55506621-55506640 Msa0078160:CDS 20.0%
!!! AACCTTTTATAGTTTGTAAT+TGG + chr1_2:55506854-55506873 Msa0078160:three_prime_UTR 20.0%
!! TTAAATGTAAAAGAAAAAGC+AGG + chr1_2:55507084-55507103 Msa0078160:three_prime_UTR 20.0%
!!! TCTCTAAAATAGTTATATTG+CGG - chr1_2:55505634-55505653 None:intergenic 20.0%
!!! TGATTTTTTATTGAACCAAA+AGG + chr1_2:55506129-55506148 Msa0078160:CDS 20.0%
!!! GATTTTTTATTGAACCAAAA+GGG + chr1_2:55506130-55506149 Msa0078160:CDS 20.0%
!! CAAAAAATTTAGGGAAATTA+TGG - chr1_2:55506211-55506230 None:intergenic 20.0%
!!! ATTTCCCTAAATTTTTTGAT+AGG + chr1_2:55506213-55506232 Msa0078160:intron 20.0%
!! GTTTCCTATCAAAAAATTTA+GGG - chr1_2:55506220-55506239 None:intergenic 20.0%
!! TGTTTCCTATCAAAAAATTT+AGG - chr1_2:55506221-55506240 None:intergenic 20.0%
!! AAAAAAATTAATACTCCTTC+CGG - chr1_2:55506449-55506468 None:intergenic 20.0%
!!! AAAATAGGCAATGATATTTT+TGG - chr1_2:55506613-55506632 None:intergenic 20.0%
!!! ATTGCCTATTTTACTTTTAT+GGG + chr1_2:55506621-55506640 Msa0078160:CDS 20.0%
!!! AACCTTTTATAGTTTGTAAT+TGG + chr1_2:55506854-55506873 Msa0078160:three_prime_UTR 20.0%
! TTTAATGATGTCGAACTAAA+AGG - chr1_2:55505573-55505592 None:intergenic 25.0%
!! ATTGTGCTATTAAATTGTTC+TGG + chr1_2:55506037-55506056 Msa0078160:five_prime_UTR 25.0%
! AAAGGTAATCTCTTTAGATT+AGG + chr1_2:55506185-55506204 Msa0078160:intron 25.0%
!! ATTTTTGTCTACAAAACCAA+CGG - chr1_2:55506388-55506407 None:intergenic 25.0%
! AATTGATACAAATGCATCTA+AGG - chr1_2:55506551-55506570 None:intergenic 25.0%
! CATTTGTATCAATTGTAACA+GGG + chr1_2:55506557-55506576 Msa0078160:CDS 25.0%
!!! CATTGCCTATTTTACTTTTA+TGG + chr1_2:55506620-55506639 Msa0078160:CDS 25.0%
!!! TTGCCTATTTTACTTTTATG+GGG + chr1_2:55506622-55506641 Msa0078160:CDS 25.0%
!!! AATTTTTCATGGACTAATTC+AGG - chr1_2:55506775-55506794 None:intergenic 25.0%
! CACCAATTACAAACTATAAA+AGG - chr1_2:55506859-55506878 None:intergenic 25.0%
! ATCAACATAATCTATACATG+TGG - chr1_2:55506915-55506934 None:intergenic 25.0%
! TTTAATGATGTCGAACTAAA+AGG - chr1_2:55505573-55505592 None:intergenic 25.0%
!! ATTGTGCTATTAAATTGTTC+TGG + chr1_2:55506037-55506056 Msa0078160:five_prime_UTR 25.0%
! AAAGGTAATCTCTTTAGATT+AGG + chr1_2:55506185-55506204 Msa0078160:intron 25.0%
!! ATTTTTGTCTACAAAACCAA+CGG - chr1_2:55506388-55506407 None:intergenic 25.0%
! AATTGATACAAATGCATCTA+AGG - chr1_2:55506551-55506570 None:intergenic 25.0%
! CATTTGTATCAATTGTAACA+GGG + chr1_2:55506557-55506576 Msa0078160:CDS 25.0%
!!! CATTGCCTATTTTACTTTTA+TGG + chr1_2:55506620-55506639 Msa0078160:CDS 25.0%
!!! TTGCCTATTTTACTTTTATG+GGG + chr1_2:55506622-55506641 Msa0078160:CDS 25.0%
!!! AATTTTTCATGGACTAATTC+AGG - chr1_2:55506775-55506794 None:intergenic 25.0%
! CACCAATTACAAACTATAAA+AGG - chr1_2:55506859-55506878 None:intergenic 25.0%
! ATCAACATAATCTATACATG+TGG - chr1_2:55506915-55506934 None:intergenic 25.0%
GTTTATGCTATTGATCTTCT+TGG + chr1_2:55505474-55505493 Msa0078160:five_prime_UTR 30.0%
CTTGATATTTAGGCAAAATG+TGG - chr1_2:55505689-55505708 None:intergenic 30.0%
! CACATTTTGCCTAAATATCA+AGG + chr1_2:55505687-55505706 Msa0078160:five_prime_UTR 30.0%
TGATGCAAACCTTGATATTT+AGG - chr1_2:55505699-55505718 None:intergenic 30.0%
TCAATACAAACAGTTGATCT+TGG + chr1_2:55505802-55505821 Msa0078160:intron 30.0%
!! ACAAAGCAATTGTTGATGAT+TGG + chr1_2:55506071-55506090 Msa0078160:CDS 30.0%
!! TTTTTGAGCGTGTTAAACAA+AGG + chr1_2:55506167-55506186 Msa0078160:CDS 30.0%
TTAAATGCAGAGAGAATTTG+AGG + chr1_2:55506255-55506274 Msa0078160:intron 30.0%
TACAAAACCAACGGTTAAAA+AGG - chr1_2:55506379-55506398 None:intergenic 30.0%
!!! TTGTCGTTTTCAAAGTTCAA+TGG + chr1_2:55506418-55506437 Msa0078160:intron 30.0%
GCATTTGTATCAATTGTAAC+AGG + chr1_2:55506556-55506575 Msa0078160:CDS 30.0%
TCTCCCCATAAAAGTAAAAT+AGG - chr1_2:55506628-55506647 None:intergenic 30.0%
! TGAACATTTTCTTGTTGAGA+AGG - chr1_2:55506706-55506725 None:intergenic 30.0%
!! GGCAACTCTTTAAAATTCAT+AGG + chr1_2:55506807-55506826 Msa0078160:exon 30.0%
! ATATGTGACAGTTTTTCATG+AGG - chr1_2:55506889-55506908 None:intergenic 30.0%
CTTCTTGATACAACGTATTT+GGG - chr1_2:55507056-55507075 None:intergenic 30.0%
GTTTATGCTATTGATCTTCT+TGG + chr1_2:55505474-55505493 Msa0078160:five_prime_UTR 30.0%
CTTGATATTTAGGCAAAATG+TGG - chr1_2:55505689-55505708 None:intergenic 30.0%
! CACATTTTGCCTAAATATCA+AGG + chr1_2:55505687-55505706 Msa0078160:five_prime_UTR 30.0%
TGATGCAAACCTTGATATTT+AGG - chr1_2:55505699-55505718 None:intergenic 30.0%
TCAATACAAACAGTTGATCT+TGG + chr1_2:55505802-55505821 Msa0078160:intron 30.0%
!! ACAAAGCAATTGTTGATGAT+TGG + chr1_2:55506071-55506090 Msa0078160:CDS 30.0%
!! TTTTTGAGCGTGTTAAACAA+AGG + chr1_2:55506167-55506186 Msa0078160:CDS 30.0%
TTAAATGCAGAGAGAATTTG+AGG + chr1_2:55506255-55506274 Msa0078160:intron 30.0%
TACAAAACCAACGGTTAAAA+AGG - chr1_2:55506379-55506398 None:intergenic 30.0%
!!! TTGTCGTTTTCAAAGTTCAA+TGG + chr1_2:55506418-55506437 Msa0078160:intron 30.0%
GCATTTGTATCAATTGTAAC+AGG + chr1_2:55506556-55506575 Msa0078160:CDS 30.0%
TCTCCCCATAAAAGTAAAAT+AGG - chr1_2:55506628-55506647 None:intergenic 30.0%
! TGAACATTTTCTTGTTGAGA+AGG - chr1_2:55506706-55506725 None:intergenic 30.0%
!! GGCAACTCTTTAAAATTCAT+AGG + chr1_2:55506807-55506826 Msa0078160:exon 30.0%
! ATATGTGACAGTTTTTCATG+AGG - chr1_2:55506889-55506908 None:intergenic 30.0%
CTTCTTGATACAACGTATTT+GGG - chr1_2:55507056-55507075 None:intergenic 30.0%
GACACTGTCTGAGAATTATA+CGG + chr1_2:55505452-55505471 Msa0078160:five_prime_UTR 35.0%
! GCTATTGATCTTCTTGGTTT+TGG + chr1_2:55505480-55505499 Msa0078160:five_prime_UTR 35.0%
TTTCGTATACCATGGAAACA+TGG + chr1_2:55505526-55505545 Msa0078160:five_prime_UTR 35.0%
TTCGTATACCATGGAAACAT+GGG + chr1_2:55505527-55505546 Msa0078160:five_prime_UTR 35.0%
TTGTAGTTTGGACTGCAAAT+TGG - chr1_2:55505605-55505624 None:intergenic 35.0%
CTGCATTGTAACTGTAATTG+CGG + chr1_2:55505663-55505682 Msa0078160:five_prime_UTR 35.0%
ACAGTTGATCTTGGATTTCT+TGG + chr1_2:55505811-55505830 Msa0078160:intron 35.0%
GAGTTTCCTATTAGTACTGT+TGG - chr1_2:55505854-55505873 None:intergenic 35.0%
GTACTAATAGGAAACTCTGT+TGG + chr1_2:55505857-55505876 Msa0078160:five_prime_UTR 35.0%
ACTAGAGTTTCACTTGAATC+TGG - chr1_2:55506010-55506029 None:intergenic 35.0%
TCAAGTGAAACTCTAGTTAG+AGG + chr1_2:55506013-55506032 Msa0078160:five_prime_UTR 35.0%
! GTGCTATTAAATTGTTCTGG+TGG + chr1_2:55506040-55506059 Msa0078160:five_prime_UTR 35.0%
AAATCAATCAGCCAAAGCAA+GGG - chr1_2:55506115-55506134 None:intergenic 35.0%
AAAATCAATCAGCCAAAGCA+AGG - chr1_2:55506116-55506135 None:intergenic 35.0%
AACATCTTGAGTTCAGTGTA+TGG + chr1_2:55506278-55506297 Msa0078160:intron 35.0%
GAGTTCAGTGTATGGAAATA+AGG + chr1_2:55506286-55506305 Msa0078160:intron 35.0%
TTCAGTGTATGGAAATAAGG+AGG + chr1_2:55506289-55506308 Msa0078160:intron 35.0%
TCAAAGTTCAATGGAATCAC+CGG + chr1_2:55506427-55506446 Msa0078160:intron 35.0%
!!! TTTTGGTTCCTCAGATCATT+AGG + chr1_2:55506503-55506522 Msa0078160:intron 35.0%
! TTTGGTTCCTCAGATCATTA+GGG + chr1_2:55506504-55506523 Msa0078160:intron 35.0%
!! GAAGAAAAGTACTTTCCAAC+AGG - chr1_2:55506679-55506698 None:intergenic 35.0%
TTCAACTGTTCATGCTTGAA+GGG + chr1_2:55506722-55506741 Msa0078160:CDS 35.0%
TCCATGAAAAATTGCTTCCA+TGG + chr1_2:55506782-55506801 Msa0078160:CDS 35.0%
! ACCATGGAAGCAATTTTTCA+TGG - chr1_2:55506786-55506805 None:intergenic 35.0%
TGAAAAATTGCTTCCATGGT+TGG + chr1_2:55506786-55506805 Msa0078160:CDS 35.0%
!! TTTTAAAGAGTTGCCAACCA+TGG - chr1_2:55506802-55506821 None:intergenic 35.0%
ATTTACACCACCATGTCTAT+TGG + chr1_2:55506953-55506972 Msa0078160:three_prime_UTR 35.0%
TTTCTTCCTTCCAATAGACA+TGG - chr1_2:55506966-55506985 None:intergenic 35.0%
ATGTCTATTGGAAGGAAGAA+AGG + chr1_2:55506965-55506984 Msa0078160:three_prime_UTR 35.0%
GCTTCTTGATACAACGTATT+TGG - chr1_2:55507057-55507076 None:intergenic 35.0%
GACACTGTCTGAGAATTATA+CGG + chr1_2:55505452-55505471 Msa0078160:five_prime_UTR 35.0%
! GCTATTGATCTTCTTGGTTT+TGG + chr1_2:55505480-55505499 Msa0078160:five_prime_UTR 35.0%
TTTCGTATACCATGGAAACA+TGG + chr1_2:55505526-55505545 Msa0078160:five_prime_UTR 35.0%
TTCGTATACCATGGAAACAT+GGG + chr1_2:55505527-55505546 Msa0078160:five_prime_UTR 35.0%
TTGTAGTTTGGACTGCAAAT+TGG - chr1_2:55505605-55505624 None:intergenic 35.0%
CTGCATTGTAACTGTAATTG+CGG + chr1_2:55505663-55505682 Msa0078160:five_prime_UTR 35.0%
ACAGTTGATCTTGGATTTCT+TGG + chr1_2:55505811-55505830 Msa0078160:intron 35.0%
GAGTTTCCTATTAGTACTGT+TGG - chr1_2:55505854-55505873 None:intergenic 35.0%
GTACTAATAGGAAACTCTGT+TGG + chr1_2:55505857-55505876 Msa0078160:five_prime_UTR 35.0%
ACTAGAGTTTCACTTGAATC+TGG - chr1_2:55506010-55506029 None:intergenic 35.0%
TCAAGTGAAACTCTAGTTAG+AGG + chr1_2:55506013-55506032 Msa0078160:five_prime_UTR 35.0%
! GTGCTATTAAATTGTTCTGG+TGG + chr1_2:55506040-55506059 Msa0078160:five_prime_UTR 35.0%
AAATCAATCAGCCAAAGCAA+GGG - chr1_2:55506115-55506134 None:intergenic 35.0%
AAAATCAATCAGCCAAAGCA+AGG - chr1_2:55506116-55506135 None:intergenic 35.0%
AACATCTTGAGTTCAGTGTA+TGG + chr1_2:55506278-55506297 Msa0078160:intron 35.0%
GAGTTCAGTGTATGGAAATA+AGG + chr1_2:55506286-55506305 Msa0078160:intron 35.0%
TTCAGTGTATGGAAATAAGG+AGG + chr1_2:55506289-55506308 Msa0078160:intron 35.0%
TCAAAGTTCAATGGAATCAC+CGG + chr1_2:55506427-55506446 Msa0078160:intron 35.0%
!!! TTTTGGTTCCTCAGATCATT+AGG + chr1_2:55506503-55506522 Msa0078160:intron 35.0%
! TTTGGTTCCTCAGATCATTA+GGG + chr1_2:55506504-55506523 Msa0078160:intron 35.0%
!! GAAGAAAAGTACTTTCCAAC+AGG - chr1_2:55506679-55506698 None:intergenic 35.0%
TTCAACTGTTCATGCTTGAA+GGG + chr1_2:55506722-55506741 Msa0078160:CDS 35.0%
TCCATGAAAAATTGCTTCCA+TGG + chr1_2:55506782-55506801 Msa0078160:CDS 35.0%
! ACCATGGAAGCAATTTTTCA+TGG - chr1_2:55506786-55506805 None:intergenic 35.0%
TGAAAAATTGCTTCCATGGT+TGG + chr1_2:55506786-55506805 Msa0078160:CDS 35.0%
!! TTTTAAAGAGTTGCCAACCA+TGG - chr1_2:55506802-55506821 None:intergenic 35.0%
ATTTACACCACCATGTCTAT+TGG + chr1_2:55506953-55506972 Msa0078160:three_prime_UTR 35.0%
TTTCTTCCTTCCAATAGACA+TGG - chr1_2:55506966-55506985 None:intergenic 35.0%
ATGTCTATTGGAAGGAAGAA+AGG + chr1_2:55506965-55506984 Msa0078160:three_prime_UTR 35.0%
GCTTCTTGATACAACGTATT+TGG - chr1_2:55507057-55507076 None:intergenic 35.0%
ACAGTTCTTAATCGCAGTTG+CGG - chr1_2:55505737-55505756 None:intergenic 40.0%
CAGAAGCCAACAGTACTAAT+AGG + chr1_2:55505845-55505864 Msa0078160:five_prime_UTR 40.0%
! TTGCAGAAGCAATTCCCTTT+TGG - chr1_2:55506147-55506166 None:intergenic 40.0%
GAACTCGTGGAGGTAAATTA+AGG + chr1_2:55506323-55506342 Msa0078160:intron 40.0%
! CTTCGTTCCTTTTTAACCGT+TGG + chr1_2:55506369-55506388 Msa0078160:intron 40.0%
GATCCCTTTACTCCAATTGA+TGG + chr1_2:55506652-55506671 Msa0078160:CDS 40.0%
GGTCCATCAATTGGAGTAAA+GGG - chr1_2:55506658-55506677 None:intergenic 40.0%
AGGTCCATCAATTGGAGTAA+AGG - chr1_2:55506659-55506678 None:intergenic 40.0%
TTTCCAACAGGTCCATCAAT+TGG - chr1_2:55506667-55506686 None:intergenic 40.0%
GTTCAACTGTTCATGCTTGA+AGG + chr1_2:55506721-55506740 Msa0078160:CDS 40.0%
TCAACTGTTCATGCTTGAAG+GGG + chr1_2:55506723-55506742 Msa0078160:CDS 40.0%
TAATTCAGGCCTGTCATCAT+GGG - chr1_2:55506761-55506780 None:intergenic 40.0%
AAGGTTACGTTCAGAGTTCT+TGG + chr1_2:55506984-55507003 Msa0078160:three_prime_UTR 40.0%
AGGTTACGTTCAGAGTTCTT+GGG + chr1_2:55506985-55507004 Msa0078160:three_prime_UTR 40.0%
TCAGAGTTCTTGGGAAAACA+TGG + chr1_2:55506994-55507013 Msa0078160:three_prime_UTR 40.0%
ACAGTTCTTAATCGCAGTTG+CGG - chr1_2:55505737-55505756 None:intergenic 40.0%
CAGAAGCCAACAGTACTAAT+AGG + chr1_2:55505845-55505864 Msa0078160:five_prime_UTR 40.0%
! TTGCAGAAGCAATTCCCTTT+TGG - chr1_2:55506147-55506166 None:intergenic 40.0%
GAACTCGTGGAGGTAAATTA+AGG + chr1_2:55506323-55506342 Msa0078160:intron 40.0%
! CTTCGTTCCTTTTTAACCGT+TGG + chr1_2:55506369-55506388 Msa0078160:intron 40.0%
GATCCCTTTACTCCAATTGA+TGG + chr1_2:55506652-55506671 Msa0078160:CDS 40.0%
GGTCCATCAATTGGAGTAAA+GGG - chr1_2:55506658-55506677 None:intergenic 40.0%
AGGTCCATCAATTGGAGTAA+AGG - chr1_2:55506659-55506678 None:intergenic 40.0%
TTTCCAACAGGTCCATCAAT+TGG - chr1_2:55506667-55506686 None:intergenic 40.0%
GTTCAACTGTTCATGCTTGA+AGG + chr1_2:55506721-55506740 Msa0078160:CDS 40.0%
TCAACTGTTCATGCTTGAAG+GGG + chr1_2:55506723-55506742 Msa0078160:CDS 40.0%
TAATTCAGGCCTGTCATCAT+GGG - chr1_2:55506761-55506780 None:intergenic 40.0%
AAGGTTACGTTCAGAGTTCT+TGG + chr1_2:55506984-55507003 Msa0078160:three_prime_UTR 40.0%
AGGTTACGTTCAGAGTTCTT+GGG + chr1_2:55506985-55507004 Msa0078160:three_prime_UTR 40.0%
TCAGAGTTCTTGGGAAAACA+TGG + chr1_2:55506994-55507013 Msa0078160:three_prime_UTR 40.0%
ATGGTATACGAAAAGCCTGG+TGG - chr1_2:55505519-55505538 None:intergenic 45.0%
! ACCAGGCTTTTCGTATACCA+TGG + chr1_2:55505518-55505537 Msa0078160:five_prime_UTR 45.0%
TCCATGGTATACGAAAAGCC+TGG - chr1_2:55505522-55505541 None:intergenic 45.0%
! TGGGCTGAGGTATTTGTCTA+AGG + chr1_2:55505546-55505565 Msa0078160:five_prime_UTR 45.0%
TTGCGGCTGCAATTGTAGTT+TGG - chr1_2:55505617-55505636 None:intergenic 45.0%
AGTTACTCCTTCCCTTGCTT+TGG + chr1_2:55506101-55506120 Msa0078160:CDS 45.0%
GTATGGAAATAAGGAGGCTG+TGG + chr1_2:55506295-55506314 Msa0078160:intron 45.0%
AGTTCAATGGAATCACCGGA+AGG + chr1_2:55506431-55506450 Msa0078160:intron 45.0%
TCCTCAGATCATTAGGGAAC+CGG + chr1_2:55506510-55506529 Msa0078160:intron 45.0%
!!! ATTTTTGGCACCAGTTGCAC+CGG - chr1_2:55506598-55506617 None:intergenic 45.0%
! ACTCCAATTGATGGACCTGT+TGG + chr1_2:55506661-55506680 Msa0078160:CDS 45.0%
AATTCAGGCCTGTCATCATG+GGG - chr1_2:55506760-55506779 None:intergenic 45.0%
CTAATTCAGGCCTGTCATCA+TGG - chr1_2:55506762-55506781 None:intergenic 45.0%
ACACCACCATGTCTATTGGA+AGG + chr1_2:55506957-55506976 Msa0078160:three_prime_UTR 45.0%
CTTCCTTCCAATAGACATGG+TGG - chr1_2:55506963-55506982 None:intergenic 45.0%
ATGGTATACGAAAAGCCTGG+TGG - chr1_2:55505519-55505538 None:intergenic 45.0%
! ACCAGGCTTTTCGTATACCA+TGG + chr1_2:55505518-55505537 Msa0078160:five_prime_UTR 45.0%
TCCATGGTATACGAAAAGCC+TGG - chr1_2:55505522-55505541 None:intergenic 45.0%
! TGGGCTGAGGTATTTGTCTA+AGG + chr1_2:55505546-55505565 Msa0078160:five_prime_UTR 45.0%
TTGCGGCTGCAATTGTAGTT+TGG - chr1_2:55505617-55505636 None:intergenic 45.0%
AGTTACTCCTTCCCTTGCTT+TGG + chr1_2:55506101-55506120 Msa0078160:CDS 45.0%
GTATGGAAATAAGGAGGCTG+TGG + chr1_2:55506295-55506314 Msa0078160:intron 45.0%
AGTTCAATGGAATCACCGGA+AGG + chr1_2:55506431-55506450 Msa0078160:intron 45.0%
TCCTCAGATCATTAGGGAAC+CGG + chr1_2:55506510-55506529 Msa0078160:intron 45.0%
!!! ATTTTTGGCACCAGTTGCAC+CGG - chr1_2:55506598-55506617 None:intergenic 45.0%
! ACTCCAATTGATGGACCTGT+TGG + chr1_2:55506661-55506680 Msa0078160:CDS 45.0%
AATTCAGGCCTGTCATCATG+GGG - chr1_2:55506760-55506779 None:intergenic 45.0%
CTAATTCAGGCCTGTCATCA+TGG - chr1_2:55506762-55506781 None:intergenic 45.0%
ACACCACCATGTCTATTGGA+AGG + chr1_2:55506957-55506976 Msa0078160:three_prime_UTR 45.0%
CTTCCTTCCAATAGACATGG+TGG - chr1_2:55506963-55506982 None:intergenic 45.0%
! TACCATGGAAACATGGGCTG+AGG + chr1_2:55505533-55505552 Msa0078160:five_prime_UTR 50.0%
TACCTCAGCCCATGTTTCCA+TGG - chr1_2:55505538-55505557 None:intergenic 50.0%
! TGTCTCATTGCTGCTGCTTC+AGG + chr1_2:55505890-55505909 Msa0078160:five_prime_UTR 50.0%
CAATCAGCCAAAGCAAGGGA+AGG - chr1_2:55506111-55506130 None:intergenic 50.0%
TGTGGATGATGAACTCGTGG+AGG + chr1_2:55506313-55506332 Msa0078160:intron 50.0%
ATCAATTGTAACAGGGCCGC+CGG + chr1_2:55506564-55506583 Msa0078160:CDS 50.0%
CTGTTCATGCTTGAAGGGGT+TGG + chr1_2:55506727-55506746 Msa0078160:CDS 50.0%
GACATTGTCCCCATGATGAC+AGG + chr1_2:55506749-55506768 Msa0078160:CDS 50.0%
! TACCATGGAAACATGGGCTG+AGG + chr1_2:55505533-55505552 Msa0078160:five_prime_UTR 50.0%
TACCTCAGCCCATGTTTCCA+TGG - chr1_2:55505538-55505557 None:intergenic 50.0%
! TGTCTCATTGCTGCTGCTTC+AGG + chr1_2:55505890-55505909 Msa0078160:five_prime_UTR 50.0%
CAATCAGCCAAAGCAAGGGA+AGG - chr1_2:55506111-55506130 None:intergenic 50.0%
TGTGGATGATGAACTCGTGG+AGG + chr1_2:55506313-55506332 Msa0078160:intron 50.0%
ATCAATTGTAACAGGGCCGC+CGG + chr1_2:55506564-55506583 Msa0078160:CDS 50.0%
CTGTTCATGCTTGAAGGGGT+TGG + chr1_2:55506727-55506746 Msa0078160:CDS 50.0%
GACATTGTCCCCATGATGAC+AGG + chr1_2:55506749-55506768 Msa0078160:CDS 50.0%
! GGAGCATCAGATAAGCCACC+AGG + chr1_2:55505501-55505520 Msa0078160:five_prime_UTR 55.0%
GGCTGTGGATGATGAACTCG+TGG + chr1_2:55506310-55506329 Msa0078160:intron 55.0%
! GCCGGTTCCCTAATGATCTG+AGG - chr1_2:55506514-55506533 None:intergenic 55.0%
AAGGCTCCTTCAGCATTCGC+CGG - chr1_2:55506532-55506551 None:intergenic 55.0%
TCAATTGTAACAGGGCCGCC+GGG + chr1_2:55506565-55506584 Msa0078160:CDS 55.0%
! GGAGCATCAGATAAGCCACC+AGG + chr1_2:55505501-55505520 Msa0078160:five_prime_UTR 55.0%
GGCTGTGGATGATGAACTCG+TGG + chr1_2:55506310-55506329 Msa0078160:intron 55.0%
! GCCGGTTCCCTAATGATCTG+AGG - chr1_2:55506514-55506533 None:intergenic 55.0%
AAGGCTCCTTCAGCATTCGC+CGG - chr1_2:55506532-55506551 None:intergenic 55.0%
TCAATTGTAACAGGGCCGCC+GGG + chr1_2:55506565-55506584 Msa0078160:CDS 55.0%
AGGGAACCGGCGAATGCTGA+AGG + chr1_2:55506523-55506542 Msa0078160:CDS 60.0%
CAATTGTAACAGGGCCGCCG+GGG + chr1_2:55506566-55506585 Msa0078160:CDS 60.0%
! AGTTGCACCGGATTAGGCCC+CGG - chr1_2:55506586-55506605 None:intergenic 60.0%
GGCACCAGTTGCACCGGATT+AGG - chr1_2:55506592-55506611 None:intergenic 60.0%
AGGGAACCGGCGAATGCTGA+AGG + chr1_2:55506523-55506542 Msa0078160:CDS 60.0%
CAATTGTAACAGGGCCGCCG+GGG + chr1_2:55506566-55506585 Msa0078160:CDS 60.0%
! AGTTGCACCGGATTAGGCCC+CGG - chr1_2:55506586-55506605 None:intergenic 60.0%
GGCACCAGTTGCACCGGATT+AGG - chr1_2:55506592-55506611 None:intergenic 60.0%
GGGGCCTAATCCGGTGCAAC+TGG + chr1_2:55506585-55506604 Msa0078160:CDS 65.0%
GGGGCCTAATCCGGTGCAAC+TGG + chr1_2:55506585-55506604 Msa0078160:CDS 65.0%
! TGCACCGGATTAGGCCCCGG+CGG - chr1_2:55506583-55506602 None:intergenic 70.0%
! TGCACCGGATTAGGCCCCGG+CGG - chr1_2:55506583-55506602 None:intergenic 70.0%
AGGGCCGCCGGGGCCTAATC+CGG + chr1_2:55506576-55506595 Msa0078160:CDS 75.0%
AGGGCCGCCGGGGCCTAATC+CGG + chr1_2:55506576-55506595 Msa0078160:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 55505441 55507103 55505441 ID=Msa0078160;Name=Msa0078160
chr1_2 mRNA 55505441 55507103 55505441 ID=Msa0078160-mRNA-1;Parent=Msa0078160;Name=Msa0078160-mRNA-1;_AED=0.07;_eAED=0.07;_QI=433|0.75|0.8|1|0.5|0.6|5|284|151
chr1_2 exon 55505441 55505708 55505441 ID=Msa0078160-mRNA-1:exon:17302;Parent=Msa0078160-mRNA-1
chr1_2 exon 55505815 55505915 55505815 ID=Msa0078160-mRNA-1:exon:17303;Parent=Msa0078160-mRNA-1
chr1_2 exon 55506000 55506188 55506000 ID=Msa0078160-mRNA-1:exon:17304;Parent=Msa0078160-mRNA-1
chr1_2 exon 55506265 55506292 55506265 ID=Msa0078160-mRNA-1:exon:17305;Parent=Msa0078160-mRNA-1
chr1_2 exon 55506517 55507103 55506517 ID=Msa0078160-mRNA-1:exon:17306;Parent=Msa0078160-mRNA-1
chr1_2 five_prime_UTR 55505441 55505708 55505441 ID=Msa0078160-mRNA-1:five_prime_utr;Parent=Msa0078160-mRNA-1
chr1_2 five_prime_UTR 55505815 55505915 55505815 ID=Msa0078160-mRNA-1:five_prime_utr;Parent=Msa0078160-mRNA-1
chr1_2 five_prime_UTR 55506000 55506063 55506000 ID=Msa0078160-mRNA-1:five_prime_utr;Parent=Msa0078160-mRNA-1
chr1_2 CDS 55506064 55506188 55506064 ID=Msa0078160-mRNA-1:cds;Parent=Msa0078160-mRNA-1
chr1_2 CDS 55506265 55506292 55506265 ID=Msa0078160-mRNA-1:cds;Parent=Msa0078160-mRNA-1
chr1_2 CDS 55506517 55506819 55506517 ID=Msa0078160-mRNA-1:cds;Parent=Msa0078160-mRNA-1
chr1_2 three_prime_UTR 55506820 55507103 55506820 ID=Msa0078160-mRNA-1:three_prime_utr;Parent=Msa0078160-mRNA-1
Gene Sequence

>Msa0078160

ATGAACAACAAAGCAATTGTTGATGATTGGAGAATCAAGTTACTCCTTCCCTTGCTTTGGCTGATTGATTTTTTATTGAACCAAAAGGGAATTGCTTCTGCAATTTTTGAGCGTGTTAAACAAAGAGAGAATTTGAGGAACATCTTGAGTTCAATCATTAGGGAACCGGCGAATGCTGAAGGAGCCTTAGATGCATTTGTATCAATTGTAACAGGGCCGCCGGGGCCTAATCCGGTGCAACTGGTGCCAAAAATATCATTGCCTATTTTACTTTTATGGGGAGATGAAGATCCCTTTACTCCAATTGATGGACCTGTTGGAAAGTACTTTTCTTCATTGCCTTCTCAACAAGAAAATGTTCAACTGTTCATGCTTGAAGGGGTTGGACATTGTCCCCATGATGACAGGCCTGAATTAGTCCATGAAAAATTGCTTCCATGGTTGGCAACTCTTTAA

Protein sequence

>Msa0078160

MNNKAIVDDWRIKLLLPLLWLIDFLLNQKGIASAIFERVKQRENLRNILSSIIREPANAEGALDAFVSIVTGPPGPNPVQLVPKISLPILLLWGDEDPFTPIDGPVGKYFSSLPSQQENVQLFMLEGVGHCPHDDRPELVHEKLLPWLATL*