AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0734700

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0734700 MtrunA17_Chr5g0431511 95.556 270 12 0 30 299 33 302 0.0 540
Msa0734700 MtrunA17_Chr5g0431501 82.721 272 47 0 30 301 33 304 5.59e-168 476
Msa0734700 MtrunA17_Chr5g0431461 82.721 272 47 0 30 301 33 304 5.59e-168 476
Msa0734700 MtrunA17_Chr7g0218601 50.000 288 140 2 15 299 16 302 1.68e-98 298
Msa0734700 MtrunA17_Chr4g0011871 49.669 302 139 5 6 299 1 297 9.92e-95 288
Msa0734700 MtrunA17_Chr5g0419691 48.837 301 142 4 6 299 1 296 2.55e-94 287
Msa0734700 MtrunA17_Chr4g0011861 51.471 272 123 4 31 298 30 296 2.88e-94 281
Msa0734700 MtrunA17_Chr4g0011921 46.959 296 151 4 4 299 7 296 5.91e-91 279
Msa0734700 MtrunA17_Chr4g0011881 49.141 291 141 4 9 299 13 296 2.62e-90 277
Msa0734700 MtrunA17_Chr7g0218611 49.291 282 140 2 20 299 21 301 4.21e-90 277
Msa0734700 MtrunA17_Chr4g0011931 48.837 301 145 5 1 298 1 295 4.20e-89 267
Msa0734700 MtrunA17_Chr5g0406651 50.172 291 139 4 9 299 13 297 1.28e-87 270
Msa0734700 MtrunA17_Chr4g0011961 46.000 300 155 4 1 299 2 295 1.48e-85 265
Msa0734700 MtrunA17_Chr4g0011981 48.763 283 140 3 18 300 20 297 1.57e-85 265
Msa0734700 MtrunA17_Chr4g0011901 48.410 283 141 3 17 299 19 296 1.40e-82 257
Msa0734700 MtrunA17_Chr1g0156101 45.734 293 146 6 18 299 21 311 6.12e-81 253
Msa0734700 MtrunA17_Chr1g0156081 44.674 291 149 5 20 299 46 335 7.78e-79 249
Msa0734700 MtrunA17_Chr3g0116681 36.913 298 175 7 8 299 13 303 1.28e-56 190
Msa0734700 MtrunA17_Chr4g0058201 36.299 281 174 4 19 299 17 292 2.12e-53 181
Msa0734700 MtrunA17_Chr5g0431641 36.054 294 171 7 14 299 16 300 1.65e-52 179
Msa0734700 MtrunA17_Chr5g0445461 34.343 297 183 7 6 299 13 300 2.24e-52 179
Msa0734700 MtrunA17_Chr5g0445451 35.315 286 166 7 6 285 13 285 7.17e-52 177
Msa0734700 MtrunA17_Chr3g0101631 36.120 299 169 7 9 299 12 296 1.80e-51 176
Msa0734700 MtrunA17_Chr4g0024771 34.708 291 179 6 11 299 19 300 2.31e-50 173
Msa0734700 MtrunA17_Chr5g0445381 34.364 291 180 6 11 299 50 331 4.37e-50 173
Msa0734700 MtrunA17_Chr5g0403351 33.660 306 182 7 6 300 9 304 5.39e-50 172
Msa0734700 MtrunA17_Chr3g0101711 33.993 303 178 6 12 299 9 304 5.51e-50 172
Msa0734700 MtrunA17_Chr4g0047661 34.564 298 187 5 6 299 24 317 7.57e-50 172
Msa0734700 MtrunA17_Chr5g0445531 34.799 273 168 5 28 299 36 299 1.91e-49 171
Msa0734700 MtrunA17_Chr5g0445441 33.110 299 188 7 4 299 52 341 2.02e-49 172
Msa0734700 MtrunA17_Chr5g0403321 35.816 282 162 6 30 300 34 307 2.26e-49 171
Msa0734700 MtrunA17_Chr3g0101691 33.117 308 186 7 6 300 6 306 4.24e-49 170
Msa0734700 MtrunA17_Chr4g0058231 35.636 275 163 5 4 274 2 266 7.76e-49 169
Msa0734700 MtrunA17_Chr3g0116741 35.017 297 179 7 9 299 27 315 3.07e-47 166
Msa0734700 MtrunA17_Chr4g0047631 34.228 298 182 7 6 299 25 312 3.94e-47 165
Msa0734700 MtrunA17_Chr4g0047641 34.211 304 181 8 6 299 22 316 5.17e-47 165
Msa0734700 MtrunA17_Chr3g0101801 32.581 310 189 8 1 299 8 308 5.33e-47 165
Msa0734700 MtrunA17_Chr3g0101601 36.364 297 171 8 9 299 12 296 5.39e-47 164
Msa0734700 MtrunA17_Chr5g0431671 32.975 279 175 6 24 299 32 301 8.92e-47 164
Msa0734700 MtrunA17_Chr3g0101621 35.897 273 163 5 10 277 10 275 1.09e-46 163
Msa0734700 MtrunA17_Chr3g0101581 34.752 282 170 6 5 281 12 284 4.35e-46 162
Msa0734700 MtrunA17_Chr3g0101701 33.214 280 169 7 29 300 37 306 7.82e-46 161
Msa0734700 MtrunA17_Chr3g0101651 32.130 277 176 5 28 299 36 305 1.08e-45 161
Msa0734700 MtrunA17_Chr5g0403331 33.225 307 185 7 5 300 8 305 1.71e-45 160
Msa0734700 MtrunA17_Chr3g0101721 32.982 285 180 4 19 299 26 303 1.79e-45 160
Msa0734700 MtrunA17_Chr4g0058191 32.997 297 190 6 4 299 2 290 3.15e-45 159
Msa0734700 MtrunA17_Chr2g0310391 30.464 302 195 5 4 299 1 293 4.68e-45 159
Msa0734700 MtrunA17_Chr4g0058281 32.566 304 185 8 8 299 18 313 4.80e-45 159
Msa0734700 MtrunA17_Chr3g0101751 30.195 308 199 6 1 299 8 308 9.69e-45 159
Msa0734700 MtrunA17_Chr4g0047691 33.224 304 181 7 6 299 24 315 1.02e-44 159
Msa0734700 MtrunA17_Chr6g0472311 31.579 304 194 6 6 299 17 316 3.74e-44 157
Msa0734700 MtrunA17_Chr5g0445421 31.773 299 171 6 4 299 85 353 5.39e-44 157
Msa0734700 MtrunA17_Chr8g0361471 31.068 309 191 6 7 300 1 302 7.86e-44 156
Msa0734700 MtrunA17_Chr2g0310381 31.206 282 180 4 23 299 21 293 9.63e-44 155
Msa0734700 MtrunA17_Chr6g0463611 32.450 302 186 7 2 297 19 308 1.01e-43 152
Msa0734700 MtrunA17_Chr1g0156061 49.660 147 74 0 20 166 45 191 1.18e-43 155
Msa0734700 MtrunA17_Chr3g0101571 35.018 277 170 6 5 279 11 279 1.28e-43 155
Msa0734700 MtrunA17_Chr1g0162801 31.788 302 185 7 11 299 10 303 2.16e-43 155
Msa0734700 MtrunA17_Chr4g0076161 33.445 299 177 8 9 299 15 299 2.49e-42 152
Msa0734700 MtrunA17_Chr8g0382901 30.405 296 197 5 4 299 468 754 3.29e-42 155
Msa0734700 MtrunA17_Chr8g0382901 30.769 260 154 4 3 262 7 240 3.01e-36 137
Msa0734700 MtrunA17_Chr1g0167321 32.673 303 184 6 9 299 6 300 4.22e-42 151
Msa0734700 MtrunA17_Chr3g0101821 30.645 310 195 7 1 299 1 301 6.78e-42 151
Msa0734700 MtrunA17_Chr6g0466331 30.744 309 192 6 7 300 1 302 8.07e-42 150
Msa0734700 MtrunA17_Chr6g0465511 30.744 309 192 6 7 300 1 302 8.95e-42 150
Msa0734700 MtrunA17_Chr3g0101731 30.392 306 196 6 4 299 3 301 1.14e-41 150
Msa0734700 MtrunA17_Chr5g0445411 45.333 150 81 1 11 159 26 175 1.31e-41 142
Msa0734700 MtrunA17_Chr3g0101811 31.449 283 184 4 19 298 26 301 2.44e-41 149
Msa0734700 MtrunA17_Chr3g0101761 30.000 310 199 8 1 300 1 302 2.63e-41 149
Msa0734700 MtrunA17_Chr6g0463791 34.343 297 169 8 12 299 17 296 3.82e-41 149
Msa0734700 MtrunA17_Chr3g0101661 31.159 276 179 5 28 299 36 304 4.37e-41 149
Msa0734700 MtrunA17_Chr3g0101831 30.435 299 196 5 6 299 11 302 5.63e-41 148
Msa0734700 MtrunA17_Chr6g0484811 33.333 285 176 5 9 289 16 290 6.84e-41 148
Msa0734700 MtrunA17_Chr8g0357431 34.034 238 150 3 19 256 26 256 6.99e-41 148
Msa0734700 MtrunA17_Chr5g0446161 33.449 287 168 6 7 281 6 281 7.42e-41 148
Msa0734700 MtrunA17_Chr8g0357421 31.894 301 192 6 5 299 8 301 1.14e-40 147
Msa0734700 MtrunA17_Chr5g0446151 33.803 284 170 6 20 297 29 300 1.87e-40 147
Msa0734700 MtrunA17_Chr6g0484841 34.859 284 170 7 14 297 24 292 2.35e-40 147
Msa0734700 MtrunA17_Chr3g0101611 34.495 287 168 7 1 279 9 283 3.29e-40 146
Msa0734700 MtrunA17_Chr5g0445751 32.258 279 180 5 23 300 37 307 1.06e-39 141
Msa0734700 MtrunA17_Chr6g0463801 34.335 233 146 3 22 254 29 254 1.09e-39 145
Msa0734700 MtrunA17_Chr1g0162811 32.468 308 189 8 2 299 3 301 4.97e-39 143
Msa0734700 MtrunA17_Chr3g0101671 30.556 288 186 6 18 300 28 306 5.15e-39 143
Msa0734700 MtrunA17_Chr5g0430031 33.962 265 165 5 15 279 24 278 2.33e-38 141
Msa0734700 MtrunA17_Chr5g0430111 34.708 291 171 9 9 292 10 288 1.01e-37 138
Msa0734700 MtrunA17_Chr4g0058261 31.507 292 183 7 16 299 49 331 3.44e-37 139
Msa0734700 MtrunA17_Chr1g0174421 29.630 270 187 2 30 298 47 314 3.86e-37 135
Msa0734700 MtrunA17_Chr5g0405001 32.872 289 166 9 26 300 40 314 4.74e-37 138
Msa0734700 MtrunA17_Chr8g0372251 31.034 290 173 8 25 300 30 306 5.40e-37 137
Msa0734700 MtrunA17_Chr1g0174461 28.667 300 206 3 4 299 11 306 7.88e-37 137
Msa0734700 MtrunA17_Chr3g0084921 31.818 308 186 6 9 299 8 308 1.04e-36 137
Msa0734700 MtrunA17_Chr4g0046691 31.707 287 183 6 1 281 5 284 3.87e-36 131
Msa0734700 MtrunA17_Chr8g0390881 33.058 242 149 4 17 255 23 254 6.19e-36 135
Msa0734700 MtrunA17_Chr2g0280261 31.646 237 155 3 19 255 23 252 6.90e-36 134
Msa0734700 MtrunA17_Chr5g0430081 33.101 287 179 5 2 282 3 282 8.29e-36 134
Msa0734700 MtrunA17_Chr3g0094231 29.964 277 180 8 27 299 33 299 1.41e-35 134
Msa0734700 MtrunA17_Chr5g0401681 32.692 260 159 5 4 256 12 262 3.44e-35 132
Msa0734700 MtrunA17_Chr5g0430131 33.793 290 174 8 9 292 10 287 8.42e-35 132
Msa0734700 MtrunA17_Chr1g0174481 30.272 294 199 5 9 299 11 301 2.81e-34 130
Msa0734700 MtrunA17_Chr5g0401691 31.890 254 159 5 4 255 34 275 3.05e-34 130
Msa0734700 MtrunA17_Chr5g0430091 33.793 290 175 7 9 292 10 288 4.04e-34 130
Msa0734700 MtrunA17_Chr4g0035921 30.743 296 172 10 25 300 32 314 4.16e-34 130
Msa0734700 MtrunA17_Chr5g0430101 33.725 255 158 5 6 256 8 255 8.93e-34 129
Msa0734700 MtrunA17_Chr3g0094171 29.310 290 193 6 13 299 26 306 5.08e-33 127
Msa0734700 MtrunA17_Chr8g0344151 29.520 271 180 6 29 294 35 299 1.05e-32 126
Msa0734700 MtrunA17_Chr3g0086691 30.337 267 175 6 39 299 41 302 2.71e-32 125
Msa0734700 MtrunA17_Chr4g0030701 28.374 289 196 4 19 299 24 309 6.10e-32 124
Msa0734700 MtrunA17_Chr4g0020041 28.239 301 202 7 5 299 10 302 1.19e-31 123
Msa0734700 MtrunA17_Chr5g0431631 41.538 130 75 1 12 140 32 161 1.90e-31 115
Msa0734700 MtrunA17_Chr4g0057001 29.310 290 192 6 13 299 37 316 2.11e-31 122
Msa0734700 MtrunA17_Chr1g0174451 26.299 308 209 5 6 299 4 307 6.82e-31 121
Msa0734700 MtrunA17_Chr4g0046631 30.189 265 171 5 21 276 37 296 8.92e-31 120
Msa0734700 MtrunA17_Chr8g0344181 29.889 271 179 6 29 294 37 301 2.57e-30 119
Msa0734700 MtrunA17_Chr1g0174471 27.915 283 191 6 25 299 45 322 9.89e-30 118
Msa0734700 MtrunA17_Chr5g0430171 36.036 222 131 4 9 224 10 226 1.49e-29 112
Msa0734700 MtrunA17_Chr4g0052881 32.862 283 166 8 9 279 11 281 3.17e-29 116
Msa0734700 MtrunA17_Chr7g0258221 28.846 260 178 3 4 263 12 264 4.18e-29 116
Msa0734700 MtrunA17_Chr4g0052861 29.811 265 174 5 1 256 1 262 9.31e-29 115
Msa0734700 MtrunA17_Chr3g0101741 30.508 236 150 6 68 299 3 228 1.10e-28 114
Msa0734700 MtrunA17_Chr4g0061381 28.800 250 162 5 58 299 58 299 1.96e-28 114
Msa0734700 MtrunA17_Chr3g0086661 31.061 264 174 4 4 262 6 266 2.61e-28 114
Msa0734700 MtrunA17_Chr1g0174441 27.740 292 187 8 22 299 47 328 3.26e-28 113
Msa0734700 MtrunA17_Chr4g0052851 28.782 271 165 10 25 277 28 288 3.38e-28 113
Msa0734700 MtrunA17_Chr7g0235551 29.434 265 177 5 17 278 24 281 4.00e-28 113
Msa0734700 MtrunA17_Chr8g0344191 28.374 289 193 7 11 294 53 332 4.98e-28 113
Msa0734700 MtrunA17_Chr3g0086651 30.682 264 175 4 4 262 6 266 6.17e-28 112
Msa0734700 MtrunA17_Chr4g0046671 28.889 270 176 6 23 281 36 300 1.21e-27 109
Msa0734700 MtrunA17_Chr7g0224551 29.487 312 192 11 1 299 1 297 1.83e-27 111
Msa0734700 MtrunA17_Chr7g0224561 29.487 312 192 11 1 299 1 297 2.41e-27 111
Msa0734700 MtrunA17_Chr2g0296651 31.228 285 177 7 6 279 4 280 8.89e-27 109
Msa0734700 MtrunA17_Chr8g0339311 26.073 303 202 6 3 285 8 308 2.44e-26 108
Msa0734700 MtrunA17_Chr2g0304871 26.792 265 182 6 24 278 31 293 5.62e-26 107
Msa0734700 MtrunA17_Chr4g0053621 30.483 269 166 7 23 279 24 283 1.28e-25 106
Msa0734700 MtrunA17_Chr7g0255531 26.502 283 182 8 9 279 12 280 1.47e-25 105
Msa0734700 MtrunA17_Chr4g0030741 27.652 264 175 6 40 299 74 325 1.99e-25 103
Msa0734700 MtrunA17_Chr8g0362701 27.092 251 175 5 54 299 58 305 2.67e-25 105
Msa0734700 MtrunA17_Chr1g0160851 27.240 279 198 5 4 281 8 282 3.12e-25 105
Msa0734700 MtrunA17_Chr7g0254641 26.033 242 172 4 26 263 33 271 4.02e-25 104
Msa0734700 MtrunA17_Chr7g0258211 28.378 296 200 6 9 299 16 304 4.43e-25 104
Msa0734700 MtrunA17_Chr1g0207841 25.830 271 184 4 41 299 49 314 9.20e-25 103
Msa0734700 MtrunA17_Chr5g0395331 26.552 290 196 6 13 293 20 301 1.31e-24 103
Msa0734700 MtrunA17_Chr8g0351801 29.151 271 176 5 40 299 44 309 1.81e-24 102
Msa0734700 MtrunA17_Chr4g0030711 26.962 293 200 4 17 299 24 312 2.04e-24 102
Msa0734700 MtrunA17_Chr1g0164211 30.159 252 165 6 30 277 31 275 3.42e-24 102
Msa0734700 MtrunA17_Chr5g0445541 49.474 95 43 2 13 102 17 111 5.77e-24 94.7
Msa0734700 MtrunA17_Chr2g0310371 38.356 146 88 2 4 148 1 145 6.55e-24 95.1
Msa0734700 MtrunA17_Chr8g0355961 26.846 298 212 5 4 299 13 306 8.81e-24 100
Msa0734700 MtrunA17_Chr1g0200961 26.557 305 200 8 4 299 8 297 9.94e-24 100
Msa0734700 MtrunA17_Chr8g0362481 25.630 238 171 3 66 299 1 236 1.38e-23 100
Msa0734700 MtrunA17_Chr6g0466901 29.104 268 157 10 10 256 15 270 1.38e-23 100
Msa0734700 MtrunA17_Chr1g0207851 26.641 259 173 5 55 301 62 315 1.62e-23 99.0
Msa0734700 MtrunA17_Chr6g0451751 27.891 294 180 8 6 278 20 302 2.04e-23 100
Msa0734700 MtrunA17_Chr4g0017411 27.458 295 186 9 1 277 1 285 5.69e-23 98.6
Msa0734700 MtrunA17_Chr5g0402971 26.354 277 176 8 29 287 39 305 7.23e-23 96.3
Msa0734700 MtrunA17_Chr7g0246221 28.400 250 158 7 13 250 17 257 2.41e-22 96.7
Msa0734700 MtrunA17_Chr6g0451691 26.689 296 185 8 6 278 20 306 9.36e-22 95.1
Msa0734700 MtrunA17_Chr1g0205371 25.540 278 204 3 4 281 9 283 9.56e-22 95.1
Msa0734700 MtrunA17_Chr3g0117321 44.444 117 64 1 32 148 9 124 1.01e-21 88.6
Msa0734700 MtrunA17_Chr4g0046331 27.653 311 198 11 4 299 2 300 1.15e-21 94.7
Msa0734700 MtrunA17_Chr7g0265611 32.450 151 101 1 12 162 28 177 2.28e-21 94.0
Msa0734700 MtrunA17_Chr6g0451741 27.723 303 176 10 4 278 37 324 4.10e-21 93.2
Msa0734700 MtrunA17_Chr8g0356001 26.990 289 206 5 12 299 22 306 4.47e-21 93.2
Msa0734700 MtrunA17_Chr5g0395321 25.275 273 184 5 13 280 25 282 5.65e-21 92.8
Msa0734700 MtrunA17_Chr4g0046351 27.698 278 180 9 31 299 35 300 7.22e-21 92.4
Msa0734700 MtrunA17_Chr4g0008101 27.333 300 186 9 2 278 12 302 8.12e-21 92.4
Msa0734700 MtrunA17_Chr7g0246131 25.694 288 192 8 4 280 8 284 1.30e-20 91.7
Msa0734700 MtrunA17_Chr4g0056951 26.820 261 183 5 42 299 56 311 2.41e-20 90.9
Msa0734700 MtrunA17_Chr6g0466941 26.909 275 178 7 10 270 15 280 2.81e-20 90.9
Msa0734700 MtrunA17_Chr4g0039901 30.290 241 139 7 30 257 35 259 2.93e-20 90.5
Msa0734700 MtrunA17_Chr4g0039391 30.222 225 148 5 37 255 42 263 3.98e-20 90.5
Msa0734700 MtrunA17_Chr5g0432751 27.586 232 156 5 22 243 25 254 4.91e-20 90.1
Msa0734700 MtrunA17_Chr8g0339331 26.962 293 197 9 19 299 27 314 8.79e-20 89.4
Msa0734700 MtrunA17_Chr1g0205361 25.564 266 183 7 22 281 26 282 1.25e-19 89.0
Msa0734700 MtrunA17_Chr1g0213671 25.267 281 188 8 13 281 17 287 1.44e-19 88.6
Msa0734700 MtrunA17_Chr6g0458561 26.552 290 192 11 5 281 28 309 2.00e-19 88.2
Msa0734700 MtrunA17_Chr6g0484771 33.594 128 85 0 66 193 1 128 2.92e-19 82.4
Msa0734700 MtrunA17_Chr6g0451641 25.606 289 189 7 7 278 16 295 3.59e-19 87.4
Msa0734700 MtrunA17_Chr2g0314731 25.436 287 203 6 4 287 9 287 3.61e-19 87.4
Msa0734700 MtrunA17_Chr1g0200951 26.275 255 175 8 33 281 64 311 7.08e-19 86.7
Msa0734700 MtrunA17_Chr5g0445341 50.617 81 39 1 68 147 3 83 7.70e-19 79.7
Msa0734700 MtrunA17_Chr4g0046321 26.259 278 184 9 31 299 35 300 9.87e-19 86.3
Msa0734700 MtrunA17_Chr5g0431601 46.914 81 42 1 68 148 3 82 1.01e-18 79.0
Msa0734700 MtrunA17_Chr5g0395381 30.178 169 116 2 13 181 25 191 3.30e-18 84.7
Msa0734700 MtrunA17_Chr6g0451781 27.368 285 177 9 18 281 63 338 4.40e-18 84.3
Msa0734700 MtrunA17_Chr3g0107561 24.483 290 198 7 12 282 20 307 7.97e-18 82.4
Msa0734700 MtrunA17_Chr2g0296661 26.721 247 165 6 42 278 44 284 2.13e-17 82.4
Msa0734700 MtrunA17_Chr5g0430051 46.000 100 43 3 12 101 10 108 3.22e-17 76.3
Msa0734700 MtrunA17_Chr1g0210091 27.311 238 159 5 11 237 46 280 3.30e-17 81.6
Msa0734700 MtrunA17_Chr2g0314721 24.055 291 208 7 2 287 16 298 5.66e-17 80.9
Msa0734700 MtrunA17_Chr3g0105751 24.828 290 189 9 15 282 27 309 1.00e-16 79.7
Msa0734700 MtrunA17_Chr6g0451801 25.497 302 191 10 2 278 10 302 1.59e-16 78.6
Msa0734700 MtrunA17_Chr6g0451681 31.757 148 97 3 13 158 45 190 2.40e-16 79.0
Msa0734700 MtrunA17_Chr1g0198191 27.232 224 138 7 13 224 30 240 5.36e-16 78.2
Msa0734700 MtrunA17_Chr7g0246181 25.926 297 206 4 4 293 8 297 9.47e-16 77.4
Msa0734700 MtrunA17_Chr1g0176831 23.127 307 200 7 1 287 27 317 1.11e-15 77.0
Msa0734700 MtrunA17_Chr3g0082701 24.916 297 200 8 2 278 10 303 1.58e-15 76.6
Msa0734700 MtrunA17_Chr3g0107611 23.279 305 210 7 11 294 24 325 3.51e-15 75.9
Msa0734700 MtrunA17_Chr1g0197871 22.876 306 213 9 2 299 6 296 5.72e-15 75.1
Msa0734700 MtrunA17_Chr7g0246151 25.806 279 195 5 4 276 8 280 8.21e-15 74.7
Msa0734700 MtrunA17_Chr1g0197851 22.039 304 221 8 1 299 4 296 2.73e-14 72.8
Msa0734700 MtrunA17_Chr1g0197881 21.452 303 223 7 1 299 4 295 5.11e-14 72.0
Msa0734700 MtrunA17_Chr4g0076181 41.026 78 46 0 68 145 3 80 1.92e-13 67.0
Msa0734700 MtrunA17_Chr1g0197891 21.333 300 221 7 4 299 8 296 4.33e-13 69.3
Msa0734700 MtrunA17_Chr2g0334021 25.837 209 145 2 32 230 37 245 1.67e-12 67.8
Msa0734700 MtrunA17_Chr2g0310361 23.404 141 105 2 158 298 1 138 2.09e-12 63.5
Msa0734700 MtrunA17_Chr7g0246121 26.207 290 187 9 4 281 7 281 2.62e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0734700 AT4G31500.1 40.690 290 166 3 10 299 12 295 1.81e-69 224
Msa0734700 AT3G26300.1 37.793 299 178 5 4 300 6 298 5.64e-63 207
Msa0734700 AT5G57260.1 39.007 282 165 4 20 299 21 297 3.49e-61 202
Msa0734700 AT4G13770.1 36.610 295 180 5 6 299 8 296 1.59e-60 201
Msa0734700 AT5G25120.1 37.037 270 163 3 10 279 9 271 3.52e-59 197
Msa0734700 AT3G26310.1 37.667 300 175 6 3 300 8 297 1.61e-58 195
Msa0734700 AT5G25130.1 41.202 233 135 2 25 257 24 254 9.53e-58 193
Msa0734700 AT3G26290.1 36.296 270 165 3 32 299 33 297 1.39e-56 190
Msa0734700 AT3G26290.2 36.296 270 165 3 32 299 46 310 1.55e-56 190
Msa0734700 AT5G25180.1 35.836 293 173 6 14 300 11 294 2.08e-56 189
Msa0734700 AT5G25140.1 35.870 276 167 4 7 279 3 271 3.20e-56 189
Msa0734700 AT3G26330.1 37.132 272 164 3 31 300 32 298 4.43e-55 186
Msa0734700 AT3G26320.1 36.525 282 172 3 21 300 22 298 1.30e-54 185
Msa0734700 AT3G48280.1 36.000 300 180 5 1 300 1 288 1.44e-54 184
Msa0734700 AT3G26280.1 36.395 294 173 7 13 299 15 301 4.43e-53 181
Msa0734700 AT3G26280.2 36.395 294 173 7 13 299 32 318 6.13e-53 181
Msa0734700 AT1G13090.1 35.531 273 165 5 30 297 28 294 1.62e-52 174
Msa0734700 AT3G26190.1 37.154 253 153 4 30 280 28 276 3.35e-52 179
Msa0734700 AT1G13110.1 35.235 298 184 5 4 297 8 300 6.02e-52 178
Msa0734700 AT3G26200.1 35.714 280 172 5 22 297 20 295 7.99e-52 177
Msa0734700 AT3G44250.1 35.294 255 158 4 30 282 28 277 4.75e-51 176
Msa0734700 AT1G13090.2 35.531 273 165 5 30 297 28 294 9.59e-51 174
Msa0734700 AT1G13080.1 35.484 310 171 8 10 300 2 301 1.34e-50 174
Msa0734700 AT3G26210.1 36.742 264 156 6 39 297 40 297 1.76e-49 171
Msa0734700 AT3G26170.1 34.783 299 182 7 6 299 10 300 2.80e-49 171
Msa0734700 AT3G48320.1 35.000 300 181 6 1 300 4 289 8.09e-49 169
Msa0734700 AT3G48270.1 36.525 282 165 6 19 300 21 288 1.01e-48 169
Msa0734700 AT2G02580.1 36.396 283 173 3 20 300 21 298 2.25e-48 168
Msa0734700 AT3G53280.1 34.191 272 169 7 30 297 28 293 3.29e-48 168
Msa0734700 AT2G24180.1 36.264 273 168 3 29 299 35 303 1.06e-47 167
Msa0734700 AT3G26180.1 33.110 299 187 6 6 299 10 300 1.40e-46 164
Msa0734700 AT3G48290.1 36.396 283 166 6 18 300 22 290 3.94e-46 162
Msa0734700 AT3G53300.1 35.075 268 166 6 30 293 28 291 8.15e-46 162
Msa0734700 AT3G48290.2 36.655 281 164 6 18 298 22 288 1.31e-45 161
Msa0734700 AT3G26220.1 36.545 301 175 7 11 299 4 300 3.69e-45 160
Msa0734700 AT1G13100.1 34.848 264 161 5 39 297 37 294 3.96e-45 159
Msa0734700 AT5G24950.1 35.055 271 169 4 29 299 31 294 6.28e-45 159
Msa0734700 AT3G48310.1 35.231 281 168 6 20 300 23 289 7.77e-45 159
Msa0734700 AT3G48300.1 35.461 282 168 6 19 300 19 286 1.85e-43 155
Msa0734700 AT3G48300.2 35.461 282 168 6 19 300 21 288 1.91e-43 155
Msa0734700 AT4G13310.2 32.857 280 179 5 22 299 24 296 9.30e-43 151
Msa0734700 AT3G26830.1 32.333 300 184 8 4 297 8 294 3.40e-42 152
Msa0734700 AT3G26270.1 34.221 263 163 6 19 278 23 278 3.58e-42 152
Msa0734700 AT4G13310.1 32.857 280 179 5 22 299 24 296 5.77e-42 151
Msa0734700 AT1G11610.1 32.258 279 178 6 22 299 26 294 1.04e-41 150
Msa0734700 AT1G11610.2 32.258 279 178 6 22 299 26 294 1.22e-41 150
Msa0734700 AT3G26230.1 34.114 299 189 6 5 299 3 297 1.87e-41 150
Msa0734700 AT3G26150.1 31.908 304 196 6 1 299 3 300 2.02e-40 147
Msa0734700 AT4G20240.2 35.472 265 162 5 17 281 22 277 2.05e-40 145
Msa0734700 AT3G26160.1 31.802 283 184 5 22 299 22 300 2.83e-40 147
Msa0734700 AT4G20240.1 35.472 265 162 5 17 281 22 277 4.82e-40 145
Msa0734700 AT4G13290.1 33.840 263 163 6 22 281 25 279 1.82e-39 144
Msa0734700 AT2G30770.1 32.721 272 175 4 28 299 31 294 9.39e-39 142
Msa0734700 AT5G24960.2 33.692 279 178 4 21 299 24 295 6.45e-38 139
Msa0734700 AT2G30750.1 32.734 278 179 4 22 299 25 294 6.46e-38 140
Msa0734700 AT5G42590.1 33.007 306 183 6 1 297 1 293 1.02e-37 140
Msa0734700 AT5G24960.1 33.692 279 178 4 21 299 24 295 2.53e-37 139
Msa0734700 AT5G06900.1 30.037 273 182 5 30 299 34 300 3.87e-33 127
Msa0734700 AT5G04330.1 31.915 282 170 10 31 300 33 304 2.09e-32 125
Msa0734700 AT5G35715.1 30.000 230 154 4 68 293 3 229 5.06e-32 123
Msa0734700 AT3G53290.1 32.273 220 138 5 84 297 11 225 2.50e-31 121
Msa0734700 AT5G07990.1 28.713 303 196 11 5 299 8 298 3.16e-31 122
Msa0734700 AT4G12300.1 27.090 299 207 6 4 299 20 310 6.75e-31 121
Msa0734700 AT4G22710.1 33.208 265 167 5 39 299 62 320 9.91e-31 121
Msa0734700 AT4G22690.1 33.898 295 184 6 9 299 64 351 2.33e-30 120
Msa0734700 AT4G36220.1 33.484 221 136 6 38 257 48 258 1.47e-29 117
Msa0734700 AT2G42250.1 27.425 299 201 4 8 300 19 307 1.72e-29 117
Msa0734700 AT3G25180.2 26.690 281 197 5 4 278 10 287 1.36e-28 113
Msa0734700 AT5G57220.1 30.385 260 164 8 4 255 5 255 1.70e-28 114
Msa0734700 AT5G06905.1 25.086 291 213 3 9 298 10 296 1.75e-28 114
Msa0734700 AT3G25180.1 26.690 281 197 5 4 278 10 287 4.39e-28 113
Msa0734700 AT5G67310.1 31.579 285 182 10 9 287 21 298 5.38e-28 113
Msa0734700 AT4G12320.1 27.027 259 173 5 6 255 15 266 2.76e-27 111
Msa0734700 AT2G45560.2 27.682 289 192 7 5 281 9 292 7.48e-27 107
Msa0734700 AT5G44620.1 29.066 289 200 3 13 299 29 314 1.54e-26 109
Msa0734700 AT2G45560.1 27.682 289 192 7 5 281 9 292 5.45e-26 107
Msa0734700 AT5G10610.1 29.150 247 166 5 13 255 16 257 6.51e-26 107
Msa0734700 AT4G37310.1 28.736 261 175 7 5 256 4 262 2.68e-25 105
Msa0734700 AT5G10600.1 28.992 238 155 4 26 255 42 273 2.86e-25 105
Msa0734700 AT1G74550.1 27.437 277 183 6 25 299 22 282 3.41e-25 105
Msa0734700 AT4G37430.1 27.099 262 174 6 5 255 5 260 3.93e-25 105
Msa0734700 AT2G23190.1 28.667 300 185 10 7 290 50 336 1.88e-24 103
Msa0734700 AT2G45550.1 26.087 276 192 6 19 287 27 297 6.02e-24 101
Msa0734700 AT5G36220.1 30.651 261 158 9 9 255 14 265 6.07e-24 101
Msa0734700 AT4G20235.1 33.080 263 139 9 4 258 3 236 6.27e-24 100
Msa0734700 AT4G15360.1 27.703 296 201 6 4 294 15 302 6.35e-24 101
Msa0734700 AT2G23220.1 31.136 273 167 8 29 290 45 307 6.36e-24 101
Msa0734700 AT2G45560.3 28.194 227 155 4 5 224 9 234 1.99e-23 96.7
Msa0734700 AT4G37410.1 28.302 265 165 9 4 255 5 257 3.99e-23 99.4
Msa0734700 AT1G50520.1 27.820 266 176 6 40 298 53 309 4.07e-23 99.4
Msa0734700 AT4G37400.1 30.651 261 162 9 4 255 5 255 1.76e-22 97.4
Msa0734700 AT3G20940.1 24.653 288 210 3 14 299 26 308 1.92e-22 97.4
Msa0734700 AT3G53305.1 32.143 168 112 2 68 233 3 170 4.24e-22 94.7
Msa0734700 AT4G37340.1 28.014 282 180 8 12 279 6 278 5.48e-22 96.3
Msa0734700 AT3G20110.1 26.936 297 205 6 4 296 13 301 7.41e-22 95.9
Msa0734700 AT4G37320.1 28.794 257 166 7 11 255 8 259 7.74e-22 95.5
Msa0734700 AT3G20090.2 26.518 313 199 5 1 299 14 309 9.18e-22 95.5
Msa0734700 AT2G40890.1 26.357 258 177 6 31 280 28 280 1.06e-21 95.5
Msa0734700 AT3G20140.1 26.644 289 198 6 16 299 28 307 2.11e-21 94.4
Msa0734700 AT4G37370.1 28.470 281 176 9 9 279 12 277 3.80e-21 93.6
Msa0734700 AT5G09970.1 25.524 286 196 10 4 281 43 319 5.57e-21 93.2
Msa0734700 AT5G04630.1 29.258 229 143 7 6 224 14 233 5.71e-21 93.2
Msa0734700 AT4G37360.1 29.134 254 164 7 9 254 12 257 6.89e-21 92.8
Msa0734700 AT2G45570.1 27.273 286 191 7 3 278 11 289 1.06e-20 92.4
Msa0734700 AT4G15330.1 26.821 302 198 7 4 297 15 301 1.07e-20 92.4
Msa0734700 AT3G52970.2 31.210 157 104 3 23 177 29 183 1.52e-20 92.0
Msa0734700 AT3G20950.1 23.841 302 208 5 9 299 21 311 1.60e-20 92.0
Msa0734700 AT4G37330.1 27.097 310 203 10 1 300 3 299 1.90e-20 91.7
Msa0734700 AT4G12330.1 25.000 252 174 6 55 299 70 313 2.04e-20 91.7
Msa0734700 AT3G10560.1 31.674 221 134 7 12 224 30 241 2.18e-20 91.7
Msa0734700 AT4G31970.1 25.000 284 195 6 11 278 12 293 2.55e-20 91.3
Msa0734700 AT3G52970.1 29.444 180 122 4 23 199 29 206 7.56e-20 90.1
Msa0734700 AT1G01280.1 25.681 257 166 7 39 281 41 286 9.17e-20 89.7
Msa0734700 AT1G74540.1 31.073 177 111 3 28 197 25 197 3.83e-19 87.8
Msa0734700 AT2G25160.1 25.559 313 209 8 1 299 9 311 3.54e-18 85.1
Msa0734700 AT2G25160.2 25.559 313 209 8 1 299 9 311 3.78e-18 84.7
Msa0734700 AT4G31940.1 30.366 191 121 5 11 191 12 200 1.26e-17 83.6
Msa0734700 AT1G13710.1 26.136 264 179 8 24 281 47 300 1.65e-17 83.2
Msa0734700 AT4G12310.1 25.571 219 158 3 39 255 53 268 4.79e-17 81.6
Msa0734700 AT3G61040.2 22.711 273 196 5 31 299 34 295 5.85e-17 80.9
Msa0734700 AT2G46660.1 23.346 257 184 7 24 278 64 309 8.12e-17 80.9
Msa0734700 AT3G61040.1 22.711 273 196 5 31 299 34 295 1.39e-16 80.1
Msa0734700 AT3G28740.1 28.151 238 158 6 26 255 35 267 1.52e-16 80.1
Msa0734700 AT1G58260.1 25.086 291 196 7 5 281 17 299 2.16e-16 79.7
Msa0734700 AT1G13080.2 28.125 160 106 4 146 300 28 183 3.83e-16 78.6
Msa0734700 AT1G16410.2 24.585 301 195 8 8 280 11 307 4.00e-16 78.6
Msa0734700 AT1G11600.1 23.024 291 207 9 1 279 3 288 4.29e-16 79.0
Msa0734700 AT2G22330.2 24.183 306 216 7 5 297 53 355 4.40e-16 79.0
Msa0734700 AT2G22330.1 24.183 306 216 7 5 297 30 332 4.79e-16 78.6
Msa0734700 AT1G16410.1 24.585 301 195 8 8 280 11 307 5.03e-16 78.6
Msa0734700 AT2G05180.1 27.511 229 143 4 4 221 16 232 6.55e-16 78.2
Msa0734700 AT1G33720.1 22.742 299 206 8 9 293 17 304 6.97e-16 78.2
Msa0734700 AT1G50560.1 27.922 308 193 9 4 296 15 308 9.58e-16 77.8
Msa0734700 AT3G20130.1 22.968 283 174 6 37 299 49 307 4.40e-15 75.9
Msa0734700 AT1G16400.1 23.920 301 195 9 9 280 11 306 5.60e-15 75.5
Msa0734700 AT4G39950.1 23.226 310 213 7 5 297 29 330 6.00e-15 75.5
Msa0734700 AT4G39950.2 23.226 310 213 7 5 297 69 370 7.39e-15 75.1
Msa0734700 AT3G20960.2 27.852 298 197 7 4 294 16 302 8.72e-15 75.1
Msa0734700 AT2G27000.1 23.596 267 193 4 37 299 46 305 8.80e-15 75.1
Msa0734700 AT3G20080.2 25.623 281 198 4 18 294 30 303 8.91e-15 75.1
Msa0734700 AT3G20080.1 25.623 281 198 4 18 294 30 303 8.91e-15 75.1
Msa0734700 AT1G74110.1 23.077 286 200 9 9 281 43 321 1.12e-14 74.7
Msa0734700 AT3G61880.1 21.705 258 189 6 25 278 61 309 2.32e-14 73.6
Msa0734700 AT3G61880.2 21.705 258 189 6 25 278 61 309 2.44e-14 73.6
Msa0734700 AT5G42580.1 22.672 247 171 4 54 298 63 291 3.55e-14 73.2
Msa0734700 AT3G20120.4 26.333 300 202 8 4 294 12 301 3.72e-14 73.2
Msa0734700 AT4G31950.1 24.390 287 184 9 10 278 11 282 4.19e-14 72.8
Msa0734700 AT1G79370.1 23.948 309 199 10 5 281 12 316 6.85e-14 72.4
Msa0734700 AT2G30490.1 24.742 194 138 3 37 224 40 231 8.76e-14 72.0
Msa0734700 AT3G20100.1 24.834 302 214 7 4 299 13 307 1.43e-13 71.2
Msa0734700 AT5G47990.1 24.667 300 215 4 4 299 16 308 1.85e-13 70.9
Msa0734700 AT5G05260.2 23.600 250 160 6 2 224 5 250 6.18e-13 69.3
Msa0734700 AT5G05260.1 23.600 250 160 6 2 224 5 250 6.95e-13 69.3
Msa0734700 AT3G32047.1 25.694 288 204 5 11 296 24 303 1.39e-12 68.2
Msa0734700 AT4G20235.2 35.294 102 64 2 157 258 3 102 1.69e-12 64.3
Msa0734700 AT3G26180.2 35.965 114 66 3 6 117 10 118 1.77e-12 67.4
Msa0734700 AT2G14100.1 24.585 301 216 6 3 299 15 308 2.09e-12 67.8
Msa0734700 AT5G04660.1 29.185 233 137 9 9 225 17 237 9.49e-11 62.8

Find 52 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGAAATTGTTCAAGATTT+TGG 0.121944 5_1:-49040612 Msa0734700:CDS
TTTGCTTTGAACCAAGTTTA+AGG 0.194818 5_1:+49041125 None:intergenic
TGTGAATACACGCATATTTA+TGG 0.202411 5_1:+49041405 None:intergenic
GGAGGCAACTTCTTTCTATT+TGG 0.212612 5_1:+49040551 None:intergenic
AGTTGTTTCATCAGCTAAAA+TGG 0.252500 5_1:-49041098 Msa0734700:CDS
CCAATGAAAGGAAGACCTTT+AGG 0.277670 5_1:+49041226 None:intergenic
CCAAGTTTAAGGGAGATTAT+AGG 0.296621 5_1:+49041136 None:intergenic
CCTAAAGGTCTTCCTTTCAT+TGG 0.305559 5_1:-49041226 Msa0734700:CDS
TTTCACCATATAGAGAATAT+TGG 0.311740 5_1:-49040979 Msa0734700:CDS
TATGAACTCTCAAAGAAATA+TGG 0.312482 5_1:-49041160 Msa0734700:CDS
ATATTTATGGAAAATATTAA+TGG 0.312763 5_1:+49041418 None:intergenic
CACGTTTGACACTAAGAAAA+TGG 0.312826 5_1:+49040930 None:intergenic
TGTCTCCAATATTCTCTATA+TGG 0.321412 5_1:+49040974 None:intergenic
ATGCAAATTCACAACTTTGT+TGG 0.350003 5_1:+49040835 None:intergenic
CAAGTTTAAGGGAGATTATA+GGG 0.360247 5_1:+49041137 None:intergenic
GTAGGACCGCGTTCGGTAGA+AGG 0.381061 5_1:-49040778 Msa0734700:CDS
TTGCTTTGAACCAAGTTTAA+GGG 0.402592 5_1:+49041126 None:intergenic
GAGTTGAGAGAGGCAACATT+TGG 0.420818 5_1:+49041460 None:intergenic
AAGAATAGCAAGAGAGCAAA+AGG 0.433454 5_1:+49041304 None:intergenic
ATCATTCTTCAATTCAATCA+AGG 0.446285 5_1:+49040505 None:intergenic
CCTATAATCTCCCTTAAACT+TGG 0.448675 5_1:-49041136 Msa0734700:CDS
TGATTTGCTTAAAGAAGCTC+AGG 0.463331 5_1:-49040720 Msa0734700:CDS
CAACTTGATAGTTCAGCTCT+TGG 0.470356 5_1:-49041193 Msa0734700:CDS
GAATGATCCTTACTGCTCAA+TGG 0.492636 5_1:-49040489 Msa0734700:CDS
TCAACAATCCCTCCAACAAA+AGG 0.502167 5_1:+49040662 None:intergenic
CATCATATGAGAATTTCATA+TGG 0.503009 5_1:+49041017 None:intergenic
TAACAAGCGCGGTAGTTTGT+AGG 0.503454 5_1:-49040796 Msa0734700:CDS
TTGAGATCCATTGAGCAGTA+AGG 0.504461 5_1:+49040482 None:intergenic
TGGTGTAAGTTTCCAATGAA+AGG 0.506852 5_1:+49041214 None:intergenic
CATATGAAATTCTCATATGA+TGG 0.513023 5_1:-49041016 Msa0734700:CDS
ACTCTTCCACCAGGTCCTAA+AGG 0.514942 5_1:-49041241 Msa0734700:CDS
TTCATATGGCTGATTAAAGC+GGG 0.519256 5_1:+49041031 None:intergenic
GGGATTGTTGATAAGTTCAC+CGG 0.528273 5_1:-49040650 Msa0734700:CDS
CTCAAGACGACTCATCAATC+CGG 0.536653 5_1:+49040631 None:intergenic
GTAGTTTGTAGGACCGCGTT+CGG 0.540541 5_1:-49040785 Msa0734700:CDS
GACACTAAGAAAATGGATGA+AGG 0.548589 5_1:+49040937 None:intergenic
GCAAAAGGTAAAAGAACAAG+AGG 0.550795 5_1:+49041319 None:intergenic
ACACATCAAACCCTTGATCA+TGG 0.552900 5_1:-49040453 Msa0734700:intron
TATGGAAAATATTAATGGAG+TGG 0.569855 5_1:+49041423 None:intergenic
TAGGGATAGCTATTCAGCTA+TGG 0.578302 5_1:+49041364 None:intergenic
AAAACATTAACCATGATCAA+GGG 0.579874 5_1:+49040443 None:intergenic
TTTCATATGGCTGATTAAAG+CGG 0.609568 5_1:+49041030 None:intergenic
AAAGGAAGACCTTTAGGACC+TGG 0.613036 5_1:+49041232 None:intergenic
CAAGAGCTGAACTATCAAGT+TGG 0.614549 5_1:+49041194 None:intergenic
ATTACATCATCTTCATGAGG+AGG 0.635107 5_1:+49040533 None:intergenic
TATGGCTGATTAAAGCGGGT+CGG 0.638344 5_1:+49041035 None:intergenic
TCAATTACATCATCTTCATG+AGG 0.650078 5_1:+49040530 None:intergenic
GGAAGACCTTTAGGACCTGG+TGG 0.650927 5_1:+49041235 None:intergenic
TGCTATGTCAGAGTTGAGAG+AGG 0.653630 5_1:+49041450 None:intergenic
TTCAAACCTTCTACCGAACG+CGG 0.655606 5_1:+49040772 None:intergenic
AAATCAACAACTCTTCCACC+AGG 0.681204 5_1:-49041250 Msa0734700:CDS
TCTCATGTGTCTAACAAGCG+CGG 0.701793 5_1:-49040807 Msa0734700:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTTATGGAAAATATTAA+TGG + chr5_1:49040396-49040415 None:intergenic 10.0%
!! ATATTTATGGAAAATATTAA+TGG + chr5_1:49040396-49040415 None:intergenic 10.0%
!!! ATGTTTTTGTTGATTAATTA+GGG + chr5_1:49040468-49040487 None:intergenic 15.0%
!!! ATGTTTTTGTTGATTAATTA+GGG + chr5_1:49040468-49040487 None:intergenic 15.0%
!!! CATGTTTTTGTTGATTAATT+AGG + chr5_1:49040469-49040488 None:intergenic 20.0%
!! TAAAAATTGAACCAAGATTT+AGG + chr5_1:49041431-49041450 None:intergenic 20.0%
!!! CATGTTTTTGTTGATTAATT+AGG + chr5_1:49040469-49040488 None:intergenic 20.0%
!! TAAAAATTGAACCAAGATTT+AGG + chr5_1:49041431-49041450 None:intergenic 20.0%
! TATGGAAAATATTAATGGAG+TGG + chr5_1:49040391-49040410 None:intergenic 25.0%
! TATGAACTCTCAAAGAAATA+TGG - chr5_1:49040651-49040670 Msa0734700:CDS 25.0%
! CATCATATGAGAATTTCATA+TGG + chr5_1:49040797-49040816 None:intergenic 25.0%
! CATATGAAATTCTCATATGA+TGG - chr5_1:49040795-49040814 Msa0734700:CDS 25.0%
! TTTCACCATATAGAGAATAT+TGG - chr5_1:49040832-49040851 Msa0734700:CDS 25.0%
!! TGAGAAATTGTTCAAGATTT+TGG - chr5_1:49041199-49041218 Msa0734700:CDS 25.0%
!! AAATTGTTCAAGATTTTGGA+TGG - chr5_1:49041203-49041222 Msa0734700:CDS 25.0%
! ATCATTCTTCAATTCAATCA+AGG + chr5_1:49041309-49041328 None:intergenic 25.0%
! AAAACATTAACCATGATCAA+GGG + chr5_1:49041371-49041390 None:intergenic 25.0%
! AAAAACATTAACCATGATCA+AGG + chr5_1:49041372-49041391 None:intergenic 25.0%
! TATGGAAAATATTAATGGAG+TGG + chr5_1:49040391-49040410 None:intergenic 25.0%
! TATGAACTCTCAAAGAAATA+TGG - chr5_1:49040651-49040670 Msa0734700:CDS 25.0%
! CATCATATGAGAATTTCATA+TGG + chr5_1:49040797-49040816 None:intergenic 25.0%
! CATATGAAATTCTCATATGA+TGG - chr5_1:49040795-49040814 Msa0734700:CDS 25.0%
! TTTCACCATATAGAGAATAT+TGG - chr5_1:49040832-49040851 Msa0734700:CDS 25.0%
!! TGAGAAATTGTTCAAGATTT+TGG - chr5_1:49041199-49041218 Msa0734700:CDS 25.0%
!! AAATTGTTCAAGATTTTGGA+TGG - chr5_1:49041203-49041222 Msa0734700:CDS 25.0%
! ATCATTCTTCAATTCAATCA+AGG + chr5_1:49041309-49041328 None:intergenic 25.0%
! AAAACATTAACCATGATCAA+GGG + chr5_1:49041371-49041390 None:intergenic 25.0%
! AAAAACATTAACCATGATCA+AGG + chr5_1:49041372-49041391 None:intergenic 25.0%
TGTGAATACACGCATATTTA+TGG + chr5_1:49040409-49040428 None:intergenic 30.0%
CAAGTTTAAGGGAGATTATA+GGG + chr5_1:49040677-49040696 None:intergenic 30.0%
! TTGCTTTGAACCAAGTTTAA+GGG + chr5_1:49040688-49040707 None:intergenic 30.0%
! TTTGCTTTGAACCAAGTTTA+AGG + chr5_1:49040689-49040708 None:intergenic 30.0%
! AGTTGTTTCATCAGCTAAAA+TGG - chr5_1:49040713-49040732 Msa0734700:CDS 30.0%
! GTGTGTTTTCATTACTTGTT+TGG + chr5_1:49040739-49040758 None:intergenic 30.0%
TTTCATATGGCTGATTAAAG+CGG + chr5_1:49040784-49040803 None:intergenic 30.0%
CTCTATATGGTGAAAAAAAC+TGG + chr5_1:49040827-49040846 None:intergenic 30.0%
TGTCTCCAATATTCTCTATA+TGG + chr5_1:49040840-49040859 None:intergenic 30.0%
!!! ATGGATGAAGGAAAGTTTTT+TGG + chr5_1:49040865-49040884 None:intergenic 30.0%
ATGCAAATTCACAACTTTGT+TGG + chr5_1:49040979-49040998 None:intergenic 30.0%
! TCAGATTATTTGCCTTTTGT+TGG - chr5_1:49041137-49041156 Msa0734700:CDS 30.0%
! ATTATTTGCCTTTTGTTGGA+GGG - chr5_1:49041141-49041160 Msa0734700:CDS 30.0%
TCAATTACATCATCTTCATG+AGG + chr5_1:49041284-49041303 None:intergenic 30.0%
CTCTTATTAAGCCTAAATCT+TGG - chr5_1:49041417-49041436 Msa0734700:five_prime_UTR 30.0%
TGTGAATACACGCATATTTA+TGG + chr5_1:49040409-49040428 None:intergenic 30.0%
CAAGTTTAAGGGAGATTATA+GGG + chr5_1:49040677-49040696 None:intergenic 30.0%
! TTGCTTTGAACCAAGTTTAA+GGG + chr5_1:49040688-49040707 None:intergenic 30.0%
! TTTGCTTTGAACCAAGTTTA+AGG + chr5_1:49040689-49040708 None:intergenic 30.0%
! AGTTGTTTCATCAGCTAAAA+TGG - chr5_1:49040713-49040732 Msa0734700:CDS 30.0%
! GTGTGTTTTCATTACTTGTT+TGG + chr5_1:49040739-49040758 None:intergenic 30.0%
TTTCATATGGCTGATTAAAG+CGG + chr5_1:49040784-49040803 None:intergenic 30.0%
CTCTATATGGTGAAAAAAAC+TGG + chr5_1:49040827-49040846 None:intergenic 30.0%
TGTCTCCAATATTCTCTATA+TGG + chr5_1:49040840-49040859 None:intergenic 30.0%
!!! ATGGATGAAGGAAAGTTTTT+TGG + chr5_1:49040865-49040884 None:intergenic 30.0%
ATGCAAATTCACAACTTTGT+TGG + chr5_1:49040979-49040998 None:intergenic 30.0%
! TCAGATTATTTGCCTTTTGT+TGG - chr5_1:49041137-49041156 Msa0734700:CDS 30.0%
! ATTATTTGCCTTTTGTTGGA+GGG - chr5_1:49041141-49041160 Msa0734700:CDS 30.0%
TCAATTACATCATCTTCATG+AGG + chr5_1:49041284-49041303 None:intergenic 30.0%
CTCTTATTAAGCCTAAATCT+TGG - chr5_1:49041417-49041436 Msa0734700:five_prime_UTR 30.0%
GCAAAAGGTAAAAGAACAAG+AGG + chr5_1:49040495-49040514 None:intergenic 35.0%
AAGAATAGCAAGAGAGCAAA+AGG + chr5_1:49040510-49040529 None:intergenic 35.0%
TGGTGTAAGTTTCCAATGAA+AGG + chr5_1:49040600-49040619 None:intergenic 35.0%
CCAAGTTTAAGGGAGATTAT+AGG + chr5_1:49040678-49040697 None:intergenic 35.0%
CCTATAATCTCCCTTAAACT+TGG - chr5_1:49040675-49040694 Msa0734700:CDS 35.0%
TTCATATGGCTGATTAAAGC+GGG + chr5_1:49040783-49040802 None:intergenic 35.0%
GACACTAAGAAAATGGATGA+AGG + chr5_1:49040877-49040896 None:intergenic 35.0%
CACGTTTGACACTAAGAAAA+TGG + chr5_1:49040884-49040903 None:intergenic 35.0%
!! TGATTTGCTTAAAGAAGCTC+AGG - chr5_1:49041091-49041110 Msa0734700:CDS 35.0%
! GATTATTTGCCTTTTGTTGG+AGG - chr5_1:49041140-49041159 Msa0734700:CDS 35.0%
ATTACATCATCTTCATGAGG+AGG + chr5_1:49041281-49041300 None:intergenic 35.0%
GCAAAAGGTAAAAGAACAAG+AGG + chr5_1:49040495-49040514 None:intergenic 35.0%
AAGAATAGCAAGAGAGCAAA+AGG + chr5_1:49040510-49040529 None:intergenic 35.0%
TGGTGTAAGTTTCCAATGAA+AGG + chr5_1:49040600-49040619 None:intergenic 35.0%
CCAAGTTTAAGGGAGATTAT+AGG + chr5_1:49040678-49040697 None:intergenic 35.0%
CCTATAATCTCCCTTAAACT+TGG - chr5_1:49040675-49040694 Msa0734700:CDS 35.0%
TTCATATGGCTGATTAAAGC+GGG + chr5_1:49040783-49040802 None:intergenic 35.0%
GACACTAAGAAAATGGATGA+AGG + chr5_1:49040877-49040896 None:intergenic 35.0%
CACGTTTGACACTAAGAAAA+TGG + chr5_1:49040884-49040903 None:intergenic 35.0%
!! TGATTTGCTTAAAGAAGCTC+AGG - chr5_1:49041091-49041110 Msa0734700:CDS 35.0%
! GATTATTTGCCTTTTGTTGG+AGG - chr5_1:49041140-49041159 Msa0734700:CDS 35.0%
ATTACATCATCTTCATGAGG+AGG + chr5_1:49041281-49041300 None:intergenic 35.0%
TAGGGATAGCTATTCAGCTA+TGG + chr5_1:49040450-49040469 None:intergenic 40.0%
AAATCAACAACTCTTCCACC+AGG - chr5_1:49040561-49040580 Msa0734700:CDS 40.0%
CCAATGAAAGGAAGACCTTT+AGG + chr5_1:49040588-49040607 None:intergenic 40.0%
CCTAAAGGTCTTCCTTTCAT+TGG - chr5_1:49040585-49040604 Msa0734700:CDS 40.0%
CAAGAGCTGAACTATCAAGT+TGG + chr5_1:49040620-49040639 None:intergenic 40.0%
! CAACTTGATAGTTCAGCTCT+TGG - chr5_1:49040618-49040637 Msa0734700:CDS 40.0%
! ACGTGTCGTAATGTTTTCCT+CGG - chr5_1:49040899-49040918 Msa0734700:CDS 40.0%
! TGTCTCGTATTTTCTAACCG+AGG + chr5_1:49040919-49040938 None:intergenic 40.0%
TCAACAATCCCTCCAACAAA+AGG + chr5_1:49041152-49041171 None:intergenic 40.0%
! GGGATTGTTGATAAGTTCAC+CGG - chr5_1:49041161-49041180 Msa0734700:CDS 40.0%
GGAGGCAACTTCTTTCTATT+TGG + chr5_1:49041263-49041282 None:intergenic 40.0%
GAATGATCCTTACTGCTCAA+TGG - chr5_1:49041322-49041341 Msa0734700:CDS 40.0%
TTGAGATCCATTGAGCAGTA+AGG + chr5_1:49041332-49041351 None:intergenic 40.0%
ACACATCAAACCCTTGATCA+TGG - chr5_1:49041358-49041377 Msa0734700:five_prime_UTR 40.0%
TAGGGATAGCTATTCAGCTA+TGG + chr5_1:49040450-49040469 None:intergenic 40.0%
AAATCAACAACTCTTCCACC+AGG - chr5_1:49040561-49040580 Msa0734700:CDS 40.0%
CCAATGAAAGGAAGACCTTT+AGG + chr5_1:49040588-49040607 None:intergenic 40.0%
CCTAAAGGTCTTCCTTTCAT+TGG - chr5_1:49040585-49040604 Msa0734700:CDS 40.0%
CAAGAGCTGAACTATCAAGT+TGG + chr5_1:49040620-49040639 None:intergenic 40.0%
! CAACTTGATAGTTCAGCTCT+TGG - chr5_1:49040618-49040637 Msa0734700:CDS 40.0%
! ACGTGTCGTAATGTTTTCCT+CGG - chr5_1:49040899-49040918 Msa0734700:CDS 40.0%
! TGTCTCGTATTTTCTAACCG+AGG + chr5_1:49040919-49040938 None:intergenic 40.0%
TCAACAATCCCTCCAACAAA+AGG + chr5_1:49041152-49041171 None:intergenic 40.0%
! GGGATTGTTGATAAGTTCAC+CGG - chr5_1:49041161-49041180 Msa0734700:CDS 40.0%
GGAGGCAACTTCTTTCTATT+TGG + chr5_1:49041263-49041282 None:intergenic 40.0%
GAATGATCCTTACTGCTCAA+TGG - chr5_1:49041322-49041341 Msa0734700:CDS 40.0%
TTGAGATCCATTGAGCAGTA+AGG + chr5_1:49041332-49041351 None:intergenic 40.0%
ACACATCAAACCCTTGATCA+TGG - chr5_1:49041358-49041377 Msa0734700:five_prime_UTR 40.0%
TGCTATGTCAGAGTTGAGAG+AGG + chr5_1:49040364-49040383 None:intergenic 45.0%
!! AAAGGAAGACCTTTAGGACC+TGG + chr5_1:49040582-49040601 None:intergenic 45.0%
TATGGCTGATTAAAGCGGGT+CGG + chr5_1:49040779-49040798 None:intergenic 45.0%
TCTCATGTGTCTAACAAGCG+CGG - chr5_1:49041004-49041023 Msa0734700:CDS 45.0%
! TAACAAGCGCGGTAGTTTGT+AGG - chr5_1:49041015-49041034 Msa0734700:CDS 45.0%
TTCAAACCTTCTACCGAACG+CGG + chr5_1:49041042-49041061 None:intergenic 45.0%
CTCAAGACGACTCATCAATC+CGG + chr5_1:49041183-49041202 None:intergenic 45.0%
TGCTATGTCAGAGTTGAGAG+AGG + chr5_1:49040364-49040383 None:intergenic 45.0%
!! AAAGGAAGACCTTTAGGACC+TGG + chr5_1:49040582-49040601 None:intergenic 45.0%
TATGGCTGATTAAAGCGGGT+CGG + chr5_1:49040779-49040798 None:intergenic 45.0%
TCTCATGTGTCTAACAAGCG+CGG - chr5_1:49041004-49041023 Msa0734700:CDS 45.0%
! TAACAAGCGCGGTAGTTTGT+AGG - chr5_1:49041015-49041034 Msa0734700:CDS 45.0%
TTCAAACCTTCTACCGAACG+CGG + chr5_1:49041042-49041061 None:intergenic 45.0%
CTCAAGACGACTCATCAATC+CGG + chr5_1:49041183-49041202 None:intergenic 45.0%
ACTCTTCCACCAGGTCCTAA+AGG - chr5_1:49040570-49040589 Msa0734700:CDS 50.0%
! GTAGTTTGTAGGACCGCGTT+CGG - chr5_1:49041026-49041045 Msa0734700:CDS 50.0%
ACTCTTCCACCAGGTCCTAA+AGG - chr5_1:49040570-49040589 Msa0734700:CDS 50.0%
! GTAGTTTGTAGGACCGCGTT+CGG - chr5_1:49041026-49041045 Msa0734700:CDS 50.0%
!! GGAAGACCTTTAGGACCTGG+TGG + chr5_1:49040579-49040598 None:intergenic 55.0%
!! GGAAGACCTTTAGGACCTGG+TGG + chr5_1:49040579-49040598 None:intergenic 55.0%
GTAGGACCGCGTTCGGTAGA+AGG - chr5_1:49041033-49041052 Msa0734700:CDS 60.0%
GTAGGACCGCGTTCGGTAGA+AGG - chr5_1:49041033-49041052 Msa0734700:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 49040352 49041481 49040352 ID=Msa0734700;Name=Msa0734700
chr5_1 mRNA 49040352 49041481 49040352 ID=Msa0734700-mRNA-1;Parent=Msa0734700;Name=Msa0734700-mRNA-1;_AED=0.23;_eAED=0.23;_QI=134|0|0.5|0.5|0|0.5|2|0|301
chr5_1 exon 49040352 49040363 49040352 ID=Msa0734700-mRNA-1:exon:13987;Parent=Msa0734700-mRNA-1
chr5_1 exon 49040454 49041481 49040454 ID=Msa0734700-mRNA-1:exon:13986;Parent=Msa0734700-mRNA-1
chr5_1 five_prime_UTR 49041348 49041481 49041348 ID=Msa0734700-mRNA-1:five_prime_utr;Parent=Msa0734700-mRNA-1
chr5_1 CDS 49040454 49041347 49040454 ID=Msa0734700-mRNA-1:cds;Parent=Msa0734700-mRNA-1
chr5_1 CDS 49040352 49040363 49040352 ID=Msa0734700-mRNA-1:cds;Parent=Msa0734700-mRNA-1
Gene Sequence

>Msa0734700

ATGTCACCTCTTGTTCTTTTACCTTTTGCTCTCTTGCTATTCTTCTTCTTGTTCAAAAAACACAAAACATCTAAGAAATCAACAACTCTTCCACCAGGTCCTAAAGGTCTTCCTTTCATTGGAAACTTACACCAACTTGATAGTTCAGCTCTTGGCTTAAACTTCTATGAACTCTCAAAGAAATATGGCCCTATAATCTCCCTTAAACTTGGTTCAAAGCAAACAATAGTTGTTTCATCAGCTAAAATGGCCAAACAAGTAATGAAAACACACGACATCGAATTCTGTAACCGACCCGCTTTAATCAGCCATATGAAATTCTCATATGATGGATTAGACCAGTTTTTTTCACCATATAGAGAATATTGGAGACACACCAAAAAACTTTCCTTCATCCATTTTCTTAGTGTCAAACGTGTCGTAATGTTTTCCTCGGTTAGAAAATACGAGACAACTCAAATGATCAAGAAGATATCAGAACATGCTTCTTCCAACAAAGTTGTGAATTTGCATGAGCTTCTCATGTGTCTAACAAGCGCGGTAGTTTGTAGGACCGCGTTCGGTAGAAGGTTTGAAGATGAAGCAGCTGAACGTAGCATGTTTCATGATTTGCTTAAAGAAGCTCAGGAAATGACAATTTCGTTCTTTTACTCAGATTATTTGCCTTTTGTTGGAGGGATTGTTGATAAGTTCACCGGATTGATGAGTCGTCTTGAGAAATTGTTCAAGATTTTGGATGGTTTCTTTCAGAGTGTTGTTGATGAACATCTTGATCCAAATAGAAAGAAGTTGCCTCCTCATGAAGATGATGTAATTGATGCCTTGATTGAATTGAAGAATGATCCTTACTGCTCAATGGATCTCAAATCTGAACACATCAAACCCTTGATCATGAACACTTCATGA
Protein sequence

>Msa0734700

MSPLVLLPFALLLFFFLFKKHKTSKKSTTLPPGPKGLPFIGNLHQLDSSALGLNFYELSKKYGPIISLKLGSKQTIVVSSAKMAKQVMKTHDIEFCNRPALISHMKFSYDGLDQFFSPYREYWRHTKKLSFIHFLSVKRVVMFSSVRKYETTQMIKKISEHASSNKVVNLHELLMCLTSAVVCRTAFGRRFEDEAAERSMFHDLLKEAQEMTISFFYSDYLPFVGGIVDKFTGLMSRLEKLFKILDGFFQSVVDEHLDPNRKKLPPHEDDVIDALIELKNDPYCSMDLKSEHIKPLIMNTS*