AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0546070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0546070 MtrunA17_Chr4g0016861 75.000 44 10 1 1 43 1 44 1.60e-14 63.2
Msa0546070 MtrunA17_Chr8g0355631 100.000 31 0 0 1 31 35 65 1.85e-14 63.9
Msa0546070 MtrunA17_Chr4g0015761 100.000 31 0 0 1 31 35 65 2.02e-14 63.5
Msa0546070 MtrunA17_CPg0492811 100.000 31 0 0 1 31 35 65 2.02e-14 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0546070 ATCG00600.1 96.774 31 1 0 1 31 1 31 1.47e-14 63.5

Find 48 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGATTGAAGTTTCTCTATT+TGG 0.115333 4_1:-37224843 Msa0546070:CDS
AATAATCCAGCCAAAGTAAT+AGG 0.315680 4_1:+37224801 None:intergenic
CGTGTGTCGCCCAGGGCATA+AGG 0.331073 4_1:+37223893 None:intergenic
CTAATTCCTATTACTTTGGC+TGG 0.352028 4_1:-37224807 Msa0546070:CDS
TCTCTATTTGGAATCGTGTT+AGG 0.358426 4_1:-37224831 Msa0546070:CDS
CCGTCCTCAGTTCGGATTGT+AGG 0.381191 4_1:-37223811 None:intergenic
AGGTCTAATTCCTATTACTT+TGG 0.388074 4_1:-37224811 Msa0546070:CDS
TTGAAAGAGAGGAGTGCCTT+CGG 0.400426 4_1:-37224090 Msa0546070:CDS
TGAAAGAGAGGAGTGCCTTC+GGG 0.410222 4_1:-37224089 Msa0546070:CDS
TCATCATGCCCCTTATGCCC+TGG 0.429081 4_1:-37223903 Msa0546070:CDS
GTGTGTCGCCCAGGGCATAA+GGG 0.445551 4_1:+37223894 None:intergenic
TTGTAGCACGTGTGTCGCCC+AGG 0.451026 4_1:+37223885 None:intergenic
CTCTCTTTCAAGAGGATTCG+CGG 0.466254 4_1:+37224102 None:intergenic
AGGTCGCAATTAACCTTACC+AGG 0.486897 4_1:-37224135 Msa0546070:CDS
TGAAGTTAGCTCACCCTCGC+GGG 0.492689 4_1:+37223839 None:intergenic
GGGCGACACACGTGCTACAA+TGG 0.509988 4_1:-37223882 Msa0546070:CDS
CGGCATGTCAAGCCCTGGTA+AGG 0.515593 4_1:+37224122 None:intergenic
CATCATGCCCCTTATGCCCT+GGG 0.525526 4_1:-37223902 Msa0546070:CDS
ACGTCATCCTCACCTTCCTC+CGG 0.540070 4_1:+37223930 None:intergenic
ACAGACTGCCGGTGATAAGC+CGG 0.550407 4_1:-37223949 Msa0546070:intron
GACACACGTGCTACAATGGA+CGG 0.553547 4_1:-37223878 Msa0546070:CDS
TGTGTCGCCCAGGGCATAAG+GGG 0.556075 4_1:+37223895 None:intergenic
ACCTTCCTCCGGCTTATCAC+CGG 0.556532 4_1:+37223941 None:intergenic
CGCGAATCCTCTTGAAAGAG+AGG 0.570712 4_1:-37224101 Msa0546070:CDS
TGTAGCACGTGTGTCGCCCA+GGG 0.572519 4_1:+37223886 None:intergenic
ACCTGTGTCCGCGTTCCCGA+AGG 0.572763 4_1:+37224074 None:intergenic
TTCGGGAACGCGGACACAGG+TGG 0.572987 4_1:-37224072 Msa0546070:CDS
AGGCACTCCTCTCTTTCAAG+AGG 0.574313 4_1:+37224094 None:intergenic
ACACACGTGCTACAATGGAC+GGG 0.581159 4_1:-37223877 Msa0546070:CDS
GCCTTCGGGAACGCGGACAC+AGG 0.582232 4_1:-37224075 Msa0546070:CDS
CCTACAATCCGAACTGAGGA+CGG 0.584700 4_1:+37223811 None:intergenic
GCCGGTGATAAGCCGGAGGA+AGG 0.586623 4_1:-37223942 Msa0546070:CDS
ACGCGGACACAGGTGGTGCA+TGG 0.589728 4_1:-37224065 Msa0546070:CDS
CTACAATCCGAACTGAGGAC+GGG 0.590250 4_1:+37223812 None:intergenic
TTTGGCTGGATTATTTGTAA+CGG 0.592623 4_1:-37224793 Msa0546070:CDS
GAGGAGTGCCTTCGGGAACG+CGG 0.593783 4_1:-37224082 Msa0546070:CDS
ATTCGCGGCATGTCAAGCCC+TGG 0.599152 4_1:+37224117 None:intergenic
GAAGTTAGCTCACCCTCGCG+GGG 0.610330 4_1:+37223840 None:intergenic
AAAGGATCGCGACCCCGCGA+GGG 0.611007 4_1:-37223852 Msa0546070:CDS
TTGAAGTTAGCTCACCCTCG+CGG 0.611266 4_1:+37223838 None:intergenic
CAAAGGATCGCGACCCCGCG+AGG 0.616226 4_1:-37223853 Msa0546070:CDS
TGGAACCCTGAACAGACTGC+CGG 0.624398 4_1:-37223960 Msa0546070:intron
TGCTACAATGGACGGGACAA+AGG 0.624676 4_1:-37223870 Msa0546070:CDS
TGATAAGCCGGAGGAAGGTG+AGG 0.628459 4_1:-37223937 Msa0546070:CDS
GACTGCCGGTGATAAGCCGG+AGG 0.685189 4_1:-37223946 Msa0546070:CDS
GGTCGCAATTAACCTTACCA+GGG 0.699949 4_1:-37224134 Msa0546070:CDS
GCAGCCTACAATCCGAACTG+AGG 0.704134 4_1:+37223807 None:intergenic
GCATATTTACAATATCGACG+TGG 0.789819 4_1:-37224771 Msa0546070:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCTTAAATATTCAATAAT+GGG + chr4_1:37224025-37224044 None:intergenic 10.0%
!! AAATCTTAAATATTCAATAA+TGG + chr4_1:37224026-37224045 None:intergenic 10.0%
!! TATTCTATATATATATAGAA+TGG + chr4_1:37224441-37224460 None:intergenic 10.0%
!! AATCTTAAATATTCAATAAT+GGG + chr4_1:37224025-37224044 None:intergenic 10.0%
!! AAATCTTAAATATTCAATAA+TGG + chr4_1:37224026-37224045 None:intergenic 10.0%
!! TATTCTATATATATATAGAA+TGG + chr4_1:37224441-37224460 None:intergenic 10.0%
!!! TCATAAATAATTTTTTGTGA+TGG - chr4_1:37224164-37224183 Msa0546070:CDS 15.0%
!!! TATATCCTGTTTTTTTTTTA+AGG - chr4_1:37224459-37224478 Msa0546070:intron 15.0%
!!! TCATAAATAATTTTTTGTGA+TGG - chr4_1:37224164-37224183 Msa0546070:CDS 15.0%
!!! TATATCCTGTTTTTTTTTTA+AGG - chr4_1:37224459-37224478 Msa0546070:intron 15.0%
!! TAGTATTCAAACAAAGAAAT+GGG + chr4_1:37223960-37223979 None:intergenic 20.0%
!! TTAGTATTCAAACAAAGAAA+TGG + chr4_1:37223961-37223980 None:intergenic 20.0%
!! ATATATAGAATGGAAAAATG+TGG + chr4_1:37224431-37224450 None:intergenic 20.0%
!! ATACACCTTAAAAAAAAAAC+AGG + chr4_1:37224467-37224486 None:intergenic 20.0%
!! TAGTATTCAAACAAAGAAAT+GGG + chr4_1:37223960-37223979 None:intergenic 20.0%
!! TTAGTATTCAAACAAAGAAA+TGG + chr4_1:37223961-37223980 None:intergenic 20.0%
!! ATATATAGAATGGAAAAATG+TGG + chr4_1:37224431-37224450 None:intergenic 20.0%
!! ATACACCTTAAAAAAAAAAC+AGG + chr4_1:37224467-37224486 None:intergenic 20.0%
! ATGATTGAAGTTTCTCTATT+TGG - chr4_1:37223812-37223831 Msa0546070:CDS 25.0%
! ATTCTCAATCTAAGAAGAAT+GGG - chr4_1:37224053-37224072 Msa0546070:CDS 25.0%
! GAGTATGTATCAATTTGAAT+CGG - chr4_1:37224236-37224255 Msa0546070:intron 25.0%
! ATAACTACTAGTTATGGATA+GGG - chr4_1:37224290-37224309 Msa0546070:intron 25.0%
! AAAAGTCTTTACAATGACAA+TGG + chr4_1:37224397-37224416 None:intergenic 25.0%
!!! TTTTTTTAAGGTGTATGAGA+TGG - chr4_1:37224471-37224490 Msa0546070:intron 25.0%
!!! TACCTGTTTTTGGATATAAT+AGG - chr4_1:37224500-37224519 Msa0546070:intron 25.0%
! ATGATTGAAGTTTCTCTATT+TGG - chr4_1:37223812-37223831 Msa0546070:CDS 25.0%
! ATTCTCAATCTAAGAAGAAT+GGG - chr4_1:37224053-37224072 Msa0546070:CDS 25.0%
! GAGTATGTATCAATTTGAAT+CGG - chr4_1:37224236-37224255 Msa0546070:intron 25.0%
! ATAACTACTAGTTATGGATA+GGG - chr4_1:37224290-37224309 Msa0546070:intron 25.0%
! AAAAGTCTTTACAATGACAA+TGG + chr4_1:37224397-37224416 None:intergenic 25.0%
!!! TTTTTTTAAGGTGTATGAGA+TGG - chr4_1:37224471-37224490 Msa0546070:intron 25.0%
!!! TACCTGTTTTTGGATATAAT+AGG - chr4_1:37224500-37224519 Msa0546070:intron 25.0%
AGGTCTAATTCCTATTACTT+TGG - chr4_1:37223844-37223863 Msa0546070:CDS 30.0%
AATAATCCAGCCAAAGTAAT+AGG + chr4_1:37223857-37223876 None:intergenic 30.0%
TTTGGCTGGATTATTTGTAA+CGG - chr4_1:37223862-37223881 Msa0546070:CDS 30.0%
TATTCAAACAAAGAAATGGG+AGG + chr4_1:37223957-37223976 None:intergenic 30.0%
CATTCTCAATCTAAGAAGAA+TGG - chr4_1:37224052-37224071 Msa0546070:CDS 30.0%
TTCTCAATCTAAGAAGAATG+GGG - chr4_1:37224054-37224073 Msa0546070:CDS 30.0%
GATACGATAACTACTAGTTA+TGG - chr4_1:37224284-37224303 Msa0546070:intron 30.0%
GATAACTACTAGTTATGGAT+AGG - chr4_1:37224289-37224308 Msa0546070:intron 30.0%
ACAATGGAAACCAATGTAAA+GGG + chr4_1:37224381-37224400 None:intergenic 30.0%
! ATGGAGAAAATACCTGTTTT+TGG - chr4_1:37224490-37224509 Msa0546070:intron 30.0%
GACCTATTATATCCAAAAAC+AGG + chr4_1:37224505-37224524 None:intergenic 30.0%
AGGTCTAATTCCTATTACTT+TGG - chr4_1:37223844-37223863 Msa0546070:CDS 30.0%
AATAATCCAGCCAAAGTAAT+AGG + chr4_1:37223857-37223876 None:intergenic 30.0%
TTTGGCTGGATTATTTGTAA+CGG - chr4_1:37223862-37223881 Msa0546070:CDS 30.0%
TATTCAAACAAAGAAATGGG+AGG + chr4_1:37223957-37223976 None:intergenic 30.0%
CATTCTCAATCTAAGAAGAA+TGG - chr4_1:37224052-37224071 Msa0546070:CDS 30.0%
TTCTCAATCTAAGAAGAATG+GGG - chr4_1:37224054-37224073 Msa0546070:CDS 30.0%
GATACGATAACTACTAGTTA+TGG - chr4_1:37224284-37224303 Msa0546070:intron 30.0%
GATAACTACTAGTTATGGAT+AGG - chr4_1:37224289-37224308 Msa0546070:intron 30.0%
ACAATGGAAACCAATGTAAA+GGG + chr4_1:37224381-37224400 None:intergenic 30.0%
! ATGGAGAAAATACCTGTTTT+TGG - chr4_1:37224490-37224509 Msa0546070:intron 30.0%
GACCTATTATATCCAAAAAC+AGG + chr4_1:37224505-37224524 None:intergenic 30.0%
! TCTCTATTTGGAATCGTGTT+AGG - chr4_1:37223824-37223843 Msa0546070:CDS 35.0%
CTAATTCCTATTACTTTGGC+TGG - chr4_1:37223848-37223867 Msa0546070:CDS 35.0%
GCATATTTACAATATCGACG+TGG - chr4_1:37223884-37223903 Msa0546070:CDS 35.0%
GCATGCATACATACTCAATA+TGG - chr4_1:37224198-37224217 Msa0546070:intron 35.0%
!! TTTTGGGTACAAAATGTCAC+AGG + chr4_1:37224331-37224350 None:intergenic 35.0%
GACAATGGAAACCAATGTAA+AGG + chr4_1:37224382-37224401 None:intergenic 35.0%
TTAGTTGCCAACGTTTAGTT+TGG - chr4_1:37224675-37224694 Msa0546070:intron 35.0%
! TCTCTATTTGGAATCGTGTT+AGG - chr4_1:37223824-37223843 Msa0546070:CDS 35.0%
CTAATTCCTATTACTTTGGC+TGG - chr4_1:37223848-37223867 Msa0546070:CDS 35.0%
GCATATTTACAATATCGACG+TGG - chr4_1:37223884-37223903 Msa0546070:CDS 35.0%
GCATGCATACATACTCAATA+TGG - chr4_1:37224198-37224217 Msa0546070:intron 35.0%
!! TTTTGGGTACAAAATGTCAC+AGG + chr4_1:37224331-37224350 None:intergenic 35.0%
GACAATGGAAACCAATGTAA+AGG + chr4_1:37224382-37224401 None:intergenic 35.0%
TTAGTTGCCAACGTTTAGTT+TGG - chr4_1:37224675-37224694 Msa0546070:intron 35.0%
TCAATCTAAGAAGAATGGGG+CGG - chr4_1:37224057-37224076 Msa0546070:CDS 40.0%
AGGATTTGAACCTACGACAT+CGG - chr4_1:37224093-37224112 Msa0546070:CDS 40.0%
! AAAGCGCTCTTAGTTCAGTT+CGG + chr4_1:37224140-37224159 None:intergenic 40.0%
TAGTTATGGATAGGGATGAC+AGG - chr4_1:37224298-37224317 Msa0546070:intron 40.0%
TCAATCTAAGAAGAATGGGG+CGG - chr4_1:37224057-37224076 Msa0546070:CDS 40.0%
AGGATTTGAACCTACGACAT+CGG - chr4_1:37224093-37224112 Msa0546070:CDS 40.0%
! AAAGCGCTCTTAGTTCAGTT+CGG + chr4_1:37224140-37224159 None:intergenic 40.0%
TAGTTATGGATAGGGATGAC+AGG - chr4_1:37224298-37224317 Msa0546070:intron 40.0%
ATATCGACGTGGTGATCAGT+TGG - chr4_1:37223895-37223914 Msa0546070:CDS 45.0%
GGATTTGAACCTACGACATC+GGG - chr4_1:37224094-37224113 Msa0546070:CDS 45.0%
TAGTTCAGTTCGGTAGAACG+CGG + chr4_1:37224130-37224149 None:intergenic 45.0%
!!! CTTGGTAGCGCGTTTGTTTT+GGG + chr4_1:37224347-37224366 None:intergenic 45.0%
TGCGCTACATCCCTTTACAT+TGG - chr4_1:37224368-37224387 Msa0546070:intron 45.0%
AGGTCGCAATTAACCTTACC+AGG - chr4_1:37224520-37224539 Msa0546070:intron 45.0%
GGTCGCAATTAACCTTACCA+GGG - chr4_1:37224521-37224540 Msa0546070:intron 45.0%
CTCTCTTTCAAGAGGATTCG+CGG + chr4_1:37224556-37224575 None:intergenic 45.0%
!! TTGAAAGAGAGGAGTGCCTT+CGG - chr4_1:37224565-37224584 Msa0546070:intron 45.0%
ACGTTGGCAACTAAACACGA+GGG + chr4_1:37224669-37224688 None:intergenic 45.0%
AACGTTGGCAACTAAACACG+AGG + chr4_1:37224670-37224689 None:intergenic 45.0%
CAGGGTTCCAAACTAAACGT+TGG + chr4_1:37224685-37224704 None:intergenic 45.0%
TCAAAAACCCGTCCTCAGTT+CGG - chr4_1:37224836-37224855 Msa0546070:CDS 45.0%
ATATCGACGTGGTGATCAGT+TGG - chr4_1:37223895-37223914 Msa0546070:CDS 45.0%
GGATTTGAACCTACGACATC+GGG - chr4_1:37224094-37224113 Msa0546070:CDS 45.0%
TAGTTCAGTTCGGTAGAACG+CGG + chr4_1:37224130-37224149 None:intergenic 45.0%
!!! CTTGGTAGCGCGTTTGTTTT+GGG + chr4_1:37224347-37224366 None:intergenic 45.0%
TGCGCTACATCCCTTTACAT+TGG - chr4_1:37224368-37224387 Msa0546070:intron 45.0%
AGGTCGCAATTAACCTTACC+AGG - chr4_1:37224520-37224539 Msa0546070:intron 45.0%
GGTCGCAATTAACCTTACCA+GGG - chr4_1:37224521-37224540 Msa0546070:intron 45.0%
CTCTCTTTCAAGAGGATTCG+CGG + chr4_1:37224556-37224575 None:intergenic 45.0%
!! TTGAAAGAGAGGAGTGCCTT+CGG - chr4_1:37224565-37224584 Msa0546070:intron 45.0%
ACGTTGGCAACTAAACACGA+GGG + chr4_1:37224669-37224688 None:intergenic 45.0%
AACGTTGGCAACTAAACACG+AGG + chr4_1:37224670-37224689 None:intergenic 45.0%
CAGGGTTCCAAACTAAACGT+TGG + chr4_1:37224685-37224704 None:intergenic 45.0%
TCAAAAACCCGTCCTCAGTT+CGG - chr4_1:37224836-37224855 Msa0546070:CDS 45.0%
! GAACCTACGACATCGGGTTT+TGG - chr4_1:37224100-37224119 Msa0546070:CDS 50.0%
TCTCCAAAACCCGATGTCGT+AGG + chr4_1:37224106-37224125 None:intergenic 50.0%
AGTTCAGTTCGGTAGAACGC+GGG + chr4_1:37224129-37224148 None:intergenic 50.0%
!!! GCTTGGTAGCGCGTTTGTTT+TGG + chr4_1:37224348-37224367 None:intergenic 50.0%
TAAAGGGATGTAGCGCAGCT+TGG + chr4_1:37224365-37224384 None:intergenic 50.0%
CGCGAATCCTCTTGAAAGAG+AGG - chr4_1:37224554-37224573 Msa0546070:intron 50.0%
AGGCACTCCTCTCTTTCAAG+AGG + chr4_1:37224564-37224583 None:intergenic 50.0%
!! TGAAAGAGAGGAGTGCCTTC+GGG - chr4_1:37224566-37224585 Msa0546070:intron 50.0%
GGACTTAACCCAACACCTCA+CGG + chr4_1:37224632-37224651 None:intergenic 50.0%
TATCACCGGCAGTCTGTTCA+GGG + chr4_1:37224703-37224722 None:intergenic 50.0%
TTATCACCGGCAGTCTGTTC+AGG + chr4_1:37224704-37224723 None:intergenic 50.0%
GACACACGTGCTACAATGGA+CGG - chr4_1:37224777-37224796 Msa0546070:CDS 50.0%
ACACACGTGCTACAATGGAC+GGG - chr4_1:37224778-37224797 Msa0546070:CDS 50.0%
TGCTACAATGGACGGGACAA+AGG - chr4_1:37224785-37224804 Msa0546070:CDS 50.0%
TTGAAGTTAGCTCACCCTCG+CGG + chr4_1:37224820-37224839 None:intergenic 50.0%
CTACAATCCGAACTGAGGAC+GGG + chr4_1:37224846-37224865 None:intergenic 50.0%
! GAACCTACGACATCGGGTTT+TGG - chr4_1:37224100-37224119 Msa0546070:CDS 50.0%
TCTCCAAAACCCGATGTCGT+AGG + chr4_1:37224106-37224125 None:intergenic 50.0%
AGTTCAGTTCGGTAGAACGC+GGG + chr4_1:37224129-37224148 None:intergenic 50.0%
!!! GCTTGGTAGCGCGTTTGTTT+TGG + chr4_1:37224348-37224367 None:intergenic 50.0%
TAAAGGGATGTAGCGCAGCT+TGG + chr4_1:37224365-37224384 None:intergenic 50.0%
CGCGAATCCTCTTGAAAGAG+AGG - chr4_1:37224554-37224573 Msa0546070:intron 50.0%
AGGCACTCCTCTCTTTCAAG+AGG + chr4_1:37224564-37224583 None:intergenic 50.0%
!! TGAAAGAGAGGAGTGCCTTC+GGG - chr4_1:37224566-37224585 Msa0546070:intron 50.0%
GGACTTAACCCAACACCTCA+CGG + chr4_1:37224632-37224651 None:intergenic 50.0%
TATCACCGGCAGTCTGTTCA+GGG + chr4_1:37224703-37224722 None:intergenic 50.0%
TTATCACCGGCAGTCTGTTC+AGG + chr4_1:37224704-37224723 None:intergenic 50.0%
GACACACGTGCTACAATGGA+CGG - chr4_1:37224777-37224796 Msa0546070:CDS 50.0%
ACACACGTGCTACAATGGAC+GGG - chr4_1:37224778-37224797 Msa0546070:CDS 50.0%
TGCTACAATGGACGGGACAA+AGG - chr4_1:37224785-37224804 Msa0546070:CDS 50.0%
TTGAAGTTAGCTCACCCTCG+CGG + chr4_1:37224820-37224839 None:intergenic 50.0%
CTACAATCCGAACTGAGGAC+GGG + chr4_1:37224846-37224865 None:intergenic 50.0%
TGGAACCCTGAACAGACTGC+CGG - chr4_1:37224695-37224714 Msa0546070:intron 55.0%
ACAGACTGCCGGTGATAAGC+CGG - chr4_1:37224706-37224725 Msa0546070:intron 55.0%
ACCTTCCTCCGGCTTATCAC+CGG + chr4_1:37224717-37224736 None:intergenic 55.0%
TGATAAGCCGGAGGAAGGTG+AGG - chr4_1:37224718-37224737 Msa0546070:intron 55.0%
ACGTCATCCTCACCTTCCTC+CGG + chr4_1:37224728-37224747 None:intergenic 55.0%
TCATCATGCCCCTTATGCCC+TGG - chr4_1:37224752-37224771 Msa0546070:intron 55.0%
CATCATGCCCCTTATGCCCT+GGG - chr4_1:37224753-37224772 Msa0546070:intron 55.0%
TGAAGTTAGCTCACCCTCGC+GGG + chr4_1:37224819-37224838 None:intergenic 55.0%
TGGAACCCTGAACAGACTGC+CGG - chr4_1:37224695-37224714 Msa0546070:intron 55.0%
ACAGACTGCCGGTGATAAGC+CGG - chr4_1:37224706-37224725 Msa0546070:intron 55.0%
ACCTTCCTCCGGCTTATCAC+CGG + chr4_1:37224717-37224736 None:intergenic 55.0%
TGATAAGCCGGAGGAAGGTG+AGG - chr4_1:37224718-37224737 Msa0546070:intron 55.0%
ACGTCATCCTCACCTTCCTC+CGG + chr4_1:37224728-37224747 None:intergenic 55.0%
TCATCATGCCCCTTATGCCC+TGG - chr4_1:37224752-37224771 Msa0546070:intron 55.0%
CATCATGCCCCTTATGCCCT+GGG - chr4_1:37224753-37224772 Msa0546070:intron 55.0%
TGAAGTTAGCTCACCCTCGC+GGG + chr4_1:37224819-37224838 None:intergenic 55.0%
CGGCATGTCAAGCCCTGGTA+AGG + chr4_1:37224536-37224555 None:intergenic 60.0%
ATTCGCGGCATGTCAAGCCC+TGG + chr4_1:37224541-37224560 None:intergenic 60.0%
! AGCTCGTGCCGTGAGGTGTT+GGG - chr4_1:37224621-37224640 Msa0546070:intron 60.0%
TGTGTCGCCCAGGGCATAAG+GGG + chr4_1:37224763-37224782 None:intergenic 60.0%
GTGTGTCGCCCAGGGCATAA+GGG + chr4_1:37224764-37224783 None:intergenic 60.0%
TGTAGCACGTGTGTCGCCCA+GGG + chr4_1:37224772-37224791 None:intergenic 60.0%
TTGTAGCACGTGTGTCGCCC+AGG + chr4_1:37224773-37224792 None:intergenic 60.0%
GGGCGACACACGTGCTACAA+TGG - chr4_1:37224773-37224792 Msa0546070:CDS 60.0%
GAAGTTAGCTCACCCTCGCG+GGG + chr4_1:37224818-37224837 None:intergenic 60.0%
CGGCATGTCAAGCCCTGGTA+AGG + chr4_1:37224536-37224555 None:intergenic 60.0%
ATTCGCGGCATGTCAAGCCC+TGG + chr4_1:37224541-37224560 None:intergenic 60.0%
! AGCTCGTGCCGTGAGGTGTT+GGG - chr4_1:37224621-37224640 Msa0546070:intron 60.0%
TGTGTCGCCCAGGGCATAAG+GGG + chr4_1:37224763-37224782 None:intergenic 60.0%
GTGTGTCGCCCAGGGCATAA+GGG + chr4_1:37224764-37224783 None:intergenic 60.0%
TGTAGCACGTGTGTCGCCCA+GGG + chr4_1:37224772-37224791 None:intergenic 60.0%
TTGTAGCACGTGTGTCGCCC+AGG + chr4_1:37224773-37224792 None:intergenic 60.0%
GGGCGACACACGTGCTACAA+TGG - chr4_1:37224773-37224792 Msa0546070:CDS 60.0%
GAAGTTAGCTCACCCTCGCG+GGG + chr4_1:37224818-37224837 None:intergenic 60.0%
GGGGCGGAATCACGCTCTGT+AGG - chr4_1:37224073-37224092 Msa0546070:CDS 65.0%
!! GAGGAGTGCCTTCGGGAACG+CGG - chr4_1:37224573-37224592 Msa0546070:intron 65.0%
ACCTGTGTCCGCGTTCCCGA+AGG + chr4_1:37224584-37224603 None:intergenic 65.0%
TTCGGGAACGCGGACACAGG+TGG - chr4_1:37224583-37224602 Msa0546070:intron 65.0%
ACGCGGACACAGGTGGTGCA+TGG - chr4_1:37224590-37224609 Msa0546070:intron 65.0%
TGTCGTCAGCTCGTGCCGTG+AGG - chr4_1:37224614-37224633 Msa0546070:intron 65.0%
CAGCTCGTGCCGTGAGGTGT+TGG - chr4_1:37224620-37224639 Msa0546070:intron 65.0%
ACGAGGGTTGCGCTCGTTGC+GGG + chr4_1:37224653-37224672 None:intergenic 65.0%
CACGAGGGTTGCGCTCGTTG+CGG + chr4_1:37224654-37224673 None:intergenic 65.0%
GACTGCCGGTGATAAGCCGG+AGG - chr4_1:37224709-37224728 Msa0546070:intron 65.0%
GCCGGTGATAAGCCGGAGGA+AGG - chr4_1:37224713-37224732 Msa0546070:intron 65.0%
CGTGTGTCGCCCAGGGCATA+AGG + chr4_1:37224765-37224784 None:intergenic 65.0%
AAAGGATCGCGACCCCGCGA+GGG - chr4_1:37224803-37224822 Msa0546070:CDS 65.0%
GGGGCGGAATCACGCTCTGT+AGG - chr4_1:37224073-37224092 Msa0546070:CDS 65.0%
!! GAGGAGTGCCTTCGGGAACG+CGG - chr4_1:37224573-37224592 Msa0546070:intron 65.0%
ACCTGTGTCCGCGTTCCCGA+AGG + chr4_1:37224584-37224603 None:intergenic 65.0%
TTCGGGAACGCGGACACAGG+TGG - chr4_1:37224583-37224602 Msa0546070:intron 65.0%
ACGCGGACACAGGTGGTGCA+TGG - chr4_1:37224590-37224609 Msa0546070:intron 65.0%
TGTCGTCAGCTCGTGCCGTG+AGG - chr4_1:37224614-37224633 Msa0546070:intron 65.0%
CAGCTCGTGCCGTGAGGTGT+TGG - chr4_1:37224620-37224639 Msa0546070:intron 65.0%
ACGAGGGTTGCGCTCGTTGC+GGG + chr4_1:37224653-37224672 None:intergenic 65.0%
CACGAGGGTTGCGCTCGTTG+CGG + chr4_1:37224654-37224673 None:intergenic 65.0%
GACTGCCGGTGATAAGCCGG+AGG - chr4_1:37224709-37224728 Msa0546070:intron 65.0%
GCCGGTGATAAGCCGGAGGA+AGG - chr4_1:37224713-37224732 Msa0546070:intron 65.0%
CGTGTGTCGCCCAGGGCATA+AGG + chr4_1:37224765-37224784 None:intergenic 65.0%
AAAGGATCGCGACCCCGCGA+GGG - chr4_1:37224803-37224822 Msa0546070:CDS 65.0%
GCCTTCGGGAACGCGGACAC+AGG - chr4_1:37224580-37224599 Msa0546070:intron 70.0%
CAAAGGATCGCGACCCCGCG+AGG - chr4_1:37224802-37224821 Msa0546070:CDS 70.0%
GCCTTCGGGAACGCGGACAC+AGG - chr4_1:37224580-37224599 Msa0546070:intron 70.0%
CAAAGGATCGCGACCCCGCG+AGG - chr4_1:37224802-37224821 Msa0546070:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 37223812 37224865 37223812 ID=Msa0546070;Name=Msa0546070
chr4_1 mRNA 37223812 37224865 37223812 ID=Msa0546070-mRNA-1;Parent=Msa0546070;Name=Msa0546070-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|0|0|0.75|0.33|0.5|4|0|135
chr4_1 exon 37224772 37224865 37224772 ID=Msa0546070-mRNA-1:exon:9496;Parent=Msa0546070-mRNA-1
chr4_1 exon 37224628 37224635 37224628 ID=Msa0546070-mRNA-1:exon:9495;Parent=Msa0546070-mRNA-1
chr4_1 exon 37224047 37224196 37224047 ID=Msa0546070-mRNA-1:exon:9494;Parent=Msa0546070-mRNA-1
chr4_1 exon 37223812 37223967 37223812 ID=Msa0546070-mRNA-1:exon:9493;Parent=Msa0546070-mRNA-1
chr4_1 CDS 37224772 37224865 37224772 ID=Msa0546070-mRNA-1:cds;Parent=Msa0546070-mRNA-1
chr4_1 CDS 37224628 37224635 37224628 ID=Msa0546070-mRNA-1:cds;Parent=Msa0546070-mRNA-1
chr4_1 CDS 37224047 37224196 37224047 ID=Msa0546070-mRNA-1:cds;Parent=Msa0546070-mRNA-1
chr4_1 CDS 37223812 37223967 37223812 ID=Msa0546070-mRNA-1:cds;Parent=Msa0546070-mRNA-1
Gene Sequence

>Msa0546070

ATGATTGAAGTTTCTCTATTTGGAATCGTGTTAGGTCTAATTCCTATTACTTTGGCTGGATTATTTGTAACGGCATATTTACAATATCGACGTGATTTAAGTGTGTATGAGATGGAGAAAATACCTGTTTTTGGATATAATAGGTCGCAATTAACCTTACCAGGGCTTGACATGCCGCGAATCCTCTTGAAAGAGAGGAGTGCCTTCGGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCACTGCCGGTGATAAGCCGGAGGAAGGTGAGGATGACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGACGGGACAAAGGATCGCGACCCCGCGAGGGTGAGCTAACTTCAAAAACCCGTCCTCAGTTCGGATTGTAG

Protein sequence

>Msa0546070

MIEVSLFGIVLGLIPITLAGLFVTAYLQYRRDLSVYEMEKIPVFGYNRSQLTLPGLDMPRILLKERSAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKGSRPREGELTSKTRPQFGL*