AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0619300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0619300 MtrunA17_Chr8g0382871 97.930 483 7 2 1 482 1 481 0.0 972
Msa0619300 MtrunA17_Chr7g0244421 61.795 479 180 1 4 482 6 481 0.0 639
Msa0619300 MtrunA17_Chr3g0106581 59.672 305 123 0 22 326 13 317 2.23e-136 395
Msa0619300 MtrunA17_Chr7g0233361 29.095 409 253 8 80 479 83 463 1.80e-45 165
Msa0619300 MtrunA17_Chr8g0376561 30.353 425 253 15 76 482 44 443 1.45e-42 157
Msa0619300 MtrunA17_Chr3g0106571 61.176 85 33 0 398 482 2 86 3.02e-36 129
Msa0619300 MtrunA17_Chr4g0038831 27.619 420 264 14 84 472 81 491 4.06e-35 137
Msa0619300 MtrunA17_Chr3g0145711 25.553 407 256 15 19 404 11 391 6.35e-19 89.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0619300 AT4G39660.1 81.950 482 81 2 1 482 1 476 0.0 826
Msa0619300 AT4G39660.2 87.437 398 50 0 85 482 4 401 0.0 740
Msa0619300 AT3G08860.1 60.744 484 182 2 1 482 4 481 0.0 637
Msa0619300 AT2G38400.1 60.543 479 187 2 4 482 1 477 0.0 620
Msa0619300 AT3G08860.2 60.851 470 176 2 1 468 4 467 0.0 616
Msa0619300 AT2G38400.2 59.454 476 191 2 4 479 1 474 0.0 603
Msa0619300 AT1G80600.1 30.097 412 251 9 80 482 73 456 2.27e-51 181
Msa0619300 AT5G46180.1 28.538 424 262 14 76 482 51 450 1.11e-38 147
Msa0619300 AT3G22200.2 27.098 417 271 12 84 472 79 490 1.50e-37 144
Msa0619300 AT3G22200.1 27.098 417 271 12 84 472 70 481 2.03e-37 144
Msa0619300 AT3G48730.1 26.645 304 194 10 83 375 79 364 2.28e-17 85.1
Msa0619300 AT5G63570.1 26.910 301 193 10 83 373 81 364 8.19e-16 80.1
Msa0619300 AT5G63570.2 26.821 302 192 11 83 373 18 301 8.51e-16 79.7

Find 158 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCATCACACTTGCAATTTC+TGG 0.096360 4_2:-70402199 None:intergenic
TGGACTAGTGTATATAATTC+TGG 0.228638 4_2:+70403286 Msa0619300:three_prime_UTR
ATGTATTGAATTGAATCTTC+TGG 0.253389 4_2:-70402222 None:intergenic
AAGATGGCATTCAAAATATC+AGG 0.254872 4_2:-70400574 None:intergenic
GCCGCACAGGAAGCCATTAT+TGG 0.257614 4_2:+70401783 Msa0619300:CDS
TTTGCCATTGTAACTATATC+AGG 0.279616 4_2:-70401830 None:intergenic
ACTTGCAGTGCTCAAGGTTC+TGG 0.300527 4_2:+70402276 Msa0619300:CDS
TGCTGATTTCGCCGAGGCTT+TGG 0.324826 4_2:+70400651 Msa0619300:CDS
ATTGGCAATGGTTTGCCATT+AGG 0.331757 4_2:+70402160 Msa0619300:CDS
AAATATTCACCCCATTGAAA+TGG 0.334730 4_2:+70403191 Msa0619300:three_prime_UTR
GTCCAAGACCATATTGACTA+TGG 0.338821 4_2:+70401510 Msa0619300:CDS
TGACTCACTTTAAGATTTCC+AGG 0.342658 4_2:-70400685 None:intergenic
AAGATTCAATTCAATACATT+TGG 0.343865 4_2:+70402226 Msa0619300:CDS
CCGCACAGGAAGCCATTATT+GGG 0.343964 4_2:+70401784 Msa0619300:CDS
CACCAGCCTCATCCGTATAA+TGG 0.348055 4_2:+70400275 Msa0619300:CDS
CATATTGACTATGGGACTTC+AGG 0.361967 4_2:+70401519 Msa0619300:CDS
GGCGGTGGCGGTGGCGGAGG+AGG 0.365818 4_2:-70400210 None:intergenic
GACCCATACCGTGGAGTCTT+TGG 0.367976 4_2:+70401459 Msa0619300:CDS
GGGAACCCCGTATGTTCTGC+CGG 0.378650 4_2:+70402250 Msa0619300:CDS
ATAAAGAAATTCCTTGATAA+TGG 0.378967 4_2:+70403103 Msa0619300:three_prime_UTR
GACATCTTTAGCATAGCTAT+TGG 0.380021 4_2:-70401490 None:intergenic
GATGAAGTGCAAACTGGATT+TGG 0.382596 4_2:+70401761 Msa0619300:CDS
GGGACTTCAGGAAAAGTTGC+TGG 0.384171 4_2:+70401531 Msa0619300:CDS
GTATATAATTCTGGGTTTCA+TGG 0.385830 4_2:+70403295 Msa0619300:three_prime_UTR
TCGGCGGATGGTCCATTATA+CGG 0.389198 4_2:-70400287 None:intergenic
TACAAATATATATTCTGCTT+AGG 0.389292 4_2:-70399824 None:intergenic
AATCTTCATTCAATCAACTA+TGG 0.391898 4_2:+70400103 Msa0619300:exon
TTGAGTGGCGGTGGCGGTGG+CGG 0.392784 4_2:-70400216 None:intergenic
TGTATTGAATTGAATCTTCT+GGG 0.397988 4_2:-70402221 None:intergenic
ATAGTTGATTGAATGAAGAT+TGG 0.408634 4_2:-70400101 None:intergenic
CAGGCTCATTGCGCTGATGT+TGG 0.409243 4_2:+70402313 Msa0619300:CDS
GCTTTGGCCGCCAAGATGCC+TGG 0.409635 4_2:+70400667 Msa0619300:CDS
GTGTCTCGAATCCCCAATAA+TGG 0.409809 4_2:-70401796 None:intergenic
GGTTTGAGTGGCGGTGGCGG+TGG 0.412150 4_2:-70400219 None:intergenic
CTGAAGTCCCATAGTCAATA+TGG 0.412467 4_2:-70401518 None:intergenic
GTTGTTCTGTAATAGGGTAT+TGG 0.414384 4_2:+70402142 Msa0619300:intron
GTAGAACTTGGCATTCTAGC+TGG 0.420173 4_2:+70402839 Msa0619300:intron
AGAAATCATACCAAGATTAC+CGG 0.422579 4_2:-70400897 None:intergenic
GGGATTGTTACTGTTTCTGC+TGG 0.423180 4_2:+70400541 Msa0619300:CDS
AAGAAACAAACCTCAGGAAG+TGG 0.423458 4_2:-70400989 None:intergenic
AGTGGCGGTGGCGGTGGCGG+AGG 0.426874 4_2:-70400213 None:intergenic
TGGTTCTGAAGCAAATGAAT+TGG 0.427678 4_2:+70400850 Msa0619300:CDS
ACAGCAGTTTCAGCCTTTGC+AGG 0.430454 4_2:-70402703 None:intergenic
TTTAAGATTTCCAGGCATCT+TGG 0.432518 4_2:-70400677 None:intergenic
ACAAATATATATTCTGCTTA+GGG 0.435153 4_2:-70399823 None:intergenic
GGACTAGTGTATATAATTCT+GGG 0.437024 4_2:+70403287 Msa0619300:three_prime_UTR
AGGAATTTCTTTATGCCAGC+AGG 0.437757 4_2:-70403094 None:intergenic
CAATTTACATAACGGGTCAA+TGG 0.440226 4_2:-70403418 None:intergenic
TTAATGTTAAATTAAAATGT+AGG 0.451187 4_2:+70403345 Msa0619300:three_prime_UTR
TAAATCGGAACGGTTAGGTT+TGG 0.452559 4_2:-70400156 None:intergenic
CTGGGTTTCATGGCATCAAA+AGG 0.453650 4_2:+70403305 Msa0619300:three_prime_UTR
AATATTCACCCCATTGAAAT+GGG 0.454729 4_2:+70403192 Msa0619300:three_prime_UTR
ATTGGTGATGTGAGGGGAAG+AGG 0.455086 4_2:+70402634 Msa0619300:CDS
TAGTTGATTGAATGAAGATT+GGG 0.457509 4_2:-70400100 None:intergenic
TCCCATAGTCAATATGGTCT+TGG 0.460865 4_2:-70401512 None:intergenic
AAGACTCCACGGTATGGGTC+TGG 0.464064 4_2:-70401456 None:intergenic
ATTCAATTCAATACATTTGG+TGG 0.466618 4_2:+70402229 Msa0619300:CDS
GCAAGTAAATCGGAACGGTT+AGG 0.469454 4_2:-70400161 None:intergenic
ATCTTGGTATGATTTCTTTG+AGG 0.472887 4_2:+70400903 Msa0619300:CDS
AGGTCTGCATGCAAGTAAAT+CGG 0.473835 4_2:-70400171 None:intergenic
TGATCTGAAATTTAGTCAGC+AGG 0.476408 4_2:-70403390 None:intergenic
GCAATTTGCCGCCATTATCA+AGG 0.476634 4_2:-70403114 None:intergenic
GGAGGAAGTTCTAGTACAAT+GGG 0.479315 4_2:+70400938 Msa0619300:CDS
TGGCGGTGGCGGAGGAGGAT+CGG 0.482129 4_2:-70400205 None:intergenic
GGAACCCCGTATGTTCTGCC+GGG 0.483488 4_2:+70402251 Msa0619300:CDS
TGGAGGAAGTTCTAGTACAA+TGG 0.484867 4_2:+70400937 Msa0619300:CDS
CATCTTGGCGGCCAAAGCCT+CGG 0.487359 4_2:-70400662 None:intergenic
AGATTGTATACCGGTAATCT+TGG 0.491103 4_2:+70400887 Msa0619300:CDS
CTGTAATAGGGTATTGGCAA+TGG 0.494645 4_2:+70402148 Msa0619300:intron
GCACCAAAGACTCCACGGTA+TGG 0.496972 4_2:-70401462 None:intergenic
TCTTTGAGGAATGCATATCA+TGG 0.501479 4_2:+70400917 Msa0619300:CDS
TTCAATTCAATACATTTGGT+GGG 0.503313 4_2:+70402230 Msa0619300:CDS
GCCAAGCGTAAACAGTTCCT+TGG 0.509408 4_2:+70400320 Msa0619300:CDS
CTCAGTCATTGGTGATGTGA+GGG 0.509676 4_2:+70402627 Msa0619300:intron
TAGAACTTGGCATTCTAGCT+GGG 0.511798 4_2:+70402840 Msa0619300:intron
GTTTGTGTAGTTGAATATTG+TGG 0.514435 4_2:+70400459 Msa0619300:intron
ACCAAGGAACTGTTTACGCT+TGG 0.514714 4_2:-70400321 None:intergenic
CAAACTGGATTTGGCCGCAC+AGG 0.519629 4_2:+70401770 Msa0619300:CDS
ATTGCAGATGAAGTGCAAAC+TGG 0.520939 4_2:+70401755 Msa0619300:CDS
GATGGTTTGAGTGGCGGTGG+CGG 0.526991 4_2:-70400222 None:intergenic
AAGTTTACTCTGCTCAAAGA+TGG 0.529014 4_2:-70400590 None:intergenic
AGCATGGTGTAGATAAATAG+TGG 0.534502 4_2:-70400626 None:intergenic
AGAAAGTACCAACTATAAGA+AGG 0.535260 4_2:-70403220 None:intergenic
GTCCATTATACGGATGAGGC+TGG 0.536767 4_2:-70400277 None:intergenic
CTTGAGCACTGCAAGTCCCC+CGG 0.539059 4_2:-70402269 None:intergenic
GAGGGGAAGAGGACTAATGC+TGG 0.543953 4_2:+70402645 Msa0619300:CDS
TGATAGAAATGGAACAAGGA+AGG 0.544076 4_2:-70400344 None:intergenic
CAATATCTGTATGATGAAGC+TGG 0.544301 4_2:+70400493 Msa0619300:CDS
AAGATTTCCAGGCATCTTGG+CGG 0.548588 4_2:-70400674 None:intergenic
ACGCTTGGCGAATACTTCAT+CGG 0.548870 4_2:-70400306 None:intergenic
GTTGTAACTACAGCTCCTAA+TGG 0.549950 4_2:-70402175 None:intergenic
GTGATCTCAAACGCTCAAGC+AGG 0.554165 4_2:-70402342 None:intergenic
GCTGGGAAAGGAGGACTGCA+TGG 0.556047 4_2:+70402857 Msa0619300:CDS
TCTGGATAACGAGAAGCGGC+AGG 0.556953 4_2:+70402294 Msa0619300:CDS
AGGGGAAGAGGACTAATGCT+GGG 0.557249 4_2:+70402646 Msa0619300:CDS
TCTTTACTGAAACACATTGG+TGG 0.561144 4_2:-70402899 None:intergenic
CATTATTTATGAGTTGAATG+TGG 0.561326 4_2:+70403266 Msa0619300:three_prime_UTR
TATGACATTGTACACGAGGC+TGG 0.561488 4_2:+70401722 Msa0619300:CDS
GTGTAGTTGAATATTGTGGA+GGG 0.563413 4_2:+70400463 Msa0619300:intron
CAATCCCAGCAAAAGCATCA+AGG 0.564493 4_2:-70400525 None:intergenic
GGAGCAGTTGAACTCGTACC+TGG 0.565302 4_2:+70401683 Msa0619300:CDS
CACCAAAGACTCCACGGTAT+GGG 0.569702 4_2:-70401461 None:intergenic
GGCATTCTAGCTGGGAAAGG+AGG 0.570151 4_2:+70402848 Msa0619300:CDS
TCCAGAAATTGCAAGTGTGA+TGG 0.570685 4_2:+70402198 Msa0619300:CDS
GATGGTCCATTATACGGATG+AGG 0.572300 4_2:-70400281 None:intergenic
GAACCCCGTATGTTCTGCCG+GGG 0.574287 4_2:+70402252 Msa0619300:CDS
TCCAAGACCATATTGACTAT+GGG 0.574460 4_2:+70401511 Msa0619300:CDS
TGATCGAACGGCGGAATCTG+CGG 0.579441 4_2:-70400254 None:intergenic
AATCTGCGGCGGAGTAGTGA+TGG 0.579469 4_2:-70400240 None:intergenic
GGGTAGAGCTTGTTACCGAC+CGG 0.584382 4_2:+70402668 Msa0619300:CDS
GAGGATCGGAGAGAAGAGAA+AGG 0.584582 4_2:-70400191 None:intergenic
TATTCCTGATATAGTTACAA+TGG 0.585000 4_2:+70401826 Msa0619300:CDS
GCGAATACTTCATCGGCGGA+TGG 0.586284 4_2:-70400299 None:intergenic
GTCTCACCGCTCTTAACACA+TGG 0.586462 4_2:+70400960 Msa0619300:CDS
AGTGATGGTTTGAGTGGCGG+TGG 0.587951 4_2:-70400225 None:intergenic
ATTCATAGCTGAAACAATCC+AGG 0.588039 4_2:+70401554 Msa0619300:CDS
CCCAATAATGGCTTCCTGTG+CGG 0.588913 4_2:-70401784 None:intergenic
TCTCAGTCATTGGTGATGTG+AGG 0.591066 4_2:+70402626 Msa0619300:intron
CTTGGCATTCTAGCTGGGAA+AGG 0.591195 4_2:+70402845 Msa0619300:CDS
TGTGTAGTTGAATATTGTGG+AGG 0.595941 4_2:+70400462 Msa0619300:intron
AAATGAATTGGCAATGCTGA+TGG 0.597471 4_2:+70400862 Msa0619300:CDS
AAGAAATTCCTTGATAATGG+CGG 0.603153 4_2:+70403106 Msa0619300:three_prime_UTR
TGATATAGTTACAATGGCAA+AGG 0.606729 4_2:+70401832 Msa0619300:CDS
ATATATATTCTGCTTAGGGA+AGG 0.606929 4_2:-70399819 None:intergenic
AATGGCGGCAAATTGCTACA+TGG 0.610144 4_2:+70403121 Msa0619300:three_prime_UTR
TGTAGTTGAATATTGTGGAG+GGG 0.612466 4_2:+70400464 Msa0619300:intron
TCAGTCATTGGTGATGTGAG+GGG 0.613915 4_2:+70402628 Msa0619300:intron
CTGATGGCAAGATTGTATAC+CGG 0.616966 4_2:+70400878 Msa0619300:CDS
CGGCGAAATCAGCAATAGCA+TGG 0.617141 4_2:-70400642 None:intergenic
CGGAGTAGTGATGGTTTGAG+TGG 0.619784 4_2:-70400231 None:intergenic
GGATGAGGCTGGTGATCGAA+CGG 0.624953 4_2:-70400266 None:intergenic
GAAATGATTATGCATCCTGC+TGG 0.627216 4_2:+70403079 Msa0619300:exon
TTATTGGGGATTCGAGACAC+AGG 0.628247 4_2:+70401799 Msa0619300:CDS
CGCACAGGAAGCCATTATTG+GGG 0.631540 4_2:+70401785 Msa0619300:CDS
AGATGGCATTCAAAATATCA+GGG 0.633200 4_2:-70400573 None:intergenic
TGCTATTGCTGATTTCGCCG+AGG 0.635228 4_2:+70400645 Msa0619300:CDS
TCATCTTTACTGAAACACAT+TGG 0.635753 4_2:-70402902 None:intergenic
ATGGAAATACCCACTTCCTG+AGG 0.639038 4_2:+70400979 Msa0619300:CDS
AGAAACAAACCTCAGGAAGT+GGG 0.641740 4_2:-70400988 None:intergenic
AGGTTCTGGATAACGAGAAG+CGG 0.647863 4_2:+70402290 Msa0619300:CDS
AGTAGTGATGGTTTGAGTGG+CGG 0.650744 4_2:-70400228 None:intergenic
AACCCCGTATGTTCTGCCGG+GGG 0.654362 4_2:+70402253 Msa0619300:CDS
GGGGAAGAGGACTAATGCTG+GGG 0.657842 4_2:+70402647 Msa0619300:CDS
CTTTGTCATAGAATAGTCCA+AGG 0.661429 4_2:-70403052 None:intergenic
CATCTGCACCAAAGACTCCA+CGG 0.662027 4_2:-70401467 None:intergenic
TGCATGCAAGTAAATCGGAA+CGG 0.667279 4_2:-70400166 None:intergenic
TCGAACGGCGGAATCTGCGG+CGG 0.669945 4_2:-70400251 None:intergenic
TGTTTCAGTAAAGATGACGC+AGG 0.689295 4_2:+70402908 Msa0619300:CDS
TTGAGGAATGCATATCATGG+AGG 0.692717 4_2:+70400920 Msa0619300:CDS
GTATTTCCATGTGTTAAGAG+CGG 0.693451 4_2:-70400966 None:intergenic
TATTGGGGATTCGAGACACA+GGG 0.695331 4_2:+70401800 Msa0619300:CDS
AGTATATGACATTGTACACG+AGG 0.703868 4_2:+70401718 Msa0619300:CDS
TGAGGCTGGTGATCGAACGG+CGG 0.706578 4_2:-70400263 None:intergenic
CTTGGCGAATACTTCATCGG+CGG 0.715870 4_2:-70400303 None:intergenic
AATGGAACAAGGAAGGACCA+AGG 0.718500 4_2:-70400337 None:intergenic
ATGAATCCAGACCCATACCG+TGG 0.720666 4_2:+70401450 Msa0619300:CDS
GGGAAGAGGACTAATGCTGG+GGG 0.726558 4_2:+70402648 Msa0619300:CDS
GACATTGTACACGAGGCTGG+TGG 0.771585 4_2:+70401725 Msa0619300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATGTTAAATTAAAATGT+AGG + chr4_2:70403345-70403364 Msa0619300:three_prime_UTR 10.0%
!! GAAAAAGTAAATAAAAAAGT+AGG - chr4_2:70401637-70401656 None:intergenic 15.0%
!! GAGAATAATAATAAAAATTG+CGG - chr4_2:70402589-70402608 None:intergenic 15.0%
!! AAATAGTTATACTTCTTATT+TGG - chr4_2:70402804-70402823 None:intergenic 15.0%
!! ACAAATATATATTCTGCTTA+GGG - chr4_2:70399826-70399845 None:intergenic 20.0%
!! TACAAATATATATTCTGCTT+AGG - chr4_2:70399827-70399846 None:intergenic 20.0%
!!! AATTTATGGTTTGTTAGTTT+CGG - chr4_2:70401384-70401403 None:intergenic 20.0%
!!! TTTTATTTACTTTTTCACCA+TGG + chr4_2:70401641-70401660 Msa0619300:intron 20.0%
!!! TATACTTGTTTTAAATAACC+AGG - chr4_2:70401704-70401723 None:intergenic 20.0%
!! AACATTAATATGAGATACAA+TGG - chr4_2:70402125-70402144 None:intergenic 20.0%
!! TATTAATGTTGTTCTGTAAT+AGG + chr4_2:70402135-70402154 Msa0619300:intron 20.0%
!! ATTAATGTTGTTCTGTAATA+GGG + chr4_2:70402136-70402155 Msa0619300:intron 20.0%
!! AAGATTCAATTCAATACATT+TGG + chr4_2:70402226-70402245 Msa0619300:CDS 20.0%
!!! TTTTGTAATACAGTTCTTTA+CGG + chr4_2:70402422-70402441 Msa0619300:intron 20.0%
!! TTATATAATTTCTCAGTCAT+TGG + chr4_2:70402616-70402635 Msa0619300:intron 20.0%
!! TATAACTATTTACCTTCATA+TGG + chr4_2:70402813-70402832 Msa0619300:intron 20.0%
!! ATAAAGAAATTCCTTGATAA+TGG + chr4_2:70403103-70403122 Msa0619300:three_prime_UTR 20.0%
!!! CTTTTTTTTTAGTAGATAGT+TGG + chr4_2:70403241-70403260 Msa0619300:three_prime_UTR 20.0%
! TAGTTGATTGAATGAAGATT+GGG - chr4_2:70400103-70400122 None:intergenic 25.0%
! ATAGTTGATTGAATGAAGAT+TGG - chr4_2:70400104-70400123 None:intergenic 25.0%
! AATCTTCATTCAATCAACTA+TGG + chr4_2:70400103-70400122 Msa0619300:exon 25.0%
!! TTTTTGATAGAAATGGAACA+AGG - chr4_2:70400351-70400370 None:intergenic 25.0%
!! AGATAAATGAGTTTGATGAT+AGG - chr4_2:70400384-70400403 None:intergenic 25.0%
!! GTTGTGTATTTTGTAAATTC+TGG + chr4_2:70400830-70400849 Msa0619300:CDS 25.0%
! GTATACTGTACAAATGTATT+CGG + chr4_2:70401084-70401103 Msa0619300:intron 25.0%
! TTTAGGAAAAATAACATGGT+TGG - chr4_2:70401110-70401129 None:intergenic 25.0%
! CACATTTAGGAAAAATAACA+TGG - chr4_2:70401114-70401133 None:intergenic 25.0%
!!! CATGTTATTTTTCCTAAATG+TGG + chr4_2:70401112-70401131 Msa0619300:intron 25.0%
!! TTAAAAGCACACTTTACATT+TGG - chr4_2:70401222-70401241 None:intergenic 25.0%
! GTGTTGTCAAGAATAATTTA+TGG - chr4_2:70401398-70401417 None:intergenic 25.0%
!!! ACAACACATTGATTCTTTTA+GGG + chr4_2:70401411-70401430 Msa0619300:intron 25.0%
! TCTATCCTGTTCAATATTTA+AGG + chr4_2:70401596-70401615 Msa0619300:intron 25.0%
!! ATTTAAGGTGGTAATTAGAT+TGG + chr4_2:70401611-70401630 Msa0619300:intron 25.0%
! TATTCCTGATATAGTTACAA+TGG + chr4_2:70401826-70401845 Msa0619300:CDS 25.0%
! TGTATTGAATTGAATCTTCT+GGG - chr4_2:70402224-70402243 None:intergenic 25.0%
! ATGTATTGAATTGAATCTTC+TGG - chr4_2:70402225-70402244 None:intergenic 25.0%
! ATTCAATTCAATACATTTGG+TGG + chr4_2:70402229-70402248 Msa0619300:CDS 25.0%
! TTCAATTCAATACATTTGGT+GGG + chr4_2:70402230-70402249 Msa0619300:CDS 25.0%
! TTAATCTAGCATCTTAGAAA+TGG + chr4_2:70402395-70402414 Msa0619300:intron 25.0%
!!! AACAATTTTTGTTATGATGC+AGG - chr4_2:70402556-70402575 None:intergenic 25.0%
! AAAGGCTTCAATATAAAATC+TGG - chr4_2:70402971-70402990 None:intergenic 25.0%
!! TAAAACTTTTGCTGGATTAA+AGG - chr4_2:70402989-70403008 None:intergenic 25.0%
!! CATTATTTATGAGTTGAATG+TGG + chr4_2:70403266-70403285 Msa0619300:three_prime_UTR 25.0%
ATATATATTCTGCTTAGGGA+AGG - chr4_2:70399822-70399841 None:intergenic 30.0%
GTTTGTGTAGTTGAATATTG+TGG + chr4_2:70400459-70400478 Msa0619300:intron 30.0%
AGATGGCATTCAAAATATCA+GGG - chr4_2:70400576-70400595 None:intergenic 30.0%
AAGATGGCATTCAAAATATC+AGG - chr4_2:70400577-70400596 None:intergenic 30.0%
TCTCTTGTGTTATAGTATGA+TGG + chr4_2:70400729-70400748 Msa0619300:intron 30.0%
! ATTGTCAACTTTTGAATTGC+AGG + chr4_2:70400808-70400827 Msa0619300:intron 30.0%
AGAAATCATACCAAGATTAC+CGG - chr4_2:70400900-70400919 None:intergenic 30.0%
ATCTTGGTATGATTTCTTTG+AGG + chr4_2:70400903-70400922 Msa0619300:CDS 30.0%
! ATGATCCTTTTGAATCCAAT+AGG + chr4_2:70401047-70401066 Msa0619300:intron 30.0%
CTGTAATTTATAACGCCTAT+TGG - chr4_2:70401065-70401084 None:intergenic 30.0%
!!! GTTATTTTTCCTAAATGTGG+TGG + chr4_2:70401115-70401134 Msa0619300:intron 30.0%
!!! CAACTTGTTTTACTCATTTG+AGG + chr4_2:70401175-70401194 Msa0619300:intron 30.0%
!! TTGTTTTACTCATTTGAGGA+CGG + chr4_2:70401179-70401198 Msa0619300:intron 30.0%
! ACTCAAAACTAGTTCTCATT+TGG + chr4_2:70401245-70401264 Msa0619300:intron 30.0%
!!! GACAACACATTGATTCTTTT+AGG + chr4_2:70401410-70401429 Msa0619300:intron 30.0%
TATACTACATAGTACATACC+TGG - chr4_2:70401575-70401594 None:intergenic 30.0%
ATCCTGTTCAATATTTAAGG+TGG + chr4_2:70401599-70401618 Msa0619300:intron 30.0%
TACCACCTTAAATATTGAAC+AGG - chr4_2:70401604-70401623 None:intergenic 30.0%
TTTGCCATTGTAACTATATC+AGG - chr4_2:70401833-70401852 None:intergenic 30.0%
TGATATAGTTACAATGGCAA+AGG + chr4_2:70401832-70401851 Msa0619300:CDS 30.0%
! TTATTTAGTTCCTGAAACCT+TGG + chr4_2:70401879-70401898 Msa0619300:intron 30.0%
TGCTTAATAAACCTCATTAG+AGG - chr4_2:70401937-70401956 None:intergenic 30.0%
TCTAATGAGGTTTATTAAGC+AGG + chr4_2:70401936-70401955 Msa0619300:intron 30.0%
ACACATCGAGCTAAAATTTA+AGG - chr4_2:70401996-70402015 None:intergenic 30.0%
!! TTTCTAGCTATCTATGTACA+TGG + chr4_2:70402456-70402475 Msa0619300:intron 30.0%
ATCTATGTACATGGATTCTT+AGG + chr4_2:70402465-70402484 Msa0619300:intron 30.0%
GATCATGATATGTTATAGTC+AGG + chr4_2:70402525-70402544 Msa0619300:intron 30.0%
!! GTCTTGTTTGAAAAACTTAG+AGG + chr4_2:70402724-70402743 Msa0619300:CDS 30.0%
GGAACTTATATTAGAAAGAG+CGG - chr4_2:70402783-70402802 None:intergenic 30.0%
AAGTTCTACAATCCATATGA+AGG - chr4_2:70402828-70402847 None:intergenic 30.0%
! TTCATATGGATTGTAGAACT+TGG + chr4_2:70402827-70402846 Msa0619300:intron 30.0%
TCATCTTTACTGAAACACAT+TGG - chr4_2:70402905-70402924 None:intergenic 30.0%
! CATTGGAATAAAACTTTTGC+TGG - chr4_2:70402997-70403016 None:intergenic 30.0%
!! AAGAAATTCCTTGATAATGG+CGG + chr4_2:70403106-70403125 Msa0619300:three_prime_UTR 30.0%
AAATATTCACCCCATTGAAA+TGG + chr4_2:70403191-70403210 Msa0619300:three_prime_UTR 30.0%
AATATTCACCCCATTGAAAT+GGG + chr4_2:70403192-70403211 Msa0619300:three_prime_UTR 30.0%
AAGGAAAAACCCATTTCAAT+GGG - chr4_2:70403204-70403223 None:intergenic 30.0%
!! AGAAAGTACCAACTATAAGA+AGG - chr4_2:70403223-70403242 None:intergenic 30.0%
!! TGGACTAGTGTATATAATTC+TGG + chr4_2:70403286-70403305 Msa0619300:three_prime_UTR 30.0%
! GGACTAGTGTATATAATTCT+GGG + chr4_2:70403287-70403306 Msa0619300:three_prime_UTR 30.0%
GTATATAATTCTGGGTTTCA+TGG + chr4_2:70403295-70403314 Msa0619300:three_prime_UTR 30.0%
TGATAGAAATGGAACAAGGA+AGG - chr4_2:70400347-70400366 None:intergenic 35.0%
!!! TGACGGGTTTTTGATAGAAA+TGG - chr4_2:70400358-70400377 None:intergenic 35.0%
! AGTTTGATGATAGGAACTGA+CGG - chr4_2:70400375-70400394 None:intergenic 35.0%
TGTGTAGTTGAATATTGTGG+AGG + chr4_2:70400462-70400481 Msa0619300:intron 35.0%
GTGTAGTTGAATATTGTGGA+GGG + chr4_2:70400463-70400482 Msa0619300:intron 35.0%
TGTAGTTGAATATTGTGGAG+GGG + chr4_2:70400464-70400483 Msa0619300:intron 35.0%
CAATATCTGTATGATGAAGC+TGG + chr4_2:70400493-70400512 Msa0619300:CDS 35.0%
AAGTTTACTCTGCTCAAAGA+TGG - chr4_2:70400593-70400612 None:intergenic 35.0%
AGCATGGTGTAGATAAATAG+TGG - chr4_2:70400629-70400648 None:intergenic 35.0%
! TTTAAGATTTCCAGGCATCT+TGG - chr4_2:70400680-70400699 None:intergenic 35.0%
!! TGACTCACTTTAAGATTTCC+AGG - chr4_2:70400688-70400707 None:intergenic 35.0%
!! CTCTGGTTTGTTAATGTGTT+GGG + chr4_2:70400781-70400800 Msa0619300:intron 35.0%
!! TGGTTCTGAAGCAAATGAAT+TGG + chr4_2:70400850-70400869 Msa0619300:CDS 35.0%
AAATGAATTGGCAATGCTGA+TGG + chr4_2:70400862-70400881 Msa0619300:CDS 35.0%
AGATTGTATACCGGTAATCT+TGG + chr4_2:70400887-70400906 Msa0619300:CDS 35.0%
! TCTTTGAGGAATGCATATCA+TGG + chr4_2:70400917-70400936 Msa0619300:CDS 35.0%
GTATTTCCATGTGTTAAGAG+CGG - chr4_2:70400969-70400988 None:intergenic 35.0%
GATTCAAAAGGATCATATGC+AGG - chr4_2:70401043-70401062 None:intergenic 35.0%
TAACGCCTATTGGATTCAAA+AGG - chr4_2:70401055-70401074 None:intergenic 35.0%
!!! GATTTTTTATGACCAGCGTT+TGG + chr4_2:70401267-70401286 Msa0619300:intron 35.0%
GACATCTTTAGCATAGCTAT+TGG - chr4_2:70401493-70401512 None:intergenic 35.0%
! TCCAAGACCATATTGACTAT+GGG + chr4_2:70401511-70401530 Msa0619300:CDS 35.0%
ATTCATAGCTGAAACAATCC+AGG + chr4_2:70401554-70401573 Msa0619300:CDS 35.0%
! TTTTCACCATGGCTTATTCT+AGG + chr4_2:70401652-70401671 Msa0619300:intron 35.0%
TTTCACCATGGCTTATTCTA+GGG + chr4_2:70401653-70401672 Msa0619300:intron 35.0%
AGTATATGACATTGTACACG+AGG + chr4_2:70401718-70401737 Msa0619300:CDS 35.0%
GCACTTCAAATGCATAACTA+AGG - chr4_2:70401907-70401926 None:intergenic 35.0%
GTTGTTCTGTAATAGGGTAT+TGG + chr4_2:70402142-70402161 Msa0619300:intron 35.0%
!! TACATGGATTCTTAGGTTGA+GGG + chr4_2:70402472-70402491 Msa0619300:intron 35.0%
ACATATCATGATCAGTTACC+AGG - chr4_2:70402518-70402537 None:intergenic 35.0%
TCTTTACTGAAACACATTGG+TGG - chr4_2:70402902-70402921 None:intergenic 35.0%
AAATCTGCAAGCAAAGAGAA+TGG - chr4_2:70403021-70403040 None:intergenic 35.0%
! TTTGCTTGCAGATTTTCTTG+TGG + chr4_2:70403026-70403045 Msa0619300:intron 35.0%
CTTTGTCATAGAATAGTCCA+AGG - chr4_2:70403055-70403074 None:intergenic 35.0%
AGGAAAAACCCATTTCAATG+GGG - chr4_2:70403203-70403222 None:intergenic 35.0%
GAAGGAAAAACCCATTTCAA+TGG - chr4_2:70403205-70403224 None:intergenic 35.0%
! GGGTTTTTCCTTCTTATAGT+TGG + chr4_2:70403212-70403231 Msa0619300:three_prime_UTR 35.0%
! TGATCTGAAATTTAGTCAGC+AGG - chr4_2:70403393-70403412 None:intergenic 35.0%
TAAATCGGAACGGTTAGGTT+TGG - chr4_2:70400159-70400178 None:intergenic 40.0%
TGCATGCAAGTAAATCGGAA+CGG - chr4_2:70400169-70400188 None:intergenic 40.0%
AGGTCTGCATGCAAGTAAAT+CGG - chr4_2:70400174-70400193 None:intergenic 40.0%
! GTTTGATGATAGGAACTGAC+GGG - chr4_2:70400374-70400393 None:intergenic 40.0%
! GTTACCTTGATGCTTTTGCT+GGG + chr4_2:70400521-70400540 Msa0619300:CDS 40.0%
ATATGATTGCATGATGCCTC+TGG + chr4_2:70400764-70400783 Msa0619300:intron 40.0%
CCAACACATTAACAAACCAG+AGG - chr4_2:70400783-70400802 None:intergenic 40.0%
!! CCTCTGGTTTGTTAATGTGT+TGG + chr4_2:70400780-70400799 Msa0619300:intron 40.0%
CTGATGGCAAGATTGTATAC+CGG + chr4_2:70400878-70400897 Msa0619300:CDS 40.0%
TTGAGGAATGCATATCATGG+AGG + chr4_2:70400920-70400939 Msa0619300:CDS 40.0%
! TGGAGGAAGTTCTAGTACAA+TGG + chr4_2:70400937-70400956 Msa0619300:CDS 40.0%
! GGAGGAAGTTCTAGTACAAT+GGG + chr4_2:70400938-70400957 Msa0619300:CDS 40.0%
AGAAACAAACCTCAGGAAGT+GGG - chr4_2:70400991-70401010 None:intergenic 40.0%
AAGAAACAAACCTCAGGAAG+TGG - chr4_2:70400992-70401011 None:intergenic 40.0%
AGCATGAAGAAACAAACCTC+AGG - chr4_2:70400998-70401017 None:intergenic 40.0%
TTTCCTAAATGTGGTGGTTG+CGG + chr4_2:70401121-70401140 Msa0619300:intron 40.0%
TATCTATGATCAGCCCACAA+AGG - chr4_2:70401294-70401313 None:intergenic 40.0%
! GTGGGCTGATCATAGATATT+AGG + chr4_2:70401296-70401315 Msa0619300:intron 40.0%
! GTCCAAGACCATATTGACTA+TGG + chr4_2:70401510-70401529 Msa0619300:CDS 40.0%
TCCCATAGTCAATATGGTCT+TGG - chr4_2:70401515-70401534 None:intergenic 40.0%
CTGAAGTCCCATAGTCAATA+TGG - chr4_2:70401521-70401540 None:intergenic 40.0%
! CATATTGACTATGGGACTTC+AGG + chr4_2:70401519-70401538 Msa0619300:CDS 40.0%
TTCACCATGGCTTATTCTAG+GGG + chr4_2:70401654-70401673 Msa0619300:intron 40.0%
ATTGCAGATGAAGTGCAAAC+TGG + chr4_2:70401755-70401774 Msa0619300:CDS 40.0%
GATGAAGTGCAAACTGGATT+TGG + chr4_2:70401761-70401780 Msa0619300:CDS 40.0%
! AATGCATAACTAAGGTGCCA+AGG - chr4_2:70401899-70401918 None:intergenic 40.0%
!! CTGTAATAGGGTATTGGCAA+TGG + chr4_2:70402148-70402167 Msa0619300:intron 40.0%
! ATTGGCAATGGTTTGCCATT+AGG + chr4_2:70402160-70402179 Msa0619300:CDS 40.0%
GTTGTAACTACAGCTCCTAA+TGG - chr4_2:70402178-70402197 None:intergenic 40.0%
TCCAGAAATTGCAAGTGTGA+TGG + chr4_2:70402198-70402217 Msa0619300:CDS 40.0%
! GTACATGGATTCTTAGGTTG+AGG + chr4_2:70402471-70402490 Msa0619300:intron 40.0%
CAGGCTCAAATCAAGTAATG+AGG - chr4_2:70402499-70402518 None:intergenic 40.0%
! CTCATTACTTGATTTGAGCC+TGG + chr4_2:70402497-70402516 Msa0619300:intron 40.0%
!!! TTGCAGGTGTCTTGTTTTTC+CGG - chr4_2:70402690-70402709 None:intergenic 40.0%
GAAAAACAAGACACCTGCAA+AGG + chr4_2:70402690-70402709 Msa0619300:CDS 40.0%
! TAGAACTTGGCATTCTAGCT+GGG + chr4_2:70402840-70402859 Msa0619300:intron 40.0%
! GACTGCATGGAAATGTTTTC+AGG + chr4_2:70402870-70402889 Msa0619300:CDS 40.0%
TGTTTCAGTAAAGATGACGC+AGG + chr4_2:70402908-70402927 Msa0619300:CDS 40.0%
CAAGCAAAGAGAATGGTCAT+TGG - chr4_2:70403014-70403033 None:intergenic 40.0%
! AGATTTTCTTGTGGATGCCT+TGG + chr4_2:70403035-70403054 Msa0619300:intron 40.0%
GAAATGATTATGCATCCTGC+TGG + chr4_2:70403079-70403098 Msa0619300:exon 40.0%
AGGAATTTCTTTATGCCAGC+AGG - chr4_2:70403097-70403116 None:intergenic 40.0%
GCAAGTAAATCGGAACGGTT+AGG - chr4_2:70400164-70400183 None:intergenic 45.0%
AGTAGTGATGGTTTGAGTGG+CGG - chr4_2:70400231-70400250 None:intergenic 45.0%
GATGGTCCATTATACGGATG+AGG - chr4_2:70400284-70400303 None:intergenic 45.0%
ACGCTTGGCGAATACTTCAT+CGG - chr4_2:70400309-70400328 None:intergenic 45.0%
ACCAAGGAACTGTTTACGCT+TGG - chr4_2:70400324-70400343 None:intergenic 45.0%
AATGGAACAAGGAAGGACCA+AGG - chr4_2:70400340-70400359 None:intergenic 45.0%
! CGTTACCTTGATGCTTTTGC+TGG + chr4_2:70400520-70400539 Msa0619300:CDS 45.0%
!! CAATCCCAGCAAAAGCATCA+AGG - chr4_2:70400528-70400547 None:intergenic 45.0%
!! GGGATTGTTACTGTTTCTGC+TGG + chr4_2:70400541-70400560 Msa0619300:CDS 45.0%
AAGATTTCCAGGCATCTTGG+CGG - chr4_2:70400677-70400696 None:intergenic 45.0%
ATGGAAATACCCACTTCCTG+AGG + chr4_2:70400979-70400998 Msa0619300:CDS 45.0%
TCACCATGGCTTATTCTAGG+GGG + chr4_2:70401655-70401674 Msa0619300:intron 45.0%
TATGACATTGTACACGAGGC+TGG + chr4_2:70401722-70401741 Msa0619300:CDS 45.0%
GTGTCTCGAATCCCCAATAA+TGG - chr4_2:70401799-70401818 None:intergenic 45.0%
TTATTGGGGATTCGAGACAC+AGG + chr4_2:70401799-70401818 Msa0619300:CDS 45.0%
TATTGGGGATTCGAGACACA+GGG + chr4_2:70401800-70401819 Msa0619300:CDS 45.0%
! AACTAAGGTGCCAAGGTTTC+AGG - chr4_2:70401892-70401911 None:intergenic 45.0%
GCCATCACACTTGCAATTTC+TGG - chr4_2:70402202-70402221 None:intergenic 45.0%
!! AGGTTCTGGATAACGAGAAG+CGG + chr4_2:70402290-70402309 Msa0619300:CDS 45.0%
!! TCTCAGTCATTGGTGATGTG+AGG + chr4_2:70402626-70402645 Msa0619300:intron 45.0%
!! CTCAGTCATTGGTGATGTGA+GGG + chr4_2:70402627-70402646 Msa0619300:intron 45.0%
!! TCAGTCATTGGTGATGTGAG+GGG + chr4_2:70402628-70402647 Msa0619300:intron 45.0%
!!! AGGTGTCTTGTTTTTCCGGT+CGG - chr4_2:70402686-70402705 None:intergenic 45.0%
GTAGAACTTGGCATTCTAGC+TGG + chr4_2:70402839-70402858 Msa0619300:intron 45.0%
TCAGTAAAGATGACGCAGGT+AGG + chr4_2:70402912-70402931 Msa0619300:intron 45.0%
GCAATTTGCCGCCATTATCA+AGG - chr4_2:70403117-70403136 None:intergenic 45.0%
AATGGCGGCAAATTGCTACA+TGG + chr4_2:70403121-70403140 Msa0619300:three_prime_UTR 45.0%
CTGGGTTTCATGGCATCAAA+AGG + chr4_2:70403305-70403324 Msa0619300:three_prime_UTR 45.0%
GAGGATCGGAGAGAAGAGAA+AGG - chr4_2:70400194-70400213 None:intergenic 50.0%
CGGAGTAGTGATGGTTTGAG+TGG - chr4_2:70400234-70400253 None:intergenic 50.0%
CACCAGCCTCATCCGTATAA+TGG + chr4_2:70400275-70400294 Msa0619300:CDS 50.0%
GTCCATTATACGGATGAGGC+TGG - chr4_2:70400280-70400299 None:intergenic 50.0%
TCGGCGGATGGTCCATTATA+CGG - chr4_2:70400290-70400309 None:intergenic 50.0%
CTTGGCGAATACTTCATCGG+CGG - chr4_2:70400306-70400325 None:intergenic 50.0%
GCCAAGCGTAAACAGTTCCT+TGG + chr4_2:70400320-70400339 Msa0619300:CDS 50.0%
CGGCGAAATCAGCAATAGCA+TGG - chr4_2:70400645-70400664 None:intergenic 50.0%
!! TGCTATTGCTGATTTCGCCG+AGG + chr4_2:70400645-70400664 Msa0619300:CDS 50.0%
GTCTCACCGCTCTTAACACA+TGG + chr4_2:70400960-70400979 Msa0619300:CDS 50.0%
AGTCCGCAACCACCACATTT+AGG - chr4_2:70401127-70401146 None:intergenic 50.0%
ACCAGCGTTTGGACCTTTGT+GGG + chr4_2:70401278-70401297 Msa0619300:intron 50.0%
ATGAATCCAGACCCATACCG+TGG + chr4_2:70401450-70401469 Msa0619300:CDS 50.0%
CACCAAAGACTCCACGGTAT+GGG - chr4_2:70401464-70401483 None:intergenic 50.0%
CATCTGCACCAAAGACTCCA+CGG - chr4_2:70401470-70401489 None:intergenic 50.0%
GGGACTTCAGGAAAAGTTGC+TGG + chr4_2:70401531-70401550 Msa0619300:CDS 50.0%
CAACCCCCTAGAATAAGCCA+TGG - chr4_2:70401661-70401680 None:intergenic 50.0%
! CATGGCTTATTCTAGGGGGT+TGG + chr4_2:70401659-70401678 Msa0619300:intron 50.0%
CCCAATAATGGCTTCCTGTG+CGG - chr4_2:70401787-70401806 None:intergenic 50.0%
CCGCACAGGAAGCCATTATT+GGG + chr4_2:70401784-70401803 Msa0619300:CDS 50.0%
CGCACAGGAAGCCATTATTG+GGG + chr4_2:70401785-70401804 Msa0619300:CDS 50.0%
GTGCAGCATTGCCTCTAATG+AGG + chr4_2:70401923-70401942 Msa0619300:intron 50.0%
ACTTGCAGTGCTCAAGGTTC+TGG + chr4_2:70402276-70402295 Msa0619300:CDS 50.0%
GTGATCTCAAACGCTCAAGC+AGG - chr4_2:70402345-70402364 None:intergenic 50.0%
!! ATTGGTGATGTGAGGGGAAG+AGG + chr4_2:70402634-70402653 Msa0619300:CDS 50.0%
AGGGGAAGAGGACTAATGCT+GGG + chr4_2:70402646-70402665 Msa0619300:CDS 50.0%
ACAGCAGTTTCAGCCTTTGC+AGG - chr4_2:70402706-70402725 None:intergenic 50.0%
! CTTGGCATTCTAGCTGGGAA+AGG + chr4_2:70402845-70402864 Msa0619300:CDS 50.0%
AGTGATGGTTTGAGTGGCGG+TGG - chr4_2:70400228-70400247 None:intergenic 55.0%
AATCTGCGGCGGAGTAGTGA+TGG - chr4_2:70400243-70400262 None:intergenic 55.0%
TGATCGAACGGCGGAATCTG+CGG - chr4_2:70400257-70400276 None:intergenic 55.0%
GGATGAGGCTGGTGATCGAA+CGG - chr4_2:70400269-70400288 None:intergenic 55.0%
GCGAATACTTCATCGGCGGA+TGG - chr4_2:70400302-70400321 None:intergenic 55.0%
!! TGCTGATTTCGCCGAGGCTT+TGG + chr4_2:70400651-70400670 Msa0619300:CDS 55.0%
GACCAGCGTTTGGACCTTTG+TGG + chr4_2:70401277-70401296 Msa0619300:intron 55.0%
AAGACTCCACGGTATGGGTC+TGG - chr4_2:70401459-70401478 None:intergenic 55.0%
GACCCATACCGTGGAGTCTT+TGG + chr4_2:70401459-70401478 Msa0619300:CDS 55.0%
GCACCAAAGACTCCACGGTA+TGG - chr4_2:70401465-70401484 None:intergenic 55.0%
! GGCTTATTCTAGGGGGTTGG+AGG + chr4_2:70401662-70401681 Msa0619300:intron 55.0%
GGAGCAGTTGAACTCGTACC+TGG + chr4_2:70401683-70401702 Msa0619300:CDS 55.0%
GACATTGTACACGAGGCTGG+TGG + chr4_2:70401725-70401744 Msa0619300:CDS 55.0%
CAAACTGGATTTGGCCGCAC+AGG + chr4_2:70401770-70401789 Msa0619300:CDS 55.0%
GCCGCACAGGAAGCCATTAT+TGG + chr4_2:70401783-70401802 Msa0619300:CDS 55.0%
AAGTCCCCCGGCAGAACATA+CGG - chr4_2:70402260-70402279 None:intergenic 55.0%
TCTGGATAACGAGAAGCGGC+AGG + chr4_2:70402294-70402313 Msa0619300:CDS 55.0%
! CAGGCTCATTGCGCTGATGT+TGG + chr4_2:70402313-70402332 Msa0619300:CDS 55.0%
GAGGGGAAGAGGACTAATGC+TGG + chr4_2:70402645-70402664 Msa0619300:CDS 55.0%
GGGGAAGAGGACTAATGCTG+GGG + chr4_2:70402647-70402666 Msa0619300:CDS 55.0%
GGGAAGAGGACTAATGCTGG+GGG + chr4_2:70402648-70402667 Msa0619300:CDS 55.0%
!! GGGTAGAGCTTGTTACCGAC+CGG + chr4_2:70402668-70402687 Msa0619300:CDS 55.0%
! GGCATTCTAGCTGGGAAAGG+AGG + chr4_2:70402848-70402867 Msa0619300:CDS 55.0%
GATGGTTTGAGTGGCGGTGG+CGG - chr4_2:70400225-70400244 None:intergenic 60.0%
TGAGGCTGGTGATCGAACGG+CGG - chr4_2:70400266-70400285 None:intergenic 60.0%
CATCTTGGCGGCCAAAGCCT+CGG - chr4_2:70400665-70400684 None:intergenic 60.0%
GCCCACAAAGGTCCAAACGC+TGG - chr4_2:70401282-70401301 None:intergenic 60.0%
GGGAACCCCGTATGTTCTGC+CGG + chr4_2:70402250-70402269 Msa0619300:CDS 60.0%
GGAACCCCGTATGTTCTGCC+GGG + chr4_2:70402251-70402270 Msa0619300:CDS 60.0%
GAACCCCGTATGTTCTGCCG+GGG + chr4_2:70402252-70402271 Msa0619300:CDS 60.0%
AACCCCGTATGTTCTGCCGG+GGG + chr4_2:70402253-70402272 Msa0619300:CDS 60.0%
AGTCCCCCGGCAGAACATAC+GGG - chr4_2:70402259-70402278 None:intergenic 60.0%
! CTTGAGCACTGCAAGTCCCC+CGG - chr4_2:70402272-70402291 None:intergenic 60.0%
GCTGGGAAAGGAGGACTGCA+TGG + chr4_2:70402857-70402876 Msa0619300:CDS 60.0%
TCGAACGGCGGAATCTGCGG+CGG - chr4_2:70400254-70400273 None:intergenic 65.0%
GCTTTGGCCGCCAAGATGCC+TGG + chr4_2:70400667-70400686 Msa0619300:CDS 65.0%
GTCCCCCGGCAGAACATACG+GGG - chr4_2:70402258-70402277 None:intergenic 65.0%
CGGGGGACTTGCAGTGCTCA+AGG + chr4_2:70402270-70402289 Msa0619300:CDS 65.0%
!! TGGCGGTGGCGGAGGAGGAT+CGG - chr4_2:70400208-70400227 None:intergenic 70.0%
! TTGAGTGGCGGTGGCGGTGG+CGG - chr4_2:70400219-70400238 None:intergenic 70.0%
! GGTTTGAGTGGCGGTGGCGG+TGG - chr4_2:70400222-70400241 None:intergenic 70.0%
!! AGTGGCGGTGGCGGTGGCGG+AGG - chr4_2:70400216-70400235 None:intergenic 80.0%
!!! GGCGGTGGCGGTGGCGGAGG+AGG - chr4_2:70400213-70400232 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 70399806 70403428 70399806 ID=Msa0619300;Name=Msa0619300
chr4_2 mRNA 70399806 70403428 70399806 ID=Msa0619300-mRNA-1;Parent=Msa0619300;Name=Msa0619300-mRNA-1;_AED=0.32;_eAED=0.32;_QI=316|1|1|1|1|1|9|348|482
chr4_2 exon 70399806 70400373 70399806 ID=Msa0619300-mRNA-1:exon:20536;Parent=Msa0619300-mRNA-1
chr4_2 exon 70400469 70400699 70400469 ID=Msa0619300-mRNA-1:exon:20537;Parent=Msa0619300-mRNA-1
chr4_2 exon 70400830 70401000 70400830 ID=Msa0619300-mRNA-1:exon:20538;Parent=Msa0619300-mRNA-1
chr4_2 exon 70401432 70401575 70401432 ID=Msa0619300-mRNA-1:exon:20539;Parent=Msa0619300-mRNA-1
chr4_2 exon 70401674 70401853 70401674 ID=Msa0619300-mRNA-1:exon:20540;Parent=Msa0619300-mRNA-1
chr4_2 exon 70402157 70402382 70402157 ID=Msa0619300-mRNA-1:exon:20541;Parent=Msa0619300-mRNA-1
chr4_2 exon 70402632 70402745 70402632 ID=Msa0619300-mRNA-1:exon:20542;Parent=Msa0619300-mRNA-1
chr4_2 exon 70402843 70402929 70402843 ID=Msa0619300-mRNA-1:exon:20543;Parent=Msa0619300-mRNA-1
chr4_2 exon 70403037 70403428 70403037 ID=Msa0619300-mRNA-1:exon:20544;Parent=Msa0619300-mRNA-1
chr4_2 five_prime_UTR 70399806 70400121 70399806 ID=Msa0619300-mRNA-1:five_prime_utr;Parent=Msa0619300-mRNA-1
chr4_2 CDS 70400122 70400373 70400122 ID=Msa0619300-mRNA-1:cds;Parent=Msa0619300-mRNA-1
chr4_2 CDS 70400469 70400699 70400469 ID=Msa0619300-mRNA-1:cds;Parent=Msa0619300-mRNA-1
chr4_2 CDS 70400830 70401000 70400830 ID=Msa0619300-mRNA-1:cds;Parent=Msa0619300-mRNA-1
chr4_2 CDS 70401432 70401575 70401432 ID=Msa0619300-mRNA-1:cds;Parent=Msa0619300-mRNA-1
chr4_2 CDS 70401674 70401853 70401674 ID=Msa0619300-mRNA-1:cds;Parent=Msa0619300-mRNA-1
chr4_2 CDS 70402157 70402382 70402157 ID=Msa0619300-mRNA-1:cds;Parent=Msa0619300-mRNA-1
chr4_2 CDS 70402632 70402745 70402632 ID=Msa0619300-mRNA-1:cds;Parent=Msa0619300-mRNA-1
chr4_2 CDS 70402843 70402929 70402843 ID=Msa0619300-mRNA-1:cds;Parent=Msa0619300-mRNA-1
chr4_2 CDS 70403037 70403080 70403037 ID=Msa0619300-mRNA-1:cds;Parent=Msa0619300-mRNA-1
chr4_2 three_prime_UTR 70403081 70403428 70403081 ID=Msa0619300-mRNA-1:three_prime_utr;Parent=Msa0619300-mRNA-1
Gene Sequence

>Msa0619300

ATGGCTGCGTTACAATCTCTACTCAAGAGAACAACCAAACCTAACCGTTCCGATTTACTTGCATGCAGACCTTTCTCTTCTCTCCGATCCTCCTCCGCCACCGCCACCGCCACTCAAACCATCACTACTCCGCCGCAGATTCCGCCGTTCGATCACCAGCCTCATCCGTATAATGGACCATCCGCCGATGAAGTATTCGCCAAGCGTAAACAGTTCCTTGGTCCTTCCTTGTTCCATTTCTATCAAAAACCCTTGAATATTGTGGAGGGGAAGATGCAATATCTGTATGATGAAGCTGGAAGACGTTACCTTGATGCTTTTGCTGGGATTGTTACTGTTTCTGCTGGACACTGTCACCCTGATATTTTGAATGCCATCTTTGAGCAGAGTAAACTTTTGCAGCATGCAACCACTATTTATCTACACCATGCTATTGCTGATTTCGCCGAGGCTTTGGCCGCCAAGATGCCTGGAAATCTTAAAGTTGTGTATTTTGTAAATTCTGGTTCTGAAGCAAATGAATTGGCAATGCTGATGGCAAGATTGTATACCGGTAATCTTGGTATGATTTCTTTGAGGAATGCATATCATGGAGGAAGTTCTAGTACAATGGGTCTCACCGCTCTTAACACATGGAAATACCCACTTCCTGAGGGTGAAATTCATCATGTTATGAATCCAGACCCATACCGTGGAGTCTTTGGTGCAGATGCCAATAGCTATGCTAAAGATGTCCAAGACCATATTGACTATGGGACTTCAGGAAAAGTTGCTGGATTCATAGCTGAAACAATCCAGGGGGTTGGAGGAGCAGTTGAACTCGTACCTGGTTATTTAAAACAAGTATATGACATTGTACACGAGGCTGGTGGTGTATGCATTGCAGATGAAGTGCAAACTGGATTTGGCCGCACAGGAAGCCATTATTGGGGATTCGAGACACAGGGTGTTATTCCTGATATAGTTACAATGGCAAAGGGTATTGGCAATGGTTTGCCATTAGGAGCTGTAGTTACAACTCCAGAAATTGCAAGTGTGATGGCCCAGAAGATTCAATTCAATACATTTGGTGGGAACCCCGTATGTTCTGCCGGGGGACTTGCAGTGCTCAAGGTTCTGGATAACGAGAAGCGGCAGGCTCATTGCGCTGATGTTGGTTCTCACCTGCTTGAGCGTTTGAGATCACTTCAGCAACGACATGACATCATTGGTGATGTGAGGGGAAGAGGACTAATGCTGGGGGTAGAGCTTGTTACCGACCGGAAAAACAAGACACCTGCAAAGGCTGAAACTGCTGTCTTGTTTGAAAAACTTAGAGAACTTGGCATTCTAGCTGGGAAAGGAGGACTGCATGGAAATGTTTTCAGGATTAAGCCACCAATGTGTTTCAGTAAAGATGACGCAGATTTTCTTGTGGATGCCTTGGACTATTCTATGACAAAGTTGTGA
Protein sequence

>Msa0619300

MAALQSLLKRTTKPNRSDLLACRPFSSLRSSSATATATQTITTPPQIPPFDHQPHPYNGPSADEVFAKRKQFLGPSLFHFYQKPLNIVEGKMQYLYDEAGRRYLDAFAGIVTVSAGHCHPDILNAIFEQSKLLQHATTIYLHHAIADFAEALAAKMPGNLKVVYFVNSGSEANELAMLMARLYTGNLGMISLRNAYHGGSSSTMGLTALNTWKYPLPEGEIHHVMNPDPYRGVFGADANSYAKDVQDHIDYGTSGKVAGFIAETIQGVGGAVELVPGYLKQVYDIVHEAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIASVMAQKIQFNTFGGNPVCSAGGLAVLKVLDNEKRQAHCADVGSHLLERLRSLQQRHDIIGDVRGRGLMLGVELVTDRKNKTPAKAETAVLFEKLRELGILAGKGGLHGNVFRIKPPMCFSKDDADFLVDALDYSMTKL*