Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0515340 | XP_003602022.1 | 99.449 | 363 | 2 | 0 | 1 | 363 | 1 | 363 | 0.0 | 751 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0515340 | sp|Q39237|TGA1_ARATH | 67.663 | 368 | 114 | 2 | 1 | 363 | 1 | 368 | 0.0 | 515 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0515340 | G7J4F0 | 99.449 | 363 | 2 | 0 | 1 | 363 | 1 | 363 | 0.0 | 751 |
Gene ID | Type | Classification |
---|---|---|
Msa0515340 | TF | bZIP |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0000910 | Msa0515340 | 0.837509 | 4.985632e-57 | -8.615850e-47 |
Msa0024400 | Msa0515340 | 0.839141 | 1.892296e-57 | -8.615850e-47 |
Msa0032470 | Msa0515340 | 0.843414 | 1.421812e-58 | -8.615850e-47 |
Msa0071250 | Msa0515340 | 0.821954 | 3.067028e-53 | -8.615850e-47 |
Msa0076290 | Msa0515340 | 0.806487 | 8.032561e-50 | -8.615850e-47 |
Msa0091730 | Msa0515340 | 0.808372 | 3.198543e-50 | -8.615850e-47 |
Msa0106710 | Msa0515340 | 0.800979 | 1.117573e-48 | -8.615850e-47 |
Msa0120280 | Msa0515340 | 0.805246 | 1.464166e-49 | -8.615850e-47 |
Msa0122530 | Msa0515340 | 0.812200 | 4.778717e-51 | -8.615850e-47 |
Msa0126790 | Msa0515340 | 0.807507 | 4.886783e-50 | -8.615850e-47 |
Msa0163510 | Msa0515340 | 0.824131 | 9.532036e-54 | -8.615850e-47 |
Msa0171870 | Msa0515340 | 0.813394 | 2.617441e-51 | -8.615850e-47 |
Msa0192640 | Msa0515340 | 0.804865 | 1.759711e-49 | -8.615850e-47 |
Msa0194920 | Msa0515340 | 0.815507 | 8.922549e-52 | -8.615850e-47 |
Msa0204960 | Msa0515340 | 0.829211 | 5.842898e-55 | -8.615850e-47 |
Msa0215990 | Msa0515340 | 0.816371 | 5.723727e-52 | -8.615850e-47 |
Msa0217670 | Msa0515340 | 0.859028 | 5.490820e-63 | -8.615850e-47 |
Msa0223330 | Msa0515340 | 0.806413 | 8.327696e-50 | -8.615850e-47 |
Msa0237300 | Msa0515340 | 0.811248 | 7.699477e-51 | -8.615850e-47 |
Msa0374220 | Msa0515340 | 0.882530 | 9.639884e-71 | -8.615850e-47 |
Msa0376630 | Msa0515340 | 0.801706 | 7.932480e-49 | -8.615850e-47 |
Msa0385500 | Msa0515340 | 0.825540 | 4.433797e-54 | -8.615850e-47 |
Msa0388730 | Msa0515340 | 0.809728 | 1.639696e-50 | -8.615850e-47 |
Msa0390480 | Msa0515340 | 0.814811 | 1.274036e-51 | -8.615850e-47 |
Msa0395980 | Msa0515340 | 0.821253 | 4.454933e-53 | -8.615850e-47 |
Msa0403770 | Msa0515340 | 0.826753 | 2.281947e-54 | -8.615850e-47 |
Msa0416960 | Msa0515340 | 0.801279 | 9.704479e-49 | -8.615850e-47 |
Msa0432160 | Msa0515340 | 0.812753 | 3.618088e-51 | -8.615850e-47 |
Msa0432500 | Msa0515340 | 0.810599 | 1.063906e-50 | -8.615850e-47 |
Msa0439960 | Msa0515340 | 0.803853 | 2.858428e-49 | -8.615850e-47 |
Msa0440510 | Msa0515340 | 0.820380 | 7.072299e-53 | -8.615850e-47 |
Msa0469890 | Msa0515340 | 0.878883 | 1.957794e-69 | -8.615850e-47 |
Msa0470880 | Msa0515340 | 0.800632 | 1.315769e-48 | -8.615850e-47 |
Msa0476680 | Msa0515340 | 0.806008 | 1.013131e-49 | -8.615850e-47 |
Msa0478370 | Msa0515340 | 0.811903 | 5.547582e-51 | -8.615850e-47 |
Msa0482040 | Msa0515340 | 0.833427 | 5.367573e-56 | -8.615850e-47 |
Msa0244980 | Msa0515340 | 0.810297 | 1.236423e-50 | -8.615850e-47 |
Msa0257490 | Msa0515340 | 0.819341 | 1.222070e-52 | -8.615850e-47 |
Msa0267920 | Msa0515340 | 0.808881 | 2.491155e-50 | -8.615850e-47 |
Msa0274720 | Msa0515340 | 0.807995 | 3.849883e-50 | -8.615850e-47 |
Msa0296790 | Msa0515340 | 0.850086 | 2.131900e-60 | -8.615850e-47 |
Msa0315520 | Msa0515340 | 0.802078 | 6.655096e-49 | -8.615850e-47 |
Msa0341480 | Msa0515340 | 0.803668 | 3.122965e-49 | -8.615850e-47 |
Msa0361850 | Msa0515340 | 0.808361 | 3.216314e-50 | -8.615850e-47 |
Msa0362890 | Msa0515340 | 0.806307 | 8.766457e-50 | -8.615850e-47 |
Msa0363640 | Msa0515340 | 0.806821 | 6.829428e-50 | -8.615850e-47 |
Msa0482940 | Msa0515340 | 0.804502 | 2.094751e-49 | -8.615850e-47 |
Msa0485710 | Msa0515340 | 0.810821 | 9.527269e-51 | -8.615850e-47 |
Msa0491000 | Msa0515340 | 0.828752 | 7.550589e-55 | -8.615850e-47 |
Msa0515340 | Msa0521010 | 0.801516 | 8.679071e-49 | -8.615850e-47 |
Msa0515340 | Msa0522500 | 0.807552 | 4.779699e-50 | -8.615850e-47 |
Msa0515340 | Msa0526020 | 0.818306 | 2.100166e-52 | -8.615850e-47 |
Msa0515340 | Msa0527540 | 0.823320 | 1.476216e-53 | -8.615850e-47 |
Msa0515340 | Msa0542560 | 0.854835 | 9.445780e-62 | -8.615850e-47 |
Msa0515340 | Msa0549950 | 0.827146 | 1.837891e-54 | -8.615850e-47 |
Msa0515340 | Msa0566350 | 0.831260 | 1.845838e-55 | -8.615850e-47 |
Msa0515340 | Msa0566750 | 0.821385 | 4.152730e-53 | -8.615850e-47 |
Msa0515340 | Msa0600080 | 0.811680 | 6.201338e-51 | -8.615850e-47 |
Msa0515340 | Msa0600450 | 0.807932 | 3.970508e-50 | -8.615850e-47 |
Msa0515340 | Msa0604290 | 0.838912 | 2.169485e-57 | -8.615850e-47 |
Msa0515340 | Msa0616550 | 0.810269 | 1.253456e-50 | -8.615850e-47 |
Msa0515340 | Msa0622120 | 0.811427 | 7.041122e-51 | -8.615850e-47 |
Msa0515340 | Msa0622790 | 0.823521 | 1.324478e-53 | -8.615850e-47 |
Msa0515340 | Msa0624060 | 0.818917 | 1.526465e-52 | -8.615850e-47 |
Msa0515340 | Msa0629240 | 0.808499 | 3.006128e-50 | -8.615850e-47 |
Msa0515340 | Msa0640940 | 0.801079 | 1.066446e-48 | -8.615850e-47 |
Msa0515340 | Msa0645530 | 0.801428 | 9.047718e-49 | -8.615850e-47 |
Msa0515340 | Msa0646020 | 0.846231 | 2.472528e-59 | -8.615850e-47 |
Msa0515340 | Msa0646420 | 0.834725 | 2.538272e-56 | -8.615850e-47 |
Msa0515340 | Msa0651560 | 0.832520 | 9.021079e-56 | -8.615850e-47 |
Msa0515340 | Msa0654310 | 0.813576 | 2.386294e-51 | -8.615850e-47 |
Msa0515340 | Msa0662220 | 0.837702 | 4.446687e-57 | -8.615850e-47 |
Msa0515340 | Msa0665280 | 0.804608 | 1.990975e-49 | -8.615850e-47 |
Msa0515340 | Msa0676130 | 0.811394 | 7.157358e-51 | -8.615850e-47 |
Msa0515340 | Msa0676180 | 0.808254 | 3.389950e-50 | -8.615850e-47 |
Msa0515340 | Msa0679360 | 0.803513 | 3.362789e-49 | -8.615850e-47 |
Msa0515340 | Msa0685090 | 0.801843 | 7.435189e-49 | -8.615850e-47 |
Msa0515340 | Msa0686030 | 0.808515 | 2.981485e-50 | -8.615850e-47 |
Msa0515340 | Msa0689320 | 0.831044 | 2.086484e-55 | -8.615850e-47 |
Msa0515340 | Msa0756380 | 0.812890 | 3.376101e-51 | -8.615850e-47 |
Msa0515340 | Msa0789560 | 0.811600 | 6.454291e-51 | -8.615850e-47 |
Msa0515340 | Msa0829220 | 0.810653 | 1.035613e-50 | -8.615850e-47 |
Msa0515340 | Msa0844280 | 0.810777 | 9.738811e-51 | -8.615850e-47 |
Msa0515340 | Msa0861500 | 0.815026 | 1.141345e-51 | -8.615850e-47 |
Msa0515340 | Msa0878220 | 0.851129 | 1.085366e-60 | -8.615850e-47 |
Msa0515340 | Msa0882520 | 0.801639 | 8.187774e-49 | -8.615850e-47 |
Msa0515340 | Msa0894710 | 0.804059 | 2.590459e-49 | -8.615850e-47 |
Msa0515340 | Msa0910960 | 0.835397 | 1.718981e-56 | -8.615850e-47 |
Msa0515340 | Msa0943970 | 0.830108 | 3.535152e-55 | -8.615850e-47 |
Msa0515340 | Msa0944020 | 0.845725 | 3.394281e-59 | -8.615850e-47 |
Msa0515340 | Msa0944200 | 0.814297 | 1.655371e-51 | -8.615850e-47 |
Msa0515340 | Msa0962840 | 0.805391 | 1.365470e-49 | -8.615850e-47 |
Msa0515340 | Msa0980540 | 0.825934 | 3.574875e-54 | -8.615850e-47 |
Msa0515340 | Msa0992510 | 0.854568 | 1.128768e-61 | -8.615850e-47 |
Msa0515340 | Msa1036300 | 0.836481 | 9.125166e-57 | -8.615850e-47 |
Msa0515340 | Msa1037520 | 0.837179 | 6.056324e-57 | -8.615850e-47 |
Msa0515340 | Msa1047760 | 0.801736 | 7.821120e-49 | -8.615850e-47 |
Msa0515340 | Msa1075970 | 0.811670 | 6.234677e-51 | -8.615850e-47 |
Msa0515340 | Msa1096070 | 0.801690 | 7.995234e-49 | -8.615850e-47 |
Msa0515340 | Msa1130400 | 0.835097 | 2.046175e-56 | -8.615850e-47 |
Msa0515340 | Msa1133590 | 0.825160 | 5.454835e-54 | -8.615850e-47 |
Msa0515340 | Msa1178580 | 0.838983 | 2.078612e-57 | -8.615850e-47 |
Msa0515340 | Msa1192140 | -0.808880 | 2.491942e-50 | -8.615850e-47 |
Msa0515340 | Msa1196610 | -0.820787 | 5.703524e-53 | -8.615850e-47 |
Msa0515340 | Msa1205590 | 0.801639 | 8.187774e-49 | -8.615850e-47 |
Msa0515340 | Msa1209670 | 0.848082 | 7.688446e-60 | -8.615850e-47 |
Msa0515340 | Msa1213890 | 0.806494 | 8.004594e-50 | -8.615850e-47 |
Msa0515340 | Msa1225600 | 0.801265 | 9.768050e-49 | -8.615850e-47 |
Msa0515340 | Msa1228040 | 0.802826 | 4.666496e-49 | -8.615850e-47 |
Msa0515340 | Msa1233850 | 0.833971 | 3.924974e-56 | -8.615850e-47 |
Msa0515340 | Msa1271130 | 0.832884 | 7.326825e-56 | -8.615850e-47 |
Msa0515340 | Msa1276150 | 0.840320 | 9.336663e-58 | -8.615850e-47 |
Msa0515340 | Msa1304940 | 0.812649 | 3.811357e-51 | -8.615850e-47 |
Msa0515340 | Msa1327640 | 0.812034 | 5.194758e-51 | -8.615850e-47 |
Msa0515340 | Msa1331760 | 0.816345 | 5.801480e-52 | -8.615850e-47 |
Msa0515340 | Msa1357560 | 0.887991 | 8.764568e-73 | -8.615850e-47 |
Msa0515340 | Msa1365800 | 0.800731 | 1.256004e-48 | -8.615850e-47 |
Msa0515340 | Msa1368530 | 0.802037 | 6.784096e-49 | -8.615850e-47 |
Msa0515340 | Msa1370590 | 0.809584 | 1.760428e-50 | -8.615850e-47 |
Msa0515340 | Msa1373850 | 0.841546 | 4.449185e-58 | -8.615850e-47 |
Msa0515340 | Msa1378410 | 0.821948 | 3.077346e-53 | -8.615850e-47 |
Msa0515340 | Msa1384100 | 0.809677 | 1.681096e-50 | -8.615850e-47 |
Msa0515340 | Msa1392980 | 0.806563 | 7.743025e-50 | -8.615850e-47 |
Msa0515340 | Msa1401990 | 0.834398 | 3.067717e-56 | -8.615850e-47 |
Msa0515340 | Msa1414820 | 0.801541 | 8.576497e-49 | -8.615850e-47 |
Msa0515340 | Msa1419690 | 0.842805 | 2.066555e-58 | -8.615850e-47 |
Msa0515340 | Msa1419840 | 0.804716 | 1.889991e-49 | -8.615850e-47 |
Msa0515340 | Msa1433700 | 0.831095 | 2.026448e-55 | -8.615850e-47 |
Msa0515340 | Msa1437730 | 0.801387 | 9.223916e-49 | -8.615850e-47 |
Msa0515340 | Msa1442790 | 0.818702 | 1.707324e-52 | -8.615850e-47 |
Msa0515340 | Msa1444120 | 0.806576 | 7.691073e-50 | -8.615850e-47 |
Msa0515340 | Msa1446080 | 0.841951 | 3.480067e-58 | -8.615850e-47 |
Msa0515340 | Msa1448490 | 0.801691 | 7.990478e-49 | -8.615850e-47 |
Msa0515340 | Msa1452710 | 0.806335 | 8.649384e-50 | -8.615850e-47 |
Msa0515340 | Msa1458290 | 0.827386 | 1.609667e-54 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0515340 | MtrunA17_Chr3g0124601 | 99.449 | 363 | 2 | 0 | 1 | 363 | 1 | 363 | 0.0 | 751 |
Msa0515340 | MtrunA17_Chr8g0382861 | 68.839 | 353 | 102 | 4 | 12 | 363 | 13 | 358 | 1.69e-176 | 494 |
Msa0515340 | MtrunA17_Chr8g0353501 | 56.269 | 327 | 125 | 4 | 43 | 361 | 150 | 466 | 3.41e-117 | 347 |
Msa0515340 | MtrunA17_Chr3g0115371 | 49.429 | 350 | 170 | 3 | 14 | 359 | 1 | 347 | 4.49e-116 | 341 |
Msa0515340 | MtrunA17_Chr7g0256211 | 58.667 | 300 | 111 | 3 | 70 | 361 | 158 | 452 | 9.80e-113 | 335 |
Msa0515340 | MtrunA17_Chr5g0424861 | 49.716 | 352 | 165 | 4 | 14 | 358 | 1 | 347 | 2.04e-111 | 329 |
Msa0515340 | MtrunA17_Chr5g0422771 | 55.556 | 306 | 124 | 3 | 64 | 361 | 163 | 464 | 6.36e-110 | 329 |
Msa0515340 | MtrunA17_Chr2g0321431 | 54.795 | 292 | 120 | 4 | 73 | 361 | 187 | 469 | 6.63e-109 | 327 |
Msa0515340 | MtrunA17_Chr1g0210151 | 55.401 | 287 | 124 | 2 | 79 | 361 | 54 | 340 | 1.27e-105 | 313 |
Msa0515340 | MtrunA17_Chr1g0174701 | 52.117 | 307 | 138 | 3 | 64 | 361 | 200 | 506 | 1.18e-103 | 314 |
Msa0515340 | MtrunA17_Chr4g0026401 | 46.991 | 349 | 155 | 6 | 30 | 361 | 126 | 461 | 1.79e-103 | 313 |
Msa0515340 | MtrunA17_Chr7g0258321 | 50.321 | 312 | 148 | 2 | 57 | 361 | 152 | 463 | 6.77e-103 | 311 |
Msa0515340 | MtrunA17_Chr5g0424851 | 53.704 | 216 | 99 | 1 | 144 | 358 | 7 | 222 | 2.16e-75 | 239 |
Msa0515340 | MtrunA17_Chr5g0424851 | 53.960 | 202 | 93 | 0 | 148 | 349 | 225 | 426 | 6.67e-72 | 230 |
Msa0515340 | MtrunA17_Chr3g0093451 | 57.669 | 163 | 58 | 3 | 82 | 235 | 49 | 209 | 1.32e-59 | 191 |
Msa0515340 | MtrunA17_Chr1g0196951 | 38.806 | 201 | 98 | 5 | 160 | 354 | 59 | 240 | 7.16e-34 | 125 |
Msa0515340 | MtrunA17_Chr8g0384821 | 25.957 | 235 | 139 | 5 | 150 | 349 | 14 | 248 | 7.80e-16 | 76.6 |
Msa0515340 | MtrunA17_Chr7g0242651 | 24.651 | 215 | 152 | 5 | 147 | 351 | 5 | 219 | 1.24e-14 | 72.8 |
Msa0515340 | MtrunA17_Chr2g0315631 | 23.182 | 220 | 135 | 3 | 151 | 350 | 4 | 209 | 2.09e-12 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0515340 | AT5G65210.5 | 67.663 | 368 | 114 | 2 | 1 | 363 | 1 | 368 | 0.0 | 515 |
Msa0515340 | AT5G65210.7 | 67.663 | 368 | 114 | 2 | 1 | 363 | 1 | 368 | 0.0 | 515 |
Msa0515340 | AT5G65210.3 | 67.663 | 368 | 114 | 2 | 1 | 363 | 1 | 368 | 0.0 | 515 |
Msa0515340 | AT5G65210.1 | 67.663 | 368 | 114 | 2 | 1 | 363 | 1 | 368 | 0.0 | 515 |
Msa0515340 | AT5G65210.2 | 67.663 | 368 | 114 | 2 | 1 | 363 | 1 | 368 | 0.0 | 515 |
Msa0515340 | AT5G65210.4 | 67.663 | 368 | 114 | 2 | 1 | 363 | 1 | 368 | 0.0 | 515 |
Msa0515340 | AT5G10030.5 | 68.767 | 365 | 111 | 2 | 1 | 363 | 1 | 364 | 0.0 | 512 |
Msa0515340 | AT5G10030.3 | 68.767 | 365 | 111 | 2 | 1 | 363 | 1 | 364 | 0.0 | 512 |
Msa0515340 | AT5G10030.1 | 68.767 | 365 | 111 | 2 | 1 | 363 | 1 | 364 | 0.0 | 512 |
Msa0515340 | AT5G10030.4 | 68.767 | 365 | 111 | 2 | 1 | 363 | 1 | 364 | 0.0 | 512 |
Msa0515340 | AT5G10030.2 | 68.767 | 365 | 111 | 2 | 1 | 363 | 1 | 364 | 0.0 | 512 |
Msa0515340 | AT5G65210.6 | 73.064 | 297 | 78 | 1 | 69 | 363 | 2 | 298 | 1.67e-160 | 452 |
Msa0515340 | AT1G77920.1 | 56.764 | 377 | 136 | 7 | 2 | 363 | 4 | 368 | 8.89e-143 | 409 |
Msa0515340 | AT1G22070.1 | 56.557 | 366 | 143 | 4 | 12 | 361 | 17 | 382 | 1.93e-135 | 391 |
Msa0515340 | AT5G06950.2 | 59.516 | 289 | 107 | 2 | 79 | 361 | 46 | 330 | 2.16e-113 | 333 |
Msa0515340 | AT5G06950.4 | 59.516 | 289 | 107 | 2 | 79 | 361 | 46 | 330 | 2.16e-113 | 333 |
Msa0515340 | AT5G06950.1 | 59.516 | 289 | 107 | 2 | 79 | 361 | 46 | 330 | 2.16e-113 | 333 |
Msa0515340 | AT5G06950.5 | 59.516 | 289 | 107 | 2 | 79 | 361 | 46 | 330 | 2.16e-113 | 333 |
Msa0515340 | AT5G06950.3 | 59.516 | 289 | 107 | 2 | 79 | 361 | 46 | 330 | 2.16e-113 | 333 |
Msa0515340 | AT3G12250.6 | 54.268 | 328 | 131 | 4 | 49 | 361 | 7 | 330 | 2.13e-112 | 331 |
Msa0515340 | AT3G12250.2 | 54.268 | 328 | 131 | 4 | 49 | 361 | 7 | 330 | 2.13e-112 | 331 |
Msa0515340 | AT3G12250.7 | 54.268 | 328 | 131 | 4 | 49 | 361 | 7 | 330 | 2.13e-112 | 331 |
Msa0515340 | AT3G12250.1 | 54.268 | 328 | 131 | 4 | 49 | 361 | 7 | 330 | 2.13e-112 | 331 |
Msa0515340 | AT3G12250.3 | 55.305 | 311 | 129 | 2 | 57 | 361 | 18 | 324 | 1.93e-111 | 328 |
Msa0515340 | AT3G12250.5 | 57.191 | 299 | 114 | 3 | 73 | 361 | 9 | 303 | 3.57e-111 | 327 |
Msa0515340 | AT5G06960.3 | 58.824 | 289 | 109 | 2 | 79 | 361 | 26 | 310 | 8.14e-111 | 326 |
Msa0515340 | AT5G06960.2 | 58.824 | 289 | 109 | 2 | 79 | 361 | 46 | 330 | 9.62e-111 | 327 |
Msa0515340 | AT5G06960.1 | 58.824 | 289 | 109 | 2 | 79 | 361 | 46 | 330 | 9.62e-111 | 327 |
Msa0515340 | AT3G12250.4 | 55.305 | 311 | 129 | 2 | 57 | 361 | 49 | 355 | 1.38e-110 | 327 |
Msa0515340 | AT1G08320.2 | 56.098 | 287 | 111 | 3 | 79 | 361 | 54 | 329 | 9.75e-110 | 325 |
Msa0515340 | AT1G08320.5 | 56.098 | 287 | 111 | 3 | 79 | 361 | 54 | 329 | 9.75e-110 | 325 |
Msa0515340 | AT1G08320.1 | 56.098 | 287 | 111 | 3 | 79 | 361 | 178 | 453 | 3.36e-108 | 325 |
Msa0515340 | AT1G08320.4 | 56.098 | 287 | 111 | 3 | 79 | 361 | 178 | 453 | 3.36e-108 | 325 |
Msa0515340 | AT1G08320.3 | 56.098 | 287 | 111 | 3 | 79 | 361 | 178 | 453 | 3.36e-108 | 325 |
Msa0515340 | AT5G06839.1 | 49.538 | 325 | 147 | 4 | 52 | 361 | 93 | 415 | 4.68e-102 | 307 |
Msa0515340 | AT5G06839.2 | 49.387 | 326 | 147 | 4 | 52 | 361 | 93 | 416 | 7.20e-102 | 307 |
Msa0515340 | AT5G06839.3 | 52.685 | 298 | 126 | 3 | 79 | 361 | 161 | 458 | 1.13e-101 | 308 |
Msa0515340 | AT1G68640.1 | 52.922 | 308 | 136 | 3 | 61 | 361 | 147 | 452 | 3.67e-99 | 301 |
Msa0515340 | AT1G58330.1 | 26.126 | 222 | 151 | 4 | 143 | 351 | 2 | 223 | 1.04e-18 | 84.3 |
Msa0515340 | AT3G14880.2 | 26.126 | 222 | 129 | 7 | 147 | 343 | 6 | 217 | 1.04e-12 | 67.4 |
Msa0515340 | AT3G14880.1 | 25.328 | 229 | 129 | 7 | 147 | 343 | 6 | 224 | 7.70e-12 | 65.1 |
Find 111 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTTGTAAATAAATTAATTT+TGG | 0.164639 | 3_4:+66573124 | Msa0515340:three_prime_UTR |
AAGAGTGTTTGTAATGTTAT+TGG | 0.192356 | 3_4:-66569760 | None:intergenic |
AGCTCGATGTTTGCTTGCTT+TGG | 0.213054 | 3_4:+66572849 | Msa0515340:CDS |
TTGATTTAATTGCAGATTCT+TGG | 0.226068 | 3_4:+66572247 | Msa0515340:intron |
AAAACTGCAGGGAATGTATA+TGG | 0.249625 | 3_4:+66571600 | Msa0515340:intron |
CCTAAACCACACATTGTATA+TGG | 0.292874 | 3_4:-66573028 | None:intergenic |
CAAGTCCGCCTCATCAATTA+AGG | 0.315142 | 3_4:-66570942 | None:intergenic |
TTCTCATTTCCGAGATTTGC+CGG | 0.317139 | 3_4:-66571826 | None:intergenic |
TTAATTGCAGTTTGCTATAG+AGG | 0.320466 | 3_4:+66570752 | Msa0515340:intron |
GCAGCCTTTGAGATGGAGTA+TGG | 0.346430 | 3_4:+66571782 | Msa0515340:CDS |
GCTCGATGTTTGCTTGCTTT+GGG | 0.348084 | 3_4:+66572850 | Msa0515340:CDS |
CATGTTCTAACCTTATCAAT+AGG | 0.384759 | 3_4:-66571140 | None:intergenic |
TCTGTCAATGGTTCAATCAT+TGG | 0.390810 | 3_4:-66572271 | None:intergenic |
CCATATACAATGTGTGGTTT+AGG | 0.401655 | 3_4:+66573028 | Msa0515340:three_prime_UTR |
AATATTATAGAAAGTTGAAA+TGG | 0.410564 | 3_4:-66569789 | None:intergenic |
CATACTTGTTAGATGTTCCT+AGG | 0.414801 | 3_4:-66571100 | None:intergenic |
GGCTCTTACGAGCAGCTTCT+CGG | 0.427961 | 3_4:-66571286 | None:intergenic |
CTTCTCCCCACATATTAATC+TGG | 0.429966 | 3_4:-66570883 | None:intergenic |
CACATATTAATCTGGTGAAT+AGG | 0.436108 | 3_4:-66570875 | None:intergenic |
TTTAACAGGCTGACCATCTT+CGG | 0.437689 | 3_4:+66572779 | Msa0515340:intron |
AACAAGACTAAGCAGGTTCT+CGG | 0.440007 | 3_4:-66572924 | None:intergenic |
ATTGGGTTGATGAGCAAAAC+CGG | 0.440031 | 3_4:+66571807 | Msa0515340:CDS |
AATGTATATGGGTGGTGGGT+TGG | 0.443309 | 3_4:+66571612 | Msa0515340:CDS |
ACAAGACTAAGCAGGTTCTC+GGG | 0.443620 | 3_4:-66572923 | None:intergenic |
TTGTAATGTTATTGGAGAAT+GGG | 0.444379 | 3_4:-66569752 | None:intergenic |
CTTGAAGTTTGATAGTAGTC+AGG | 0.454381 | 3_4:+66570961 | Msa0515340:CDS |
TTCGATAGATTTCAGCATAG+TGG | 0.456188 | 3_4:-66571910 | None:intergenic |
AATCGTTGTTGCTCTGTCAA+TGG | 0.456266 | 3_4:-66572283 | None:intergenic |
TCTTGTGAGCTTTGTGAACC+AGG | 0.458406 | 3_4:+66572468 | Msa0515340:CDS |
AGCTCAAAGCCCTCAGGCGT+TGG | 0.459290 | 3_4:-66572882 | None:intergenic |
GAGCTCAGGATGCTGGTTGA+TGG | 0.463581 | 3_4:+66571878 | Msa0515340:CDS |
TGAGATGGAGTATGGACATT+GGG | 0.465713 | 3_4:+66571790 | Msa0515340:CDS |
CACAGTTTGTTTCCTCGAGA+AGG | 0.467650 | 3_4:+66570837 | Msa0515340:CDS |
TTTGTAATGTTATTGGAGAA+TGG | 0.474133 | 3_4:-66569753 | None:intergenic |
TATAGAAAGTTGAAATGGAT+GGG | 0.474395 | 3_4:-66569784 | None:intergenic |
TGAGGGCTTTGAGCTCACTA+TGG | 0.474812 | 3_4:+66572890 | Msa0515340:CDS |
TCGTTTGAAGTTAGTGCAGT+TGG | 0.476876 | 3_4:+66571442 | Msa0515340:CDS |
TTTGCTGGACCTGTGAATCC+AGG | 0.482156 | 3_4:+66571652 | Msa0515340:CDS |
CGCCTCATCAATTAAGGGAA+TGG | 0.487369 | 3_4:-66570936 | None:intergenic |
GTTTCTCCATGCCTTGTGAA+AGG | 0.488025 | 3_4:-66572351 | None:intergenic |
GATGCTTCTCATGGTATCCT+AGG | 0.490549 | 3_4:+66571083 | Msa0515340:CDS |
GCAAGGTTTCCTGCCGAAGA+TGG | 0.491320 | 3_4:-66572792 | None:intergenic |
TTTCTCCATGCCTTGTGAAA+GGG | 0.491745 | 3_4:-66572350 | None:intergenic |
AAGATAGCTGTAGCTTCTAA+AGG | 0.493814 | 3_4:+66570032 | Msa0515340:five_prime_UTR |
AGCTAATAGACCTATTGATA+AGG | 0.501170 | 3_4:+66571130 | Msa0515340:CDS |
CTCGCTGATAGCGTAGCAGC+TGG | 0.502070 | 3_4:+66572385 | Msa0515340:CDS |
CAGGGAATGTATATGGGTGG+TGG | 0.504131 | 3_4:+66571607 | Msa0515340:intron |
AAGTCCGCCTCATCAATTAA+GGG | 0.508625 | 3_4:-66570941 | None:intergenic |
ATTGACAGAGCAACAACGAT+TGG | 0.518816 | 3_4:+66572285 | Msa0515340:CDS |
TATGAGTCTCTCTTTGAAGA+TGG | 0.519256 | 3_4:+66569932 | Msa0515340:five_prime_UTR |
ACAAACCAACCTGGATTCAC+AGG | 0.524884 | 3_4:-66571661 | None:intergenic |
TCGCCCTTCTGAGCTTCTCA+AGG | 0.526161 | 3_4:+66572027 | Msa0515340:CDS |
TGACATAGAGCTCAGGATGC+TGG | 0.526532 | 3_4:+66571871 | Msa0515340:CDS |
ACAGGCTGACCATCTTCGGC+AGG | 0.532331 | 3_4:+66572783 | Msa0515340:intron |
TTATAGAAAGTTGAAATGGA+TGG | 0.532934 | 3_4:-66569785 | None:intergenic |
CAGATTAATATGTGGGGAGA+AGG | 0.534968 | 3_4:+66570884 | Msa0515340:CDS |
ATCACCTTGAGAAGCTCAGA+AGG | 0.537726 | 3_4:-66572031 | None:intergenic |
TCCACAGATGGCTACTGCAA+TGG | 0.537758 | 3_4:+66572432 | Msa0515340:CDS |
AGAATATTTCCAACGCCTGA+GGG | 0.537877 | 3_4:+66572873 | Msa0515340:CDS |
AGGAATTGCAGCCTTTGAGA+TGG | 0.538267 | 3_4:+66571775 | Msa0515340:intron |
AAACTGCAGGGAATGTATAT+GGG | 0.538541 | 3_4:+66571601 | Msa0515340:intron |
TGAGCAAAACCGGCAAATCT+CGG | 0.539595 | 3_4:+66571817 | Msa0515340:CDS |
AGATGCCCTTTCACAAGGCA+TGG | 0.540096 | 3_4:+66572345 | Msa0515340:CDS |
GTTGGTAACAAGATTTGAGC+GGG | 0.544320 | 3_4:+66570002 | Msa0515340:five_prime_UTR |
GCTCGAACGTGTTAGACAGC+AGG | 0.550918 | 3_4:+66571472 | Msa0515340:CDS |
TATTCACCAGATTAATATGT+GGG | 0.557449 | 3_4:+66570877 | Msa0515340:CDS |
TGTTCGCGACATTTGTTGCA+AGG | 0.557667 | 3_4:-66572809 | None:intergenic |
TTGAGATGGAGTATGGACAT+TGG | 0.559206 | 3_4:+66571789 | Msa0515340:CDS |
CTATTCACCAGATTAATATG+TGG | 0.559375 | 3_4:+66570876 | Msa0515340:CDS |
ATAGTGAGCTCAAAGCCCTC+AGG | 0.562814 | 3_4:-66572888 | None:intergenic |
GCAGCTGGACAATTCATTGA+AGG | 0.563520 | 3_4:+66572400 | Msa0515340:CDS |
AGGGAATGTATATGGGTGGT+GGG | 0.568452 | 3_4:+66571608 | Msa0515340:intron |
GAGAATATTTCCAACGCCTG+AGG | 0.568747 | 3_4:+66572872 | Msa0515340:CDS |
GGAGAAGGCTTCAAAAGTAA+TGG | 0.571903 | 3_4:+66570899 | Msa0515340:CDS |
GACGGCGAATTCATGCTCAA+TGG | 0.573598 | 3_4:-66570812 | None:intergenic |
TAAATGAAACGTGATGAGTA+TGG | 0.573929 | 3_4:+66572977 | Msa0515340:three_prime_UTR |
TCTCCACAACAAAAGACTGC+AGG | 0.574821 | 3_4:-66573065 | None:intergenic |
CTTGTTGACATGATTGTCCA+AGG | 0.580404 | 3_4:-66572318 | None:intergenic |
TCCATTGCAGTAGCCATCTG+TGG | 0.581181 | 3_4:-66572433 | None:intergenic |
ATCCATTCCCTTAATTGATG+AGG | 0.582525 | 3_4:+66570934 | Msa0515340:CDS |
TGTAATGTTATTGGAGAATG+GGG | 0.582747 | 3_4:-66569751 | None:intergenic |
TAGTCAGAGGATGCTTCTCA+TGG | 0.584672 | 3_4:+66571074 | Msa0515340:intron |
CGATTGGATATCGATAACCT+TGG | 0.584683 | 3_4:+66572301 | Msa0515340:CDS |
AGGAACTTATATTCCACAGA+TGG | 0.586141 | 3_4:+66572420 | Msa0515340:CDS |
ATTGAAGACTGATTTAATTG+CGG | 0.586307 | 3_4:+66570778 | Msa0515340:five_prime_UTR |
CATTCCCTTAATTGATGAGG+CGG | 0.591538 | 3_4:+66570937 | Msa0515340:CDS |
GTATTAGTGACATAGAGCTC+AGG | 0.591773 | 3_4:+66571864 | Msa0515340:CDS |
TATTGGAGAATGGGGAGTGG+TGG | 0.592334 | 3_4:-66569743 | None:intergenic |
ATAGAAAGTTGAAATGGATG+GGG | 0.597213 | 3_4:-66569783 | None:intergenic |
CTCAAATCTTGTTACCAACA+TGG | 0.598716 | 3_4:-66569998 | None:intergenic |
AAATTAGTCTGTGTGAAAGT+TGG | 0.601947 | 3_4:+66573194 | Msa0515340:three_prime_UTR |
ATTGGTCATCATCACCATGT+TGG | 0.602722 | 3_4:+66569984 | Msa0515340:five_prime_UTR |
TGTTATTGGAGAATGGGGAG+TGG | 0.606277 | 3_4:-66569746 | None:intergenic |
GCAGAAGATGCCCTTTCACA+AGG | 0.607214 | 3_4:+66572340 | Msa0515340:CDS |
TCAAAACCATATACAATGTG+TGG | 0.611088 | 3_4:+66573022 | Msa0515340:three_prime_UTR |
GTCTTGCAACAAGACTAAGC+AGG | 0.618652 | 3_4:-66572931 | None:intergenic |
CAAGACTAAGCAGGTTCTCG+GGG | 0.624393 | 3_4:-66572922 | None:intergenic |
GCAAACATCGAGCTGACTGA+CGG | 0.633030 | 3_4:-66572840 | None:intergenic |
GATTAAATATGCAGATACAA+AGG | 0.638966 | 3_4:+66571249 | Msa0515340:intron |
GAGGAAACAAACTGTGCGGA+CGG | 0.640938 | 3_4:-66570830 | None:intergenic |
ATGTCCATACTCCATCTCAA+AGG | 0.641308 | 3_4:-66571786 | None:intergenic |
TTTATGTGATGTCCGGCATG+TGG | 0.642596 | 3_4:+66571963 | Msa0515340:CDS |
ATACACACTCATCCTTCTCG+AGG | 0.650671 | 3_4:-66570849 | None:intergenic |
TGTTGGTAACAAGATTTGAG+CGG | 0.659293 | 3_4:+66570001 | Msa0515340:five_prime_UTR |
CACAAGGCATGGAGAAACTG+CGG | 0.659798 | 3_4:+66572356 | Msa0515340:CDS |
TCACCTTGAGAAGCTCAGAA+GGG | 0.664994 | 3_4:-66572030 | None:intergenic |
CTGCAGGGAATGTATATGGG+TGG | 0.681880 | 3_4:+66571604 | Msa0515340:intron |
ATTCACCAGATTAATATGTG+GGG | 0.681960 | 3_4:+66570878 | Msa0515340:CDS |
GTCCGGCATGTGGAAAACAA+CGG | 0.755517 | 3_4:+66571973 | Msa0515340:CDS |
TCTCGAGGAAACAAACTGTG+CGG | 0.757278 | 3_4:-66570834 | None:intergenic |
AGACTGATTTAATTGCGGCG+CGG | 0.780685 | 3_4:+66570783 | Msa0515340:five_prime_UTR |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GTACAATATAAATATAAAAA+TGG | - | chr3_4:66569881-66569900 | None:intergenic | 10.0% |
!!! | ATTAATTTTAGTACAAATAT+AGG | - | chr3_4:66570339-66570358 | None:intergenic | 10.0% |
!! | TTTATTAAATTGAAAAGTAA+TGG | - | chr3_4:66572518-66572537 | None:intergenic | 10.0% |
!!! | GTTTGTAAATAAATTAATTT+TGG | + | chr3_4:66573124-66573143 | Msa0515340:three_prime_UTR | 10.0% |
!! | AATATTATAGAAAGTTGAAA+TGG | - | chr3_4:66569792-66569811 | None:intergenic | 15.0% |
!! | AATATAAAAATGGAAATGAA+AGG | - | chr3_4:66569871-66569890 | None:intergenic | 15.0% |
!! | ATTAATATAATTCTAATTCG+AGG | + | chr3_4:66570118-66570137 | Msa0515340:intron | 15.0% |
!!! | AAGAAAAAAAAGTACAAAAT+AGG | - | chr3_4:66570443-66570462 | None:intergenic | 15.0% |
!! | TTTAATTCCATATTCAATTA+TGG | + | chr3_4:66572184-66572203 | Msa0515340:intron | 15.0% |
!! | GAAAAATTTATAATGTAGTA+TGG | + | chr3_4:66572210-66572229 | Msa0515340:intron | 15.0% |
!!! | GTATATGTTTATTTTATAAC+CGG | + | chr3_4:66572670-66572689 | Msa0515340:intron | 15.0% |
!!! | TATATGTTTATTTTATAACC+GGG | + | chr3_4:66572671-66572690 | Msa0515340:intron | 15.0% |
!!! | ATAAGATAGATATATGGTTT+TGG | - | chr3_4:66570190-66570209 | None:intergenic | 20.0% |
!! | CATATCATAAGATAGATATA+TGG | - | chr3_4:66570196-66570215 | None:intergenic | 20.0% |
!!! | TAACTGGTCTATAAAAAATT+TGG | + | chr3_4:66570304-66570323 | Msa0515340:intron | 20.0% |
!!! | TACAATTTTATCATCAAATC+AGG | - | chr3_4:66570376-66570395 | None:intergenic | 20.0% |
!!! | TTTTGTACTTTTTTTTCTTC+TGG | + | chr3_4:66570444-66570463 | Msa0515340:intron | 20.0% |
!! | TTTATTGCCTATTAAAATCA+AGG | + | chr3_4:66570496-66570515 | Msa0515340:intron | 20.0% |
!!! | TGAAATTCCTTGATTTTAAT+AGG | - | chr3_4:66570506-66570525 | None:intergenic | 20.0% |
!! | TACTAAAAAAGTTGAATAAG+TGG | + | chr3_4:66570543-66570562 | Msa0515340:intron | 20.0% |
!! | TATAAAACATGAATCCAATT+TGG | - | chr3_4:66571049-66571068 | None:intergenic | 20.0% |
!! | AAATTTATAATGTAGTATGG+TGG | + | chr3_4:66572213-66572232 | Msa0515340:intron | 20.0% |
!! | AGTTAAATATGTGATTCTAA+TGG | - | chr3_4:66572749-66572768 | None:intergenic | 20.0% |
! | TTGTAATGTTATTGGAGAAT+GGG | - | chr3_4:66569755-66569774 | None:intergenic | 25.0% |
! | TTTGTAATGTTATTGGAGAA+TGG | - | chr3_4:66569756-66569775 | None:intergenic | 25.0% |
!!! | AAGAGTGTTTGTAATGTTAT+TGG | - | chr3_4:66569763-66569782 | None:intergenic | 25.0% |
! | TATAGAAAGTTGAAATGGAT+GGG | - | chr3_4:66569787-66569806 | None:intergenic | 25.0% |
! | TTATAGAAAGTTGAAATGGA+TGG | - | chr3_4:66569788-66569807 | None:intergenic | 25.0% |
!!! | CAAAAAAAAGGTTGTTGTTT+TGG | - | chr3_4:66570266-66570285 | None:intergenic | 25.0% |
! | TAGAGTATAATCTGTTTCAT+AGG | + | chr3_4:66570399-66570418 | Msa0515340:intron | 25.0% |
!! | ATTGAAGACTGATTTAATTG+CGG | + | chr3_4:66570778-66570797 | Msa0515340:five_prime_UTR | 25.0% |
! | TATTCACCAGATTAATATGT+GGG | + | chr3_4:66570877-66570896 | Msa0515340:CDS | 25.0% |
! | ATTCTGCTTATTAACCAAAT+TGG | + | chr3_4:66571032-66571051 | Msa0515340:intron | 25.0% |
! | GAACATGAAGAATTTGTATT+CGG | + | chr3_4:66571156-66571175 | Msa0515340:intron | 25.0% |
! | GATTAAATATGCAGATACAA+AGG | + | chr3_4:66571249-66571268 | Msa0515340:intron | 25.0% |
!! | TCTAATAATATGTGTTTTGC+TGG | + | chr3_4:66571637-66571656 | Msa0515340:CDS | 25.0% |
! | TTTCATGCCATAATTGAATA+TGG | - | chr3_4:66572194-66572213 | None:intergenic | 25.0% |
! | TTGATTTAATTGCAGATTCT+TGG | + | chr3_4:66572247-66572266 | Msa0515340:intron | 25.0% |
! | GATAATAAGTTAGTGACAAA+TGG | - | chr3_4:66572592-66572611 | None:intergenic | 25.0% |
! | AAACATACATGATTTGATCA+CGG | - | chr3_4:66572634-66572653 | None:intergenic | 25.0% |
!!! | CAAGCTATTTTTTTCAAAAG+GGG | - | chr3_4:66572725-66572744 | None:intergenic | 25.0% |
!!! | CCAAGCTATTTTTTTCAAAA+GGG | - | chr3_4:66572726-66572745 | None:intergenic | 25.0% |
!! | ATTTTGGATGCATGTATATT+TGG | + | chr3_4:66573140-66573159 | Msa0515340:three_prime_UTR | 25.0% |
!! | GAAATGTGTATTTTTGTGCT+TGG | - | chr3_4:66569721-66569740 | None:intergenic | 30.0% |
TGTAATGTTATTGGAGAATG+GGG | - | chr3_4:66569754-66569773 | None:intergenic | 30.0% | |
ATAGAAAGTTGAAATGGATG+GGG | - | chr3_4:66569786-66569805 | None:intergenic | 30.0% | |
ATTCTAATTCGAGGAAAACA+AGG | + | chr3_4:66570127-66570146 | Msa0515340:intron | 30.0% | |
AGGAAAACAAGGAAACATAA+CGG | + | chr3_4:66570138-66570157 | Msa0515340:intron | 30.0% | |
CAATCAAAGACAAAAGACAA+AGG | - | chr3_4:66570243-66570262 | None:intergenic | 30.0% | |
!!! | ACCTTTTTTTTGTCAGAGAA+AGG | + | chr3_4:66570274-66570293 | Msa0515340:intron | 30.0% |
TCCTTTCTCTGACAAAAAAA+AGG | - | chr3_4:66570278-66570297 | None:intergenic | 30.0% | |
AGAGAAAGGAAAGAAATAAC+TGG | + | chr3_4:66570288-66570307 | Msa0515340:intron | 30.0% | |
! | ACTATGAGTCACTATGATTT+TGG | + | chr3_4:66570611-66570630 | Msa0515340:intron | 30.0% |
AAGTTTCTGCAAAATCACAA+TGG | - | chr3_4:66570676-66570695 | None:intergenic | 30.0% | |
AAAGTTCCTGCAGTATAAAA+GGG | - | chr3_4:66570711-66570730 | None:intergenic | 30.0% | |
TAAAGTTCCTGCAGTATAAA+AGG | - | chr3_4:66570712-66570731 | None:intergenic | 30.0% | |
TCTATAGCAAACTGCAATTA+AGG | - | chr3_4:66570753-66570772 | None:intergenic | 30.0% | |
!! | TTAATTGCAGTTTGCTATAG+AGG | + | chr3_4:66570752-66570771 | Msa0515340:intron | 30.0% |
CACATATTAATCTGGTGAAT+AGG | - | chr3_4:66570878-66570897 | None:intergenic | 30.0% | |
CTATTCACCAGATTAATATG+TGG | + | chr3_4:66570876-66570895 | Msa0515340:CDS | 30.0% | |
ATTCACCAGATTAATATGTG+GGG | + | chr3_4:66570878-66570897 | Msa0515340:CDS | 30.0% | |
!! | CAAAGGTTGATTTGTTTCAT+TGG | + | chr3_4:66570994-66571013 | Msa0515340:intron | 30.0% |
! | GTTTTATAATGCTTAGTCAG+AGG | + | chr3_4:66571061-66571080 | Msa0515340:intron | 30.0% |
AGCTAATAGACCTATTGATA+AGG | + | chr3_4:66571130-66571149 | Msa0515340:CDS | 30.0% | |
CATGTTCTAACCTTATCAAT+AGG | - | chr3_4:66571143-66571162 | None:intergenic | 30.0% | |
! | GATACCATGCTTTCAAATTT+TGG | + | chr3_4:66571199-66571218 | Msa0515340:intron | 30.0% |
ACATCCAAAATTTGAAAGCA+TGG | - | chr3_4:66571206-66571225 | None:intergenic | 30.0% | |
!!! | TTAAAACCTTTTTTCGCAGA+CGG | - | chr3_4:66571310-66571329 | None:intergenic | 30.0% |
TTTCTATCACTTTATGTCAC+CGG | + | chr3_4:66571535-66571554 | Msa0515340:intron | 30.0% | |
!!! | GATGTTTTTTATGTGATGTC+CGG | + | chr3_4:66571956-66571975 | Msa0515340:CDS | 30.0% |
! | GAAAGATTTTTCTTGTGGAT+CGG | + | chr3_4:66571998-66572017 | Msa0515340:CDS | 30.0% |
GTTATCCATAGAATGATAGA+AGG | + | chr3_4:66572085-66572104 | Msa0515340:intron | 30.0% | |
TGTCTTAATGTGAGAAAGAA+TGG | + | chr3_4:66572128-66572147 | Msa0515340:intron | 30.0% | |
GTCTTAATGTGAGAAAGAAT+GGG | + | chr3_4:66572129-66572148 | Msa0515340:intron | 30.0% | |
TAATGGTTATCAAGAAAGCT+AGG | - | chr3_4:66572501-66572520 | None:intergenic | 30.0% | |
!! | CCCTTTTGAAAAAAATAGCT+TGG | + | chr3_4:66572723-66572742 | Msa0515340:intron | 30.0% |
!!! | GCCAAGCTATTTTTTTCAAA+AGG | - | chr3_4:66572727-66572746 | None:intergenic | 30.0% |
TAAATGAAACGTGATGAGTA+TGG | + | chr3_4:66572977-66572996 | Msa0515340:three_prime_UTR | 30.0% | |
!! | ATGAGTATGGTCATTTTCAT+TGG | + | chr3_4:66572990-66573009 | Msa0515340:three_prime_UTR | 30.0% |
TCAAAACCATATACAATGTG+TGG | + | chr3_4:66573022-66573041 | Msa0515340:three_prime_UTR | 30.0% | |
! | AAATTAGTCTGTGTGAAAGT+TGG | + | chr3_4:66573194-66573213 | Msa0515340:three_prime_UTR | 30.0% |
! | TATGAGTCTCTCTTTGAAGA+TGG | + | chr3_4:66569932-66569951 | Msa0515340:five_prime_UTR | 35.0% |
!!! | TCATTAGTTCTGCAGTTTTG+TGG | + | chr3_4:66569960-66569979 | Msa0515340:five_prime_UTR | 35.0% |
CTCAAATCTTGTTACCAACA+TGG | - | chr3_4:66570001-66570020 | None:intergenic | 35.0% | |
!! | TGTTGGTAACAAGATTTGAG+CGG | + | chr3_4:66570001-66570020 | Msa0515340:five_prime_UTR | 35.0% |
AAGATAGCTGTAGCTTCTAA+AGG | + | chr3_4:66570032-66570051 | Msa0515340:five_prime_UTR | 35.0% | |
ATCCAAACATGCACTAAGAA+GGG | - | chr3_4:66570569-66570588 | None:intergenic | 35.0% | |
TATCCAAACATGCACTAAGA+AGG | - | chr3_4:66570570-66570589 | None:intergenic | 35.0% | |
TTGCAGCTTCAACAAAATCA+CGG | + | chr3_4:66570647-66570666 | Msa0515340:intron | 35.0% | |
! | ATGTTACCCTTTTATACTGC+AGG | + | chr3_4:66570702-66570721 | Msa0515340:intron | 35.0% |
ATCCATTCCCTTAATTGATG+AGG | + | chr3_4:66570934-66570953 | Msa0515340:CDS | 35.0% | |
! | CTTGAAGTTTGATAGTAGTC+AGG | + | chr3_4:66570961-66570980 | Msa0515340:CDS | 35.0% |
AGTCAGGTAAATGTTTGCAA+AGG | + | chr3_4:66570977-66570996 | Msa0515340:intron | 35.0% | |
! | CATACTTGTTAGATGTTCCT+AGG | - | chr3_4:66571103-66571122 | None:intergenic | 35.0% |
TTCCTTTCTCTAATACCTTG+AGG | + | chr3_4:66571572-66571591 | Msa0515340:intron | 35.0% | |
AAAACTGCAGGGAATGTATA+TGG | + | chr3_4:66571600-66571619 | Msa0515340:intron | 35.0% | |
AAACTGCAGGGAATGTATAT+GGG | + | chr3_4:66571601-66571620 | Msa0515340:intron | 35.0% | |
AGTTCTTGCATTGCATTCTA+AGG | + | chr3_4:66571738-66571757 | Msa0515340:intron | 35.0% | |
TTCGATAGATTTCAGCATAG+TGG | - | chr3_4:66571913-66571932 | None:intergenic | 35.0% | |
TTAATGTGAGAAAGAATGGG+AGG | + | chr3_4:66572132-66572151 | Msa0515340:intron | 35.0% | |
TCTGTCAATGGTTCAATCAT+TGG | - | chr3_4:66572274-66572293 | None:intergenic | 35.0% | |
AGGAACTTATATTCCACAGA+TGG | + | chr3_4:66572420-66572439 | Msa0515340:CDS | 35.0% | |
TAGTATGACATGTTGCGAAA+AGG | - | chr3_4:66572550-66572569 | None:intergenic | 35.0% | |
ATGTGTTGTAACAACAATCC+CGG | - | chr3_4:66572692-66572711 | None:intergenic | 35.0% | |
AACTGTGATTCGTGTTTAAC+AGG | + | chr3_4:66572765-66572784 | Msa0515340:intron | 35.0% | |
!!! | GTATATGGTTTTGACACTTG+TGG | - | chr3_4:66573016-66573035 | None:intergenic | 35.0% |
CCTAAACCACACATTGTATA+TGG | - | chr3_4:66573031-66573050 | None:intergenic | 35.0% | |
CCATATACAATGTGTGGTTT+AGG | + | chr3_4:66573028-66573047 | Msa0515340:three_prime_UTR | 35.0% | |
! | GACTGCTCATTTTATGCAAT+AGG | + | chr3_4:66573100-66573119 | Msa0515340:three_prime_UTR | 35.0% |
!! | GTTCTGCAGTTTTGTGGTAT+TGG | + | chr3_4:66569966-66569985 | Msa0515340:five_prime_UTR | 40.0% |
ATTGGTCATCATCACCATGT+TGG | + | chr3_4:66569984-66570003 | Msa0515340:five_prime_UTR | 40.0% | |
!! | GTTGGTAACAAGATTTGAGC+GGG | + | chr3_4:66570002-66570021 | Msa0515340:five_prime_UTR | 40.0% |
GTTTGGATAGACTGTGAGAT+TGG | + | chr3_4:66570581-66570600 | Msa0515340:intron | 40.0% | |
CTTCTCCCCACATATTAATC+TGG | - | chr3_4:66570886-66570905 | None:intergenic | 40.0% | |
CAGATTAATATGTGGGGAGA+AGG | + | chr3_4:66570884-66570903 | Msa0515340:CDS | 40.0% | |
GGAGAAGGCTTCAAAAGTAA+TGG | + | chr3_4:66570899-66570918 | Msa0515340:CDS | 40.0% | |
CATTCCCTTAATTGATGAGG+CGG | + | chr3_4:66570937-66570956 | Msa0515340:CDS | 40.0% | |
AAGTCCGCCTCATCAATTAA+GGG | - | chr3_4:66570944-66570963 | None:intergenic | 40.0% | |
CATTTCTGACATTGCCTTAC+AGG | + | chr3_4:66571394-66571413 | Msa0515340:intron | 40.0% | |
! | TCGTTTGAAGTTAGTGCAGT+TGG | + | chr3_4:66571442-66571461 | Msa0515340:CDS | 40.0% |
AGGAAAAAGAAAGACGATGC+CGG | - | chr3_4:66571557-66571576 | None:intergenic | 40.0% | |
! | TGCCTCAAGGTATTAGAGAA+AGG | - | chr3_4:66571577-66571596 | None:intergenic | 40.0% |
TTGAGGCAACAAAAACTGCA+GGG | + | chr3_4:66571589-66571608 | Msa0515340:intron | 40.0% | |
ATGTCCATACTCCATCTCAA+AGG | - | chr3_4:66571789-66571808 | None:intergenic | 40.0% | |
TTGAGATGGAGTATGGACAT+TGG | + | chr3_4:66571789-66571808 | Msa0515340:CDS | 40.0% | |
TGAGATGGAGTATGGACATT+GGG | + | chr3_4:66571790-66571809 | Msa0515340:CDS | 40.0% | |
!! | ATTGGGTTGATGAGCAAAAC+CGG | + | chr3_4:66571807-66571826 | Msa0515340:CDS | 40.0% |
TTCTCATTTCCGAGATTTGC+CGG | - | chr3_4:66571829-66571848 | None:intergenic | 40.0% | |
GTATTAGTGACATAGAGCTC+AGG | + | chr3_4:66571864-66571883 | Msa0515340:CDS | 40.0% | |
! | CGGCTGAAAGATTTTTCTTG+TGG | + | chr3_4:66571993-66572012 | Msa0515340:CDS | 40.0% |
! | AGATTTTTCTTGTGGATCGG+TGG | + | chr3_4:66572001-66572020 | Msa0515340:CDS | 40.0% |
TCTCGCCTTCTATCATTCTA+TGG | - | chr3_4:66572093-66572112 | None:intergenic | 40.0% | |
AATCGTTGTTGCTCTGTCAA+TGG | - | chr3_4:66572286-66572305 | None:intergenic | 40.0% | |
ATTGACAGAGCAACAACGAT+TGG | + | chr3_4:66572285-66572304 | Msa0515340:CDS | 40.0% | |
CGATTGGATATCGATAACCT+TGG | + | chr3_4:66572301-66572320 | Msa0515340:CDS | 40.0% | |
CTTGTTGACATGATTGTCCA+AGG | - | chr3_4:66572321-66572340 | None:intergenic | 40.0% | |
TTTCTCCATGCCTTGTGAAA+GGG | - | chr3_4:66572353-66572372 | None:intergenic | 40.0% | |
AGAAAGCTAGGTACAATACC+TGG | - | chr3_4:66572489-66572508 | None:intergenic | 40.0% | |
CATGATTTGATCACGGAGTT+CGG | - | chr3_4:66572627-66572646 | None:intergenic | 40.0% | |
TTTAACAGGCTGACCATCTT+CGG | + | chr3_4:66572779-66572798 | Msa0515340:intron | 40.0% | |
AGAATATTTCCAACGCCTGA+GGG | + | chr3_4:66572873-66572892 | Msa0515340:CDS | 40.0% | |
AACAAGACTAAGCAGGTTCT+CGG | - | chr3_4:66572927-66572946 | None:intergenic | 40.0% | |
! | TTTCCTGCAGTCTTTTGTTG+TGG | + | chr3_4:66573062-66573081 | Msa0515340:three_prime_UTR | 40.0% |
TGTTATTGGAGAATGGGGAG+TGG | - | chr3_4:66569749-66569768 | None:intergenic | 45.0% | |
! | AGACTGATTTAATTGCGGCG+CGG | + | chr3_4:66570783-66570802 | Msa0515340:five_prime_UTR | 45.0% |
TCTCGAGGAAACAAACTGTG+CGG | - | chr3_4:66570837-66570856 | None:intergenic | 45.0% | |
! | CACAGTTTGTTTCCTCGAGA+AGG | + | chr3_4:66570837-66570856 | Msa0515340:CDS | 45.0% |
ATACACACTCATCCTTCTCG+AGG | - | chr3_4:66570852-66570871 | None:intergenic | 45.0% | |
CGCCTCATCAATTAAGGGAA+TGG | - | chr3_4:66570939-66570958 | None:intergenic | 45.0% | |
CAAGTCCGCCTCATCAATTA+AGG | - | chr3_4:66570945-66570964 | None:intergenic | 45.0% | |
TAGTCAGAGGATGCTTCTCA+TGG | + | chr3_4:66571074-66571093 | Msa0515340:intron | 45.0% | |
GATGCTTCTCATGGTATCCT+AGG | + | chr3_4:66571083-66571102 | Msa0515340:CDS | 45.0% | |
TAAGAGCCGTCTGCGAAAAA+AGG | + | chr3_4:66571301-66571320 | Msa0515340:CDS | 45.0% | |
! | CTGCAGTTTTTGTTGCCTCA+AGG | - | chr3_4:66571590-66571609 | None:intergenic | 45.0% |
CTTGAGGCAACAAAAACTGC+AGG | + | chr3_4:66571588-66571607 | Msa0515340:intron | 45.0% | |
AGGGAATGTATATGGGTGGT+GGG | + | chr3_4:66571608-66571627 | Msa0515340:intron | 45.0% | |
!! | AATGTATATGGGTGGTGGGT+TGG | + | chr3_4:66571612-66571631 | Msa0515340:CDS | 45.0% |
ACAAACCAACCTGGATTCAC+AGG | - | chr3_4:66571664-66571683 | None:intergenic | 45.0% | |
AGCATCTTCACAAACCAACC+TGG | - | chr3_4:66571673-66571692 | None:intergenic | 45.0% | |
GCTGCAATTCCTACGGATAA+GGG | - | chr3_4:66571767-66571786 | None:intergenic | 45.0% | |
CTCAAAGGCTGCAATTCCTA+CGG | - | chr3_4:66571774-66571793 | None:intergenic | 45.0% | |
! | AGGAATTGCAGCCTTTGAGA+TGG | + | chr3_4:66571775-66571794 | Msa0515340:intron | 45.0% |
TGAGCAAAACCGGCAAATCT+CGG | + | chr3_4:66571817-66571836 | Msa0515340:CDS | 45.0% | |
TTTATGTGATGTCCGGCATG+TGG | + | chr3_4:66571963-66571982 | Msa0515340:CDS | 45.0% | |
TCACCTTGAGAAGCTCAGAA+GGG | - | chr3_4:66572033-66572052 | None:intergenic | 45.0% | |
ATCACCTTGAGAAGCTCAGA+AGG | - | chr3_4:66572034-66572053 | None:intergenic | 45.0% | |
GTTTCTCCATGCCTTGTGAA+AGG | - | chr3_4:66572354-66572373 | None:intergenic | 45.0% | |
GCAGCTGGACAATTCATTGA+AGG | + | chr3_4:66572400-66572419 | Msa0515340:CDS | 45.0% | |
! | TCTTGTGAGCTTTGTGAACC+AGG | + | chr3_4:66572468-66572487 | Msa0515340:CDS | 45.0% |
! | TGTTCGCGACATTTGTTGCA+AGG | - | chr3_4:66572812-66572831 | None:intergenic | 45.0% |
AGCTCGATGTTTGCTTGCTT+TGG | + | chr3_4:66572849-66572868 | Msa0515340:CDS | 45.0% | |
GCTCGATGTTTGCTTGCTTT+GGG | + | chr3_4:66572850-66572869 | Msa0515340:CDS | 45.0% | |
GAGAATATTTCCAACGCCTG+AGG | + | chr3_4:66572872-66572891 | Msa0515340:CDS | 45.0% | |
ACAAGACTAAGCAGGTTCTC+GGG | - | chr3_4:66572926-66572945 | None:intergenic | 45.0% | |
GTCTTGCAACAAGACTAAGC+AGG | - | chr3_4:66572934-66572953 | None:intergenic | 45.0% | |
TCTCCACAACAAAAGACTGC+AGG | - | chr3_4:66573068-66573087 | None:intergenic | 45.0% | |
TATTGGAGAATGGGGAGTGG+TGG | - | chr3_4:66569746-66569765 | None:intergenic | 50.0% | |
GGCCCTTCTTAGTGCATGTT+TGG | + | chr3_4:66570564-66570583 | Msa0515340:intron | 50.0% | |
GACGGCGAATTCATGCTCAA+TGG | - | chr3_4:66570815-66570834 | None:intergenic | 50.0% | |
GAGGAAACAAACTGTGCGGA+CGG | - | chr3_4:66570833-66570852 | None:intergenic | 50.0% | |
CTGCTGCACATAAGCCTGTA+AGG | - | chr3_4:66571411-66571430 | None:intergenic | 50.0% | |
AACGTGTTAGACAGCAGGTG+TGG | + | chr3_4:66571477-66571496 | Msa0515340:intron | 50.0% | |
ACGTGTTAGACAGCAGGTGT+GGG | + | chr3_4:66571478-66571497 | Msa0515340:intron | 50.0% | |
CTGCAGGGAATGTATATGGG+TGG | + | chr3_4:66571604-66571623 | Msa0515340:intron | 50.0% | |
CAGGGAATGTATATGGGTGG+TGG | + | chr3_4:66571607-66571626 | Msa0515340:intron | 50.0% | |
TTTGCTGGACCTGTGAATCC+AGG | + | chr3_4:66571652-66571671 | Msa0515340:CDS | 50.0% | |
CTAAGGACACCCTTATCCGT+AGG | + | chr3_4:66571755-66571774 | Msa0515340:intron | 50.0% | |
GGCTGCAATTCCTACGGATA+AGG | - | chr3_4:66571768-66571787 | None:intergenic | 50.0% | |
!! | GCAGCCTTTGAGATGGAGTA+TGG | + | chr3_4:66571782-66571801 | Msa0515340:CDS | 50.0% |
TGACATAGAGCTCAGGATGC+TGG | + | chr3_4:66571871-66571890 | Msa0515340:CDS | 50.0% | |
GTCCGGCATGTGGAAAACAA+CGG | + | chr3_4:66571973-66571992 | Msa0515340:CDS | 50.0% | |
!! | AGCCGTTGTTTTCCACATGC+CGG | - | chr3_4:66571978-66571997 | None:intergenic | 50.0% |
GCAGAAGATGCCCTTTCACA+AGG | + | chr3_4:66572340-66572359 | Msa0515340:CDS | 50.0% | |
AGATGCCCTTTCACAAGGCA+TGG | + | chr3_4:66572345-66572364 | Msa0515340:CDS | 50.0% | |
CACAAGGCATGGAGAAACTG+CGG | + | chr3_4:66572356-66572375 | Msa0515340:CDS | 50.0% | |
TCCACAGATGGCTACTGCAA+TGG | + | chr3_4:66572432-66572451 | Msa0515340:CDS | 50.0% | |
TCCATTGCAGTAGCCATCTG+TGG | - | chr3_4:66572436-66572455 | None:intergenic | 50.0% | |
GCAAACATCGAGCTGACTGA+CGG | - | chr3_4:66572843-66572862 | None:intergenic | 50.0% | |
ATAGTGAGCTCAAAGCCCTC+AGG | - | chr3_4:66572891-66572910 | None:intergenic | 50.0% | |
!! | TGAGGGCTTTGAGCTCACTA+TGG | + | chr3_4:66572890-66572909 | Msa0515340:CDS | 50.0% |
CAAGACTAAGCAGGTTCTCG+GGG | - | chr3_4:66572925-66572944 | None:intergenic | 50.0% | |
GGCTCTTACGAGCAGCTTCT+CGG | - | chr3_4:66571289-66571308 | None:intergenic | 55.0% | |
GCTCGAACGTGTTAGACAGC+AGG | + | chr3_4:66571472-66571491 | Msa0515340:CDS | 55.0% | |
CGTGTTAGACAGCAGGTGTG+GGG | + | chr3_4:66571479-66571498 | Msa0515340:intron | 55.0% | |
CTGGACCTGTGAATCCAGGT+TGG | + | chr3_4:66571656-66571675 | Msa0515340:intron | 55.0% | |
! | GAGCTCAGGATGCTGGTTGA+TGG | + | chr3_4:66571878-66571897 | Msa0515340:CDS | 55.0% |
TCGCCCTTCTGAGCTTCTCA+AGG | + | chr3_4:66572027-66572046 | Msa0515340:CDS | 55.0% | |
GCAAGGTTTCCTGCCGAAGA+TGG | - | chr3_4:66572795-66572814 | None:intergenic | 55.0% | |
! | CTCGCTGATAGCGTAGCAGC+TGG | + | chr3_4:66572385-66572404 | Msa0515340:CDS | 60.0% |
ACAGGCTGACCATCTTCGGC+AGG | + | chr3_4:66572783-66572802 | Msa0515340:intron | 60.0% | |
AGCTCAAAGCCCTCAGGCGT+TGG | - | chr3_4:66572885-66572904 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_4 | gene | 66569681 | 66573251 | 66569681 | ID=Msa0515340;Name=Msa0515340 |
chr3_4 | mRNA | 66569681 | 66573251 | 66569681 | ID=Msa0515340-mRNA-1;Parent=Msa0515340;Name=Msa0515340-mRNA-1;_AED=0.14;_eAED=0.14;_QI=432|1|1|1|0.87|0.88|9|312|363 |
chr3_4 | exon | 66569681 | 66570053 | 66569681 | ID=Msa0515340-mRNA-1:exon:17109;Parent=Msa0515340-mRNA-1 |
chr3_4 | exon | 66570762 | 66570982 | 66570762 | ID=Msa0515340-mRNA-1:exon:17110;Parent=Msa0515340-mRNA-1 |
chr3_4 | exon | 66571077 | 66571151 | 66571077 | ID=Msa0515340-mRNA-1:exon:17111;Parent=Msa0515340-mRNA-1 |
chr3_4 | exon | 66571263 | 66571322 | 66571263 | ID=Msa0515340-mRNA-1:exon:17112;Parent=Msa0515340-mRNA-1 |
chr3_4 | exon | 66571416 | 66571493 | 66571416 | ID=Msa0515340-mRNA-1:exon:17113;Parent=Msa0515340-mRNA-1 |
chr3_4 | exon | 66571610 | 66571673 | 66571610 | ID=Msa0515340-mRNA-1:exon:17114;Parent=Msa0515340-mRNA-1 |
chr3_4 | exon | 66571777 | 66572048 | 66571777 | ID=Msa0515340-mRNA-1:exon:17115;Parent=Msa0515340-mRNA-1 |
chr3_4 | exon | 66572262 | 66572489 | 66572262 | ID=Msa0515340-mRNA-1:exon:17116;Parent=Msa0515340-mRNA-1 |
chr3_4 | exon | 66572787 | 66573251 | 66572787 | ID=Msa0515340-mRNA-1:exon:17117;Parent=Msa0515340-mRNA-1 |
chr3_4 | five_prime_UTR | 66569681 | 66570053 | 66569681 | ID=Msa0515340-mRNA-1:five_prime_utr;Parent=Msa0515340-mRNA-1 |
chr3_4 | five_prime_UTR | 66570762 | 66570820 | 66570762 | ID=Msa0515340-mRNA-1:five_prime_utr;Parent=Msa0515340-mRNA-1 |
chr3_4 | CDS | 66570821 | 66570982 | 66570821 | ID=Msa0515340-mRNA-1:cds;Parent=Msa0515340-mRNA-1 |
chr3_4 | CDS | 66571077 | 66571151 | 66571077 | ID=Msa0515340-mRNA-1:cds;Parent=Msa0515340-mRNA-1 |
chr3_4 | CDS | 66571263 | 66571322 | 66571263 | ID=Msa0515340-mRNA-1:cds;Parent=Msa0515340-mRNA-1 |
chr3_4 | CDS | 66571416 | 66571493 | 66571416 | ID=Msa0515340-mRNA-1:cds;Parent=Msa0515340-mRNA-1 |
chr3_4 | CDS | 66571610 | 66571673 | 66571610 | ID=Msa0515340-mRNA-1:cds;Parent=Msa0515340-mRNA-1 |
chr3_4 | CDS | 66571777 | 66572048 | 66571777 | ID=Msa0515340-mRNA-1:cds;Parent=Msa0515340-mRNA-1 |
chr3_4 | CDS | 66572262 | 66572489 | 66572262 | ID=Msa0515340-mRNA-1:cds;Parent=Msa0515340-mRNA-1 |
chr3_4 | CDS | 66572787 | 66572939 | 66572787 | ID=Msa0515340-mRNA-1:cds;Parent=Msa0515340-mRNA-1 |
chr3_4 | three_prime_UTR | 66572940 | 66573251 | 66572940 | ID=Msa0515340-mRNA-1:three_prime_utr;Parent=Msa0515340-mRNA-1 |
Gene Sequence |
Protein sequence |