AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0649250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0649250 MtrunA17_Chr4g0041121 92.135 356 12 2 1 355 1 341 0.0 663
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0649250 AT2G31040.1 60.497 362 103 8 1 347 1 337 4.03e-147 419

Find 103 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCGACCAAAGACTAAATT+TGG 0.119809 4_3:-55859400 Msa0649250:exon
AGCTTTGGTGCCGGCTTTCT+TGG 0.168268 4_3:-55860386 Msa0649250:CDS
TACACATCTCTTACCATAAT+TGG 0.232454 4_3:+55861526 None:intergenic
GAAACCCCAAATTTAGTCTT+TGG 0.236449 4_3:+55859394 None:intergenic
AGTCTTTGGTCGATATATTT+AGG 0.241504 4_3:+55859408 None:intergenic
TGCCGGCTTTCTTGGTTCTT+TGG 0.245062 4_3:-55860378 Msa0649250:CDS
AGGATTCTTGTTCCAGAATA+TGG 0.258629 4_3:-55859536 Msa0649250:CDS
AAGTGCATAATTCCATATTC+TGG 0.258872 4_3:+55859524 None:intergenic
TGTAAACAGGAAGTGCCTTC+TGG 0.265849 4_3:-55861763 Msa0649250:intron
CCTACAGGATGTGCTGTTTC+GGG 0.276860 4_3:-55860996 Msa0649250:intron
ATGTGCTGTTTCGGGAATTA+AGG 0.286517 4_3:-55860988 Msa0649250:CDS
TAAGATAGGGAGAAACAAAA+TGG 0.302037 4_3:-55863304 Msa0649250:exon
ACCTACAGGATGTGCTGTTT+CGG 0.308666 4_3:-55860997 Msa0649250:intron
CACCAAGCTTCGTAAGTATT+GGG 0.317586 4_3:-55863106 Msa0649250:CDS
GATTCATATGAATGGTATAT+TGG 0.324237 4_3:+55863392 None:intergenic
AATTGGGCAGCCAAGATTAC+TGG 0.331100 4_3:-55859850 Msa0649250:CDS
ATAGCGGCCCTTGCACCGTT+TGG 0.337199 4_3:+55860314 None:intergenic
CATATCTATCTATAGATTAC+TGG 0.338490 4_3:-55863370 Msa0649250:five_prime_UTR
GCAAATAGAGACACCAATTA+TGG 0.341609 4_3:-55861539 Msa0649250:intron
ATCGACCAAAGACTAAATTT+GGG 0.357427 4_3:-55859399 Msa0649250:exon
TTTCTCCCTATCTTATGTTC+TGG 0.360949 4_3:+55863312 None:intergenic
ACCTTTGTTTGTCTTGGGTT+TGG 0.369123 4_3:+55863204 None:intergenic
AGAATAACCTTTGTTTGTCT+TGG 0.372585 4_3:+55863198 None:intergenic
GAATAACCTTTGTTTGTCTT+GGG 0.373162 4_3:+55863199 None:intergenic
ATTACTGGTTCCTGTTGTAT+TGG 0.379401 4_3:-55859835 Msa0649250:CDS
ACTGCCGTCAGTTGCAGCTT+TGG 0.380147 4_3:+55861197 None:intergenic
ATACAGGGAGCAGTATATTA+AGG 0.383424 4_3:-55860930 Msa0649250:intron
GATGATGAATCTTGTGATAT+TGG 0.384004 4_3:+55863240 None:intergenic
GTTAATTGCAGGGGAGCAAT+TGG 0.387442 4_3:-55859867 Msa0649250:intron
TAGCGGCCCTTGCACCGTTT+GGG 0.390012 4_3:+55860315 None:intergenic
CAGGAACCAGAACATAAGAT+AGG 0.403037 4_3:-55863318 Msa0649250:five_prime_UTR
TATTGAGCAGCCAATACTTC+GGG 0.403419 4_3:+55860950 None:intergenic
GTAAACAGGAAGTGCCTTCT+GGG 0.406227 4_3:-55861762 Msa0649250:intron
TAGCTTCTGATGATTATTTG+TGG 0.407042 4_3:-55863062 Msa0649250:CDS
CCACCAAGCTTCGTAAGTAT+TGG 0.407069 4_3:-55863107 Msa0649250:CDS
TTTGAAGGAGAAGATTGTTC+AGG 0.408297 4_3:+55862997 None:intergenic
TCATCAGAAGCTAAAGGGTC+AGG 0.410342 4_3:+55863072 None:intergenic
AAGTATTGGCTGCTCAATAC+AGG 0.415220 4_3:-55860946 Msa0649250:CDS
TCTATTTGCTGCTGTACAAC+AGG 0.415950 4_3:+55861553 None:intergenic
GCCGTCAGTTGCAGCTTTGG+TGG 0.426140 4_3:+55861200 None:intergenic
CAAGCGCTTACATTGGGTAT+AGG 0.428081 4_3:-55860759 Msa0649250:CDS
TTACGAAGCTTGGTGGTTGT+TGG 0.430101 4_3:+55863114 None:intergenic
CATACCAGTAGACCATTTCA+TGG 0.443885 4_3:+55863161 None:intergenic
ACAACAGGAACCAGTAATCT+TGG 0.444377 4_3:+55859840 None:intergenic
TTTGGCGTATATCCGCATGC+TGG 0.445119 4_3:-55860360 Msa0649250:CDS
CGAAGCTTGGTGGTTGTTGG+AGG 0.451253 4_3:+55863117 None:intergenic
TGGTTATGATTTATAATCGA+TGG 0.453315 4_3:-55859815 Msa0649250:CDS
AATAATCATCAGAAGCTAAA+GGG 0.460622 4_3:+55863067 None:intergenic
ACCTACCTAGCTGCAATCTC+AGG 0.464426 4_3:+55860699 None:intergenic
AAAGTGACAGCAAGAGAGTA+AGG 0.470284 4_3:-55861269 Msa0649250:CDS
TGAACAATCTTCTCCTTCAA+AGG 0.475235 4_3:-55862995 Msa0649250:intron
TTTGTTTGTCTTGGGTTTGG+TGG 0.476075 4_3:+55863207 None:intergenic
TAAATCATAACCAATACAAC+AGG 0.476198 4_3:+55859825 None:intergenic
TATTCCATTTGTCTTGCTCA+CGG 0.492378 4_3:+55861226 None:intergenic
AAACCCATGAAATGGTCTAC+TGG 0.495036 4_3:-55863165 Msa0649250:CDS
AAATAATCATCAGAAGCTAA+AGG 0.495271 4_3:+55863066 None:intergenic
ATGTTCTGGTTCCTGTGTTG+TGG 0.495930 4_3:+55863326 None:intergenic
CACGCCGTGAGCAAGACAAA+TGG 0.501285 4_3:-55861230 Msa0649250:CDS
CATGAAATGGTCTACTGGTA+TGG 0.501507 4_3:-55863160 Msa0649250:CDS
TGAATCATCCTTTCAAAATG+AGG 0.504403 4_3:+55863024 None:intergenic
AGGTTGCAAGCGCTTACATT+GGG 0.506487 4_3:-55860765 Msa0649250:CDS
GGTGATTACTGTTGCATCAA+AGG 0.508229 4_3:-55859432 Msa0649250:CDS
CACTAAACCCAAACGGTGCA+AGG 0.509069 4_3:-55860322 Msa0649250:CDS
ACCCCAATACTTACGAAGCT+TGG 0.512109 4_3:+55863104 None:intergenic
TTAATTGCAGGGGAGCAATT+GGG 0.514999 4_3:-55859866 Msa0649250:intron
CCAATACTTACGAAGCTTGG+TGG 0.515865 4_3:+55863107 None:intergenic
TTGGCGTATATCCGCATGCT+GGG 0.516325 4_3:-55860359 Msa0649250:CDS
ATAGATATGATTCATATGAA+TGG 0.516400 4_3:+55863384 None:intergenic
TGGTCTACTGGTATGGCTCC+TGG 0.518814 4_3:-55863153 Msa0649250:CDS
GAATTGATACCAATGCTAGT+TGG 0.520283 4_3:-55859500 Msa0649250:CDS
CTTCGTAAGTATTGGGGTGG+TGG 0.523937 4_3:-55863099 Msa0649250:CDS
ATAGAGTCATGAGCCTCGAC+AGG 0.533765 4_3:-55861726 Msa0649250:CDS
TCGTGAAAATCCCGAAGTAT+TGG 0.538551 4_3:-55860960 Msa0649250:CDS
CGCCAAAGAACCAAGAAAGC+CGG 0.543254 4_3:+55860376 None:intergenic
ACATTGGGTATAGGTGGCGT+TGG 0.545773 4_3:-55860750 Msa0649250:CDS
AAGATAGGGAGAAACAAAAT+GGG 0.546008 4_3:-55863303 Msa0649250:exon
GAGGTTGCAAGCGCTTACAT+TGG 0.551750 4_3:-55860766 Msa0649250:CDS
GTATTGAGCAGCCAATACTT+CGG 0.557898 4_3:+55860949 None:intergenic
GAAGGAGAAGATTGTTCAGG+TGG 0.562283 4_3:+55863000 None:intergenic
GCCACCAAAGCTGCAACTGA+CGG 0.578335 4_3:-55861201 Msa0649250:CDS
AGGAACCAGAACATAAGATA+GGG 0.584394 4_3:-55863317 Msa0649250:five_prime_UTR
CCGCATGCTGGGAAGTAGCA+TGG 0.585601 4_3:-55860348 Msa0649250:CDS
GGAGGACCACCGTAGTCACC+AGG 0.586218 4_3:+55863135 None:intergenic
ATACCAGTAGACCATTTCAT+GGG 0.589861 4_3:+55863162 None:intergenic
TTGTCTTGCTCACGGCGTGT+TGG 0.591493 4_3:+55861234 None:intergenic
GGTATGGCTCCTGGTGACTA+CGG 0.593975 4_3:-55863144 Msa0649250:CDS
CATCAGAAGCTAAAGGGTCA+GGG 0.595141 4_3:+55863073 None:intergenic
AGTATTGGCTGCTCAATACA+GGG 0.596425 4_3:-55860945 Msa0649250:CDS
ATGGACTCACTAAACCCAAA+CGG 0.611635 4_3:-55860329 Msa0649250:CDS
ACCAAACCCAAGACAAACAA+AGG 0.615615 4_3:-55863205 Msa0649250:CDS
ACTAAACCCAAACGGTGCAA+GGG 0.616920 4_3:-55860321 Msa0649250:CDS
TCGACCAAAGACTAAATTTG+GGG 0.617007 4_3:-55859398 Msa0649250:exon
CCATGCTACTTCCCAGCATG+CGG 0.623983 4_3:+55860348 None:intergenic
GTGACAGCAAGAGAGTAAGG+TGG 0.625416 4_3:-55861266 Msa0649250:CDS
GCGCTTACATTGGGTATAGG+TGG 0.629044 4_3:-55860756 Msa0649250:CDS
ATTCTCCTGAGATTGCAGCT+AGG 0.629223 4_3:-55860704 Msa0649250:intron
AACTATAGATTACTTGATAG+CGG 0.638773 4_3:+55860298 None:intergenic
ACCAAGCTTCGTAAGTATTG+GGG 0.639162 4_3:-55863105 Msa0649250:CDS
TTGTAGAGCGAGACCTGTCG+AGG 0.640320 4_3:+55861713 None:intergenic
TTTAAGCTTAGAAACCCAGA+AGG 0.648797 4_3:+55861748 None:intergenic
AAGCTTCGTAAGTATTGGGG+TGG 0.659164 4_3:-55863102 Msa0649250:CDS
TCAATACATAGCCACAACAC+AGG 0.678048 4_3:-55863337 Msa0649250:five_prime_UTR
ATGGCTCCTGGTGACTACGG+TGG 0.710999 4_3:-55863141 Msa0649250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATACAGAAAATAAATT+GGG + chr4_3:55860037-55860056 None:intergenic 10.0%
!! TTATAATACAGAAAATAAAT+TGG + chr4_3:55860038-55860057 None:intergenic 10.0%
!! AATATCAATATTACTTAAAA+GGG + chr4_3:55860079-55860098 None:intergenic 10.0%
!! AAATATCAATATTACTTAAA+AGG + chr4_3:55860080-55860099 None:intergenic 10.0%
!!! TCAAGAAATTTTAATATAAT+TGG - chr4_3:55860532-55860551 Msa0649250:intron 10.0%
!!! ATATTTTTTTTTTTGTAAAC+AGG - chr4_3:55860734-55860753 Msa0649250:CDS 10.0%
!! CATTCTTATATATTACATAT+AGG + chr4_3:55860010-55860029 None:intergenic 15.0%
!! GTATTATAATTAGATTTGAT+TGG - chr4_3:55860049-55860068 Msa0649250:intron 15.0%
!! ATTGAAGTAAAAGTAAAATT+TGG + chr4_3:55860138-55860157 None:intergenic 15.0%
!! AAATAGTTATTAAACTCTTT+CGG + chr4_3:55862335-55862354 None:intergenic 15.0%
!! TGTCTATATAAATTTAATGT+AGG - chr4_3:55862457-55862476 Msa0649250:intron 15.0%
!! GTCTATATAAATTTAATGTA+GGG - chr4_3:55862458-55862477 Msa0649250:intron 15.0%
!! AATTACTATTCTATAAATGA+AGG - chr4_3:55862753-55862772 Msa0649250:intron 15.0%
!! TCAAATTTAATATATAAGAG+TGG - chr4_3:55862848-55862867 Msa0649250:intron 15.0%
!! ATAGATATGATTCATATGAA+TGG + chr4_3:55859129-55859148 None:intergenic 20.0%
!! AAAAAAGTAAAAACCTTTGA+AGG + chr4_3:55859531-55859550 None:intergenic 20.0%
!!! TGTTTTTGTTGGAATTATTA+TGG - chr4_3:55859596-55859615 Msa0649250:intron 20.0%
!! AATTCAGTATTTAGTAGAAA+TGG - chr4_3:55860236-55860255 Msa0649250:intron 20.0%
!! ATGATTATGTGAATTAAATC+TGG + chr4_3:55860279-55860298 None:intergenic 20.0%
!! CAATAGATATAGATATTAAG+AGG + chr4_3:55860367-55860386 None:intergenic 20.0%
!! ATATCTATTGAACACATTTA+TGG - chr4_3:55860377-55860396 Msa0649250:CDS 20.0%
!! TATCTATTGAACACATTTAT+GGG - chr4_3:55860378-55860397 Msa0649250:CDS 20.0%
!!! TTTTGTTTAATTCCATGAAT+TGG - chr4_3:55860700-55860719 Msa0649250:intron 20.0%
!! GAATTAAATACTAAAGATCA+GGG + chr4_3:55861103-55861122 None:intergenic 20.0%
!! AGAATTAAATACTAAAGATC+AGG + chr4_3:55861104-55861123 None:intergenic 20.0%
!! TAAAAAGATAAATGAACCTT+TGG + chr4_3:55861195-55861214 None:intergenic 20.0%
!! TTACAAATTTAATGTCTATC+AGG - chr4_3:55861212-55861231 Msa0649250:CDS 20.0%
!!! GTATCTAGTTTTTTACTTAT+TGG - chr4_3:55861377-55861396 Msa0649250:intron 20.0%
!!! TTAACTTGGTTATTTTGAAT+TGG - chr4_3:55861856-55861875 Msa0649250:intron 20.0%
!!! TTAACCATATTTGATAGTAT+AGG + chr4_3:55861893-55861912 None:intergenic 20.0%
!!! TACCTCTAAAGAATTTTTTA+AGG - chr4_3:55862058-55862077 Msa0649250:intron 20.0%
!! AACCTTAAAAAATTCTTTAG+AGG + chr4_3:55862063-55862082 None:intergenic 20.0%
!!! TGAAGTTTCTATTTTTTTCT+CGG - chr4_3:55862294-55862313 Msa0649250:intron 20.0%
!! TATATTATGGTAAAATATGC+TGG - chr4_3:55862432-55862451 Msa0649250:intron 20.0%
!! ATATTATGGTAAAATATGCT+GGG - chr4_3:55862433-55862452 Msa0649250:intron 20.0%
!! GTAACTCAGATTTAATAAAT+AGG - chr4_3:55862803-55862822 Msa0649250:intron 20.0%
! GATTCATATGAATGGTATAT+TGG + chr4_3:55859121-55859140 None:intergenic 25.0%
! CATATCTATCTATAGATTAC+TGG - chr4_3:55859140-55859159 Msa0649250:three_prime_UTR 25.0%
!!! CATTTCATGGGTTTTTTATT+GGG + chr4_3:55859339-55859358 None:intergenic 25.0%
! AATAATCATCAGAAGCTAAA+GGG + chr4_3:55859446-55859465 None:intergenic 25.0%
! AAATAATCATCAGAAGCTAA+AGG + chr4_3:55859447-55859466 None:intergenic 25.0%
!! ATTTTGTTCCTCATTTTGAA+AGG - chr4_3:55859478-55859497 Msa0649250:CDS 25.0%
!! ACATTCTATAATTTTCCATC+TGG - chr4_3:55859555-55859574 Msa0649250:intron 25.0%
!! TGTTACTTGATTATTGTGTT+TGG - chr4_3:55859803-55859822 Msa0649250:intron 25.0%
!! ATATTGATATTTGAGACCAT+TGG - chr4_3:55860088-55860107 Msa0649250:intron 25.0%
!! ATTCATTCCAATTTTCAGAT+AGG - chr4_3:55860446-55860465 Msa0649250:intron 25.0%
! GAATGATACTAAACAATAGA+TGG - chr4_3:55860474-55860493 Msa0649250:intron 25.0%
! TAAAATTTCTTGAGTCAACA+AGG + chr4_3:55860525-55860544 None:intergenic 25.0%
!!! GCTATCGATTATTTTTTTGA+AGG - chr4_3:55860663-55860682 Msa0649250:intron 25.0%
!!! TCGATTATTTTTTTGAAGGA+AGG - chr4_3:55860667-55860686 Msa0649250:intron 25.0%
! TTGATTTATGAACTGTAGTA+TGG - chr4_3:55860905-55860924 Msa0649250:intron 25.0%
! TTCATGAGTATTTAATTCAG+AGG - chr4_3:55861047-55861066 Msa0649250:intron 25.0%
! TCATGAGTATTTAATTCAGA+GGG - chr4_3:55861048-55861067 Msa0649250:intron 25.0%
!! TGAAAAACAAAAAAAGCACA+TGG - chr4_3:55861152-55861171 Msa0649250:intron 25.0%
! CTTATATAAGTGTATAACCT+AGG - chr4_3:55861413-55861432 Msa0649250:intron 25.0%
!! TTTGGGTTAAAAGTAAACTA+TGG + chr4_3:55861463-55861482 None:intergenic 25.0%
!! AATCGTCAAGTTATCATTTT+GGG + chr4_3:55861480-55861499 None:intergenic 25.0%
! TTCTGTTCCTAAACTTAATT+TGG - chr4_3:55861705-55861724 Msa0649250:CDS 25.0%
! TGAAAAGCCAAATTAAGTTT+AGG + chr4_3:55861715-55861734 None:intergenic 25.0%
! AACTATAGATTACTTGATAG+CGG + chr4_3:55862215-55862234 None:intergenic 25.0%
! TATTATGGTAAAATATGCTG+GGG - chr4_3:55862434-55862453 Msa0649250:intron 25.0%
! GAAAAATGAAACAATGTTCA+TGG + chr4_3:55862577-55862596 None:intergenic 25.0%
! TAAATCATAACCAATACAAC+AGG + chr4_3:55862688-55862707 None:intergenic 25.0%
! TGGTTATGATTTATAATCGA+TGG - chr4_3:55862695-55862714 Msa0649250:intron 25.0%
! ATAGGAATGAGAATTAAGAA+TGG - chr4_3:55862821-55862840 Msa0649250:intron 25.0%
!! TTAACCAATATTCTAGGTTT+TGG + chr4_3:55862915-55862934 None:intergenic 25.0%
TAAGATAGGGAGAAACAAAA+TGG - chr4_3:55859206-55859225 Msa0649250:three_prime_UTR 30.0%
AAGATAGGGAGAAACAAAAT+GGG - chr4_3:55859207-55859226 Msa0649250:three_prime_UTR 30.0%
GATGATGAATCTTGTGATAT+TGG + chr4_3:55859273-55859292 None:intergenic 30.0%
! GAATAACCTTTGTTTGTCTT+GGG + chr4_3:55859314-55859333 None:intergenic 30.0%
! AGAATAACCTTTGTTTGTCT+TGG + chr4_3:55859315-55859334 None:intergenic 30.0%
!!! CCATTTCATGGGTTTTTTAT+TGG + chr4_3:55859340-55859359 None:intergenic 30.0%
CCAATAAAAAACCCATGAAA+TGG - chr4_3:55859337-55859356 Msa0649250:three_prime_UTR 30.0%
TAGCTTCTGATGATTATTTG+TGG - chr4_3:55859448-55859467 Msa0649250:CDS 30.0%
TGAATCATCCTTTCAAAATG+AGG + chr4_3:55859489-55859508 None:intergenic 30.0%
ATTGATTGATGAATTGCTTG+TGG - chr4_3:55859631-55859650 Msa0649250:intron 30.0%
TTGATTGATGAATTGCTTGT+GGG - chr4_3:55859632-55859651 Msa0649250:intron 30.0%
ATGATGATTGTGTATGTACA+CGG - chr4_3:55859677-55859696 Msa0649250:intron 30.0%
! ATTTTACTCCTTTGTTCCAA+TGG + chr4_3:55860107-55860126 None:intergenic 30.0%
AAGAAAGACTAATAAACGCA+TGG + chr4_3:55860177-55860196 None:intergenic 30.0%
TTACATAATGATACTCTGTG+AGG - chr4_3:55860196-55860215 Msa0649250:intron 30.0%
!! AGATATTAAGAGGCATTTGA+TGG + chr4_3:55860357-55860376 None:intergenic 30.0%
! AACAGTTACTTTGTTTAGCA+TGG - chr4_3:55860418-55860437 Msa0649250:intron 30.0%
TCTGATTCCTATCTGAAAAT+TGG + chr4_3:55860456-55860475 None:intergenic 30.0%
! TGGTTTTTGATAGAACATCA+TGG - chr4_3:55860552-55860571 Msa0649250:intron 30.0%
TTTATGTCAGTACCAATTCA+TGG + chr4_3:55860715-55860734 None:intergenic 30.0%
TACACATCTCTTACCATAAT+TGG + chr4_3:55860987-55861006 None:intergenic 30.0%
!!! TTGTTGTGTTGTTTTTCCAA+AGG - chr4_3:55861176-55861195 Msa0649250:intron 30.0%
TATAAGTGTATAACCTAGGA+CGG - chr4_3:55861417-55861436 Msa0649250:intron 30.0%
! CAATCGTCAAGTTATCATTT+TGG + chr4_3:55861481-55861500 None:intergenic 30.0%
TGTTGATATTAACTACCTAC+AGG - chr4_3:55861499-55861518 Msa0649250:intron 30.0%
! TCTTCTACTACTGATTAACT+TGG - chr4_3:55861842-55861861 Msa0649250:intron 30.0%
ATTTATCCAATATCCCTCAA+TGG + chr4_3:55861967-55861986 None:intergenic 30.0%
! TTCTTTCATGTTTTCAGCTT+TGG - chr4_3:55862109-55862128 Msa0649250:intron 30.0%
ATATTATCCAAGATGTGAAC+AGG - chr4_3:55862403-55862422 Msa0649250:intron 30.0%
TATTATCCAAGATGTGAACA+GGG - chr4_3:55862404-55862423 Msa0649250:intron 30.0%
GAACAGGGAGAAATATATTA+TGG - chr4_3:55862419-55862438 Msa0649250:intron 30.0%
TTCTCCAAAACCTAGAATAT+TGG - chr4_3:55862908-55862927 Msa0649250:intron 30.0%
! CCTAGAATATTGGTTAAACT+CGG - chr4_3:55862918-55862937 Msa0649250:intron 30.0%
AAGTGCATAATTCCATATTC+TGG + chr4_3:55862989-55863008 None:intergenic 30.0%
AGTCTTTGGTCGATATATTT+AGG + chr4_3:55863105-55863124 None:intergenic 30.0%
TATCGACCAAAGACTAAATT+TGG - chr4_3:55863110-55863129 Msa0649250:CDS 30.0%
ATCGACCAAAGACTAAATTT+GGG - chr4_3:55863111-55863130 Msa0649250:CDS 30.0%
AGGAACCAGAACATAAGATA+GGG - chr4_3:55859193-55859212 Msa0649250:three_prime_UTR 35.0%
TTTCTCCCTATCTTATGTTC+TGG + chr4_3:55859201-55859220 None:intergenic 35.0%
ATACCAGTAGACCATTTCAT+GGG + chr4_3:55859351-55859370 None:intergenic 35.0%
TTTGAAGGAGAAGATTGTTC+AGG + chr4_3:55859516-55859535 None:intergenic 35.0%
TGAACAATCTTCTCCTTCAA+AGG - chr4_3:55859515-55859534 Msa0649250:CDS 35.0%
!!! TGAATTGGTGCTGTTTTTGT+TGG - chr4_3:55859585-55859604 Msa0649250:intron 35.0%
GAAAGGGATTAGGATTAAGT+TGG + chr4_3:55859911-55859930 None:intergenic 35.0%
! GTTACTTGTTAGGCTTGAAA+GGG + chr4_3:55859927-55859946 None:intergenic 35.0%
! TGTTACTTGTTAGGCTTGAA+AGG + chr4_3:55859928-55859947 None:intergenic 35.0%
! ATTTGAGACCATTGGAACAA+AGG - chr4_3:55860096-55860115 Msa0649250:intron 35.0%
TAATGATACTCTGTGAGGAA+AGG - chr4_3:55860201-55860220 Msa0649250:intron 35.0%
ATTGAACACATTTATGGGTG+TGG - chr4_3:55860383-55860402 Msa0649250:CDS 35.0%
TTTATGGGTGTGGAAATGTA+TGG - chr4_3:55860393-55860412 Msa0649250:intron 35.0%
! CAACATTTTTGTCACAATGC+GGG + chr4_3:55860602-55860621 None:intergenic 35.0%
! CCAACATTTTTGTCACAATG+CGG + chr4_3:55860603-55860622 None:intergenic 35.0%
ACTCAAGATATCTTGGTGAA+TGG - chr4_3:55860641-55860660 Msa0649250:intron 35.0%
TTTAAGCTTAGAAACCCAGA+AGG + chr4_3:55860765-55860784 None:intergenic 35.0%
GCAAATAGAGACACCAATTA+TGG - chr4_3:55860971-55860990 Msa0649250:CDS 35.0%
TATTCCATTTGTCTTGCTCA+CGG + chr4_3:55861287-55861306 None:intergenic 35.0%
ATACAGGGAGCAGTATATTA+AGG - chr4_3:55861580-55861599 Msa0649250:CDS 35.0%
! TGGCTTTTCAGTTAAAGAAG+AGG - chr4_3:55861725-55861744 Msa0649250:CDS 35.0%
! TATTTGATAGTATAGGCAGC+AGG + chr4_3:55861886-55861905 None:intergenic 35.0%
GCTGCCTATACTATCAAATA+TGG - chr4_3:55861886-55861905 Msa0649250:intron 35.0%
ATGTTTCCATTGAGGGATAT+TGG - chr4_3:55861958-55861977 Msa0649250:intron 35.0%
!! TCATTTTTCACGTTGTTCGT+TGG - chr4_3:55862588-55862607 Msa0649250:intron 35.0%
AACTTGTGGATGTTAATTGC+AGG - chr4_3:55862632-55862651 Msa0649250:intron 35.0%
ACTTGTGGATGTTAATTGCA+GGG - chr4_3:55862633-55862652 Msa0649250:intron 35.0%
!! ATTACTGGTTCCTGTTGTAT+TGG - chr4_3:55862675-55862694 Msa0649250:intron 35.0%
GAGTGAATGAGAGTTAAGAA+TGG - chr4_3:55862781-55862800 Msa0649250:intron 35.0%
!!! GTTTTGGAGAAACTAAAGCT+AGG + chr4_3:55862899-55862918 None:intergenic 35.0%
CCGAGTTTAACCAATATTCT+AGG + chr4_3:55862921-55862940 None:intergenic 35.0%
!!! GGTGTTTTAACTGCTTAACA+AGG - chr4_3:55862939-55862958 Msa0649250:intron 35.0%
AGGATTCTTGTTCCAGAATA+TGG - chr4_3:55862974-55862993 Msa0649250:intron 35.0%
GAATTGATACCAATGCTAGT+TGG - chr4_3:55863010-55863029 Msa0649250:CDS 35.0%
GTGAAAAAACCAACTAGCAT+TGG + chr4_3:55863022-55863041 None:intergenic 35.0%
! AACTTTTGCACAAGCTATAG+AGG - chr4_3:55863054-55863073 Msa0649250:CDS 35.0%
TCGACCAAAGACTAAATTTG+GGG - chr4_3:55863112-55863131 Msa0649250:CDS 35.0%
! GAAACCCCAAATTTAGTCTT+TGG + chr4_3:55863119-55863138 None:intergenic 35.0%
TCAATACATAGCCACAACAC+AGG - chr4_3:55859173-55859192 Msa0649250:three_prime_UTR 40.0%
CAGGAACCAGAACATAAGAT+AGG - chr4_3:55859192-55859211 Msa0649250:three_prime_UTR 40.0%
TTTGTTTGTCTTGGGTTTGG+TGG + chr4_3:55859306-55859325 None:intergenic 40.0%
ACCAAACCCAAGACAAACAA+AGG - chr4_3:55859305-55859324 Msa0649250:three_prime_UTR 40.0%
! ACCTTTGTTTGTCTTGGGTT+TGG + chr4_3:55859309-55859328 None:intergenic 40.0%
AAACCCATGAAATGGTCTAC+TGG - chr4_3:55859345-55859364 Msa0649250:three_prime_UTR 40.0%
CATACCAGTAGACCATTTCA+TGG + chr4_3:55859352-55859371 None:intergenic 40.0%
CATGAAATGGTCTACTGGTA+TGG - chr4_3:55859350-55859369 Msa0649250:three_prime_UTR 40.0%
CACCAAGCTTCGTAAGTATT+GGG - chr4_3:55859404-55859423 Msa0649250:exon 40.0%
! ACCAAGCTTCGTAAGTATTG+GGG - chr4_3:55859405-55859424 Msa0649250:exon 40.0%
CCAATTCAAACACAACCAGA+TGG + chr4_3:55859573-55859592 None:intergenic 40.0%
CCATCTGGTTGTGTTTGAAT+TGG - chr4_3:55859570-55859589 Msa0649250:intron 40.0%
TGTTAGGCTTGAAAGGGATT+AGG + chr4_3:55859921-55859940 None:intergenic 40.0%
! CTCAGTGCTTGTTACTTGTT+AGG + chr4_3:55859937-55859956 None:intergenic 40.0%
! TTTTTGTCACAATGCGGGTT+TGG + chr4_3:55860597-55860616 None:intergenic 40.0%
CCGCATTGTGACAAAAATGT+TGG - chr4_3:55860600-55860619 Msa0649250:intron 40.0%
! GTGACAAAAATGTTGGTTGC+TGG - chr4_3:55860607-55860626 Msa0649250:intron 40.0%
! AAAATGTTGGTTGCTGGTAG+TGG - chr4_3:55860613-55860632 Msa0649250:intron 40.0%
! TCTATTTGCTGCTGTACAAC+AGG + chr4_3:55860960-55860979 None:intergenic 40.0%
AAAGTGACAGCAAGAGAGTA+AGG - chr4_3:55861241-55861260 Msa0649250:CDS 40.0%
!! ATGTGCTGTTTCGGGAATTA+AGG - chr4_3:55861522-55861541 Msa0649250:intron 40.0%
TCGTGAAAATCCCGAAGTAT+TGG - chr4_3:55861550-55861569 Msa0649250:CDS 40.0%
TATTGAGCAGCCAATACTTC+GGG + chr4_3:55861563-55861582 None:intergenic 40.0%
GTATTGAGCAGCCAATACTT+CGG + chr4_3:55861564-55861583 None:intergenic 40.0%
!! AAGTATTGGCTGCTCAATAC+AGG - chr4_3:55861564-55861583 Msa0649250:CDS 40.0%
!! AGTATTGGCTGCTCAATACA+GGG - chr4_3:55861565-55861584 Msa0649250:CDS 40.0%
AGGTACTCAACATTGTTGTC+TGG - chr4_3:55861600-55861619 Msa0649250:intron 40.0%
ACTCAACATTGTTGTCTGGT+TGG - chr4_3:55861604-55861623 Msa0649250:intron 40.0%
CAATGTCGCGATGAATGAAA+AGG + chr4_3:55861663-55861682 None:intergenic 40.0%
TCAGTGTCATGTTTCCATTG+AGG - chr4_3:55861950-55861969 Msa0649250:intron 40.0%
CAGTGTCATGTTTCCATTGA+GGG - chr4_3:55861951-55861970 Msa0649250:intron 40.0%
ATGGACTCACTAAACCCAAA+CGG - chr4_3:55862181-55862200 Msa0649250:intron 40.0%
ATTTCTCCCTGTTCACATCT+TGG + chr4_3:55862413-55862432 None:intergenic 40.0%
CACATGTGAGAACACTTGTT+AGG - chr4_3:55862525-55862544 Msa0649250:intron 40.0%
TTCGTTGGCATAGATAACAG+AGG - chr4_3:55862603-55862622 Msa0649250:intron 40.0%
AACAGAGGCTTAACAACTTG+TGG - chr4_3:55862618-55862637 Msa0649250:intron 40.0%
CTTGTGGATGTTAATTGCAG+GGG - chr4_3:55862634-55862653 Msa0649250:intron 40.0%
TTAATTGCAGGGGAGCAATT+GGG - chr4_3:55862644-55862663 Msa0649250:intron 40.0%
ACAACAGGAACCAGTAATCT+TGG + chr4_3:55862673-55862692 None:intergenic 40.0%
! GTCCTCTTTTGATATGCGAT+TGG - chr4_3:55862727-55862746 Msa0649250:intron 40.0%
CTCCAATCGCATATCAAAAG+AGG + chr4_3:55862732-55862751 None:intergenic 40.0%
! TAACAAGGCTGTTTCAATGC+AGG - chr4_3:55862954-55862973 Msa0649250:intron 40.0%
! TTTTGCACAAGCTATAGAGG+AGG - chr4_3:55863057-55863076 Msa0649250:CDS 40.0%
GGTGATTACTGTTGCATCAA+AGG - chr4_3:55863078-55863097 Msa0649250:CDS 40.0%
!! ATGTTCTGGTTCCTGTGTTG+TGG + chr4_3:55859187-55859206 None:intergenic 45.0%
! TTACGAAGCTTGGTGGTTGT+TGG + chr4_3:55859399-55859418 None:intergenic 45.0%
CCAATACTTACGAAGCTTGG+TGG + chr4_3:55859406-55859425 None:intergenic 45.0%
CCACCAAGCTTCGTAAGTAT+TGG - chr4_3:55859403-55859422 Msa0649250:exon 45.0%
ACCCCAATACTTACGAAGCT+TGG + chr4_3:55859409-55859428 None:intergenic 45.0%
!! AAGCTTCGTAAGTATTGGGG+TGG - chr4_3:55859408-55859427 Msa0649250:CDS 45.0%
CATCAGAAGCTAAAGGGTCA+GGG + chr4_3:55859440-55859459 None:intergenic 45.0%
TCATCAGAAGCTAAAGGGTC+AGG + chr4_3:55859441-55859460 None:intergenic 45.0%
GAAGGAGAAGATTGTTCAGG+TGG + chr4_3:55859513-55859532 None:intergenic 45.0%
!! CACTTTCGATCAGAAGTGTC+AGG - chr4_3:55859766-55859785 Msa0649250:intron 45.0%
! ACAATGCGGGTTTGGTTCAA+TGG + chr4_3:55860589-55860608 None:intergenic 45.0%
GGTGGTGACTCAAGATATCT+TGG - chr4_3:55860634-55860653 Msa0649250:intron 45.0%
!! TGTAAACAGGAAGTGCCTTC+TGG - chr4_3:55860747-55860766 Msa0649250:CDS 45.0%
!! GTAAACAGGAAGTGCCTTCT+GGG - chr4_3:55860748-55860767 Msa0649250:CDS 45.0%
!! ACCTACAGGATGTGCTGTTT+CGG - chr4_3:55861513-55861532 Msa0649250:intron 45.0%
AGGTTGCAAGCGCTTACATT+GGG - chr4_3:55861745-55861764 Msa0649250:CDS 45.0%
CAAGCGCTTACATTGGGTAT+AGG - chr4_3:55861751-55861770 Msa0649250:CDS 45.0%
ATTCTCCTGAGATTGCAGCT+AGG - chr4_3:55861806-55861825 Msa0649250:intron 45.0%
!! CATGTTTTCAGCTTTGGTGC+CGG - chr4_3:55862115-55862134 Msa0649250:intron 45.0%
ACTAAACCCAAACGGTGCAA+GGG - chr4_3:55862189-55862208 Msa0649250:intron 45.0%
GTTAATTGCAGGGGAGCAAT+TGG - chr4_3:55862643-55862662 Msa0649250:intron 45.0%
AATTGGGCAGCCAAGATTAC+TGG - chr4_3:55862660-55862679 Msa0649250:intron 45.0%
!! TCAAAAATATATATTAATAA+GGG + chr4_3:55861026-55861045 None:intergenic 5.0%
!! ATCAAAAATATATATTAATA+AGG + chr4_3:55861027-55861046 None:intergenic 5.0%
!! CTTCGTAAGTATTGGGGTGG+TGG - chr4_3:55859411-55859430 Msa0649250:CDS 50.0%
!! ATGTTGGTTGCTGGTAGTGG+TGG - chr4_3:55860616-55860635 Msa0649250:intron 50.0%
ATAGAGTCATGAGCCTCGAC+AGG - chr4_3:55860784-55860803 Msa0649250:intron 50.0%
GTGACAGCAAGAGAGTAAGG+TGG - chr4_3:55861244-55861263 Msa0649250:CDS 50.0%
TGTATAACCTAGGACGGCGT+AGG - chr4_3:55861423-55861442 Msa0649250:intron 50.0%
!! CCTACAGGATGTGCTGTTTC+GGG - chr4_3:55861514-55861533 Msa0649250:intron 50.0%
GAGGTTGCAAGCGCTTACAT+TGG - chr4_3:55861744-55861763 Msa0649250:CDS 50.0%
GCGCTTACATTGGGTATAGG+TGG - chr4_3:55861754-55861773 Msa0649250:CDS 50.0%
ACATTGGGTATAGGTGGCGT+TGG - chr4_3:55861760-55861779 Msa0649250:intron 50.0%
TCCTGAGATTGCAGCTAGGT+AGG - chr4_3:55861810-55861829 Msa0649250:intron 50.0%
ACCTACCTAGCTGCAATCTC+AGG + chr4_3:55861814-55861833 None:intergenic 50.0%
!! TGCCGGCTTTCTTGGTTCTT+TGG - chr4_3:55862132-55862151 Msa0649250:intron 50.0%
CGCCAAAGAACCAAGAAAGC+CGG + chr4_3:55862137-55862156 None:intergenic 50.0%
TTTGGCGTATATCCGCATGC+TGG - chr4_3:55862150-55862169 Msa0649250:intron 50.0%
TTGGCGTATATCCGCATGCT+GGG - chr4_3:55862151-55862170 Msa0649250:intron 50.0%
CACTAAACCCAAACGGTGCA+AGG - chr4_3:55862188-55862207 Msa0649250:intron 50.0%
TGGTCTACTGGTATGGCTCC+TGG - chr4_3:55859357-55859376 Msa0649250:three_prime_UTR 55.0%
GGTATGGCTCCTGGTGACTA+CGG - chr4_3:55859366-55859385 Msa0649250:three_prime_UTR 55.0%
! CGAAGCTTGGTGGTTGTTGG+AGG + chr4_3:55859396-55859415 None:intergenic 55.0%
TTGTAGAGCGAGACCTGTCG+AGG + chr4_3:55860800-55860819 None:intergenic 55.0%
TTGTCTTGCTCACGGCGTGT+TGG + chr4_3:55861279-55861298 None:intergenic 55.0%
CACGCCGTGAGCAAGACAAA+TGG - chr4_3:55861280-55861299 Msa0649250:intron 55.0%
GCCACCAAAGCTGCAACTGA+CGG - chr4_3:55861309-55861328 Msa0649250:intron 55.0%
ACTGCCGTCAGTTGCAGCTT+TGG + chr4_3:55861316-55861335 None:intergenic 55.0%
TCTATGTCCTACGCCGTCCT+AGG + chr4_3:55861433-55861452 None:intergenic 55.0%
CCCGAAACAGCACATCCTGT+AGG + chr4_3:55861517-55861536 None:intergenic 55.0%
!! AGCTTTGGTGCCGGCTTTCT+TGG - chr4_3:55862124-55862143 Msa0649250:intron 55.0%
! CCATGCTACTTCCCAGCATG+CGG + chr4_3:55862165-55862184 None:intergenic 55.0%
ATGGCTCCTGGTGACTACGG+TGG - chr4_3:55859369-55859388 Msa0649250:three_prime_UTR 60.0%
! GCCGTCAGTTGCAGCTTTGG+TGG + chr4_3:55861313-55861332 None:intergenic 60.0%
CCGCATGCTGGGAAGTAGCA+TGG - chr4_3:55862162-55862181 Msa0649250:intron 60.0%
TAGCGGCCCTTGCACCGTTT+GGG + chr4_3:55862198-55862217 None:intergenic 60.0%
ATAGCGGCCCTTGCACCGTT+TGG + chr4_3:55862199-55862218 None:intergenic 60.0%
GGAGGACCACCGTAGTCACC+AGG + chr4_3:55859378-55859397 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 55859116 55863416 55859116 ID=Msa0649250;Name=Msa0649250
chr4_3 mRNA 55859116 55863416 55859116 ID=Msa0649250-mRNA-1;Parent=Msa0649250;Name=Msa0649250-mRNA-1;_AED=0.05;_eAED=0.06;_QI=109|0.87|0.88|1|1|1|9|290|355
chr4_3 exon 55859116 55859556 55859116 ID=Msa0649250-mRNA-1:exon:14405;Parent=Msa0649250-mRNA-1
chr4_3 exon 55859810 55859878 55859810 ID=Msa0649250-mRNA-1:exon:14404;Parent=Msa0649250-mRNA-1
chr4_3 exon 55860311 55860406 55860311 ID=Msa0649250-mRNA-1:exon:14403;Parent=Msa0649250-mRNA-1
chr4_3 exon 55860705 55860796 55860705 ID=Msa0649250-mRNA-1:exon:14402;Parent=Msa0649250-mRNA-1
chr4_3 exon 55860931 55861011 55860931 ID=Msa0649250-mRNA-1:exon:14401;Parent=Msa0649250-mRNA-1
chr4_3 exon 55861197 55861298 55861197 ID=Msa0649250-mRNA-1:exon:14400;Parent=Msa0649250-mRNA-1
chr4_3 exon 55861540 55861609 55861540 ID=Msa0649250-mRNA-1:exon:14399;Parent=Msa0649250-mRNA-1
chr4_3 exon 55861682 55861776 55861682 ID=Msa0649250-mRNA-1:exon:14398;Parent=Msa0649250-mRNA-1
chr4_3 exon 55862996 55863416 55862996 ID=Msa0649250-mRNA-1:exon:14397;Parent=Msa0649250-mRNA-1
chr4_3 five_prime_UTR 55863308 55863416 55863308 ID=Msa0649250-mRNA-1:five_prime_utr;Parent=Msa0649250-mRNA-1
chr4_3 CDS 55862996 55863307 55862996 ID=Msa0649250-mRNA-1:cds;Parent=Msa0649250-mRNA-1
chr4_3 CDS 55861682 55861776 55861682 ID=Msa0649250-mRNA-1:cds;Parent=Msa0649250-mRNA-1
chr4_3 CDS 55861540 55861609 55861540 ID=Msa0649250-mRNA-1:cds;Parent=Msa0649250-mRNA-1
chr4_3 CDS 55861197 55861298 55861197 ID=Msa0649250-mRNA-1:cds;Parent=Msa0649250-mRNA-1
chr4_3 CDS 55860931 55861011 55860931 ID=Msa0649250-mRNA-1:cds;Parent=Msa0649250-mRNA-1
chr4_3 CDS 55860705 55860796 55860705 ID=Msa0649250-mRNA-1:cds;Parent=Msa0649250-mRNA-1
chr4_3 CDS 55860311 55860406 55860311 ID=Msa0649250-mRNA-1:cds;Parent=Msa0649250-mRNA-1
chr4_3 CDS 55859810 55859878 55859810 ID=Msa0649250-mRNA-1:cds;Parent=Msa0649250-mRNA-1
chr4_3 CDS 55859406 55859556 55859406 ID=Msa0649250-mRNA-1:cds;Parent=Msa0649250-mRNA-1
chr4_3 three_prime_UTR 55859116 55859405 55859116 ID=Msa0649250-mRNA-1:three_prime_utr;Parent=Msa0649250-mRNA-1
Gene Sequence

>Msa0649250

ATGGGAATTATGAACTACTACAATTGTGTAACATGTGCAGCAACACCAATATCACAAGATTCATCATCATCATCATTACCACCAAACCCAAGACAAACAAAGGTTATTCTTCCCAATAAAAAACCCATGAAATGGTCTACTGGTATGGCTCCTGGTGACTACGGTGGTCCTCCAACAACCACCAAGCTTCGTAAGTATTGGGGTGGTGGAGACCCTGACCCTTTAGCTTCTGATGATTATTTGTGGAACAAAGATTTTGTTCCTCATTTTGAAAGGATGATTCAGCCACCTGAACAATCTTCTCCTTCAAAGGAAGTGCCTTCTGGGTTTCTAAGCTTAAATAGAGTCATGAGCCTCGACAGGTCTCGCTCTACAATATTTGTATACAAGTCTTCAAATGCACTTTCTATGGAAGTTGATTTGAGCAAAGAACTCTCAGCTCCTGTTGTACAGCAGCAAATAGAGACACCAATTATGGCGACAGAAAGTGACAGCAAGAGAGTAAGGTGGAGATTAGCACCAACACGCCGTGAGCAAGACAAATGGAATAGAGCCACCAAAGCTGCAACTGACGGCAGTGATGTGCTGTTTCGGGAATTAAGGAAGTCTCGTGAAAATCCCGAAGTATTGGCTGCTCAATACAGGGAGCAGTATATTAAGTTAAAGAAGAGGTTGCAAGCGCTTACATTGGGTATAGGTGGCGTTGGTCTTGTTTCAACTTATGTTTCTTATTCTCCTGAGATTGCAGCTAGCTTTGGTGCCGGCTTTCTTGGTTCTTTGGCGTATATCCGCATGCTGGGAAGTAGCATGGACTCACTAAACCCAAACGGTGCAAGGGCCGCTATCAAGGGAGCAATTGGGCAGCCAAGATTACTGGTTCCTGTTGTATTGGTTATGATTTATAATCGATGGAATGCGATTCTTGTTCCAGAATATGGAATTATGCACTTAGAATTGATACCAATGCTAGTTGGTTTTTTCACATACAAGATTGCAACTTTTGCACAAGCTATAGAGGAGGTGATTACTGTTGCATCAAAGGACCTAAATATATCGACCAAAGACTAA

Protein sequence

>Msa0649250

MGIMNYYNCVTCAATPISQDSSSSSLPPNPRQTKVILPNKKPMKWSTGMAPGDYGGPPTTTKLRKYWGGGDPDPLASDDYLWNKDFVPHFERMIQPPEQSSPSKEVPSGFLSLNRVMSLDRSRSTIFVYKSSNALSMEVDLSKELSAPVVQQQIETPIMATESDSKRVRWRLAPTRREQDKWNRATKAATDGSDVLFRELRKSRENPEVLAAQYREQYIKLKKRLQALTLGIGGVGLVSTYVSYSPEIAASFGAGFLGSLAYIRMLGSSMDSLNPNGARAAIKGAIGQPRLLVPVVLVMIYNRWNAILVPEYGIMHLELIPMLVGFFTYKIATFAQAIEEVITVASKDLNISTKD*