AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0608780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0608780 MtrunA17_Chr4g0041121 95.601 341 14 1 1 340 1 341 0.0 670
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0608780 AT2G31040.1 63.848 343 107 7 1 332 1 337 9.54e-151 428

Find 100 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCGACCAAAGACTAAATT+TGG 0.119809 4_2:+56026808 Msa0608780:exon
AGCTTTGGTGCCGGCTTTCT+TGG 0.168268 4_2:+56025822 Msa0608780:intron
TACACATCTCTTACCATAAT+TGG 0.232454 4_2:-56024682 None:intergenic
GAAACCCCAAATTTAGTCTT+TGG 0.236449 4_2:-56026814 None:intergenic
AGTCTTTGGTCGATATATTT+AGG 0.241504 4_2:-56026800 None:intergenic
TGCCGGCTTTCTTGGTTCTT+TGG 0.245062 4_2:+56025830 Msa0608780:CDS
AGGATTCTTGTTCCAGAATA+TGG 0.258629 4_2:+56026672 Msa0608780:intron
AAGTGCATAATTCCATATTC+TGG 0.258872 4_2:-56026684 None:intergenic
TGTAAACAGGAAGTGCCTTC+TGG 0.265849 4_2:+56024447 Msa0608780:intron
TAAGATAGTGAGAAACAAAA+TGG 0.274507 4_2:+56022902 Msa0608780:exon
CCTACAGGATGTGCTGTTTC+GGG 0.276860 4_2:+56025212 Msa0608780:intron
ATGTGCTGTTTCGGGAATTA+AGG 0.286517 4_2:+56025220 Msa0608780:CDS
ACCTACAGGATGTGCTGTTT+CGG 0.308666 4_2:+56025211 Msa0608780:intron
CACCAAGCTTCGTAAGTATT+GGG 0.317586 4_2:+56023100 Msa0608780:CDS
CATATGAATGGTATATATAT+TGG 0.325606 4_2:-56022810 None:intergenic
AATTGGGCAGCCAAGATTAC+TGG 0.331100 4_2:+56026358 Msa0608780:CDS
ATAGCGGCCCTTGCACCGTT+TGG 0.337199 4_2:-56025894 None:intergenic
CATATCTATCTATAGATTAC+TGG 0.338490 4_2:+56022836 Msa0608780:five_prime_UTR
GCAAATAGAGACACCAATTA+TGG 0.341609 4_2:+56024669 Msa0608780:CDS
TTTCTCACTATCTTATGTTC+TGG 0.353430 4_2:-56022894 None:intergenic
ATCGACCAAAGACTAAATTT+GGG 0.357427 4_2:+56026809 Msa0608780:exon
AGAATAACCTTTGTTTGTCT+TGG 0.372585 4_2:-56023008 None:intergenic
GAATAACCTTTGTTTGTCTT+GGG 0.373162 4_2:-56023007 None:intergenic
ACCTTTGTTTGTCTTGGGTT+TGG 0.377459 4_2:-56023002 None:intergenic
ATTACTGGTTCCTGTTGTAT+TGG 0.379401 4_2:+56026373 Msa0608780:CDS
ACTGCCGTCAGTTGCAGCTT+TGG 0.380147 4_2:-56025011 None:intergenic
ATACAGGGAGCAGTATATTA+AGG 0.383424 4_2:+56025278 Msa0608780:CDS
GTTAATTGCAGGGGAGCAAT+TGG 0.387442 4_2:+56026341 Msa0608780:intron
TAGCGGCCCTTGCACCGTTT+GGG 0.390012 4_2:-56025893 None:intergenic
TATTGAGCAGCCAATACTTC+GGG 0.403419 4_2:-56025258 None:intergenic
GTAAACAGGAAGTGCCTTCT+GGG 0.406227 4_2:+56024448 Msa0608780:intron
TAGCTTCTGATGATTATTTG+TGG 0.407042 4_2:+56023144 Msa0608780:CDS
CCACCAAGCTTCGTAAGTAT+TGG 0.407069 4_2:+56023099 Msa0608780:CDS
TTTGAAGGAGAAGATTGTTC+AGG 0.408297 4_2:-56023209 None:intergenic
TCATCAGAAGCTAAAGGGTC+AGG 0.410342 4_2:-56023134 None:intergenic
AAGTATTGGCTGCTCAATAC+AGG 0.415220 4_2:+56025262 Msa0608780:CDS
TCTATTTGCTGCTGTACAAC+AGG 0.415950 4_2:-56024655 None:intergenic
GCCGTCAGTTGCAGCTTTGG+TGG 0.426140 4_2:-56025008 None:intergenic
CAAGCGCTTACATTGGGTAT+AGG 0.428081 4_2:+56025449 Msa0608780:CDS
TTACGAAGCTTGGTGGTTGT+TGG 0.430101 4_2:-56023092 None:intergenic
CATACCAGTAGACCATTTCA+TGG 0.443885 4_2:-56023045 None:intergenic
ACAACAGGAACCAGTAATCT+TGG 0.444377 4_2:-56026368 None:intergenic
TTTGGCGTATATCCGCATGC+TGG 0.445119 4_2:+56025848 Msa0608780:CDS
CGAAGCTTGGTGGTTGTTGG+AGG 0.451253 4_2:-56023089 None:intergenic
TGGTTATGATTTATAATCGA+TGG 0.453315 4_2:+56026393 Msa0608780:CDS
AAAATGACAGCAAGAGAGTA+AGG 0.457203 4_2:+56024939 Msa0608780:CDS
AATAATCATCAGAAGCTAAA+GGG 0.460622 4_2:-56023139 None:intergenic
ACCTACCTAGCTGCAATCTC+AGG 0.464426 4_2:-56025509 None:intergenic
TGAACAATCTTCTCCTTCAA+AGG 0.475235 4_2:+56023211 Msa0608780:CDS
TAAATCATAACCAATACAAC+AGG 0.476198 4_2:-56026383 None:intergenic
TATTCCATTTGTCTTGCTCA+CGG 0.492378 4_2:-56024982 None:intergenic
AAACCCATGAAATGGTCTAC+TGG 0.495036 4_2:+56023041 Msa0608780:CDS
AAATAATCATCAGAAGCTAA+AGG 0.495271 4_2:-56023140 None:intergenic
ATGTTCTGGTTCCTGTGTTG+TGG 0.495930 4_2:-56022880 None:intergenic
CACGCCGTGAGCAAGACAAA+TGG 0.501285 4_2:+56024978 Msa0608780:CDS
CATGAAATGGTCTACTGGTA+TGG 0.501507 4_2:+56023046 Msa0608780:CDS
TGAATCATCCTTTCAAAATG+AGG 0.504403 4_2:-56023182 None:intergenic
AGGTTGCAAGCGCTTACATT+GGG 0.506487 4_2:+56025443 Msa0608780:CDS
GGTGATTACTGTTGCATCAA+AGG 0.508229 4_2:+56026776 Msa0608780:CDS
CACTAAACCCAAACGGTGCA+AGG 0.509069 4_2:+56025886 Msa0608780:CDS
ACCCCAATACTTACGAAGCT+TGG 0.512109 4_2:-56023102 None:intergenic
TTAATTGCAGGGGAGCAATT+GGG 0.514999 4_2:+56026342 Msa0608780:intron
CCAATACTTACGAAGCTTGG+TGG 0.515865 4_2:-56023099 None:intergenic
TTGGCGTATATCCGCATGCT+GGG 0.516325 4_2:+56025849 Msa0608780:CDS
ATAGATATGATTCATATGAA+TGG 0.516400 4_2:-56022822 None:intergenic
TGGTCTACTGGTATGGCTCC+TGG 0.518814 4_2:+56023053 Msa0608780:CDS
GAATTGATACCAATGCTAGT+TGG 0.520283 4_2:+56026708 Msa0608780:CDS
CTTCGTAAGTATTGGGGTGG+TGG 0.523937 4_2:+56023107 Msa0608780:CDS
AAGATAGTGAGAAACAAAAT+GGG 0.533275 4_2:+56022903 Msa0608780:exon
ATAGAGTCATGAGCCTCGAC+AGG 0.533765 4_2:+56024484 Msa0608780:CDS
TCGTGAAAATCCCGAAGTAT+TGG 0.538551 4_2:+56025248 Msa0608780:CDS
CGCCAAAGAACCAAGAAAGC+CGG 0.543254 4_2:-56025832 None:intergenic
ACATTGGGTATAGGTGGCGT+TGG 0.545773 4_2:+56025458 Msa0608780:CDS
GAGGTTGCAAGCGCTTACAT+TGG 0.551750 4_2:+56025442 Msa0608780:CDS
GTATTGAGCAGCCAATACTT+CGG 0.557898 4_2:-56025259 None:intergenic
GAAGGAGAAGATTGTTCAGG+TGG 0.562283 4_2:-56023206 None:intergenic
GCCACCAAAGCTGCAACTGA+CGG 0.578335 4_2:+56025007 Msa0608780:CDS
CCGCATGCTGGGAAGTAGCA+TGG 0.585601 4_2:+56025860 Msa0608780:CDS
GGAGGACCACCGTAGTCACC+AGG 0.586218 4_2:-56023071 None:intergenic
ATACCAGTAGACCATTTCAT+GGG 0.589861 4_2:-56023044 None:intergenic
TTGTCTTGCTCACGGCGTGT+TGG 0.591493 4_2:-56024974 None:intergenic
GGTATGGCTCCTGGTGACTA+CGG 0.593975 4_2:+56023062 Msa0608780:CDS
GATGATGAATCTTGTGACAT+TGG 0.594108 4_2:-56022966 None:intergenic
CATCAGAAGCTAAAGGGTCA+GGG 0.595141 4_2:-56023133 None:intergenic
AGTATTGGCTGCTCAATACA+GGG 0.596425 4_2:+56025263 Msa0608780:CDS
ATGGACTCACTAAACCCAAA+CGG 0.611635 4_2:+56025879 Msa0608780:CDS
ACCAAACCCAAGACAAACAA+AGG 0.615615 4_2:+56023001 Msa0608780:CDS
ACTAAACCCAAACGGTGCAA+GGG 0.616920 4_2:+56025887 Msa0608780:CDS
TCGACCAAAGACTAAATTTG+GGG 0.617007 4_2:+56026810 Msa0608780:exon
CCATGCTACTTCCCAGCATG+CGG 0.623983 4_2:-56025860 None:intergenic
ATGACAGCAAGAGAGTAAGG+TGG 0.626701 4_2:+56024942 Msa0608780:CDS
GCGCTTACATTGGGTATAGG+TGG 0.629044 4_2:+56025452 Msa0608780:CDS
ATTCTCCTGAGATTGCAGCT+AGG 0.629223 4_2:+56025504 Msa0608780:CDS
AACTATAGATTACTTGATAG+CGG 0.638773 4_2:-56025910 None:intergenic
ACCAAGCTTCGTAAGTATTG+GGG 0.639162 4_2:+56023101 Msa0608780:CDS
TTGTAGAGCGAGACCTGTCG+AGG 0.640320 4_2:-56024497 None:intergenic
TTTAAGCTTAGAAACCCAGA+AGG 0.648797 4_2:-56024462 None:intergenic
AAGCTTCGTAAGTATTGGGG+TGG 0.659164 4_2:+56023104 Msa0608780:CDS
TCAATACATAGCCACAACAC+AGG 0.678048 4_2:+56022869 Msa0608780:five_prime_UTR
ATGGCTCCTGGTGACTACGG+TGG 0.710999 4_2:+56023065 Msa0608780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATACAGAAAATAAATT+GGG - chr4_2:56023738-56023757 None:intergenic 10.0%
!! TTATAATACAGAAAATAAAT+TGG - chr4_2:56023739-56023758 None:intergenic 10.0%
!! AATATCAATATTACTTAAAA+GGG - chr4_2:56023780-56023799 None:intergenic 10.0%
!! AAATATCAATATTACTTAAA+AGG - chr4_2:56023781-56023800 None:intergenic 10.0%
!!! TCAAGAAATTTTAATATAAT+TGG + chr4_2:56024233-56024252 Msa0608780:intron 10.0%
!!! AATATTTTTTTTTTGTAAAC+AGG + chr4_2:56024434-56024453 Msa0608780:intron 10.0%
!! CATTCTTATATATTACATAT+AGG - chr4_2:56023711-56023730 None:intergenic 15.0%
!! GTATTATAATTAGATTTGAT+TGG + chr4_2:56023750-56023769 Msa0608780:intron 15.0%
!! ATTGAAGTAAAAGTAAAATT+TGG - chr4_2:56023839-56023858 None:intergenic 15.0%
!! AAATAGTTATTAAACTCTTT+CGG - chr4_2:56026033-56026052 None:intergenic 15.0%
!! TGTCTATATAAATTTAATGT+AGG + chr4_2:56026155-56026174 Msa0608780:intron 15.0%
!! GTCTATATAAATTTAATGTA+GGG + chr4_2:56026156-56026175 Msa0608780:intron 15.0%
!! AATTACTATTCTATTAATGA+AGG + chr4_2:56026451-56026470 Msa0608780:intron 15.0%
!! TCAAATTTAATATATAAGAG+TGG + chr4_2:56026546-56026565 Msa0608780:intron 15.0%
!! CATATGAATGGTATATATAT+TGG - chr4_2:56022813-56022832 None:intergenic 20.0%
!! ATAGATATGATTCATATGAA+TGG - chr4_2:56022825-56022844 None:intergenic 20.0%
!! AAAAAAGTAAAAACCTTTGA+AGG - chr4_2:56023227-56023246 None:intergenic 20.0%
!! AATTCAGTATTTAGTAGAAA+TGG + chr4_2:56023937-56023956 Msa0608780:intron 20.0%
!! ATGATTATGTGAATTAAATC+TGG - chr4_2:56023980-56023999 None:intergenic 20.0%
!! CAATAGATATAGATATTAAG+AGG - chr4_2:56024068-56024087 None:intergenic 20.0%
!! ATATCTATTGAACACATTTA+TGG + chr4_2:56024078-56024097 Msa0608780:intron 20.0%
!! TATCTATTGAACACATTTAT+GGG + chr4_2:56024079-56024098 Msa0608780:intron 20.0%
!!! TTTTGTTTAATTCCATGAAT+TGG + chr4_2:56024401-56024420 Msa0608780:intron 20.0%
!! GAATTAAATACTAAAGATCA+GGG - chr4_2:56024801-56024820 None:intergenic 20.0%
!! AGAATTAAATACTAAAGATC+AGG - chr4_2:56024802-56024821 None:intergenic 20.0%
!! TAAAAAGATAAATGAACCTT+TGG - chr4_2:56024893-56024912 None:intergenic 20.0%
!! TTACAAATTTAATGTCTATC+AGG + chr4_2:56024910-56024929 Msa0608780:intron 20.0%
!!! GTATCTAGTTTTTTACTTAT+TGG + chr4_2:56025075-56025094 Msa0608780:intron 20.0%
!!! TTAACTTGGTTATTTTGAAT+TGG + chr4_2:56025554-56025573 Msa0608780:intron 20.0%
!!! TTAACCATATTTGATAGTAT+AGG - chr4_2:56025591-56025610 None:intergenic 20.0%
!!! TACCTCTAAAGAATTTTTTA+AGG + chr4_2:56025756-56025775 Msa0608780:intron 20.0%
!! AACCTTAAAAAATTCTTTAG+AGG - chr4_2:56025761-56025780 None:intergenic 20.0%
!! TATATTATGGTAAAATATGC+TGG + chr4_2:56026130-56026149 Msa0608780:intron 20.0%
!! ATATTATGGTAAAATATGCT+GGG + chr4_2:56026131-56026150 Msa0608780:intron 20.0%
!! GTAACTCAGATTTAATAAAT+AGG + chr4_2:56026501-56026520 Msa0608780:intron 20.0%
! CATATCTATCTATAGATTAC+TGG + chr4_2:56022836-56022855 Msa0608780:five_prime_UTR 25.0%
! TAAGATAGTGAGAAACAAAA+TGG + chr4_2:56022902-56022921 Msa0608780:exon 25.0%
! AAGATAGTGAGAAACAAAAT+GGG + chr4_2:56022903-56022922 Msa0608780:exon 25.0%
!!! CATTTCATGGGTTTTTTATT+GGG - chr4_2:56023035-56023054 None:intergenic 25.0%
! AATAATCATCAGAAGCTAAA+GGG - chr4_2:56023142-56023161 None:intergenic 25.0%
! AAATAATCATCAGAAGCTAA+AGG - chr4_2:56023143-56023162 None:intergenic 25.0%
!! ATTTTGTTCCTCATTTTGAA+AGG + chr4_2:56023174-56023193 Msa0608780:CDS 25.0%
!! ACATTCTATAATTTTCCATC+TGG + chr4_2:56023251-56023270 Msa0608780:intron 25.0%
!! CATTCTATAATTTTCCATCT+GGG + chr4_2:56023252-56023271 Msa0608780:intron 25.0%
!!! CTGTTTTGTTGGAATTATTA+TGG + chr4_2:56023291-56023310 Msa0608780:intron 25.0%
!! TGTTACTTGATTATTGTGTT+TGG + chr4_2:56023506-56023525 Msa0608780:intron 25.0%
!! ATATTGATATTTGAGACCAT+TGG + chr4_2:56023789-56023808 Msa0608780:intron 25.0%
!! ATTCATTCCAATTTTCAGAT+AGG + chr4_2:56024147-56024166 Msa0608780:intron 25.0%
! GAATGATACTAAACAATAGA+TGG + chr4_2:56024175-56024194 Msa0608780:intron 25.0%
! TAAAATTTCTTGAGTCAACA+AGG - chr4_2:56024226-56024245 None:intergenic 25.0%
!!! GCTATCGATTATTTTTTTGA+AGG + chr4_2:56024364-56024383 Msa0608780:intron 25.0%
!!! TCGATTATTTTTTTGAAGGA+AGG + chr4_2:56024368-56024387 Msa0608780:intron 25.0%
! TTGATTTATGAACTGTAGTA+TGG + chr4_2:56024603-56024622 Msa0608780:intron 25.0%
! TTCATGAGTATTTAATTCAG+AGG + chr4_2:56024745-56024764 Msa0608780:intron 25.0%
! TCATGAGTATTTAATTCAGA+GGG + chr4_2:56024746-56024765 Msa0608780:intron 25.0%
!! TGAAAAACAAAAAAAGCACA+TGG + chr4_2:56024850-56024869 Msa0608780:intron 25.0%
! CTTATATAAGTGTATAACCT+AGG + chr4_2:56025111-56025130 Msa0608780:intron 25.0%
!! TTTGGGTTAAAAGTAAACTA+TGG - chr4_2:56025161-56025180 None:intergenic 25.0%
!! AATCGTCAAGTTATCATTTT+GGG - chr4_2:56025178-56025197 None:intergenic 25.0%
! TTCTGTTCCTAAACTTAATT+TGG + chr4_2:56025403-56025422 Msa0608780:intron 25.0%
! TGAAAAGCCAAATTAAGTTT+AGG - chr4_2:56025413-56025432 None:intergenic 25.0%
! AACTATAGATTACTTGATAG+CGG - chr4_2:56025913-56025932 None:intergenic 25.0%
! ATATTATTCAAGATGTGAAC+AGG + chr4_2:56026101-56026120 Msa0608780:intron 25.0%
! TATTATTCAAGATGTGAACA+GGG + chr4_2:56026102-56026121 Msa0608780:intron 25.0%
! TATTATGGTAAAATATGCTG+GGG + chr4_2:56026132-56026151 Msa0608780:intron 25.0%
! GAAAAATGAAACAATGTTCA+TGG - chr4_2:56026275-56026294 None:intergenic 25.0%
! TAAATCATAACCAATACAAC+AGG - chr4_2:56026386-56026405 None:intergenic 25.0%
! TGGTTATGATTTATAATCGA+TGG + chr4_2:56026393-56026412 Msa0608780:CDS 25.0%
! ATAGGAATGAGAATTAAGAA+TGG + chr4_2:56026519-56026538 Msa0608780:intron 25.0%
!! TTAACCAATATTCTAGGTTT+TGG - chr4_2:56026613-56026632 None:intergenic 25.0%
TTTCTCACTATCTTATGTTC+TGG - chr4_2:56022897-56022916 None:intergenic 30.0%
! GAATAACCTTTGTTTGTCTT+GGG - chr4_2:56023010-56023029 None:intergenic 30.0%
! AGAATAACCTTTGTTTGTCT+TGG - chr4_2:56023011-56023030 None:intergenic 30.0%
!!! CCATTTCATGGGTTTTTTAT+TGG - chr4_2:56023036-56023055 None:intergenic 30.0%
CCAATAAAAAACCCATGAAA+TGG + chr4_2:56023033-56023052 Msa0608780:CDS 30.0%
TAGCTTCTGATGATTATTTG+TGG + chr4_2:56023144-56023163 Msa0608780:CDS 30.0%
TGAATCATCCTTTCAAAATG+AGG - chr4_2:56023185-56023204 None:intergenic 30.0%
ATTGATTGATGAATTGCTTG+TGG + chr4_2:56023330-56023349 Msa0608780:intron 30.0%
TTGATTGATGAATTGCTTGT+GGG + chr4_2:56023331-56023350 Msa0608780:intron 30.0%
ATGATGATTGTGTATGTACA+CGG + chr4_2:56023376-56023395 Msa0608780:intron 30.0%
! ATTTTACTCCTTTGTTCCAA+TGG - chr4_2:56023808-56023827 None:intergenic 30.0%
AAGAAAGACTAATAAACGCA+TGG - chr4_2:56023878-56023897 None:intergenic 30.0%
TTACATAATGATACTCTGTG+AGG + chr4_2:56023897-56023916 Msa0608780:intron 30.0%
!! AGATATTAAGAGGCATTTGA+TGG - chr4_2:56024058-56024077 None:intergenic 30.0%
! AACAGTTACTTTGTTTAGCA+TGG + chr4_2:56024119-56024138 Msa0608780:intron 30.0%
TCTGATTCCTATCTGAAAAT+TGG - chr4_2:56024157-56024176 None:intergenic 30.0%
! TGGTTTTTGATAGAACATCA+TGG + chr4_2:56024253-56024272 Msa0608780:intron 30.0%
TTTATGTCAGTACCAATTCA+TGG - chr4_2:56024416-56024435 None:intergenic 30.0%
TACACATCTCTTACCATAAT+TGG - chr4_2:56024685-56024704 None:intergenic 30.0%
!!! TTGTTGTGTTGTTTTTCCAA+AGG + chr4_2:56024874-56024893 Msa0608780:intron 30.0%
TATAAGTGTATAACCTAGGA+CGG + chr4_2:56025115-56025134 Msa0608780:intron 30.0%
! CAATCGTCAAGTTATCATTT+TGG - chr4_2:56025179-56025198 None:intergenic 30.0%
TGTTGATATTAACTACCTAC+AGG + chr4_2:56025197-56025216 Msa0608780:intron 30.0%
! TCTTCTACTACTGATTAACT+TGG + chr4_2:56025540-56025559 Msa0608780:intron 30.0%
ATTTATCCAATATCCCTCAA+TGG - chr4_2:56025665-56025684 None:intergenic 30.0%
! TTCTTTCATGTTTTCAGCTT+TGG + chr4_2:56025807-56025826 Msa0608780:intron 30.0%
GAACAGGGAGAAATATATTA+TGG + chr4_2:56026117-56026136 Msa0608780:intron 30.0%
TTCTCCAAAACCTAGAATAT+TGG + chr4_2:56026606-56026625 Msa0608780:intron 30.0%
! CCTAGAATATTGGTTAAACT+CGG + chr4_2:56026616-56026635 Msa0608780:intron 30.0%
AAGTGCATAATTCCATATTC+TGG - chr4_2:56026687-56026706 None:intergenic 30.0%
AGTCTTTGGTCGATATATTT+AGG - chr4_2:56026803-56026822 None:intergenic 30.0%
TATCGACCAAAGACTAAATT+TGG + chr4_2:56026808-56026827 Msa0608780:exon 30.0%
ATCGACCAAAGACTAAATTT+GGG + chr4_2:56026809-56026828 Msa0608780:exon 30.0%
GATGATGAATCTTGTGACAT+TGG - chr4_2:56022969-56022988 None:intergenic 35.0%
ATACCAGTAGACCATTTCAT+GGG - chr4_2:56023047-56023066 None:intergenic 35.0%
TTTGAAGGAGAAGATTGTTC+AGG - chr4_2:56023212-56023231 None:intergenic 35.0%
TGAACAATCTTCTCCTTCAA+AGG + chr4_2:56023211-56023230 Msa0608780:CDS 35.0%
!!! TTGAATTGGTGCTGTTTTGT+TGG + chr4_2:56023280-56023299 Msa0608780:intron 35.0%
GAAAGGGATTAGGATTAAGT+TGG - chr4_2:56023614-56023633 None:intergenic 35.0%
TTGTTACGTTAGGCTTGAAA+GGG - chr4_2:56023630-56023649 None:intergenic 35.0%
! ATTTGAGACCATTGGAACAA+AGG + chr4_2:56023797-56023816 Msa0608780:intron 35.0%
TAATGATACTCTGTGAGGAA+AGG + chr4_2:56023902-56023921 Msa0608780:intron 35.0%
ATTGAACACATTTATGGGTG+TGG + chr4_2:56024084-56024103 Msa0608780:intron 35.0%
TTTATGGGTGTGGAAATGTA+TGG + chr4_2:56024094-56024113 Msa0608780:intron 35.0%
! CAACATTTTTGTCACAATGC+GGG - chr4_2:56024303-56024322 None:intergenic 35.0%
! CCAACATTTTTGTCACAATG+CGG - chr4_2:56024304-56024323 None:intergenic 35.0%
ACTCAAGATATCTTGGTGAA+TGG + chr4_2:56024342-56024361 Msa0608780:intron 35.0%
TTTAAGCTTAGAAACCCAGA+AGG - chr4_2:56024465-56024484 None:intergenic 35.0%
GCAAATAGAGACACCAATTA+TGG + chr4_2:56024669-56024688 Msa0608780:CDS 35.0%
AAAATGACAGCAAGAGAGTA+AGG + chr4_2:56024939-56024958 Msa0608780:CDS 35.0%
TATTCCATTTGTCTTGCTCA+CGG - chr4_2:56024985-56025004 None:intergenic 35.0%
ATACAGGGAGCAGTATATTA+AGG + chr4_2:56025278-56025297 Msa0608780:CDS 35.0%
! TGGCTTTTCAGTTAAAGAAG+AGG + chr4_2:56025423-56025442 Msa0608780:intron 35.0%
! TATTTGATAGTATAGGCAGC+AGG - chr4_2:56025584-56025603 None:intergenic 35.0%
GCTGCCTATACTATCAAATA+TGG + chr4_2:56025584-56025603 Msa0608780:intron 35.0%
ATGTTTCCATTGAGGGATAT+TGG + chr4_2:56025656-56025675 Msa0608780:intron 35.0%
!! TCATTTTTCACGTTGTTCGT+TGG + chr4_2:56026286-56026305 Msa0608780:intron 35.0%
AACTTGTGGATGTTAATTGC+AGG + chr4_2:56026330-56026349 Msa0608780:intron 35.0%
ACTTGTGGATGTTAATTGCA+GGG + chr4_2:56026331-56026350 Msa0608780:intron 35.0%
!! ATTACTGGTTCCTGTTGTAT+TGG + chr4_2:56026373-56026392 Msa0608780:CDS 35.0%
GAGTGAATGAGAGTTAAGAA+TGG + chr4_2:56026479-56026498 Msa0608780:intron 35.0%
!!! GTTTTGGAGAAACTAAAGCT+AGG - chr4_2:56026597-56026616 None:intergenic 35.0%
CCGAGTTTAACCAATATTCT+AGG - chr4_2:56026619-56026638 None:intergenic 35.0%
!!! GGTGTTTTAACTGCTTAACA+AGG + chr4_2:56026637-56026656 Msa0608780:intron 35.0%
AGGATTCTTGTTCCAGAATA+TGG + chr4_2:56026672-56026691 Msa0608780:intron 35.0%
GAATTGATACCAATGCTAGT+TGG + chr4_2:56026708-56026727 Msa0608780:CDS 35.0%
GTGAAAAAACCAACTAGCAT+TGG - chr4_2:56026720-56026739 None:intergenic 35.0%
! AACTTTTGCACAAGCTATAG+AGG + chr4_2:56026752-56026771 Msa0608780:CDS 35.0%
TCGACCAAAGACTAAATTTG+GGG + chr4_2:56026810-56026829 Msa0608780:exon 35.0%
! GAAACCCCAAATTTAGTCTT+TGG - chr4_2:56026817-56026836 None:intergenic 35.0%
TCAATACATAGCCACAACAC+AGG + chr4_2:56022869-56022888 Msa0608780:five_prime_UTR 40.0%
ACCAAACCCAAGACAAACAA+AGG + chr4_2:56023001-56023020 Msa0608780:CDS 40.0%
! ACCTTTGTTTGTCTTGGGTT+TGG - chr4_2:56023005-56023024 None:intergenic 40.0%
AAACCCATGAAATGGTCTAC+TGG + chr4_2:56023041-56023060 Msa0608780:CDS 40.0%
CATACCAGTAGACCATTTCA+TGG - chr4_2:56023048-56023067 None:intergenic 40.0%
CATGAAATGGTCTACTGGTA+TGG + chr4_2:56023046-56023065 Msa0608780:CDS 40.0%
CACCAAGCTTCGTAAGTATT+GGG + chr4_2:56023100-56023119 Msa0608780:CDS 40.0%
! ACCAAGCTTCGTAAGTATTG+GGG + chr4_2:56023101-56023120 Msa0608780:CDS 40.0%
CTTGTTACGTTAGGCTTGAA+AGG - chr4_2:56023631-56023650 None:intergenic 40.0%
! ATCTCAGTGCTTGTTACGTT+AGG - chr4_2:56023640-56023659 None:intergenic 40.0%
! TTTTTGTCACAATGCGGGTT+TGG - chr4_2:56024298-56024317 None:intergenic 40.0%
CCGCATTGTGACAAAAATGT+TGG + chr4_2:56024301-56024320 Msa0608780:intron 40.0%
! GTGACAAAAATGTTGGTTGC+TGG + chr4_2:56024308-56024327 Msa0608780:intron 40.0%
! AAAATGTTGGTTGCTGGTAG+TGG + chr4_2:56024314-56024333 Msa0608780:intron 40.0%
! TCTATTTGCTGCTGTACAAC+AGG - chr4_2:56024658-56024677 None:intergenic 40.0%
!! ATGTGCTGTTTCGGGAATTA+AGG + chr4_2:56025220-56025239 Msa0608780:CDS 40.0%
TCGTGAAAATCCCGAAGTAT+TGG + chr4_2:56025248-56025267 Msa0608780:CDS 40.0%
TATTGAGCAGCCAATACTTC+GGG - chr4_2:56025261-56025280 None:intergenic 40.0%
GTATTGAGCAGCCAATACTT+CGG - chr4_2:56025262-56025281 None:intergenic 40.0%
!! AAGTATTGGCTGCTCAATAC+AGG + chr4_2:56025262-56025281 Msa0608780:CDS 40.0%
!! AGTATTGGCTGCTCAATACA+GGG + chr4_2:56025263-56025282 Msa0608780:CDS 40.0%
AGGTACTCAACATTGTTGTC+TGG + chr4_2:56025298-56025317 Msa0608780:intron 40.0%
ACTCAACATTGTTGTCTGGT+TGG + chr4_2:56025302-56025321 Msa0608780:intron 40.0%
CAATGTCGCGATGAATGAAA+AGG - chr4_2:56025361-56025380 None:intergenic 40.0%
TCAGTGTCATGTTTCCATTG+AGG + chr4_2:56025648-56025667 Msa0608780:intron 40.0%
CAGTGTCATGTTTCCATTGA+GGG + chr4_2:56025649-56025668 Msa0608780:intron 40.0%
ATGGACTCACTAAACCCAAA+CGG + chr4_2:56025879-56025898 Msa0608780:CDS 40.0%
CACATGTGAGAACACTTGTT+AGG + chr4_2:56026223-56026242 Msa0608780:intron 40.0%
TTCGTTGGCATAGATAACAG+AGG + chr4_2:56026301-56026320 Msa0608780:intron 40.0%
AACAGAGGCTTAACAACTTG+TGG + chr4_2:56026316-56026335 Msa0608780:intron 40.0%
CTTGTGGATGTTAATTGCAG+GGG + chr4_2:56026332-56026351 Msa0608780:intron 40.0%
TTAATTGCAGGGGAGCAATT+GGG + chr4_2:56026342-56026361 Msa0608780:intron 40.0%
ACAACAGGAACCAGTAATCT+TGG - chr4_2:56026371-56026390 None:intergenic 40.0%
! GTCCTCTTTTGATATGCGAT+TGG + chr4_2:56026425-56026444 Msa0608780:intron 40.0%
CTCCAATCGCATATCAAAAG+AGG - chr4_2:56026430-56026449 None:intergenic 40.0%
! TAACAAGGCTGTTTCAATGC+AGG + chr4_2:56026652-56026671 Msa0608780:intron 40.0%
! TTTTGCACAAGCTATAGAGG+AGG + chr4_2:56026755-56026774 Msa0608780:CDS 40.0%
GGTGATTACTGTTGCATCAA+AGG + chr4_2:56026776-56026795 Msa0608780:CDS 40.0%
!! ATGTTCTGGTTCCTGTGTTG+TGG - chr4_2:56022883-56022902 None:intergenic 45.0%
! TTACGAAGCTTGGTGGTTGT+TGG - chr4_2:56023095-56023114 None:intergenic 45.0%
CCAATACTTACGAAGCTTGG+TGG - chr4_2:56023102-56023121 None:intergenic 45.0%
CCACCAAGCTTCGTAAGTAT+TGG + chr4_2:56023099-56023118 Msa0608780:CDS 45.0%
ACCCCAATACTTACGAAGCT+TGG - chr4_2:56023105-56023124 None:intergenic 45.0%
!! AAGCTTCGTAAGTATTGGGG+TGG + chr4_2:56023104-56023123 Msa0608780:CDS 45.0%
CATCAGAAGCTAAAGGGTCA+GGG - chr4_2:56023136-56023155 None:intergenic 45.0%
TCATCAGAAGCTAAAGGGTC+AGG - chr4_2:56023137-56023156 None:intergenic 45.0%
GAAGGAGAAGATTGTTCAGG+TGG - chr4_2:56023209-56023228 None:intergenic 45.0%
CCAATTCAAACACACCCAGA+TGG - chr4_2:56023269-56023288 None:intergenic 45.0%
CCATCTGGGTGTGTTTGAAT+TGG + chr4_2:56023266-56023285 Msa0608780:intron 45.0%
!! CACTTTCGATCAGAAGTGTC+AGG + chr4_2:56023469-56023488 Msa0608780:intron 45.0%
CGTTAGGCTTGAAAGGGATT+AGG - chr4_2:56023624-56023643 None:intergenic 45.0%
! ACAATGCGGGTTTGGTTCAA+TGG - chr4_2:56024290-56024309 None:intergenic 45.0%
GGTGGTGACTCAAGATATCT+TGG + chr4_2:56024335-56024354 Msa0608780:intron 45.0%
!! TGTAAACAGGAAGTGCCTTC+TGG + chr4_2:56024447-56024466 Msa0608780:intron 45.0%
!! GTAAACAGGAAGTGCCTTCT+GGG + chr4_2:56024448-56024467 Msa0608780:intron 45.0%
ATGACAGCAAGAGAGTAAGG+TGG + chr4_2:56024942-56024961 Msa0608780:CDS 45.0%
!! ACCTACAGGATGTGCTGTTT+CGG + chr4_2:56025211-56025230 Msa0608780:intron 45.0%
AGGTTGCAAGCGCTTACATT+GGG + chr4_2:56025443-56025462 Msa0608780:CDS 45.0%
CAAGCGCTTACATTGGGTAT+AGG + chr4_2:56025449-56025468 Msa0608780:CDS 45.0%
ATTCTCCTGAGATTGCAGCT+AGG + chr4_2:56025504-56025523 Msa0608780:CDS 45.0%
!! CATGTTTTCAGCTTTGGTGC+CGG + chr4_2:56025813-56025832 Msa0608780:intron 45.0%
ACTAAACCCAAACGGTGCAA+GGG + chr4_2:56025887-56025906 Msa0608780:CDS 45.0%
GTTAATTGCAGGGGAGCAAT+TGG + chr4_2:56026341-56026360 Msa0608780:intron 45.0%
AATTGGGCAGCCAAGATTAC+TGG + chr4_2:56026358-56026377 Msa0608780:CDS 45.0%
!! TCAAAAATATATATTAATAA+GGG - chr4_2:56024724-56024743 None:intergenic 5.0%
!! ATCAAAAATATATATTAATA+AGG - chr4_2:56024725-56024744 None:intergenic 5.0%
!! CTTCGTAAGTATTGGGGTGG+TGG + chr4_2:56023107-56023126 Msa0608780:CDS 50.0%
!! ATGTTGGTTGCTGGTAGTGG+TGG + chr4_2:56024317-56024336 Msa0608780:intron 50.0%
ATAGAGTCATGAGCCTCGAC+AGG + chr4_2:56024484-56024503 Msa0608780:CDS 50.0%
TGTATAACCTAGGACGGCGT+AGG + chr4_2:56025121-56025140 Msa0608780:intron 50.0%
!! CCTACAGGATGTGCTGTTTC+GGG + chr4_2:56025212-56025231 Msa0608780:intron 50.0%
GAGGTTGCAAGCGCTTACAT+TGG + chr4_2:56025442-56025461 Msa0608780:CDS 50.0%
GCGCTTACATTGGGTATAGG+TGG + chr4_2:56025452-56025471 Msa0608780:CDS 50.0%
ACATTGGGTATAGGTGGCGT+TGG + chr4_2:56025458-56025477 Msa0608780:CDS 50.0%
TCCTGAGATTGCAGCTAGGT+AGG + chr4_2:56025508-56025527 Msa0608780:intron 50.0%
ACCTACCTAGCTGCAATCTC+AGG - chr4_2:56025512-56025531 None:intergenic 50.0%
!! TGCCGGCTTTCTTGGTTCTT+TGG + chr4_2:56025830-56025849 Msa0608780:CDS 50.0%
CGCCAAAGAACCAAGAAAGC+CGG - chr4_2:56025835-56025854 None:intergenic 50.0%
TTTGGCGTATATCCGCATGC+TGG + chr4_2:56025848-56025867 Msa0608780:CDS 50.0%
TTGGCGTATATCCGCATGCT+GGG + chr4_2:56025849-56025868 Msa0608780:CDS 50.0%
CACTAAACCCAAACGGTGCA+AGG + chr4_2:56025886-56025905 Msa0608780:CDS 50.0%
TGGTCTACTGGTATGGCTCC+TGG + chr4_2:56023053-56023072 Msa0608780:CDS 55.0%
GGTATGGCTCCTGGTGACTA+CGG + chr4_2:56023062-56023081 Msa0608780:CDS 55.0%
! CGAAGCTTGGTGGTTGTTGG+AGG - chr4_2:56023092-56023111 None:intergenic 55.0%
TTGTAGAGCGAGACCTGTCG+AGG - chr4_2:56024500-56024519 None:intergenic 55.0%
TTGTCTTGCTCACGGCGTGT+TGG - chr4_2:56024977-56024996 None:intergenic 55.0%
CACGCCGTGAGCAAGACAAA+TGG + chr4_2:56024978-56024997 Msa0608780:CDS 55.0%
GCCACCAAAGCTGCAACTGA+CGG + chr4_2:56025007-56025026 Msa0608780:CDS 55.0%
ACTGCCGTCAGTTGCAGCTT+TGG - chr4_2:56025014-56025033 None:intergenic 55.0%
TCTATGTCCTACGCCGTCCT+AGG - chr4_2:56025131-56025150 None:intergenic 55.0%
CCCGAAACAGCACATCCTGT+AGG - chr4_2:56025215-56025234 None:intergenic 55.0%
!! AGCTTTGGTGCCGGCTTTCT+TGG + chr4_2:56025822-56025841 Msa0608780:intron 55.0%
! CCATGCTACTTCCCAGCATG+CGG - chr4_2:56025863-56025882 None:intergenic 55.0%
ATGGCTCCTGGTGACTACGG+TGG + chr4_2:56023065-56023084 Msa0608780:CDS 60.0%
! GCCGTCAGTTGCAGCTTTGG+TGG - chr4_2:56025011-56025030 None:intergenic 60.0%
CCGCATGCTGGGAAGTAGCA+TGG + chr4_2:56025860-56025879 Msa0608780:CDS 60.0%
TAGCGGCCCTTGCACCGTTT+GGG - chr4_2:56025896-56025915 None:intergenic 60.0%
ATAGCGGCCCTTGCACCGTT+TGG - chr4_2:56025897-56025916 None:intergenic 60.0%
GGAGGACCACCGTAGTCACC+AGG - chr4_2:56023074-56023093 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 56022808 56027114 56022808 ID=Msa0608780;Name=Msa0608780
chr4_2 mRNA 56022808 56027114 56022808 ID=Msa0608780-mRNA-1;Parent=Msa0608780;Name=Msa0608780-mRNA-1;_AED=0.03;_eAED=0.03;_QI=113|1|1|1|1|1|9|290|340
chr4_2 exon 56022808 56023232 56022808 ID=Msa0608780-mRNA-1:exon:14359;Parent=Msa0608780-mRNA-1
chr4_2 exon 56024456 56024505 56024456 ID=Msa0608780-mRNA-1:exon:14360;Parent=Msa0608780-mRNA-1
chr4_2 exon 56024621 56024690 56024621 ID=Msa0608780-mRNA-1:exon:14361;Parent=Msa0608780-mRNA-1
chr4_2 exon 56024932 56025033 56024932 ID=Msa0608780-mRNA-1:exon:14362;Parent=Msa0608780-mRNA-1
chr4_2 exon 56025219 56025299 56025219 ID=Msa0608780-mRNA-1:exon:14363;Parent=Msa0608780-mRNA-1
chr4_2 exon 56025434 56025525 56025434 ID=Msa0608780-mRNA-1:exon:14364;Parent=Msa0608780-mRNA-1
chr4_2 exon 56025824 56025919 56025824 ID=Msa0608780-mRNA-1:exon:14365;Parent=Msa0608780-mRNA-1
chr4_2 exon 56026352 56026420 56026352 ID=Msa0608780-mRNA-1:exon:14366;Parent=Msa0608780-mRNA-1
chr4_2 exon 56026674 56027114 56026674 ID=Msa0608780-mRNA-1:exon:14367;Parent=Msa0608780-mRNA-1
chr4_2 five_prime_UTR 56022808 56022920 56022808 ID=Msa0608780-mRNA-1:five_prime_utr;Parent=Msa0608780-mRNA-1
chr4_2 CDS 56022921 56023232 56022921 ID=Msa0608780-mRNA-1:cds;Parent=Msa0608780-mRNA-1
chr4_2 CDS 56024456 56024505 56024456 ID=Msa0608780-mRNA-1:cds;Parent=Msa0608780-mRNA-1
chr4_2 CDS 56024621 56024690 56024621 ID=Msa0608780-mRNA-1:cds;Parent=Msa0608780-mRNA-1
chr4_2 CDS 56024932 56025033 56024932 ID=Msa0608780-mRNA-1:cds;Parent=Msa0608780-mRNA-1
chr4_2 CDS 56025219 56025299 56025219 ID=Msa0608780-mRNA-1:cds;Parent=Msa0608780-mRNA-1
chr4_2 CDS 56025434 56025525 56025434 ID=Msa0608780-mRNA-1:cds;Parent=Msa0608780-mRNA-1
chr4_2 CDS 56025824 56025919 56025824 ID=Msa0608780-mRNA-1:cds;Parent=Msa0608780-mRNA-1
chr4_2 CDS 56026352 56026420 56026352 ID=Msa0608780-mRNA-1:cds;Parent=Msa0608780-mRNA-1
chr4_2 CDS 56026674 56026824 56026674 ID=Msa0608780-mRNA-1:cds;Parent=Msa0608780-mRNA-1
chr4_2 three_prime_UTR 56026825 56027114 56026825 ID=Msa0608780-mRNA-1:three_prime_utr;Parent=Msa0608780-mRNA-1
Gene Sequence

>Msa0608780

ATGGGAATTATGAACTACTACAATTGTGTAACATGTGCAGCAACACCAATGTCACAAGATTCATCATCATCATCATTAGCACCAAACCCAAGACAAACAAAGGTTATTCTTCCCAATAAAAAACCCATGAAATGGTCTACTGGTATGGCTCCTGGTGACTACGGTGGTCCTCCAACAACCACCAAGCTTCGTAAGTATTGGGGTGGTGGAGACCCTGACCCTTTAGCTTCTGATGATTATTTGTGGAACAAAGATTTTGTTCCTCATTTTGAAAGGATGATTCAGCCACCTGAACAATCTTCTCCTTCAAAGGAAGTGCCTTCTGGGTTTCTAAGCTTAAATAGAGTCATGAGCCTCGACAGTATGGAAGTTGATTTGAGCAAAGAACTCTCAGCTCCTGTTGTACAGCAGCAAATAGAGACACCAATTATGGCGACAGAAAATGACAGCAAGAGAGTAAGGTGGAGATTAGCACCAACACGCCGTGAGCAAGACAAATGGAATAGAGCCACCAAAGCTGCAACTGACGGCAGTGATGTGCTGTTTCGGGAATTAAGGAAGTCTCGTGAAAATCCCGAAGTATTGGCTGCTCAATACAGGGAGCAGTATATTAAGTTAAAGAAGAGGTTGCAAGCGCTTACATTGGGTATAGGTGGCGTTGGTCTTGTTTCAACTTATGTTTCTTATTCTCCTGAGATTGCAGCTAGCTTTGGTGCCGGCTTTCTTGGTTCTTTGGCGTATATCCGCATGCTGGGAAGTAGCATGGACTCACTAAACCCAAACGGTGCAAGGGCCGCTATCAAGGGAGCAATTGGGCAGCCAAGATTACTGGTTCCTGTTGTATTGGTTATGATTTATAATCGATGGAATGCGATTCTTGTTCCAGAATATGGAATTATGCACTTAGAATTGATACCAATGCTAGTTGGTTTTTTCACATACAAGATTGCAACTTTTGCACAAGCTATAGAGGAGGTGATTACTGTTGCATCAAAGGACCTAAATATATCGACCAAAGACTAA

Protein sequence

>Msa0608780

MGIMNYYNCVTCAATPMSQDSSSSSLAPNPRQTKVILPNKKPMKWSTGMAPGDYGGPPTTTKLRKYWGGGDPDPLASDDYLWNKDFVPHFERMIQPPEQSSPSKEVPSGFLSLNRVMSLDSMEVDLSKELSAPVVQQQIETPIMATENDSKRVRWRLAPTRREQDKWNRATKAATDGSDVLFRELRKSRENPEVLAAQYREQYIKLKKRLQALTLGIGGVGLVSTYVSYSPEIAASFGAGFLGSLAYIRMLGSSMDSLNPNGARAAIKGAIGQPRLLVPVVLVMIYNRWNAILVPEYGIMHLELIPMLVGFFTYKIATFAQAIEEVITVASKDLNISTKD*