AlfalfaGEDB | Msa0473390

M. sativa cultivar zhongmu-4 / Msa0473390

KEGG: K02934
GO: GO:0000027 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0012505 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF03868.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0473390	XP_003602457.1	98.283	233	4	0	1	233	1	233	4.60e-163	460

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0473390	sp\|P34091\|RL6_MESCR	79.741	232	47	0	2	233	3	234	8.94e-126	358

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0473390	G7J9R6	98.283	233	4	0	1	233	1	233	2.19e-163	460

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001760	Msa0473390	0.824268	8.849868e-54	-8.615850e-47
Msa0021290	Msa0473390	0.816336	5.828658e-52	-8.615850e-47
Msa0021320	Msa0473390	0.803193	3.917092e-49	-8.615850e-47
Msa0027590	Msa0473390	0.808430	3.108807e-50	-8.615850e-47
Msa0132460	Msa0473390	0.841282	5.222972e-58	-8.615850e-47
Msa0167860	Msa0473390	0.800085	1.700342e-48	-8.615850e-47
Msa0182050	Msa0473390	0.839376	1.643969e-57	-8.615850e-47
Msa0182100	Msa0473390	0.807739	4.363297e-50	-8.615850e-47
Msa0313060	Msa0473390	0.807444	5.039451e-50	-8.615850e-47
Msa0315430	Msa0473390	0.823622	1.254497e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0473390	MtrunA17_Chr3g0129031	98.283	233	4	0	1	233	1	233	4.23e-167	460
Msa0473390	MtrunA17_Chr3g0129231	98.283	233	4	0	1	233	1	233	9.11e-167	459
Msa0473390	MtrunA17_Chr5g0448021	85.043	234	34	1	1	233	1	234	7.53e-142	396
Msa0473390	MtrunA17_Chr8g0383131	86.391	169	22	1	1	168	1	169	1.33e-101	293

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0473390	AT1G74060.1	79.828	233	47	1	233	1	233	6.39e-121	343
Msa0473390	AT1G74050.1	79.828	233	47	1	233	1	233	1.32e-120	343
Msa0473390	AT1G18540.1	78.112	233	51	1	233	1	233	8.52e-114	325

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Find 83 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCATTGTCTTCAACTA+GGG	0.425787	3_3:+75998775	Msa0473390:five_prime_UTR
AACCGAAGAAATATCTACTT+TGG	0.446745	3_3:-76001626	None:intergenic
AACCTGAGCTTAGTGGGTTT+TGG	0.276883	3_3:-75999093	None:intergenic
AACTTAGGCGGCTTCTCGGC+CGG	0.480002	3_3:-75999024	None:intergenic
ACAGTGTTGATTCTTCTTGC+TGG	0.383364	3_3:+75999855	Msa0473390:CDS
ACCTGCCTTCAAGGAAAACC+TGG	0.516282	3_3:-76001924	None:intergenic
ACGTGGTCTCTGGGCAATCA+AGG	0.510085	3_3:+75998948	Msa0473390:CDS
ACTAGGGTTTAGGTTTAGAC+AGG	0.445812	3_3:+75998791	Msa0473390:five_prime_UTR
AGAAGAATCAACACTGTCCC+TGG	0.473766	3_3:-75999849	None:intergenic
AGCCAAAACCCACTAAGCTC+AGG	0.582122	3_3:+75999091	Msa0473390:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAACAGATCCAAAATAAACG+TGG	-	chr3_3:75999177-75999196	None:intergenic	30.0%
AATCACAATAACTCCACAAA+GGG	-	chr3_3:75999262-75999281	None:intergenic	30.0%
TGATGACTGAGTTAATATAG+TGG	+	chr3_3:75999443-75999462	Msa0473390:intron	30.0%
TAGAAACTGTTGATATTGGT+AGG	+	chr3_3:75999602-75999621	Msa0473390:intron	30.0%
TCAATAGAATTGAAAAACGC+TGG	-	chr3_3:75999645-75999664	None:intergenic	30.0%
TTAGTGGTTACTTATAGGAA+AGG	-	chr3_3:76000241-76000260	None:intergenic	30.0%
AACTCTTAGTGGTTACTTAT+AGG	-	chr3_3:76000246-76000265	None:intergenic	30.0%
CTAAACATTTCAACTCTTAG+TGG	-	chr3_3:76000257-76000276	None:intergenic	30.0%
AACAGGTCAAACAATAACTA+AGG	-	chr3_3:76000368-76000387	None:intergenic	30.0%
TTACATAGCGTTACAAAAAC+AGG	-	chr3_3:76000385-76000404	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	75998757	76002293	75998757	ID=Msa0473390;Name=Msa0473390
chr3_3	mRNA	75998757	76002293	75998757	ID=Msa0473390-mRNA-1;Parent=Msa0473390;Name=Msa0473390-mRNA-1;_AED=0.05;_eAED=0.05;_QI=99\|1\|1\|1\|0.75\|0.6\|5\|290\|233
chr3_3	exon	75998757	75999112	75998757	ID=Msa0473390-mRNA-1:exon:19832;Parent=Msa0473390-mRNA-1
chr3_3	exon	75999836	75999942	75999836	ID=Msa0473390-mRNA-1:exon:19833;Parent=Msa0473390-mRNA-1
chr3_3	exon	76001560	76001741	76001560	ID=Msa0473390-mRNA-1:exon:19834;Parent=Msa0473390-mRNA-1
chr3_3	exon	76001818	76002174	76001818	ID=Msa0473390-mRNA-1:exon:19835;Parent=Msa0473390-mRNA-1
chr3_3	exon	76002205	76002293	76002205	ID=Msa0473390-mRNA-1:exon:19836;Parent=Msa0473390-mRNA-1
chr3_3	five_prime_UTR	75998757	75998855	75998757	ID=Msa0473390-mRNA-1:five_prime_utr;Parent=Msa0473390-mRNA-1
chr3_3	CDS	75998856	75999112	75998856	ID=Msa0473390-mRNA-1:cds;Parent=Msa0473390-mRNA-1
chr3_3	CDS	75999836	75999942	75999836	ID=Msa0473390-mRNA-1:cds;Parent=Msa0473390-mRNA-1
chr3_3	CDS	76001560	76001741	76001560	ID=Msa0473390-mRNA-1:cds;Parent=Msa0473390-mRNA-1
chr3_3	CDS	76001818	76001973	76001818	ID=Msa0473390-mRNA-1:cds;Parent=Msa0473390-mRNA-1
chr3_3	three_prime_UTR	76001974	76002174	76001974	ID=Msa0473390-mRNA-1:three_prime_utr;Parent=Msa0473390-mRNA-1
chr3_3	three_prime_UTR	76002205	76002293	76002205	ID=Msa0473390-mRNA-1:three_prime_utr;Parent=Msa0473390-mRNA-1

Gene Sequence

>Msa0473390

ATGGCACCAAAAACAAGAACCGCAAGAGTGAGCCGTAACCCTGACTTGATCAGGGGTATCGGAAAATACTCGAGATCTGCTATGTATCACAAACGTGGTCTCTGGGCAATCAAGGCTAAGCACGGTGGAGCTTTCCCTCGCCACGATCCCGTCGCTAAGCCTGCAGCTCCGGCCGAGAAGCCGCCTAAGTTTTACCCCGCCGACGACGTGAAGAAGCCACTCCGCAACAAGCACAAGCCAAAACCCACTAAGCTCAGGGCTTCTATTACTCCAGGGACAGTGTTGATTCTTCTTGCTGGAAGATTTAAGGGAAAGAGAGTTGTGTTTCTCAAACAGCTTCCTTCTGGACTTCTTCTTGTTACCGGTCCATTCAAGATTAATGGAGTCCCCTTGAGACGTGTGAATCAGGCTTATGTTATCGGTACATCTACCAAAGTAGATATTTCTTCGGTTAATGTTGACAAGTTTGATGACAAGTATTTCTCAAAGGAATCCCAGAAAAAGACGAAGAAGGGAGAGAGCGAGTTCTTTGAGGCAGATAAGGAGGACAAAAAGGTGCTCCCTCAGGAGAAGAAAGATGATCAAAAGACTGTCGATGCTGGTTTGTTAAAAGCCATTGACAGTGTTCCAGACTTGAAAACTTACCTAGGTGCCAGGTTTTCCTTGAAGGCAGGTGTGAAGCCACATGAGTTGGTCTTCTAA

Protein sequence

>Msa0473390

MAPKTRTARVSRNPDLIRGIGKYSRSAMYHKRGLWAIKAKHGGAFPRHDPVAKPAAPAEKPPKFYPADDVKKPLRNKHKPKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISSVNVDKFDDKYFSKESQKKTKKGESEFFEADKEDKKVLPQEKKDDQKTVDAGLLKAIDSVPDLKTYLGARFSLKAGVKPHELVF*