Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0473390 | XP_003602457.1 | 98.283 | 233 | 4 | 0 | 1 | 233 | 1 | 233 | 4.60e-163 | 460 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0473390 | sp|P34091|RL6_MESCR | 79.741 | 232 | 47 | 0 | 2 | 233 | 3 | 234 | 8.94e-126 | 358 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0473390 | G7J9R6 | 98.283 | 233 | 4 | 0 | 1 | 233 | 1 | 233 | 2.19e-163 | 460 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001760 | Msa0473390 | 0.824268 | 8.849868e-54 | -8.615850e-47 |
| Msa0021290 | Msa0473390 | 0.816336 | 5.828658e-52 | -8.615850e-47 |
| Msa0021320 | Msa0473390 | 0.803193 | 3.917092e-49 | -8.615850e-47 |
| Msa0027590 | Msa0473390 | 0.808430 | 3.108807e-50 | -8.615850e-47 |
| Msa0132460 | Msa0473390 | 0.841282 | 5.222972e-58 | -8.615850e-47 |
| Msa0167860 | Msa0473390 | 0.800085 | 1.700342e-48 | -8.615850e-47 |
| Msa0182050 | Msa0473390 | 0.839376 | 1.643969e-57 | -8.615850e-47 |
| Msa0182100 | Msa0473390 | 0.807739 | 4.363297e-50 | -8.615850e-47 |
| Msa0377520 | Msa0473390 | 0.877392 | 6.520815e-69 | -8.615850e-47 |
| Msa0473390 | Msa0517480 | 0.852167 | 5.511871e-61 | -8.615850e-47 |
| Msa0473390 | Msa0540480 | 0.813496 | 2.485719e-51 | -8.615850e-47 |
| Msa0473390 | Msa0708630 | 0.840694 | 7.452828e-58 | -8.615850e-47 |
| Msa0473390 | Msa0929680 | 0.838480 | 2.804921e-57 | -8.615850e-47 |
| Msa0473390 | Msa0929700 | 0.819697 | 1.013414e-52 | -8.615850e-47 |
| Msa0473390 | Msa0930100 | 0.800046 | 1.731701e-48 | -8.615850e-47 |
| Msa0473390 | Msa1040160 | 0.802911 | 4.480230e-49 | -8.615850e-47 |
| Msa0473390 | Msa1116940 | 0.833501 | 5.144374e-56 | -8.615850e-47 |
| Msa0473390 | Msa1237040 | 0.805217 | 1.485028e-49 | -8.615850e-47 |
| Msa0473390 | Msa1284060 | 0.861346 | 1.094102e-63 | -8.615850e-47 |
| Msa0473390 | Msa1317390 | 0.805600 | 1.234239e-49 | -8.615850e-47 |
| Msa0473390 | Msa1347430 | 0.997110 | 4.843826e-237 | -8.615850e-47 |
| Msa0473390 | Msa1358710 | 0.800827 | 1.200612e-48 | -8.615850e-47 |
| Msa0313060 | Msa0473390 | 0.807444 | 5.039451e-50 | -8.615850e-47 |
| Msa0315430 | Msa0473390 | 0.823622 | 1.254497e-53 | -8.615850e-47 |
| Msa0340560 | Msa0473390 | 0.810835 | 9.457555e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0473390 | MtrunA17_Chr3g0129031 | 98.283 | 233 | 4 | 0 | 1 | 233 | 1 | 233 | 4.23e-167 | 460 |
| Msa0473390 | MtrunA17_Chr3g0129231 | 98.283 | 233 | 4 | 0 | 1 | 233 | 1 | 233 | 9.11e-167 | 459 |
| Msa0473390 | MtrunA17_Chr5g0448021 | 85.043 | 234 | 34 | 1 | 1 | 233 | 1 | 234 | 7.53e-142 | 396 |
| Msa0473390 | MtrunA17_Chr8g0383131 | 86.391 | 169 | 22 | 1 | 1 | 168 | 1 | 169 | 1.33e-101 | 293 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0473390 | AT1G74060.1 | 79.828 | 233 | 47 | 0 | 1 | 233 | 1 | 233 | 6.39e-121 | 343 |
| Msa0473390 | AT1G74050.1 | 79.828 | 233 | 47 | 0 | 1 | 233 | 1 | 233 | 1.32e-120 | 343 |
| Msa0473390 | AT1G18540.1 | 78.112 | 233 | 51 | 0 | 1 | 233 | 1 | 233 | 8.52e-114 | 325 |
Find 83 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTTGCTGGAAGATTTA+AGG | 0.132093 | 3_3:+75999866 | Msa0473390:CDS |
| TTTCTCAAACAGCTTCCTTC+TGG | 0.232559 | 3_3:+75999903 | Msa0473390:CDS |
| GGCTTCTCGGCCGGAGCTGC+AGG | 0.250032 | 3_3:-75999015 | None:intergenic |
| TTAGGTCCATTCAAGATTAA+TGG | 0.250233 | 3_3:+76001556 | Msa0473390:intron |
| AACCTGAGCTTAGTGGGTTT+TGG | 0.276883 | 3_3:-75999093 | None:intergenic |
| CAAGAGGACAAAATATATTA+AGG | 0.311546 | 3_3:-76002115 | None:intergenic |
| CTTCTTGCTGGAAGATTTAA+GGG | 0.311988 | 3_3:+75999867 | Msa0473390:CDS |
| TCTGGACTTCTTCTTGTTAC+CGG | 0.344596 | 3_3:+75999921 | Msa0473390:CDS |
| GGCTTCTTCACGTCGTCGGC+GGG | 0.353564 | 3_3:-75999051 | None:intergenic |
| TGGCTTCACACCTGCCTTCA+AGG | 0.355239 | 3_3:-76001933 | None:intergenic |
| CCCCTTGAGACGTGTGAATC+AGG | 0.357560 | 3_3:+76001582 | Msa0473390:CDS |
| ATTGTCTTCAACTAGGGTTT+AGG | 0.357564 | 3_3:+75998781 | Msa0473390:five_prime_UTR |
| GTATGGTATGCCAGCAATAA+AGG | 0.357845 | 3_3:-76002163 | None:intergenic |
| TGTATCACAAACGTGGTCTC+TGG | 0.360563 | 3_3:+75998938 | Msa0473390:CDS |
| CGAGTTCTTTGAGGCAGATA+AGG | 0.375748 | 3_3:+76001717 | Msa0473390:CDS |
| CAAGTCTGGAACACTGTCAA+TGG | 0.377541 | 3_3:-76001885 | None:intergenic |
| ACAGTGTTGATTCTTCTTGC+TGG | 0.383364 | 3_3:+75999855 | Msa0473390:CDS |
| CCGATACCCCTGATCAAGTC+AGG | 0.389802 | 3_3:-75998895 | None:intergenic |
| GCCGTAACCCTGACTTGATC+AGG | 0.402373 | 3_3:+75998887 | Msa0473390:CDS |
| TTCAGGGCTTCTATTACTCC+AGG | 0.405045 | 3_3:+75999831 | Msa0473390:intron |
| GTGAATCAGGCTTATGTTAT+CGG | 0.407883 | 3_3:+76001595 | Msa0473390:CDS |
| AAAAGCATTGTCTTCAACTA+GGG | 0.425787 | 3_3:+75998775 | Msa0473390:five_prime_UTR |
| CAAAAGCATTGTCTTCAACT+AGG | 0.442339 | 3_3:+75998774 | Msa0473390:five_prime_UTR |
| ACTAGGGTTTAGGTTTAGAC+AGG | 0.445812 | 3_3:+75998791 | Msa0473390:five_prime_UTR |
| AACCGAAGAAATATCTACTT+TGG | 0.446745 | 3_3:-76001626 | None:intergenic |
| TACCAAAGTAGATATTTCTT+CGG | 0.451633 | 3_3:+76001624 | Msa0473390:CDS |
| AGAAGAATCAACACTGTCCC+TGG | 0.473766 | 3_3:-75999849 | None:intergenic |
| TGCCATTGCTATTGGTGTGA+TGG | 0.475430 | 3_3:-75998839 | None:intergenic |
| GATCATCTTTCTTCTCCTGA+GGG | 0.477455 | 3_3:-76001832 | None:intergenic |
| AACTTAGGCGGCTTCTCGGC+CGG | 0.480002 | 3_3:-75999024 | None:intergenic |
| CGTCGCTAAGCCTGCAGCTC+CGG | 0.482998 | 3_3:+75999005 | Msa0473390:CDS |
| CCTGACTTGATCAGGGGTAT+CGG | 0.491288 | 3_3:+75998895 | Msa0473390:CDS |
| GCCATTGCTATTGGTGTGAT+GGG | 0.491348 | 3_3:-75998838 | None:intergenic |
| GGGACTCCATTAATCTTGAA+TGG | 0.491418 | 3_3:-76001562 | None:intergenic |
| TGATCATCTTTCTTCTCCTG+AGG | 0.494574 | 3_3:-76001833 | None:intergenic |
| TGAAAACTTACCTAGGTGCC+AGG | 0.495019 | 3_3:+76001906 | Msa0473390:CDS |
| GTAAAACTTAGGCGGCTTCT+CGG | 0.498660 | 3_3:-75999028 | None:intergenic |
| CACATGAGTTGGTCTTCTAA+AGG | 0.499867 | 3_3:+76001954 | Msa0473390:CDS |
| GGGAGAGAGCGAGTTCTTTG+AGG | 0.505471 | 3_3:+76001708 | Msa0473390:CDS |
| ACGTGGTCTCTGGGCAATCA+AGG | 0.510085 | 3_3:+75998948 | Msa0473390:CDS |
| TTGCTATTGGTGTGATGGGA+TGG | 0.510238 | 3_3:-75998834 | None:intergenic |
| ACCTGCCTTCAAGGAAAACC+TGG | 0.516282 | 3_3:-76001924 | None:intergenic |
| GGTGACGAACCTGAGCTTAG+TGG | 0.517641 | 3_3:-75999100 | None:intergenic |
| TGGCTTCTTCACGTCGTCGG+CGG | 0.523746 | 3_3:-75999052 | None:intergenic |
| CCCTGATCAAGTCAGGGTTA+CGG | 0.525127 | 3_3:-75998888 | None:intergenic |
| CGGAGCTGCAGGCTTAGCGA+CGG | 0.526524 | 3_3:-75999004 | None:intergenic |
| GTATCACAAACGTGGTCTCT+GGG | 0.530303 | 3_3:+75998939 | Msa0473390:CDS |
| AGCCTGATTCACACGTCTCA+AGG | 0.531824 | 3_3:-76001584 | None:intergenic |
| GATCAAAAGACTGTCGATGC+TGG | 0.534143 | 3_3:+76001851 | Msa0473390:CDS |
| GGAGCTGCAGGCTTAGCGAC+GGG | 0.545817 | 3_3:-75999003 | None:intergenic |
| GTGACGAACCTGAGCTTAGT+GGG | 0.562791 | 3_3:-75999099 | None:intergenic |
| GCCTGATTCACACGTCTCAA+GGG | 0.568583 | 3_3:-76001583 | None:intergenic |
| CAGGCTTAGCGACGGGATCG+TGG | 0.569427 | 3_3:-75998996 | None:intergenic |
| CCGTAACCCTGACTTGATCA+GGG | 0.572652 | 3_3:+75998888 | Msa0473390:CDS |
| ATAAAACCAAATGGTTCAAG+AGG | 0.575071 | 3_3:-76002131 | None:intergenic |
| TGATGACAAGTATTTCTCAA+AGG | 0.576844 | 3_3:+76001663 | Msa0473390:CDS |
| TAGCGACGGGATCGTGGCGA+GGG | 0.582049 | 3_3:-75998990 | None:intergenic |
| AGCCAAAACCCACTAAGCTC+AGG | 0.582122 | 3_3:+75999091 | Msa0473390:CDS |
| GAGTGGCTTCTTCACGTCGT+CGG | 0.583036 | 3_3:-75999055 | None:intergenic |
| TCAAGGAAAACCTGGCACCT+AGG | 0.589414 | 3_3:-76001916 | None:intergenic |
| GGTTTAGGTTTAGACAGGGA+GGG | 0.590416 | 3_3:+75998796 | Msa0473390:five_prime_UTR |
| GGCTTGTGCTTGTTGCGGAG+TGG | 0.594085 | 3_3:-75999072 | None:intergenic |
| TTAGCGACGGGATCGTGGCG+AGG | 0.595917 | 3_3:-75998991 | None:intergenic |
| TTAGGTTTAGACAGGGAGGG+AGG | 0.598908 | 3_3:+75998799 | Msa0473390:five_prime_UTR |
| CTAGGGTTTAGGTTTAGACA+GGG | 0.599669 | 3_3:+75998792 | Msa0473390:five_prime_UTR |
| CCAGACTTGAAAACTTACCT+AGG | 0.601511 | 3_3:+76001899 | Msa0473390:CDS |
| CGATACCCCTGATCAAGTCA+GGG | 0.606077 | 3_3:-75998894 | None:intergenic |
| CTTTAGAAGACCAACTCATG+TGG | 0.608084 | 3_3:-76001953 | None:intergenic |
| AGGTGTGAAGCCACATGAGT+TGG | 0.608147 | 3_3:+76001943 | Msa0473390:CDS |
| GTTCTTTGAGGCAGATAAGG+AGG | 0.609313 | 3_3:+76001720 | Msa0473390:CDS |
| TCCCATCACACCAATAGCAA+TGG | 0.612369 | 3_3:+75998837 | Msa0473390:exon |
| GTAACAAGAAGAAGTCCAGA+AGG | 0.620622 | 3_3:-75999918 | None:intergenic |
| TCAGGGCTTCTATTACTCCA+GGG | 0.623428 | 3_3:+75999832 | Msa0473390:intron |
| GCTTCTTCACGTCGTCGGCG+GGG | 0.624269 | 3_3:-75999050 | None:intergenic |
| AGGGTTACGGCTCACTCTTG+CGG | 0.626952 | 3_3:-75998875 | None:intergenic |
| TCGTCGGCGGGGTAAAACTT+AGG | 0.627965 | 3_3:-75999039 | None:intergenic |
| CCTGATTCACACGTCTCAAG+GGG | 0.635856 | 3_3:-76001582 | None:intergenic |
| GGGTTTAGGTTTAGACAGGG+AGG | 0.648737 | 3_3:+75998795 | Msa0473390:five_prime_UTR |
| TGGGCAATCAAGGCTAAGCA+CGG | 0.658739 | 3_3:+75998958 | Msa0473390:CDS |
| TCGGCGGGGTAAAACTTAGG+CGG | 0.660381 | 3_3:-75999036 | None:intergenic |
| CGTAACCCTGACTTGATCAG+GGG | 0.675659 | 3_3:+75998889 | Msa0473390:CDS |
| GCAATCAAGGCTAAGCACGG+TGG | 0.725321 | 3_3:+75998961 | Msa0473390:CDS |
| TCTGCTATGTATCACAAACG+TGG | 0.741302 | 3_3:+75998931 | Msa0473390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATATTTATAATTACAGA+TGG | + | chr3_3:75999471-75999490 | Msa0473390:intron | 10.0% |
| !! | TATTGTCATATAAAATAATT+TGG | + | chr3_3:76000027-76000046 | Msa0473390:intron | 10.0% |
| !!! | AAATTTTATATGATATCTTC+AGG | + | chr3_3:75999215-75999234 | Msa0473390:intron | 15.0% |
| !! | ACAATTGTATATCTAATTAA+TGG | - | chr3_3:75999401-75999420 | None:intergenic | 15.0% |
| !! | CTCAAAATTAGAATAAAAAA+GGG | - | chr3_3:75999672-75999691 | None:intergenic | 15.0% |
| !! | TCTCAAAATTAGAATAAAAA+AGG | - | chr3_3:75999673-75999692 | None:intergenic | 15.0% |
| !! | TTTCTTAAAACAATAATTAC+CGG | - | chr3_3:75999943-75999962 | None:intergenic | 15.0% |
| !!! | TATATTTGTTTGTTGTATTA+TGG | + | chr3_3:76000002-76000021 | Msa0473390:intron | 15.0% |
| !!! | ATATTTGTTTGTTGTATTAT+GGG | + | chr3_3:76000003-76000022 | Msa0473390:intron | 15.0% |
| !! | TGTATTTGGTAAATATTATT+TGG | + | chr3_3:76000110-76000129 | Msa0473390:intron | 15.0% |
| !! | ATGTAAAGACTAAAAATATA+AGG | + | chr3_3:76000399-76000418 | Msa0473390:intron | 15.0% |
| !!! | AAATAGAAAATCTAGAATTA+TGG | - | chr3_3:76000469-76000488 | None:intergenic | 15.0% |
| !!! | ATAATTCTAGATTTTCTATT+TGG | + | chr3_3:76000468-76000487 | Msa0473390:intron | 15.0% |
| !!! | GACTAATTTTTTAATTCTTT+GGG | + | chr3_3:76000563-76000582 | Msa0473390:intron | 15.0% |
| !!! | ACTAATTTTTTAATTCTTTG+GGG | + | chr3_3:76000564-76000583 | Msa0473390:intron | 15.0% |
| !! | TATTTATTTATAGTTTCAAG+TGG | - | chr3_3:76000611-76000630 | None:intergenic | 15.0% |
| !! | ATTGATATGTTAAGATTAAA+AGG | + | chr3_3:76000645-76000664 | Msa0473390:intron | 15.0% |
| !!! | ATATACATTTTTTGTTTAGT+AGG | + | chr3_3:76000799-76000818 | Msa0473390:intron | 15.0% |
| !!! | AATTTTTAGAAATATTAGGA+TGG | - | chr3_3:76000864-76000883 | None:intergenic | 15.0% |
| !!! | CATGAATTTTTAGAAATATT+AGG | - | chr3_3:76000868-76000887 | None:intergenic | 15.0% |
| !! | TTAAAATTAAGAATCAAGTT+GGG | - | chr3_3:76000936-76000955 | None:intergenic | 15.0% |
| !! | ATTAAAATTAAGAATCAAGT+TGG | - | chr3_3:76000937-76000956 | None:intergenic | 15.0% |
| !! | AAAAAATCAATGATTTAACT+TGG | + | chr3_3:76001134-76001153 | Msa0473390:intron | 15.0% |
| !! | AAAGATATTATTAAGTGTAT+TGG | - | chr3_3:76001367-76001386 | None:intergenic | 15.0% |
| !! | AATATAGAAACTGTTGATAT+TGG | + | chr3_3:75999598-75999617 | Msa0473390:intron | 20.0% |
| !!! | TTGTTATACTACGTTTATTT+TGG | + | chr3_3:75999701-75999720 | Msa0473390:intron | 20.0% |
| !! | ATAAATCATTCAATTTGACA+AGG | - | chr3_3:75999793-75999812 | None:intergenic | 20.0% |
| !! | GTCAAATTGAATGATTTATT+TGG | + | chr3_3:75999794-75999813 | Msa0473390:intron | 20.0% |
| !!! | TGCTTATTTAAAGTTTGTTT+TGG | + | chr3_3:76000084-76000103 | Msa0473390:intron | 20.0% |
| !! | AATATAAGGTAGTACATTTA+TGG | + | chr3_3:76000413-76000432 | Msa0473390:intron | 20.0% |
| !!! | GGACTAATTTTTTAATTCTT+TGG | + | chr3_3:76000562-76000581 | Msa0473390:intron | 20.0% |
| !! | TAATCTTAACATATCAATCA+AGG | - | chr3_3:76000643-76000662 | None:intergenic | 20.0% |
| !!! | ATTTCTAAAAATTCATGTAG+AGG | + | chr3_3:76000871-76000890 | Msa0473390:intron | 20.0% |
| !!! | TAAAATTAAGAATCAAGTTG+GGG | - | chr3_3:76000935-76000954 | None:intergenic | 20.0% |
| !!! | TTTTAATTGCACTGTTTATT+AGG | + | chr3_3:76000950-76000969 | Msa0473390:intron | 20.0% |
| !!! | TAAACCTACTTTTTTTATCT+GGG | + | chr3_3:76001192-76001211 | Msa0473390:intron | 20.0% |
| !! | TTATGCTCTATTTATTTCAA+TGG | + | chr3_3:76001262-76001281 | Msa0473390:intron | 20.0% |
| !! | TATGCTCTATTTATTTCAAT+GGG | + | chr3_3:76001263-76001282 | Msa0473390:intron | 20.0% |
| !!! | TTAATAATATCTTTTGCTCA+TGG | + | chr3_3:76001373-76001392 | Msa0473390:intron | 20.0% |
| !!! | ATAATTCTAGTTGTTTTATC+TGG | + | chr3_3:76001427-76001446 | Msa0473390:intron | 20.0% |
| !!! | TAATTCTAGTTGTTTTATCT+GGG | + | chr3_3:76001428-76001447 | Msa0473390:intron | 20.0% |
| !!! | TGTTTTTTTGCTTGTTATTT+TGG | + | chr3_3:76001997-76002016 | Msa0473390:three_prime_UTR | 20.0% |
| !!! | AACATAGAATACAAGTTTTT+CGG | - | chr3_3:76002083-76002102 | None:intergenic | 20.0% |
| !! | CTAAAAATCATAAAACCAAA+TGG | - | chr3_3:76002143-76002162 | None:intergenic | 20.0% |
| ! | TTATCAGTAGAAATGAACAA+TGG | - | chr3_3:75999124-75999143 | None:intergenic | 25.0% |
| ! | CTCAAAATTGCAACAAAAAA+AGG | - | chr3_3:75999148-75999167 | None:intergenic | 25.0% |
| ! | TTTATATGATATCTTCAGGT+TGG | + | chr3_3:75999219-75999238 | Msa0473390:intron | 25.0% |
| !!! | TTGTTTTGTCTGTTAAAACT+GGG | + | chr3_3:75999288-75999307 | Msa0473390:intron | 25.0% |
| !!! | AAGATGTGGTGTTTTTTTAA+TGG | + | chr3_3:75999354-75999373 | Msa0473390:intron | 25.0% |
| ! | TAGATATACAATTGTATCCA+AGG | + | chr3_3:75999406-75999425 | Msa0473390:intron | 25.0% |
| ! | TATTTATAATTACAGATGGC+TGG | + | chr3_3:75999475-75999494 | Msa0473390:intron | 25.0% |
| !!! | TAGTTGTAAAGTTTTGGAAA+TGG | - | chr3_3:75999525-75999544 | None:intergenic | 25.0% |
| !! | ACAGTTTAGTTGTAAAGTTT+TGG | - | chr3_3:75999531-75999550 | None:intergenic | 25.0% |
| ! | CAGTTATATACATAAAATGC+TGG | - | chr3_3:75999980-75999999 | None:intergenic | 25.0% |
| !!! | GTTTGTTTTGGATTTGTATT+TGG | + | chr3_3:76000096-76000115 | Msa0473390:intron | 25.0% |
| ! | TTTCCATTGAAAATTACATG+AGG | + | chr3_3:76000199-76000218 | Msa0473390:intron | 25.0% |
| ! | TAAAAGCTATGTAAAGAAGT+TGG | + | chr3_3:76000313-76000332 | Msa0473390:intron | 25.0% |
| ! | ATTATGGTCTGCAATATAAA+AGG | - | chr3_3:76000453-76000472 | None:intergenic | 25.0% |
| ! | CAACAAAGAAAACGATAATT+GGG | + | chr3_3:76000541-76000560 | Msa0473390:intron | 25.0% |
| ! | GTGGATCAATATGTAATTAA+AGG | - | chr3_3:76000592-76000611 | None:intergenic | 25.0% |
| ! | GTAAATTAAGACTAGAGATT+AGG | + | chr3_3:76000709-76000728 | Msa0473390:intron | 25.0% |
| ! | GAAAGATATTAGTATTACCA+TGG | - | chr3_3:76000840-76000859 | None:intergenic | 25.0% |
| !! | TATACATTTTCATCACACTA+TGG | - | chr3_3:76001102-76001121 | None:intergenic | 25.0% |
| !!! | CTAAACCTACTTTTTTTATC+TGG | + | chr3_3:76001191-76001210 | Msa0473390:intron | 25.0% |
| ! | AATAAATAGAGCATAACCTA+TGG | - | chr3_3:76001258-76001277 | None:intergenic | 25.0% |
| ! | TACCAAAGTAGATATTTCTT+CGG | + | chr3_3:76001624-76001643 | Msa0473390:CDS | 25.0% |
| !!! | TGTTTGTTGAGTTGATATTT+TGG | + | chr3_3:76001745-76001764 | Msa0473390:intron | 25.0% |
| !!! | TTACAATGCTTTTGCTTTTT+AGG | + | chr3_3:76001796-76001815 | Msa0473390:intron | 25.0% |
| !!! | TTTTGCTTTTTAGGACAAAA+AGG | + | chr3_3:76001805-76001824 | Msa0473390:intron | 25.0% |
| ! | CAAGAGGACAAAATATATTA+AGG | - | chr3_3:76002118-76002137 | None:intergenic | 25.0% |
| !!! | TTTGTTGTTTGAAATCAGTA+TGG | - | chr3_3:76002183-76002202 | None:intergenic | 25.0% |
| !!! | TACTGATTTCAAACAACAAA+AGG | + | chr3_3:76002183-76002202 | Msa0473390:intron | 25.0% |
| !! | ACTGATTTCAAACAACAAAA+GGG | + | chr3_3:76002184-76002203 | Msa0473390:intron | 25.0% |
| !! | AAAAGCATTGTCTTCAACTA+GGG | + | chr3_3:75998775-75998794 | Msa0473390:five_prime_UTR | 30.0% |
| TAACAGATCCAAAATAAACG+TGG | - | chr3_3:75999177-75999196 | None:intergenic | 30.0% | |
| AATCACAATAACTCCACAAA+GGG | - | chr3_3:75999262-75999281 | None:intergenic | 30.0% | |
| !!! | CTTGTTTTGTCTGTTAAAAC+TGG | + | chr3_3:75999287-75999306 | Msa0473390:intron | 30.0% |
| TGATGACTGAGTTAATATAG+TGG | + | chr3_3:75999443-75999462 | Msa0473390:intron | 30.0% | |
| TAGAAACTGTTGATATTGGT+AGG | + | chr3_3:75999602-75999621 | Msa0473390:intron | 30.0% | |
| TCAATAGAATTGAAAAACGC+TGG | - | chr3_3:75999645-75999664 | None:intergenic | 30.0% | |
| ! | ACACCTCATGTAATTTTCAA+TGG | - | chr3_3:76000205-76000224 | None:intergenic | 30.0% |
| TTAGTGGTTACTTATAGGAA+AGG | - | chr3_3:76000241-76000260 | None:intergenic | 30.0% | |
| AACTCTTAGTGGTTACTTAT+AGG | - | chr3_3:76000246-76000265 | None:intergenic | 30.0% | |
| CTAAACATTTCAACTCTTAG+TGG | - | chr3_3:76000257-76000276 | None:intergenic | 30.0% | |
| !!! | AGGTTGGTTTTTTTCAAAAC+AGG | - | chr3_3:76000348-76000367 | None:intergenic | 30.0% |
| AACAGGTCAAACAATAACTA+AGG | - | chr3_3:76000368-76000387 | None:intergenic | 30.0% | |
| TTACATAGCGTTACAAAAAC+AGG | - | chr3_3:76000385-76000404 | None:intergenic | 30.0% | |
| ! | CTATTTGGTTTCTTGTACTT+TGG | + | chr3_3:76000483-76000502 | Msa0473390:intron | 30.0% |
| ! | CCAATTATCGTTTTCTTTGT+TGG | - | chr3_3:76000543-76000562 | None:intergenic | 30.0% |
| CCAACAAAGAAAACGATAAT+TGG | + | chr3_3:76000540-76000559 | Msa0473390:intron | 30.0% | |
| TATAACTTTACCAACTTCCA+TGG | + | chr3_3:76000682-76000701 | Msa0473390:intron | 30.0% | |
| AGTATGTTCAAATCTAGAGA+CGG | - | chr3_3:76000984-76001003 | None:intergenic | 30.0% | |
| AGACATGACAATATCGAATT+TGG | + | chr3_3:76001031-76001050 | Msa0473390:intron | 30.0% | |
| ATGACAATATCGAATTTGGT+TGG | + | chr3_3:76001035-76001054 | Msa0473390:intron | 30.0% | |
| ACATCCCAGATAAAAAAAGT+AGG | - | chr3_3:76001199-76001218 | None:intergenic | 30.0% | |
| GGGATGTGTTTAAATATACT+AGG | + | chr3_3:76001212-76001231 | Msa0473390:intron | 30.0% | |
| ATTAATCTTGAATGGACCTA+AGG | - | chr3_3:76001557-76001576 | None:intergenic | 30.0% | |
| TTAGGTCCATTCAAGATTAA+TGG | + | chr3_3:76001556-76001575 | Msa0473390:intron | 30.0% | |
| AACCGAAGAAATATCTACTT+TGG | - | chr3_3:76001629-76001648 | None:intergenic | 30.0% | |
| TGATGACAAGTATTTCTCAA+AGG | + | chr3_3:76001663-76001682 | Msa0473390:CDS | 30.0% | |
| !! | TTTTGGTTGTTTGTCAAACT+AGG | + | chr3_3:76002014-76002033 | Msa0473390:three_prime_UTR | 30.0% |
| ATAAAACCAAATGGTTCAAG+AGG | - | chr3_3:76002134-76002153 | None:intergenic | 30.0% | |
| !!! | TGATTTTTAGCCTTTATTGC+TGG | + | chr3_3:76002153-76002172 | Msa0473390:three_prime_UTR | 30.0% |
| !! | CAAAAGCATTGTCTTCAACT+AGG | + | chr3_3:75998774-75998793 | Msa0473390:five_prime_UTR | 35.0% |
| ATTGTCTTCAACTAGGGTTT+AGG | + | chr3_3:75998781-75998800 | Msa0473390:five_prime_UTR | 35.0% | |
| ! | AGTAACTGCCACGTTTATTT+TGG | + | chr3_3:75999166-75999185 | Msa0473390:intron | 35.0% |
| GAAATTTAATTCCCCCTTTG+TGG | + | chr3_3:75999246-75999265 | Msa0473390:intron | 35.0% | |
| ATCACAATAACTCCACAAAG+GGG | - | chr3_3:75999261-75999280 | None:intergenic | 35.0% | |
| GAATCACAATAACTCCACAA+AGG | - | chr3_3:75999263-75999282 | None:intergenic | 35.0% | |
| ! | TTTTGTCTGTTAAAACTGGG+TGG | + | chr3_3:75999291-75999310 | Msa0473390:intron | 35.0% |
| GCTGATGTTTGATTAAGATG+TGG | + | chr3_3:75999340-75999359 | Msa0473390:intron | 35.0% | |
| ATATTAGTTGCTACCAATGC+TGG | - | chr3_3:75999583-75999602 | None:intergenic | 35.0% | |
| GCAATCAGTCAATAAACAAG+AGG | - | chr3_3:75999771-75999790 | None:intergenic | 35.0% | |
| !! | TGGTACCTGAATTTGTTTTC+AGG | + | chr3_3:75999814-75999833 | Msa0473390:intron | 35.0% |
| !! | GGTACCTGAATTTGTTTTCA+GGG | + | chr3_3:75999815-75999834 | Msa0473390:intron | 35.0% |
| TCTTCTTGCTGGAAGATTTA+AGG | + | chr3_3:75999866-75999885 | Msa0473390:CDS | 35.0% | |
| CTTCTTGCTGGAAGATTTAA+GGG | + | chr3_3:75999867-75999886 | Msa0473390:CDS | 35.0% | |
| TGAAAATTACATGAGGTGTG+TGG | + | chr3_3:76000206-76000225 | Msa0473390:intron | 35.0% | |
| GGTCAAACAATAACTAAGGT+TGG | - | chr3_3:76000364-76000383 | None:intergenic | 35.0% | |
| AGTCTTAATTTACACCTCCA+TGG | - | chr3_3:76000702-76000721 | None:intergenic | 35.0% | |
| CCTGTGACAAGCATATTAAT+AGG | - | chr3_3:76000758-76000777 | None:intergenic | 35.0% | |
| CCTATTAATATGCTTGTCAC+AGG | + | chr3_3:76000755-76000774 | Msa0473390:intron | 35.0% | |
| GGTCAGAGTAAAAAATTCCA+TGG | + | chr3_3:76000820-76000839 | Msa0473390:intron | 35.0% | |
| !! | TCAAATCTAGAGACGGATTA+GGG | - | chr3_3:76000977-76000996 | None:intergenic | 35.0% |
| ! | TTCAAATCTAGAGACGGATT+AGG | - | chr3_3:76000978-76000997 | None:intergenic | 35.0% |
| CTAGATTTGAACATACTCGA+TGG | + | chr3_3:76000987-76001006 | Msa0473390:intron | 35.0% | |
| CGATGGTCTATTAGTGAAAT+AGG | + | chr3_3:76001004-76001023 | Msa0473390:intron | 35.0% | |
| ATTCATCACACTAAGGTAAG+AGG | - | chr3_3:76001063-76001082 | None:intergenic | 35.0% | |
| CAACTCAATTCATCACACTA+AGG | - | chr3_3:76001070-76001089 | None:intergenic | 35.0% | |
| TGGAGATGTATAACTAGGTT+TGG | - | chr3_3:76001238-76001257 | None:intergenic | 35.0% | |
| ACCTAGTTATACATCTCCAT+AGG | + | chr3_3:76001239-76001258 | Msa0473390:intron | 35.0% | |
| ACCTATGGAGATGTATAACT+AGG | - | chr3_3:76001243-76001262 | None:intergenic | 35.0% | |
| GTTAACTCAATCATCATCTG+TGG | - | chr3_3:76001306-76001325 | None:intergenic | 35.0% | |
| GAAGATTTGTCAAAGATGAG+TGG | - | chr3_3:76001516-76001535 | None:intergenic | 35.0% | |
| TTGTTCACTCTCATTACCTT+AGG | + | chr3_3:76001538-76001557 | Msa0473390:intron | 35.0% | |
| GTGAATCAGGCTTATGTTAT+CGG | + | chr3_3:76001595-76001614 | Msa0473390:CDS | 35.0% | |
| ! | TTTTGTCCTCTTGAACCATT+TGG | + | chr3_3:76002125-76002144 | Msa0473390:three_prime_UTR | 35.0% |
| !!! | TCAGTTTTGCAAAGTACTGA+AGG | - | chr3_3:76002224-76002243 | None:intergenic | 35.0% |
| ! | ACTAGGGTTTAGGTTTAGAC+AGG | + | chr3_3:75998791-75998810 | Msa0473390:five_prime_UTR | 40.0% |
| ! | CTAGGGTTTAGGTTTAGACA+GGG | + | chr3_3:75998792-75998811 | Msa0473390:five_prime_UTR | 40.0% |
| !!! | GTTTTTGGTGCCATTGCTAT+TGG | - | chr3_3:75998850-75998869 | None:intergenic | 40.0% |
| !!! | ACTCTTGCGGTTCTTGTTTT+TGG | - | chr3_3:75998865-75998884 | None:intergenic | 40.0% |
| TCTGCTATGTATCACAAACG+TGG | + | chr3_3:75998931-75998950 | Msa0473390:CDS | 40.0% | |
| TCACAATAACTCCACAAAGG+GGG | - | chr3_3:75999260-75999279 | None:intergenic | 40.0% | |
| TTTCTTCCTGCATTAGTGCT+GGG | + | chr3_3:75999318-75999337 | Msa0473390:intron | 40.0% | |
| !! | TGAAGAAAGAGTACCAGCAT+TGG | + | chr3_3:75999567-75999586 | Msa0473390:intron | 40.0% |
| TATTGGTAGGAACTAAGCTC+AGG | + | chr3_3:75999615-75999634 | Msa0473390:intron | 40.0% | |
| GAAGCCCTGAAAACAAATTC+AGG | - | chr3_3:75999822-75999841 | None:intergenic | 40.0% | |
| !! | ACAGTGTTGATTCTTCTTGC+TGG | + | chr3_3:75999855-75999874 | Msa0473390:CDS | 40.0% |
| TTTCTCAAACAGCTTCCTTC+TGG | + | chr3_3:75999903-75999922 | Msa0473390:CDS | 40.0% | |
| GTAACAAGAAGAAGTCCAGA+AGG | - | chr3_3:75999921-75999940 | None:intergenic | 40.0% | |
| TCTGGACTTCTTCTTGTTAC+CGG | + | chr3_3:75999921-75999940 | Msa0473390:CDS | 40.0% | |
| GCTATGTAAAGAAGTTGGAC+AGG | + | chr3_3:76000318-76000337 | Msa0473390:intron | 40.0% | |
| GGTAGTACATTTATGGATGC+AGG | + | chr3_3:76000420-76000439 | Msa0473390:intron | 40.0% | |
| AACTTTACCAACTTCCATGG+AGG | + | chr3_3:76000685-76000704 | Msa0473390:intron | 40.0% | |
| ATTTACACCTCCATGGAAGT+TGG | - | chr3_3:76000695-76000714 | None:intergenic | 40.0% | |
| TGTCCGAACTTGAACTTTAC+TGG | + | chr3_3:76000732-76000751 | Msa0473390:intron | 40.0% | |
| ! | AGGCCAGTAAAGTTCAAGTT+CGG | - | chr3_3:76000738-76000757 | None:intergenic | 40.0% |
| TTTCCATTGTGTATGTCCAC+TGG | + | chr3_3:76001164-76001183 | Msa0473390:intron | 40.0% | |
| CTCATGGTTTCCATTGTCTA+TGG | + | chr3_3:76001389-76001408 | Msa0473390:intron | 40.0% | |
| ATGCAAGTGACCATAGACAA+TGG | - | chr3_3:76001402-76001421 | None:intergenic | 40.0% | |
| GATTTGTCAAAGATGAGTGG+AGG | - | chr3_3:76001513-76001532 | None:intergenic | 40.0% | |
| GGGACTCCATTAATCTTGAA+TGG | - | chr3_3:76001565-76001584 | None:intergenic | 40.0% | |
| ATCCCAGAAAAAGACGAAGA+AGG | + | chr3_3:76001687-76001706 | Msa0473390:CDS | 40.0% | |
| TCCCAGAAAAAGACGAAGAA+GGG | + | chr3_3:76001688-76001707 | Msa0473390:CDS | 40.0% | |
| ! | TCCCTTCTTCGTCTTTTTCT+GGG | - | chr3_3:76001692-76001711 | None:intergenic | 40.0% |
| GATCATCTTTCTTCTCCTGA+GGG | - | chr3_3:76001835-76001854 | None:intergenic | 40.0% | |
| TGATCATCTTTCTTCTCCTG+AGG | - | chr3_3:76001836-76001855 | None:intergenic | 40.0% | |
| !!! | CCTAGGTAAGTTTTCAAGTC+TGG | - | chr3_3:76001902-76001921 | None:intergenic | 40.0% |
| CCAGACTTGAAAACTTACCT+AGG | + | chr3_3:76001899-76001918 | Msa0473390:CDS | 40.0% | |
| ! | CTTTAGAAGACCAACTCATG+TGG | - | chr3_3:76001956-76001975 | None:intergenic | 40.0% |
| !! | CACATGAGTTGGTCTTCTAA+AGG | + | chr3_3:76001954-76001973 | Msa0473390:CDS | 40.0% |
| GTATGGTATGCCAGCAATAA+AGG | - | chr3_3:76002166-76002185 | None:intergenic | 40.0% | |
| ! | GGTTTAGGTTTAGACAGGGA+GGG | + | chr3_3:75998796-75998815 | Msa0473390:five_prime_UTR | 45.0% |
| ! | TTGCTATTGGTGTGATGGGA+TGG | - | chr3_3:75998837-75998856 | None:intergenic | 45.0% |
| TCCCATCACACCAATAGCAA+TGG | + | chr3_3:75998837-75998856 | Msa0473390:exon | 45.0% | |
| ! | GCCATTGCTATTGGTGTGAT+GGG | - | chr3_3:75998841-75998860 | None:intergenic | 45.0% |
| ! | TGCCATTGCTATTGGTGTGA+TGG | - | chr3_3:75998842-75998861 | None:intergenic | 45.0% |
| TGTATCACAAACGTGGTCTC+TGG | + | chr3_3:75998938-75998957 | Msa0473390:CDS | 45.0% | |
| GTATCACAAACGTGGTCTCT+GGG | + | chr3_3:75998939-75998958 | Msa0473390:CDS | 45.0% | |
| GTAAAACTTAGGCGGCTTCT+CGG | - | chr3_3:75999031-75999050 | None:intergenic | 45.0% | |
| !!! | GTTTTGGCTTGTGCTTGTTG+CGG | - | chr3_3:75999080-75999099 | None:intergenic | 45.0% |
| !!! | AACCTGAGCTTAGTGGGTTT+TGG | - | chr3_3:75999096-75999115 | None:intergenic | 45.0% |
| TGTCTGTTAAAACTGGGTGG+TGG | + | chr3_3:75999294-75999313 | Msa0473390:intron | 45.0% | |
| GTCTGTTAAAACTGGGTGGT+GGG | + | chr3_3:75999295-75999314 | Msa0473390:intron | 45.0% | |
| GTTTCTTCCTGCATTAGTGC+TGG | + | chr3_3:75999317-75999336 | Msa0473390:intron | 45.0% | |
| TTCAGGGCTTCTATTACTCC+AGG | + | chr3_3:75999831-75999850 | Msa0473390:intron | 45.0% | |
| TCAGGGCTTCTATTACTCCA+GGG | + | chr3_3:75999832-75999851 | Msa0473390:intron | 45.0% | |
| AGAAGAATCAACACTGTCCC+TGG | - | chr3_3:75999852-75999871 | None:intergenic | 45.0% | |
| AGGTGAGCAGAGTTATGTGT+TGG | + | chr3_3:76000891-76000910 | Msa0473390:intron | 45.0% | |
| GGTGAGCAGAGTTATGTGTT+GGG | + | chr3_3:76000892-76000911 | Msa0473390:intron | 45.0% | |
| GTGAGCAGAGTTATGTGTTG+GGG | + | chr3_3:76000893-76000912 | Msa0473390:intron | 45.0% | |
| TGAGCAGAGTTATGTGTTGG+GGG | + | chr3_3:76000894-76000913 | Msa0473390:intron | 45.0% | |
| ATGCCAGTGGACATACACAA+TGG | - | chr3_3:76001170-76001189 | None:intergenic | 45.0% | |
| AAGTAGGTTTAGCATGCCAG+TGG | - | chr3_3:76001183-76001202 | None:intergenic | 45.0% | |
| ! | CTCCCTTCTTCGTCTTTTTC+TGG | - | chr3_3:76001693-76001712 | None:intergenic | 45.0% |
| !! | CGAGTTCTTTGAGGCAGATA+AGG | + | chr3_3:76001717-76001736 | Msa0473390:CDS | 45.0% |
| !! | GTTCTTTGAGGCAGATAAGG+AGG | + | chr3_3:76001720-76001739 | Msa0473390:CDS | 45.0% |
| GATCAAAAGACTGTCGATGC+TGG | + | chr3_3:76001851-76001870 | Msa0473390:CDS | 45.0% | |
| ! | CAAGTCTGGAACACTGTCAA+TGG | - | chr3_3:76001888-76001907 | None:intergenic | 45.0% |
| TGAAAACTTACCTAGGTGCC+AGG | + | chr3_3:76001906-76001925 | Msa0473390:CDS | 45.0% | |
| ! | GGGTTTAGGTTTAGACAGGG+AGG | + | chr3_3:75998795-75998814 | Msa0473390:five_prime_UTR | 50.0% |
| TTAGGTTTAGACAGGGAGGG+AGG | + | chr3_3:75998799-75998818 | Msa0473390:five_prime_UTR | 50.0% | |
| CCCTGATCAAGTCAGGGTTA+CGG | - | chr3_3:75998891-75998910 | None:intergenic | 50.0% | |
| ! | CCGTAACCCTGACTTGATCA+GGG | + | chr3_3:75998888-75998907 | Msa0473390:CDS | 50.0% |
| ! | CGTAACCCTGACTTGATCAG+GGG | + | chr3_3:75998889-75998908 | Msa0473390:CDS | 50.0% |
| CGATACCCCTGATCAAGTCA+GGG | - | chr3_3:75998897-75998916 | None:intergenic | 50.0% | |
| ! | CCTGACTTGATCAGGGGTAT+CGG | + | chr3_3:75998895-75998914 | Msa0473390:CDS | 50.0% |
| TGGGCAATCAAGGCTAAGCA+CGG | + | chr3_3:75998958-75998977 | Msa0473390:CDS | 50.0% | |
| AGCCAAAACCCACTAAGCTC+AGG | + | chr3_3:75999091-75999110 | Msa0473390:CDS | 50.0% | |
| GTGACGAACCTGAGCTTAGT+GGG | - | chr3_3:75999102-75999121 | None:intergenic | 50.0% | |
| TCAACAAGCTGAACGAGCCT+TGG | - | chr3_3:75999426-75999445 | None:intergenic | 50.0% | |
| CCTGATTCACACGTCTCAAG+GGG | - | chr3_3:76001585-76001604 | None:intergenic | 50.0% | |
| GCCTGATTCACACGTCTCAA+GGG | - | chr3_3:76001586-76001605 | None:intergenic | 50.0% | |
| AGCCTGATTCACACGTCTCA+AGG | - | chr3_3:76001587-76001606 | None:intergenic | 50.0% | |
| TCAAGGAAAACCTGGCACCT+AGG | - | chr3_3:76001919-76001938 | None:intergenic | 50.0% | |
| ! | AGGTGCCAGGTTTTCCTTGA+AGG | + | chr3_3:76001919-76001938 | Msa0473390:CDS | 50.0% |
| ACCTGCCTTCAAGGAAAACC+TGG | - | chr3_3:76001927-76001946 | None:intergenic | 50.0% | |
| AGGTGTGAAGCCACATGAGT+TGG | + | chr3_3:76001943-76001962 | Msa0473390:CDS | 50.0% | |
| AGGGTTACGGCTCACTCTTG+CGG | - | chr3_3:75998878-75998897 | None:intergenic | 55.0% | |
| ! | GCCGTAACCCTGACTTGATC+AGG | + | chr3_3:75998887-75998906 | Msa0473390:CDS | 55.0% |
| CCGATACCCCTGATCAAGTC+AGG | - | chr3_3:75998898-75998917 | None:intergenic | 55.0% | |
| ACGTGGTCTCTGGGCAATCA+AGG | + | chr3_3:75998948-75998967 | Msa0473390:CDS | 55.0% | |
| GCAATCAAGGCTAAGCACGG+TGG | + | chr3_3:75998961-75998980 | Msa0473390:CDS | 55.0% | |
| TCGGCGGGGTAAAACTTAGG+CGG | - | chr3_3:75999039-75999058 | None:intergenic | 55.0% | |
| TCGTCGGCGGGGTAAAACTT+AGG | - | chr3_3:75999042-75999061 | None:intergenic | 55.0% | |
| GAGTGGCTTCTTCACGTCGT+CGG | - | chr3_3:75999058-75999077 | None:intergenic | 55.0% | |
| GGTGACGAACCTGAGCTTAG+TGG | - | chr3_3:75999103-75999122 | None:intergenic | 55.0% | |
| CATCAGCCCAGCACTAATGC+AGG | - | chr3_3:75999327-75999346 | None:intergenic | 55.0% | |
| CCCCTTGAGACGTGTGAATC+AGG | + | chr3_3:76001582-76001601 | Msa0473390:CDS | 55.0% | |
| GGGAGAGAGCGAGTTCTTTG+AGG | + | chr3_3:76001708-76001727 | Msa0473390:CDS | 55.0% | |
| !! | GGACAAAAAGGTGCTCCCTC+AGG | + | chr3_3:76001817-76001836 | Msa0473390:intron | 55.0% |
| ! | GCCAGGTTTTCCTTGAAGGC+AGG | + | chr3_3:76001923-76001942 | Msa0473390:CDS | 55.0% |
| TGGCTTCACACCTGCCTTCA+AGG | - | chr3_3:76001936-76001955 | None:intergenic | 55.0% | |
| AACTTAGGCGGCTTCTCGGC+CGG | - | chr3_3:75999027-75999046 | None:intergenic | 60.0% | |
| TGGCTTCTTCACGTCGTCGG+CGG | - | chr3_3:75999055-75999074 | None:intergenic | 60.0% | |
| ! | GGCTTGTGCTTGTTGCGGAG+TGG | - | chr3_3:75999075-75999094 | None:intergenic | 60.0% |
| TAGCGACGGGATCGTGGCGA+GGG | - | chr3_3:75998993-75999012 | None:intergenic | 65.0% | |
| TTAGCGACGGGATCGTGGCG+AGG | - | chr3_3:75998994-75999013 | None:intergenic | 65.0% | |
| CAGGCTTAGCGACGGGATCG+TGG | - | chr3_3:75998999-75999018 | None:intergenic | 65.0% | |
| GGAGCTGCAGGCTTAGCGAC+GGG | - | chr3_3:75999006-75999025 | None:intergenic | 65.0% | |
| CGGAGCTGCAGGCTTAGCGA+CGG | - | chr3_3:75999007-75999026 | None:intergenic | 65.0% | |
| CGTCGCTAAGCCTGCAGCTC+CGG | + | chr3_3:75999005-75999024 | Msa0473390:CDS | 65.0% | |
| GCTTCTTCACGTCGTCGGCG+GGG | - | chr3_3:75999053-75999072 | None:intergenic | 65.0% | |
| GGCTTCTTCACGTCGTCGGC+GGG | - | chr3_3:75999054-75999073 | None:intergenic | 65.0% | |
| GGCTTCTCGGCCGGAGCTGC+AGG | - | chr3_3:75999018-75999037 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 75998757 | 76002293 | 75998757 | ID=Msa0473390;Name=Msa0473390 |
| chr3_3 | mRNA | 75998757 | 76002293 | 75998757 | ID=Msa0473390-mRNA-1;Parent=Msa0473390;Name=Msa0473390-mRNA-1;_AED=0.05;_eAED=0.05;_QI=99|1|1|1|0.75|0.6|5|290|233 |
| chr3_3 | exon | 75998757 | 75999112 | 75998757 | ID=Msa0473390-mRNA-1:exon:19832;Parent=Msa0473390-mRNA-1 |
| chr3_3 | exon | 75999836 | 75999942 | 75999836 | ID=Msa0473390-mRNA-1:exon:19833;Parent=Msa0473390-mRNA-1 |
| chr3_3 | exon | 76001560 | 76001741 | 76001560 | ID=Msa0473390-mRNA-1:exon:19834;Parent=Msa0473390-mRNA-1 |
| chr3_3 | exon | 76001818 | 76002174 | 76001818 | ID=Msa0473390-mRNA-1:exon:19835;Parent=Msa0473390-mRNA-1 |
| chr3_3 | exon | 76002205 | 76002293 | 76002205 | ID=Msa0473390-mRNA-1:exon:19836;Parent=Msa0473390-mRNA-1 |
| chr3_3 | five_prime_UTR | 75998757 | 75998855 | 75998757 | ID=Msa0473390-mRNA-1:five_prime_utr;Parent=Msa0473390-mRNA-1 |
| chr3_3 | CDS | 75998856 | 75999112 | 75998856 | ID=Msa0473390-mRNA-1:cds;Parent=Msa0473390-mRNA-1 |
| chr3_3 | CDS | 75999836 | 75999942 | 75999836 | ID=Msa0473390-mRNA-1:cds;Parent=Msa0473390-mRNA-1 |
| chr3_3 | CDS | 76001560 | 76001741 | 76001560 | ID=Msa0473390-mRNA-1:cds;Parent=Msa0473390-mRNA-1 |
| chr3_3 | CDS | 76001818 | 76001973 | 76001818 | ID=Msa0473390-mRNA-1:cds;Parent=Msa0473390-mRNA-1 |
| chr3_3 | three_prime_UTR | 76001974 | 76002174 | 76001974 | ID=Msa0473390-mRNA-1:three_prime_utr;Parent=Msa0473390-mRNA-1 |
| chr3_3 | three_prime_UTR | 76002205 | 76002293 | 76002205 | ID=Msa0473390-mRNA-1:three_prime_utr;Parent=Msa0473390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
