Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517480 | XP_003602457.1 | 98.712 | 233 | 3 | 0 | 1 | 233 | 1 | 233 | 7.86e-164 | 462 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517480 | sp|P34091|RL6_MESCR | 81.034 | 232 | 44 | 0 | 2 | 233 | 3 | 234 | 1.10e-127 | 363 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517480 | G7J9R6 | 98.712 | 233 | 3 | 0 | 1 | 233 | 1 | 233 | 3.75e-164 | 462 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001760 | Msa0517480 | 0.883687 | 3.634648e-71 | -8.615850e-47 |
| Msa0003330 | Msa0517480 | 0.867388 | 1.419888e-65 | -8.615850e-47 |
| Msa0016350 | Msa0517480 | 0.804021 | 2.638707e-49 | -8.615850e-47 |
| Msa0021290 | Msa0517480 | 0.812891 | 3.373956e-51 | -8.615850e-47 |
| Msa0027590 | Msa0517480 | 0.902794 | 6.733412e-79 | -8.615850e-47 |
| Msa0037230 | Msa0517480 | 0.805336 | 1.402358e-49 | -8.615850e-47 |
| Msa0040220 | Msa0517480 | 0.811100 | 8.287338e-51 | -8.615850e-47 |
| Msa0072570 | Msa0517480 | 0.844734 | 6.292127e-59 | -8.615850e-47 |
| Msa0075350 | Msa0517480 | 0.859208 | 4.849190e-63 | -8.615850e-47 |
| Msa0087910 | Msa0517480 | 0.829101 | 6.215919e-55 | -8.615850e-47 |
| Msa0114600 | Msa0517480 | 0.831708 | 1.432540e-55 | -8.615850e-47 |
| Msa0128330 | Msa0517480 | 0.869213 | 3.664343e-66 | -8.615850e-47 |
| Msa0132460 | Msa0517480 | 0.852122 | 5.677920e-61 | -8.615850e-47 |
| Msa0134580 | Msa0517480 | 0.856428 | 3.238518e-62 | -8.615850e-47 |
| Msa0167860 | Msa0517480 | 0.891567 | 3.530589e-74 | -8.615850e-47 |
| Msa0168320 | Msa0517480 | 0.822948 | 1.802367e-53 | -8.615850e-47 |
| Msa0174580 | Msa0517480 | 0.854504 | 1.178130e-61 | -8.615850e-47 |
| Msa0182050 | Msa0517480 | 0.854159 | 1.482209e-61 | -8.615850e-47 |
| Msa0182100 | Msa0517480 | 0.825210 | 5.307290e-54 | -8.615850e-47 |
| Msa0191450 | Msa0517480 | 0.873300 | 1.636312e-67 | -8.615850e-47 |
| Msa0191550 | Msa0517480 | 0.865401 | 6.067632e-65 | -8.615850e-47 |
| Msa0192050 | Msa0517480 | 0.815301 | 9.918215e-52 | -8.615850e-47 |
| Msa0192300 | Msa0517480 | 0.838271 | 3.176119e-57 | -8.615850e-47 |
| Msa0192750 | Msa0517480 | 0.800921 | 1.148451e-48 | -8.615850e-47 |
| Msa0194940 | Msa0517480 | 0.836206 | 1.071684e-56 | -8.615850e-47 |
| Msa0195030 | Msa0517480 | 0.814773 | 1.298838e-51 | -8.615850e-47 |
| Msa0233550 | Msa0517480 | 0.800678 | 1.287454e-48 | -8.615850e-47 |
| Msa0235050 | Msa0517480 | 0.817025 | 4.084414e-52 | -8.615850e-47 |
| Msa0369410 | Msa0517480 | 0.831340 | 1.764739e-55 | -8.615850e-47 |
| Msa0371490 | Msa0517480 | 0.868597 | 5.801002e-66 | -8.615850e-47 |
| Msa0377520 | Msa0517480 | 0.935152 | 1.328876e-96 | -8.615850e-47 |
| Msa0382670 | Msa0517480 | 0.835335 | 1.781817e-56 | -8.615850e-47 |
| Msa0426090 | Msa0517480 | 0.869283 | 3.476034e-66 | -8.615850e-47 |
| Msa0426250 | Msa0517480 | 0.857253 | 1.851059e-62 | -8.615850e-47 |
| Msa0450150 | Msa0517480 | 0.803420 | 3.515746e-49 | -8.615850e-47 |
| Msa0463520 | Msa0517480 | 0.812890 | 3.376101e-51 | -8.615850e-47 |
| Msa0472480 | Msa0517480 | 0.867491 | 1.315825e-65 | -8.615850e-47 |
| Msa0473390 | Msa0517480 | 0.852167 | 5.511871e-61 | -8.615850e-47 |
| Msa0481520 | Msa0517480 | 0.886097 | 4.598333e-72 | -8.615850e-47 |
| Msa0239420 | Msa0517480 | 0.865213 | 6.951160e-65 | -8.615850e-47 |
| Msa0264640 | Msa0517480 | 0.810675 | 1.024634e-50 | -8.615850e-47 |
| Msa0277600 | Msa0517480 | 0.859553 | 3.819901e-63 | -8.615850e-47 |
| Msa0281330 | Msa0517480 | 0.827536 | 1.481791e-54 | -8.615850e-47 |
| Msa0281370 | Msa0517480 | 0.871406 | 7.004417e-67 | -8.615850e-47 |
| Msa0301220 | Msa0517480 | 0.821288 | 4.372284e-53 | -8.615850e-47 |
| Msa0301250 | Msa0517480 | 0.836062 | 1.166406e-56 | -8.615850e-47 |
| Msa0313060 | Msa0517480 | 0.858150 | 1.003729e-62 | -8.615850e-47 |
| Msa0315430 | Msa0517480 | 0.873755 | 1.150206e-67 | -8.615850e-47 |
| Msa0315660 | Msa0517480 | 0.806753 | 7.059198e-50 | -8.615850e-47 |
| Msa0335840 | Msa0517480 | 0.800614 | 1.326882e-48 | -8.615850e-47 |
| Msa0340560 | Msa0517480 | 0.819406 | 1.181011e-52 | -8.615850e-47 |
| Msa0511760 | Msa0517480 | 0.846909 | 1.614736e-59 | -8.615850e-47 |
| Msa0517480 | Msa0529900 | 0.821856 | 3.231944e-53 | -8.615850e-47 |
| Msa0517480 | Msa0540480 | 0.868709 | 5.336630e-66 | -8.615850e-47 |
| Msa0517480 | Msa0547920 | 0.842457 | 2.555926e-58 | -8.615850e-47 |
| Msa0517480 | Msa0573550 | 0.884669 | 1.573920e-71 | -8.615850e-47 |
| Msa0517480 | Msa0579830 | 0.800585 | 1.345051e-48 | -8.615850e-47 |
| Msa0517480 | Msa0582070 | 0.826876 | 2.132178e-54 | -8.615850e-47 |
| Msa0517480 | Msa0591050 | 0.832538 | 8.930732e-56 | -8.615850e-47 |
| Msa0517480 | Msa0597240 | 0.834157 | 3.524934e-56 | -8.615850e-47 |
| Msa0517480 | Msa0602900 | 0.819731 | 9.954510e-53 | -8.615850e-47 |
| Msa0517480 | Msa0605890 | 0.837670 | 4.532882e-57 | -8.615850e-47 |
| Msa0517480 | Msa0619230 | 0.865121 | 7.429328e-65 | -8.615850e-47 |
| Msa0517480 | Msa0622230 | 0.839525 | 1.504148e-57 | -8.615850e-47 |
| Msa0517480 | Msa0643960 | 0.827124 | 1.859892e-54 | -8.615850e-47 |
| Msa0517480 | Msa0649890 | 0.800528 | 1.381313e-48 | -8.615850e-47 |
| Msa0517480 | Msa0681220 | 0.809066 | 2.273530e-50 | -8.615850e-47 |
| Msa0517480 | Msa0686550 | 0.807639 | 4.580896e-50 | -8.615850e-47 |
| Msa0517480 | Msa0691760 | 0.803864 | 2.844685e-49 | -8.615850e-47 |
| Msa0517480 | Msa0694400 | 0.863024 | 3.343527e-64 | -8.615850e-47 |
| Msa0517480 | Msa0704860 | 0.840298 | 9.457712e-58 | -8.615850e-47 |
| Msa0517480 | Msa0705800 | 0.857113 | 2.035613e-62 | -8.615850e-47 |
| Msa0517480 | Msa0708630 | 0.850875 | 1.279350e-60 | -8.615850e-47 |
| Msa0517480 | Msa0741510 | 0.804831 | 1.788644e-49 | -8.615850e-47 |
| Msa0517480 | Msa0748350 | 0.847376 | 1.202281e-59 | -8.615850e-47 |
| Msa0517480 | Msa0758420 | 0.815840 | 7.523294e-52 | -8.615850e-47 |
| Msa0517480 | Msa0788380 | 0.849729 | 2.681943e-60 | -8.615850e-47 |
| Msa0517480 | Msa0790450 | 0.806497 | 7.993347e-50 | -8.615850e-47 |
| Msa0517480 | Msa0822580 | 0.839924 | 1.184105e-57 | -8.615850e-47 |
| Msa0517480 | Msa0838070 | 0.831350 | 1.754697e-55 | -8.615850e-47 |
| Msa0517480 | Msa0915540 | 0.834431 | 3.010194e-56 | -8.615850e-47 |
| Msa0517480 | Msa0929680 | 0.864053 | 1.603012e-64 | -8.615850e-47 |
| Msa0517480 | Msa0929700 | 0.893499 | 5.938121e-75 | -8.615850e-47 |
| Msa0517480 | Msa0930790 | 0.838431 | 2.888423e-57 | -8.615850e-47 |
| Msa0517480 | Msa1037290 | 0.800240 | 1.581349e-48 | -8.615850e-47 |
| Msa0517480 | Msa1040160 | 0.854841 | 9.406136e-62 | -8.615850e-47 |
| Msa0517480 | Msa1041680 | 0.813005 | 3.186378e-51 | -8.615850e-47 |
| Msa0517480 | Msa1050100 | 0.809305 | 2.020476e-50 | -8.615850e-47 |
| Msa0517480 | Msa1054280 | 0.826517 | 2.597153e-54 | -8.615850e-47 |
| Msa0517480 | Msa1068660 | 0.800532 | 1.378866e-48 | -8.615850e-47 |
| Msa0517480 | Msa1082170 | 0.860584 | 1.865004e-63 | -8.615850e-47 |
| Msa0517480 | Msa1083370 | 0.854650 | 1.068809e-61 | -8.615850e-47 |
| Msa0517480 | Msa1116940 | 0.803896 | 2.800972e-49 | -8.615850e-47 |
| Msa0517480 | Msa1126520 | 0.807859 | 4.115116e-50 | -8.615850e-47 |
| Msa0517480 | Msa1126690 | 0.815861 | 7.441021e-52 | -8.615850e-47 |
| Msa0517480 | Msa1156830 | 0.845093 | 5.034366e-59 | -8.615850e-47 |
| Msa0517480 | Msa1164150 | 0.822381 | 2.441728e-53 | -8.615850e-47 |
| Msa0517480 | Msa1165640 | 0.840908 | 6.549181e-58 | -8.615850e-47 |
| Msa0517480 | Msa1166570 | 0.815813 | 7.626167e-52 | -8.615850e-47 |
| Msa0517480 | Msa1180000 | 0.817201 | 3.728188e-52 | -8.615850e-47 |
| Msa0517480 | Msa1186030 | 0.883007 | 6.459314e-71 | -8.615850e-47 |
| Msa0517480 | Msa1218170 | 0.817560 | 3.095180e-52 | -8.615850e-47 |
| Msa0517480 | Msa1235950 | 0.831592 | 1.529915e-55 | -8.615850e-47 |
| Msa0517480 | Msa1235980 | 0.841388 | 4.898669e-58 | -8.615850e-47 |
| Msa0517480 | Msa1237040 | 0.826423 | 2.734945e-54 | -8.615850e-47 |
| Msa0517480 | Msa1240270 | 0.868532 | 6.090586e-66 | -8.615850e-47 |
| Msa0517480 | Msa1258540 | 0.808405 | 3.147512e-50 | -8.615850e-47 |
| Msa0517480 | Msa1284060 | 0.846786 | 1.745286e-59 | -8.615850e-47 |
| Msa0517480 | Msa1311400 | 0.804279 | 2.331233e-49 | -8.615850e-47 |
| Msa0517480 | Msa1316100 | 0.816500 | 5.357023e-52 | -8.615850e-47 |
| Msa0517480 | Msa1317390 | 0.835166 | 1.965483e-56 | -8.615850e-47 |
| Msa0517480 | Msa1347430 | 0.839405 | 1.615743e-57 | -8.615850e-47 |
| Msa0517480 | Msa1351020 | 0.863418 | 2.524821e-64 | -8.615850e-47 |
| Msa0517480 | Msa1351910 | 0.800656 | 1.301236e-48 | -8.615850e-47 |
| Msa0517480 | Msa1358710 | 0.836671 | 8.162048e-57 | -8.615850e-47 |
| Msa0517480 | Msa1368920 | 0.803279 | 3.760414e-49 | -8.615850e-47 |
| Msa0517480 | Msa1385480 | 0.840893 | 6.609249e-58 | -8.615850e-47 |
| Msa0517480 | Msa1390760 | 0.863185 | 2.981055e-64 | -8.615850e-47 |
| Msa0517480 | Msa1418770 | 0.821995 | 3.001802e-53 | -8.615850e-47 |
| Msa0517480 | Msa1432310 | 0.846737 | 1.800095e-59 | -8.615850e-47 |
| Msa0517480 | Msa1446410 | 0.856496 | 3.092975e-62 | -8.615850e-47 |
| Msa0517480 | Msa1449160 | 0.823157 | 1.610960e-53 | -8.615850e-47 |
| Msa0517480 | Msa1450560 | 0.811730 | 6.048720e-51 | -8.615850e-47 |
| Msa0517480 | Msa1463570 | 0.867183 | 1.651508e-65 | -8.615850e-47 |
| Msa0517480 | Msa1463580 | 0.818249 | 2.163136e-52 | -8.615850e-47 |
| Msa0517480 | Msa1465700 | 0.845903 | 3.037556e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517480 | MtrunA17_Chr3g0129031 | 98.712 | 233 | 3 | 0 | 1 | 233 | 1 | 233 | 7.23e-168 | 462 |
| Msa0517480 | MtrunA17_Chr3g0129231 | 97.854 | 233 | 5 | 0 | 1 | 233 | 1 | 233 | 6.78e-166 | 457 |
| Msa0517480 | MtrunA17_Chr5g0448021 | 84.615 | 234 | 35 | 1 | 1 | 233 | 1 | 234 | 4.30e-141 | 394 |
| Msa0517480 | MtrunA17_Chr8g0383131 | 84.615 | 169 | 25 | 1 | 1 | 168 | 1 | 169 | 1.48e-99 | 288 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517480 | AT1G74060.1 | 80.258 | 233 | 46 | 0 | 1 | 233 | 1 | 233 | 2.69e-122 | 347 |
| Msa0517480 | AT1G74050.1 | 80.258 | 233 | 46 | 0 | 1 | 233 | 1 | 233 | 5.26e-122 | 346 |
| Msa0517480 | AT1G18540.1 | 78.112 | 233 | 51 | 0 | 1 | 233 | 1 | 233 | 1.99e-114 | 327 |
Find 90 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTTGCCGGAAGATTTA+AGG | 0.122904 | 3_4:+69112460 | Msa0517480:CDS |
| CCGATACCCCTGATCAATTC+AGG | 0.224276 | 3_4:-69110678 | None:intergenic |
| TTTCTCAAGCAGCTTCCTTC+TGG | 0.237735 | 3_4:+69112497 | Msa0517480:CDS |
| TTTGATCATCCTTCTTCTCT+TGG | 0.241206 | 3_4:-69114095 | None:intergenic |
| TCAGGTCCATTCAAGATTAA+TGG | 0.243591 | 3_4:+69113794 | Msa0517480:intron |
| TTGATCATCCTTCTTCTCTT+GGG | 0.285928 | 3_4:-69114094 | None:intergenic |
| ACATGAGGAAAATCTTTCTT+AGG | 0.290832 | 3_4:-69114433 | None:intergenic |
| CACGAGGACAAAATATATTA+AGG | 0.307415 | 3_4:-69114371 | None:intergenic |
| TACTCTTGCAGTTCTTTGCT+TGG | 0.312751 | 3_4:-69110646 | None:intergenic |
| TCTGGACTTCTTCTCGTTAC+CGG | 0.334203 | 3_4:+69112515 | Msa0517480:CDS |
| TGTACCACAAGCGTGGGCTC+TGG | 0.340160 | 3_4:+69110721 | Msa0517480:CDS |
| ACCACCGTGCTTGGCTTTGA+TGG | 0.340487 | 3_4:-69110745 | None:intergenic |
| CTTCTTGCCGGAAGATTTAA+GGG | 0.340784 | 3_4:+69112461 | Msa0517480:CDS |
| TCTCTTTCCCTTAAATCTTC+CGG | 0.346788 | 3_4:-69112468 | None:intergenic |
| CCCATTGAGACGTGTGAATC+AGG | 0.352065 | 3_4:+69113820 | Msa0517480:CDS |
| AACCTGAGCTTAGTGGGCTT+TGG | 0.360630 | 3_4:-69110876 | None:intergenic |
| CGAGTTCTTTGAGGCAGATA+AGG | 0.375748 | 3_4:+69113955 | Msa0517480:CDS |
| ACTCTTGCAGTTCTTTGCTT+GGG | 0.381464 | 3_4:-69110645 | None:intergenic |
| TGGCTTCACACCTGCCTTCA+AGG | 0.382880 | 3_4:-69114193 | None:intergenic |
| TTCAGGGCTTCCATTACTCC+TGG | 0.384116 | 3_4:+69112425 | Msa0517480:intron |
| CTTCTGCTCTTTGCTTCCCT+CGG | 0.399398 | 3_4:-69110601 | None:intergenic |
| GCCGTAACCCTGAATTGATC+AGG | 0.416781 | 3_4:+69110670 | Msa0517480:CDS |
| AGAAGAATTAACACTGTTCC+AGG | 0.418258 | 3_4:-69112443 | None:intergenic |
| CCAAGGTAAGTCTTCAAGTC+TGG | 0.429639 | 3_4:-69114159 | None:intergenic |
| AACCGAAGAAATGTCTACTT+TGG | 0.432126 | 3_4:-69113864 | None:intergenic |
| GGCTTCTTCACATCGTCGGC+GGG | 0.438115 | 3_4:-69110834 | None:intergenic |
| ACAGTGTTAATTCTTCTTGC+CGG | 0.439034 | 3_4:+69112449 | Msa0517480:CDS |
| GAAGCAGCAGCTTTCAGCAA+TGG | 0.450063 | 3_4:+69110620 | Msa0517480:exon |
| CCCTGATCAATTCAGGGTTA+CGG | 0.450408 | 3_4:-69110671 | None:intergenic |
| GTGAATCAGGCATATGTTAT+CGG | 0.451583 | 3_4:+69113833 | Msa0517480:CDS |
| CAACGACGCATTGCTATTAG+TGG | 0.451844 | 3_4:-69110539 | None:intergenic |
| GCCTGATTCACACGTCTCAA+TGG | 0.452522 | 3_4:-69113821 | None:intergenic |
| CAAGTCTGGAACACTGTCAA+TGG | 0.454071 | 3_4:-69114145 | None:intergenic |
| CGTCGCTAAGGCTGCAGCTC+CGG | 0.457093 | 3_4:+69110788 | Msa0517480:CDS |
| AAGCATATTGTCTTCAACTA+GGG | 0.460091 | 3_4:+69110568 | Msa0517480:five_prime_UTR |
| GTACCACAAGCGTGGGCTCT+GGG | 0.465574 | 3_4:+69110722 | Msa0517480:CDS |
| CGATACCCCTGATCAATTCA+GGG | 0.465988 | 3_4:-69110677 | None:intergenic |
| TGATCATCCTTCTTCTCTTG+GGG | 0.470714 | 3_4:-69114093 | None:intergenic |
| AACTTAGGTGGCTTCTCGAC+CGG | 0.474725 | 3_4:-69110807 | None:intergenic |
| AACCAAAGTAGACATTTCTT+CGG | 0.476825 | 3_4:+69113862 | Msa0517480:CDS |
| GAGCCCACGCTTGTGGTACA+TGG | 0.479514 | 3_4:-69110718 | None:intergenic |
| GGGACTCCATTAATCTTGAA+TGG | 0.483082 | 3_4:-69113800 | None:intergenic |
| TGAAGACTTACCTTGGTGCC+AGG | 0.485144 | 3_4:+69114166 | Msa0517480:CDS |
| AGGGAAAGAACCACCGTGCT+TGG | 0.486637 | 3_4:-69110754 | None:intergenic |
| CCTGATTCACACGTCTCAAT+GGG | 0.486965 | 3_4:-69113820 | None:intergenic |
| CCTGAATTGATCAGGGGTAT+CGG | 0.492309 | 3_4:+69110678 | Msa0517480:CDS |
| GGGAGAGAGCGAGTTCTTTG+AGG | 0.505471 | 3_4:+69113946 | Msa0517480:CDS |
| AAAGCATATTGTCTTCAACT+AGG | 0.512599 | 3_4:+69110567 | Msa0517480:five_prime_UTR |
| ACCTGCCTTCAAGGAAAACC+TGG | 0.516282 | 3_4:-69114184 | None:intergenic |
| TAACACTGTTCCAGGAGTAA+TGG | 0.524055 | 3_4:-69112435 | None:intergenic |
| TTGGGCTGGCAAAGAGCAGA+GGG | 0.534239 | 3_4:+69110507 | None:intergenic |
| GGTGACGAACCTGAGCTTAG+TGG | 0.535903 | 3_4:-69110883 | None:intergenic |
| GATCAAAAGACTGTTGATGC+TGG | 0.542508 | 3_4:+69114111 | Msa0517480:CDS |
| TGGCCCAGAGCCCACGCTTG+TGG | 0.545998 | 3_4:-69110725 | None:intergenic |
| GATCATCCTTCTTCTCTTGG+GGG | 0.548827 | 3_4:-69114092 | None:intergenic |
| TCGTCGGCGGGGTAAAACTT+AGG | 0.552424 | 3_4:-69110822 | None:intergenic |
| GCTTTGGCTTGTGCTTGTTG+CGG | 0.553049 | 3_4:-69110860 | None:intergenic |
| CCGTAACCCTGAATTGATCA+GGG | 0.555623 | 3_4:+69110671 | Msa0517480:CDS |
| AACGACGCATTGCTATTAGT+GGG | 0.557323 | 3_4:-69110538 | None:intergenic |
| AGCCAAAGCCCACTAAGCTC+AGG | 0.559866 | 3_4:+69110874 | Msa0517480:CDS |
| CCAGACTTGAAGACTTACCT+TGG | 0.561891 | 3_4:+69114159 | Msa0517480:CDS |
| TCGTCACGATCCCGTCGCTA+AGG | 0.562513 | 3_4:+69110776 | Msa0517480:CDS |
| GGAGCTGCAGCCTTAGCGAC+GGG | 0.567898 | 3_4:-69110786 | None:intergenic |
| GGGGTATCGGAAAATACTCT+AGG | 0.568283 | 3_4:+69110691 | Msa0517480:CDS |
| TGGCTTCTTCACATCGTCGG+CGG | 0.569896 | 3_4:-69110835 | None:intergenic |
| GTGACGAACCTGAGCTTAGT+GGG | 0.585384 | 3_4:-69110882 | None:intergenic |
| CGGAGCTGCAGCCTTAGCGA+CGG | 0.590166 | 3_4:-69110787 | None:intergenic |
| GGCTTGTGCTTGTTGCGGAG+TGG | 0.594085 | 3_4:-69110855 | None:intergenic |
| TGATGACAAGTACTTCTCAA+AGG | 0.595456 | 3_4:+69113901 | Msa0517480:CDS |
| GTTGGGCTGGCAAAGAGCAG+AGG | 0.596216 | 3_4:+69110506 | None:intergenic |
| GTTCTTTGAGGCAGATAAGG+AGG | 0.599942 | 3_4:+69113958 | Msa0517480:CDS |
| CTCTAGAAGACCAACTCGTG+TGG | 0.601883 | 3_4:-69114213 | None:intergenic |
| GAGTGGCTTCTTCACATCGT+CGG | 0.602023 | 3_4:-69110838 | None:intergenic |
| TGGGCCATCAAAGCCAAGCA+CGG | 0.612265 | 3_4:+69110741 | Msa0517480:CDS |
| CTGCCATGTACCACAAGCGT+GGG | 0.619476 | 3_4:+69110715 | Msa0517480:CDS |
| GTAACGAGAAGAAGTCCAGA+AGG | 0.620622 | 3_4:-69112512 | None:intergenic |
| CACACGAGTTGGTCTTCTAG+AGG | 0.630211 | 3_4:+69114214 | Msa0517480:CDS |
| AGGTGTGAAGCCACACGAGT+TGG | 0.631048 | 3_4:+69114203 | Msa0517480:CDS |
| TTAGCGACGGGATCGTGACG+AGG | 0.633658 | 3_4:-69110774 | None:intergenic |
| GCTTCTTCACATCGTCGGCG+GGG | 0.637997 | 3_4:-69110833 | None:intergenic |
| TCTGCCATGTACCACAAGCG+TGG | 0.639753 | 3_4:+69110714 | Msa0517480:CDS |
| TCAAGGAAAACCTGGCACCA+AGG | 0.644709 | 3_4:-69114176 | None:intergenic |
| GGCTGGCAAAGAGCAGAGGG+AGG | 0.649035 | 3_4:+69110510 | None:intergenic |
| ACATAAAACGATGGTTCACG+AGG | 0.652845 | 3_4:-69114387 | None:intergenic |
| TCGGCGGGGTAAAACTTAGG+TGG | 0.654802 | 3_4:-69110819 | None:intergenic |
| TAGCGACGGGATCGTGACGA+GGG | 0.688534 | 3_4:-69110773 | None:intergenic |
| CGTAACCCTGAATTGATCAG+GGG | 0.696777 | 3_4:+69110672 | Msa0517480:CDS |
| CTAGGGTTTAGACTCACCGA+GGG | 0.706486 | 3_4:+69110585 | Msa0517480:five_prime_UTR |
| ACTAGGGTTTAGACTCACCG+AGG | 0.709213 | 3_4:+69110584 | Msa0517480:five_prime_UTR |
| GCCATCAAAGCCAAGCACGG+TGG | 0.747137 | 3_4:+69110744 | Msa0517480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATATACAAATTTTCATA+GGG | + | chr3_4:69111348-69111367 | Msa0517480:intron | 10.0% |
| !!! | TAAATCTTTTTGAATAAAGT+TGG | + | chr3_4:69110924-69110943 | Msa0517480:intron | 15.0% |
| !! | TATTGTTAATTATGATATGT+TGG | + | chr3_4:69111055-69111074 | Msa0517480:intron | 15.0% |
| !!! | GAAAATATACAAATTTTCAT+AGG | + | chr3_4:69111347-69111366 | Msa0517480:intron | 15.0% |
| !! | ATGATAAAATTTATGATGTT+AGG | + | chr3_4:69111811-69111830 | Msa0517480:intron | 15.0% |
| !!! | TTAAACTCTAATTGAAATTT+TGG | + | chr3_4:69112160-69112179 | Msa0517480:intron | 15.0% |
| !! | TTATCAATAGAAATGAACAA+CGG | - | chr3_4:69110907-69110926 | None:intergenic | 20.0% |
| !!! | TGTATTTTGAAGTTCAAATA+TGG | + | chr3_4:69111151-69111170 | Msa0517480:intron | 20.0% |
| !!! | AAATTTGAGATTTGATTCAT+TGG | + | chr3_4:69111294-69111313 | Msa0517480:intron | 20.0% |
| !!! | AATTTTGTTAGTGTCTATAT+TGG | + | chr3_4:69112343-69112362 | Msa0517480:intron | 20.0% |
| !! | TGAATGATTTATATAGTTCA+TGG | + | chr3_4:69112395-69112414 | Msa0517480:intron | 20.0% |
| !! | TAAACCAAAAAAACAATTAC+CGG | - | chr3_4:69112537-69112556 | None:intergenic | 20.0% |
| !!! | GTAATTGTTTTTTTGGTTTA+AGG | + | chr3_4:69112537-69112556 | Msa0517480:intron | 20.0% |
| !!! | CACAAATACGTAAATAATTT+TGG | - | chr3_4:69112663-69112682 | None:intergenic | 20.0% |
| !! | ATCAAATCTAAAGGTTTAAA+TGG | - | chr3_4:69112789-69112808 | None:intergenic | 20.0% |
| !! | TAATTTATTCTTTCTCAAGA+AGG | + | chr3_4:69113067-69113086 | Msa0517480:intron | 20.0% |
| !!! | TGGAGATATACATATAATTT+TGG | + | chr3_4:69113124-69113143 | Msa0517480:intron | 20.0% |
| !!! | TTTAGACATTATTTTGAAAC+TGG | - | chr3_4:69113362-69113381 | None:intergenic | 20.0% |
| !! | AAGAAAACAAGAAATAAGAA+AGG | + | chr3_4:69113504-69113523 | Msa0517480:intron | 20.0% |
| !! | AGAAAACAAGAAATAAGAAA+GGG | + | chr3_4:69113505-69113524 | Msa0517480:intron | 20.0% |
| ! | GTTAATTATGATATGTTGGA+CGG | + | chr3_4:69111059-69111078 | Msa0517480:intron | 25.0% |
| !!! | GAAATGGATTTTGTGAATAA+AGG | + | chr3_4:69111081-69111100 | Msa0517480:intron | 25.0% |
| !! | TGAAGTTCAAATATGGATTT+TGG | + | chr3_4:69111158-69111177 | Msa0517480:intron | 25.0% |
| !! | GAAGTTCAAATATGGATTTT+GGG | + | chr3_4:69111159-69111178 | Msa0517480:intron | 25.0% |
| !! | AAGTTCAAATATGGATTTTG+GGG | + | chr3_4:69111160-69111179 | Msa0517480:intron | 25.0% |
| !!! | TTGAGTTGTTTTAGAATTCT+TGG | + | chr3_4:69111226-69111245 | Msa0517480:intron | 25.0% |
| !!! | TGAGTTGTTTTAGAATTCTT+GGG | + | chr3_4:69111227-69111246 | Msa0517480:intron | 25.0% |
| !! | ATACAAATTTTCATAGGGTT+AGG | + | chr3_4:69111353-69111372 | Msa0517480:intron | 25.0% |
| !! | TACAAATTTTCATAGGGTTA+GGG | + | chr3_4:69111354-69111373 | Msa0517480:intron | 25.0% |
| ! | GTGAATATATGGAAAATATG+CGG | + | chr3_4:69111447-69111466 | Msa0517480:intron | 25.0% |
| ! | TGAATATATGGAAAATATGC+GGG | + | chr3_4:69111448-69111467 | Msa0517480:intron | 25.0% |
| !!! | TTTAAATGCTGTTTCGTTTT+TGG | + | chr3_4:69111775-69111794 | Msa0517480:intron | 25.0% |
| ! | AGGAATTGAAATTAAGTATC+AGG | + | chr3_4:69111831-69111850 | Msa0517480:intron | 25.0% |
| ! | AATTAAGTATCAGGAAAACA+TGG | + | chr3_4:69111840-69111859 | Msa0517480:intron | 25.0% |
| ! | ATTAAGTATCAGGAAAACAT+GGG | + | chr3_4:69111841-69111860 | Msa0517480:intron | 25.0% |
| !! | TTTTATTAACATGTGTTGAG+TGG | + | chr3_4:69111874-69111893 | Msa0517480:intron | 25.0% |
| ! | TTTATTAACATGTGTTGAGT+GGG | + | chr3_4:69111875-69111894 | Msa0517480:intron | 25.0% |
| !!! | ATAGACATTTTGAAGTTCTT+TGG | + | chr3_4:69112105-69112124 | Msa0517480:intron | 25.0% |
| ! | GTACAACAAGCAAATATATA+TGG | - | chr3_4:69112606-69112625 | None:intergenic | 25.0% |
| ! | TGTACTACAATCAAATCTAA+AGG | - | chr3_4:69112798-69112817 | None:intergenic | 25.0% |
| ! | TTGAATGTTTACACACATTA+TGG | - | chr3_4:69113012-69113031 | None:intergenic | 25.0% |
| ! | AAAATTGCTTCTTATACATG+TGG | + | chr3_4:69113044-69113063 | Msa0517480:intron | 25.0% |
| !! | AATTAAGTTTTTCACCTTTG+AGG | - | chr3_4:69113641-69113660 | None:intergenic | 25.0% |
| ! | AACAACAACATTGTAAAGAT+CGG | - | chr3_4:69114049-69114068 | None:intergenic | 25.0% |
| !! | GTTTTCATTCACAATTTTCT+TGG | + | chr3_4:69114303-69114322 | Msa0517480:three_prime_UTR | 25.0% |
| !! | AACTTGTATTTTATGTTCTC+TGG | + | chr3_4:69114342-69114361 | Msa0517480:three_prime_UTR | 25.0% |
| AAAGCATATTGTCTTCAACT+AGG | + | chr3_4:69110567-69110586 | Msa0517480:five_prime_UTR | 30.0% | |
| AAGCATATTGTCTTCAACTA+GGG | + | chr3_4:69110568-69110587 | Msa0517480:five_prime_UTR | 30.0% | |
| TACGAATTGAATATTACCAC+CGG | + | chr3_4:69110948-69110967 | Msa0517480:intron | 30.0% | |
| TAGATACACTTTGAATTTGC+CGG | - | chr3_4:69110970-69110989 | None:intergenic | 30.0% | |
| ! | TGGATTTTGTGAATAAAGGA+TGG | + | chr3_4:69111085-69111104 | Msa0517480:intron | 30.0% |
| ACTTCAAAATACAGTTAGCA+GGG | - | chr3_4:69111144-69111163 | None:intergenic | 30.0% | |
| AACTTCAAAATACAGTTAGC+AGG | - | chr3_4:69111145-69111164 | None:intergenic | 30.0% | |
| ! | GGTTTGATTTATGTGTGATT+AGG | + | chr3_4:69111181-69111200 | Msa0517480:intron | 30.0% |
| TTAGGAATTGTATTCGTGTT+TGG | + | chr3_4:69111199-69111218 | Msa0517480:intron | 30.0% | |
| TAGGAATTGTATTCGTGTTT+GGG | + | chr3_4:69111200-69111219 | Msa0517480:intron | 30.0% | |
| TGATATTAAACACGCACATA+GGG | + | chr3_4:69111391-69111410 | Msa0517480:intron | 30.0% | |
| CGAATCTTTCTGTGAATATA+TGG | + | chr3_4:69111436-69111455 | Msa0517480:intron | 30.0% | |
| CAAGCTAAACAACATCAAAA+AGG | - | chr3_4:69111652-69111671 | None:intergenic | 30.0% | |
| TAAACCAATAGAGTGTACTA+AGG | - | chr3_4:69111731-69111750 | None:intergenic | 30.0% | |
| !! | TTAGTACACTCTATTGGTTT+AGG | + | chr3_4:69111730-69111749 | Msa0517480:intron | 30.0% |
| TTATTAACATGTGTTGAGTG+GGG | + | chr3_4:69111876-69111895 | Msa0517480:intron | 30.0% | |
| TATCAACATTATGGATATGC+CGG | + | chr3_4:69112012-69112031 | Msa0517480:intron | 30.0% | |
| !!! | TAGTTCATGGTTTTGTTTTC+AGG | + | chr3_4:69112408-69112427 | Msa0517480:intron | 30.0% |
| !!! | AGTTCATGGTTTTGTTTTCA+GGG | + | chr3_4:69112409-69112428 | Msa0517480:intron | 30.0% |
| !!! | GTTACCGGTAATTGTTTTTT+TGG | + | chr3_4:69112530-69112549 | Msa0517480:intron | 30.0% |
| TTCATGTTATTACCTGAGAT+TGG | + | chr3_4:69112570-69112589 | Msa0517480:intron | 30.0% | |
| TGCATCATCAATATAACTCA+TGG | - | chr3_4:69112628-69112647 | None:intergenic | 30.0% | |
| GATTGAAACTAAATCAACCT+TGG | + | chr3_4:69112682-69112701 | Msa0517480:intron | 30.0% | |
| ! | AAGTAATGACTTGTGAGATA+TGG | + | chr3_4:69112739-69112758 | Msa0517480:intron | 30.0% |
| ACAATAGAGACTGTCATATT+TGG | + | chr3_4:69112762-69112781 | Msa0517480:intron | 30.0% | |
| GAAGAAAAAGATAGTCCTAT+AGG | + | chr3_4:69112821-69112840 | Msa0517480:intron | 30.0% | |
| AATGTAGCTAAGGATGATTA+CGG | - | chr3_4:69113155-69113174 | None:intergenic | 30.0% | |
| AGTAAATGTGAATGTAGCTA+AGG | - | chr3_4:69113165-69113184 | None:intergenic | 30.0% | |
| ! | CATGAGTCTACATTACATTT+TGG | + | chr3_4:69113243-69113262 | Msa0517480:intron | 30.0% |
| ! | TTTTCTTACATTACAGCTTC+GGG | - | chr3_4:69113491-69113510 | None:intergenic | 30.0% |
| ! | GTTTTCTTACATTACAGCTT+CGG | - | chr3_4:69113492-69113511 | None:intergenic | 30.0% |
| AAAGGGTGAAAAAGCAAATA+TGG | + | chr3_4:69113522-69113541 | Msa0517480:intron | 30.0% | |
| AAGGGTGAAAAAGCAAATAT+GGG | + | chr3_4:69113523-69113542 | Msa0517480:intron | 30.0% | |
| AAATATGGGGGTTAATGATA+AGG | + | chr3_4:69113537-69113556 | Msa0517480:intron | 30.0% | |
| TAATGATAAGGAAAGTAGGT+AGG | + | chr3_4:69113549-69113568 | Msa0517480:intron | 30.0% | |
| GAGAATGAACAAATGAAGAT+TGG | - | chr3_4:69113768-69113787 | None:intergenic | 30.0% | |
| AACCAAAGTAGACATTTCTT+CGG | + | chr3_4:69113862-69113881 | Msa0517480:CDS | 30.0% | |
| !!! | GAGCACTTTTTTATCCTAAA+AGG | - | chr3_4:69114073-69114092 | None:intergenic | 30.0% |
| TGACAGACAACAAAAATCAA+GGG | - | chr3_4:69114269-69114288 | None:intergenic | 30.0% | |
| TTGACAGACAACAAAAATCA+AGG | - | chr3_4:69114270-69114289 | None:intergenic | 30.0% | |
| !! | TTTTTGTTGTCTGTCAAACT+TGG | + | chr3_4:69114273-69114292 | Msa0517480:three_prime_UTR | 30.0% |
| CACGAGGACAAAATATATTA+AGG | - | chr3_4:69114374-69114393 | None:intergenic | 30.0% | |
| GCTTCAAAAACATAAAACGA+TGG | - | chr3_4:69114399-69114418 | None:intergenic | 30.0% | |
| !!! | TGTTTTTGAAGCTTTATTGC+TGG | + | chr3_4:69114407-69114426 | Msa0517480:three_prime_UTR | 30.0% |
| ACATGAGGAAAATCTTTCTT+AGG | - | chr3_4:69114436-69114455 | None:intergenic | 30.0% | |
| TATGATATGTTGGACGGAAA+TGG | + | chr3_4:69111065-69111084 | Msa0517480:intron | 35.0% | |
| GTGAATAAAGGATGGAGAAA+CGG | + | chr3_4:69111093-69111112 | Msa0517480:intron | 35.0% | |
| TGAATAAAGGATGGAGAAAC+GGG | + | chr3_4:69111094-69111113 | Msa0517480:intron | 35.0% | |
| ! | AAAGTATGGAAGTATGGTGT+AGG | + | chr3_4:69111117-69111136 | Msa0517480:intron | 35.0% |
| GTGATATTAAACACGCACAT+AGG | + | chr3_4:69111390-69111409 | Msa0517480:intron | 35.0% | |
| ! | TCAAGACACTGACTATTAGT+TGG | - | chr3_4:69111697-69111716 | None:intergenic | 35.0% |
| AATAGTCAGTGTCTTGATTG+TGG | + | chr3_4:69111700-69111719 | Msa0517480:intron | 35.0% | |
| TATTAACATGTGTTGAGTGG+GGG | + | chr3_4:69111877-69111896 | Msa0517480:intron | 35.0% | |
| !!! | TGAGTGGGGGATATTTTTTT+TGG | + | chr3_4:69111890-69111909 | Msa0517480:intron | 35.0% |
| !!! | GAGTGGGGGATATTTTTTTT+GGG | + | chr3_4:69111891-69111910 | Msa0517480:intron | 35.0% |
| !!! | GGGATATTTTTTTTGGGTAC+CGG | + | chr3_4:69111897-69111916 | Msa0517480:intron | 35.0% |
| !!! | GGATATTTTTTTTGGGTACC+GGG | + | chr3_4:69111898-69111917 | Msa0517480:intron | 35.0% |
| !!! | GATATTTTTTTTGGGTACCG+GGG | + | chr3_4:69111899-69111918 | Msa0517480:intron | 35.0% |
| !!! | ATATTTTTTTTGGGTACCGG+GGG | + | chr3_4:69111900-69111919 | Msa0517480:intron | 35.0% |
| AGAAGAATTAACACTGTTCC+AGG | - | chr3_4:69112446-69112465 | None:intergenic | 35.0% | |
| ACAGTGTTAATTCTTCTTGC+CGG | + | chr3_4:69112449-69112468 | Msa0517480:CDS | 35.0% | |
| TCTCTTTCCCTTAAATCTTC+CGG | - | chr3_4:69112471-69112490 | None:intergenic | 35.0% | |
| GGAACATAAAATACTGACCA+AGG | - | chr3_4:69112702-69112721 | None:intergenic | 35.0% | |
| ! | TGGTCAGTATTTTATGTTCC+AGG | + | chr3_4:69112702-69112721 | Msa0517480:intron | 35.0% |
| ! | GGTCAGTATTTTATGTTCCA+GGG | + | chr3_4:69112703-69112722 | Msa0517480:intron | 35.0% |
| CAACTCACTTTCTAACCTAT+AGG | - | chr3_4:69112839-69112858 | None:intergenic | 35.0% | |
| TGTGTTTGGTTGAAAAGTGA+AGG | + | chr3_4:69112886-69112905 | Msa0517480:intron | 35.0% | |
| CTTCTGCTTCTTAGTAAACA+TGG | + | chr3_4:69113104-69113123 | Msa0517480:intron | 35.0% | |
| TACAAGAAGGGTAGATGAAA+TGG | - | chr3_4:69113222-69113241 | None:intergenic | 35.0% | |
| GTAGACTCATGATACAAGAA+GGG | - | chr3_4:69113234-69113253 | None:intergenic | 35.0% | |
| TGTAGACTCATGATACAAGA+AGG | - | chr3_4:69113235-69113254 | None:intergenic | 35.0% | |
| AGTAAGGGATCTCAATAGTT+GGG | + | chr3_4:69113303-69113322 | Msa0517480:intron | 35.0% | |
| TTAAGCCACAATGAGTTGTT+CGG | - | chr3_4:69113335-69113354 | None:intergenic | 35.0% | |
| TTAGTTGGATGAAGATCAGA+TGG | - | chr3_4:69113393-69113412 | None:intergenic | 35.0% | |
| TGTGAATCTCAGTCATTAGT+TGG | - | chr3_4:69113408-69113427 | None:intergenic | 35.0% | |
| ! | ATCAAACTTATCGTTCTGAG+CGG | + | chr3_4:69113450-69113469 | Msa0517480:intron | 35.0% |
| TTTCTTACATTACAGCTTCG+GGG | - | chr3_4:69113490-69113509 | None:intergenic | 35.0% | |
| AGGGTGAAAAAGCAAATATG+GGG | + | chr3_4:69113524-69113543 | Msa0517480:intron | 35.0% | |
| GGGTTAATGATAAGGAAAGT+AGG | + | chr3_4:69113545-69113564 | Msa0517480:intron | 35.0% | |
| AAAGTTGAACAACAACCCAA+TGG | - | chr3_4:69113598-69113617 | None:intergenic | 35.0% | |
| TCAACTTTGACAAGCAAAAC+AGG | + | chr3_4:69113610-69113629 | Msa0517480:intron | 35.0% | |
| GAGACTAAAGAAGGTCTTTA+AGG | - | chr3_4:69113732-69113751 | None:intergenic | 35.0% | |
| ATTAATCTTGAATGGACCTG+AGG | - | chr3_4:69113795-69113814 | None:intergenic | 35.0% | |
| TCAGGTCCATTCAAGATTAA+TGG | + | chr3_4:69113794-69113813 | Msa0517480:intron | 35.0% | |
| GTGAATCAGGCATATGTTAT+CGG | + | chr3_4:69113833-69113852 | Msa0517480:CDS | 35.0% | |
| AACCGAAGAAATGTCTACTT+TGG | - | chr3_4:69113867-69113886 | None:intergenic | 35.0% | |
| TGATGACAAGTACTTCTCAA+AGG | + | chr3_4:69113901-69113920 | Msa0517480:CDS | 35.0% | |
| ATCCCAGAAAAAGACTAAGA+AGG | + | chr3_4:69113925-69113944 | Msa0517480:CDS | 35.0% | |
| TCCCAGAAAAAGACTAAGAA+GGG | + | chr3_4:69113926-69113945 | Msa0517480:CDS | 35.0% | |
| !! | TCCCTTCTTAGTCTTTTTCT+GGG | - | chr3_4:69113930-69113949 | None:intergenic | 35.0% |
| TTGTAAAGATCGGCATACAA+AGG | - | chr3_4:69114039-69114058 | None:intergenic | 35.0% | |
| !! | CAATGTTGTTGTTGCCTTTT+AGG | + | chr3_4:69114056-69114075 | Msa0517480:intron | 35.0% |
| TTGATCATCCTTCTTCTCTT+GGG | - | chr3_4:69114097-69114116 | None:intergenic | 35.0% | |
| TTTGATCATCCTTCTTCTCT+TGG | - | chr3_4:69114098-69114117 | None:intergenic | 35.0% | |
| ! | TCAGTTTTGCAAAGTACATG+AGG | - | chr3_4:69114451-69114470 | None:intergenic | 35.0% |
| ! | AACGACGCATTGCTATTAGT+GGG | - | chr3_4:69110541-69110560 | None:intergenic | 40.0% |
| ACTCTTGCAGTTCTTTGCTT+GGG | - | chr3_4:69110648-69110667 | None:intergenic | 40.0% | |
| TACTCTTGCAGTTCTTTGCT+TGG | - | chr3_4:69110649-69110668 | None:intergenic | 40.0% | |
| ATACACTTTGAATTTGCCGG+TGG | - | chr3_4:69110967-69110986 | None:intergenic | 40.0% | |
| ! | AACGGGAAAGTATGGAAGTA+TGG | + | chr3_4:69111111-69111130 | Msa0517480:intron | 40.0% |
| TGCTTTCGTCCATGTGTTTA+CGG | + | chr3_4:69111491-69111510 | Msa0517480:intron | 40.0% | |
| !! | CTTTCTGAGCTTTGTTAGTC+TGG | + | chr3_4:69111569-69111588 | Msa0517480:intron | 40.0% |
| !! | AGCTTTGTTAGTCTGGTGTT+AGG | + | chr3_4:69111576-69111595 | Msa0517480:intron | 40.0% |
| !! | TTTAGCTTGTGTGCTCTGTT+TGG | + | chr3_4:69111663-69111682 | Msa0517480:intron | 40.0% |
| CCAATAGAGTGTACTAAGGA+TGG | - | chr3_4:69111727-69111746 | None:intergenic | 40.0% | |
| CCATCCTTAGTACACTCTAT+TGG | + | chr3_4:69111724-69111743 | Msa0517480:intron | 40.0% | |
| !! | GTACACTCTATTGGTTTAGG+TGG | + | chr3_4:69111733-69111752 | Msa0517480:intron | 40.0% |
| AGTATCAGGAAAACATGGGT+TGG | + | chr3_4:69111845-69111864 | Msa0517480:intron | 40.0% | |
| !!! | TATTTTTTTTGGGTACCGGG+GGG | + | chr3_4:69111901-69111920 | Msa0517480:intron | 40.0% |
| CTCAAAGAGACAAGGAATGA+TGG | + | chr3_4:69111948-69111967 | Msa0517480:intron | 40.0% | |
| ACAGGCAGCTATCAACATTA+TGG | + | chr3_4:69112003-69112022 | Msa0517480:intron | 40.0% | |
| ! | TTTTCCTGTTGTTCGTCTCA+GGG | + | chr3_4:69112059-69112078 | Msa0517480:intron | 40.0% |
| TAACACTGTTCCAGGAGTAA+TGG | - | chr3_4:69112438-69112457 | None:intergenic | 40.0% | |
| TCTTCTTGCCGGAAGATTTA+AGG | + | chr3_4:69112460-69112479 | Msa0517480:CDS | 40.0% | |
| CTTCTTGCCGGAAGATTTAA+GGG | + | chr3_4:69112461-69112480 | Msa0517480:CDS | 40.0% | |
| GGTTACATACAACCAATCTC+AGG | - | chr3_4:69112585-69112604 | None:intergenic | 40.0% | |
| ACTTGTCTAACTGATATCCC+TGG | - | chr3_4:69112723-69112742 | None:intergenic | 40.0% | |
| GTTAGAAAGTGAGTTGCTGT+TGG | + | chr3_4:69112843-69112862 | Msa0517480:intron | 40.0% | |
| GTTCGGTAAATCACTGTGTT+TGG | + | chr3_4:69112872-69112891 | Msa0517480:intron | 40.0% | |
| ! | CATGTTTTCCTTGACTGTTG+CGG | - | chr3_4:69113278-69113297 | None:intergenic | 40.0% |
| AGGAAAACATGCAGTCAGTA+AGG | + | chr3_4:69113287-69113306 | Msa0517480:intron | 40.0% | |
| GGAAAACATGCAGTCAGTAA+GGG | + | chr3_4:69113288-69113307 | Msa0517480:intron | 40.0% | |
| CAGTAAGGGATCTCAATAGT+TGG | + | chr3_4:69113302-69113321 | Msa0517480:intron | 40.0% | |
| GCTCAGAACGATAAGTTTGA+TGG | - | chr3_4:69113451-69113470 | None:intergenic | 40.0% | |
| GGGTGAAAAAGCAAATATGG+GGG | + | chr3_4:69113525-69113544 | Msa0517480:intron | 40.0% | |
| ACAACAATGCAACAGCCATT+GGG | + | chr3_4:69113580-69113599 | Msa0517480:intron | 40.0% | |
| CAAAACAGGACAAACCTCAA+AGG | + | chr3_4:69113624-69113643 | Msa0517480:intron | 40.0% | |
| AGATGAGAGGAGACTAAAGA+AGG | - | chr3_4:69113741-69113760 | None:intergenic | 40.0% | |
| TTGTTCATTCTCACTTCCTC+AGG | + | chr3_4:69113776-69113795 | Msa0517480:intron | 40.0% | |
| GGGACTCCATTAATCTTGAA+TGG | - | chr3_4:69113803-69113822 | None:intergenic | 40.0% | |
| !! | CTCCCTTCTTAGTCTTTTTC+TGG | - | chr3_4:69113931-69113950 | None:intergenic | 40.0% |
| TGATCATCCTTCTTCTCTTG+GGG | - | chr3_4:69114096-69114115 | None:intergenic | 40.0% | |
| GATCAAAAGACTGTTGATGC+TGG | + | chr3_4:69114111-69114130 | Msa0517480:CDS | 40.0% | |
| ACATAAAACGATGGTTCACG+AGG | - | chr3_4:69114390-69114409 | None:intergenic | 40.0% | |
| ! | CAACGACGCATTGCTATTAG+TGG | - | chr3_4:69110542-69110561 | None:intergenic | 45.0% |
| CCCTGATCAATTCAGGGTTA+CGG | - | chr3_4:69110674-69110693 | None:intergenic | 45.0% | |
| CCGTAACCCTGAATTGATCA+GGG | + | chr3_4:69110671-69110690 | Msa0517480:CDS | 45.0% | |
| CGTAACCCTGAATTGATCAG+GGG | + | chr3_4:69110672-69110691 | Msa0517480:CDS | 45.0% | |
| CGATACCCCTGATCAATTCA+GGG | - | chr3_4:69110680-69110699 | None:intergenic | 45.0% | |
| ! | CCTGAATTGATCAGGGGTAT+CGG | + | chr3_4:69110678-69110697 | Msa0517480:CDS | 45.0% |
| !! | GGGGTATCGGAAAATACTCT+AGG | + | chr3_4:69110691-69110710 | Msa0517480:CDS | 45.0% |
| GATGGAGAAACGGGAAAGTA+TGG | + | chr3_4:69111103-69111122 | Msa0517480:intron | 45.0% | |
| GTAAACACATGGACGAAAGC+AGG | - | chr3_4:69111492-69111511 | None:intergenic | 45.0% | |
| TTCGTCCATGTGTTTACGGT+CGG | + | chr3_4:69111495-69111514 | Msa0517480:intron | 45.0% | |
| GAAAAACAACACGAGTGCGA+CGG | - | chr3_4:69111544-69111563 | None:intergenic | 45.0% | |
| !! | AGGAAAACATGGGTTGGCTT+TGG | + | chr3_4:69111851-69111870 | Msa0517480:intron | 45.0% |
| !!! | ATTTTTTTTGGGTACCGGGG+GGG | + | chr3_4:69111902-69111921 | Msa0517480:intron | 45.0% |
| GGTTCAGTCAAGTACGATGT+TGG | + | chr3_4:69111925-69111944 | Msa0517480:intron | 45.0% | |
| !! | GATGTTGGCTCAAAGAGACA+AGG | + | chr3_4:69111940-69111959 | Msa0517480:intron | 45.0% |
| CTCACTGCGAAGTATGGATT+GGG | - | chr3_4:69111976-69111995 | None:intergenic | 45.0% | |
| CAACATTATGGATATGCCGG+TGG | + | chr3_4:69112015-69112034 | Msa0517480:intron | 45.0% | |
| AACAACAGGAAAAGGAGGAG+GGG | - | chr3_4:69112052-69112071 | None:intergenic | 45.0% | |
| GAACAACAGGAAAAGGAGGA+GGG | - | chr3_4:69112053-69112072 | None:intergenic | 45.0% | |
| AGACGAACAACAGGAAAAGG+AGG | - | chr3_4:69112057-69112076 | None:intergenic | 45.0% | |
| CTGAGACGAACAACAGGAAA+AGG | - | chr3_4:69112060-69112079 | None:intergenic | 45.0% | |
| ! | CTTTTCCTGTTGTTCGTCTC+AGG | + | chr3_4:69112058-69112077 | Msa0517480:intron | 45.0% |
| TTTCCTGTTGTTCGTCTCAG+GGG | + | chr3_4:69112060-69112079 | Msa0517480:intron | 45.0% | |
| TTTCTCAAGCAGCTTCCTTC+TGG | + | chr3_4:69112497-69112516 | Msa0517480:CDS | 45.0% | |
| GTAACGAGAAGAAGTCCAGA+AGG | - | chr3_4:69112515-69112534 | None:intergenic | 45.0% | |
| TCTGGACTTCTTCTCGTTAC+CGG | + | chr3_4:69112515-69112534 | Msa0517480:CDS | 45.0% | |
| ! | AGAAAGTGAGTTGCTGTTGG+AGG | + | chr3_4:69112846-69112865 | Msa0517480:intron | 45.0% |
| ! | GAAAGTGAGTTGCTGTTGGA+GGG | + | chr3_4:69112847-69112866 | Msa0517480:intron | 45.0% |
| ! | AAAGTGAGTTGCTGTTGGAG+GGG | + | chr3_4:69112848-69112867 | Msa0517480:intron | 45.0% |
| GAAGACCGAACAACTCATTG+TGG | + | chr3_4:69113327-69113346 | Msa0517480:intron | 45.0% | |
| CACAACAATGCAACAGCCAT+TGG | + | chr3_4:69113579-69113598 | Msa0517480:intron | 45.0% | |
| ! | GAAGATTGGTCAGAGATGAG+AGG | - | chr3_4:69113754-69113773 | None:intergenic | 45.0% |
| CCTGATTCACACGTCTCAAT+GGG | - | chr3_4:69113823-69113842 | None:intergenic | 45.0% | |
| !! | CGAGTTCTTTGAGGCAGATA+AGG | + | chr3_4:69113955-69113974 | Msa0517480:CDS | 45.0% |
| !! | GTTCTTTGAGGCAGATAAGG+AGG | + | chr3_4:69113958-69113977 | Msa0517480:CDS | 45.0% |
| GATCATCCTTCTTCTCTTGG+GGG | - | chr3_4:69114095-69114114 | None:intergenic | 45.0% | |
| ! | CAAGTCTGGAACACTGTCAA+TGG | - | chr3_4:69114148-69114167 | None:intergenic | 45.0% |
| CCAAGGTAAGTCTTCAAGTC+TGG | - | chr3_4:69114162-69114181 | None:intergenic | 45.0% | |
| CCAGACTTGAAGACTTACCT+TGG | + | chr3_4:69114159-69114178 | Msa0517480:CDS | 45.0% | |
| ACTAGGGTTTAGACTCACCG+AGG | + | chr3_4:69110584-69110603 | Msa0517480:five_prime_UTR | 50.0% | |
| CTAGGGTTTAGACTCACCGA+GGG | + | chr3_4:69110585-69110604 | Msa0517480:five_prime_UTR | 50.0% | |
| CTTCTGCTCTTTGCTTCCCT+CGG | - | chr3_4:69110604-69110623 | None:intergenic | 50.0% | |
| GAAGCAGCAGCTTTCAGCAA+TGG | + | chr3_4:69110620-69110639 | Msa0517480:exon | 50.0% | |
| GCCGTAACCCTGAATTGATC+AGG | + | chr3_4:69110670-69110689 | Msa0517480:CDS | 50.0% | |
| CCGATACCCCTGATCAATTC+AGG | - | chr3_4:69110681-69110700 | None:intergenic | 50.0% | |
| AACTTAGGTGGCTTCTCGAC+CGG | - | chr3_4:69110810-69110829 | None:intergenic | 50.0% | |
| GAGTGGCTTCTTCACATCGT+CGG | - | chr3_4:69110841-69110860 | None:intergenic | 50.0% | |
| !! | GCTTTGGCTTGTGCTTGTTG+CGG | - | chr3_4:69110863-69110882 | None:intergenic | 50.0% |
| !! | AACCTGAGCTTAGTGGGCTT+TGG | - | chr3_4:69110879-69110898 | None:intergenic | 50.0% |
| GTGACGAACCTGAGCTTAGT+GGG | - | chr3_4:69110885-69110904 | None:intergenic | 50.0% | |
| TCCATGTGTTTACGGTCGGT+AGG | + | chr3_4:69111499-69111518 | Msa0517480:intron | 50.0% | |
| ACCTACCGACCGTAAACACA+TGG | - | chr3_4:69111503-69111522 | None:intergenic | 50.0% | |
| !!! | TTTTTTTTGGGTACCGGGGG+GGG | + | chr3_4:69111903-69111922 | Msa0517480:intron | 50.0% |
| GCTCACTGCGAAGTATGGAT+TGG | - | chr3_4:69111977-69111996 | None:intergenic | 50.0% | |
| CATTATGGATATGCCGGTGG+CGG | + | chr3_4:69112018-69112037 | Msa0517480:intron | 50.0% | |
| ACAACAGGAAAAGGAGGAGG+GGG | - | chr3_4:69112051-69112070 | None:intergenic | 50.0% | |
| CGAACAACAGGAAAAGGAGG+AGG | - | chr3_4:69112054-69112073 | None:intergenic | 50.0% | |
| TTCCTGTTGTTCGTCTCAGG+GGG | + | chr3_4:69112061-69112080 | Msa0517480:intron | 50.0% | |
| TTCAGGGCTTCCATTACTCC+TGG | + | chr3_4:69112425-69112444 | Msa0517480:intron | 50.0% | |
| !! | CATCGATTCCGCAACAGTCA+AGG | + | chr3_4:69113267-69113286 | Msa0517480:intron | 50.0% |
| GGCTGTTGCATTGTTGTGCA+AGG | - | chr3_4:69113577-69113596 | None:intergenic | 50.0% | |
| CCCATTGAGACGTGTGAATC+AGG | + | chr3_4:69113820-69113839 | Msa0517480:CDS | 50.0% | |
| GCCTGATTCACACGTCTCAA+TGG | - | chr3_4:69113824-69113843 | None:intergenic | 50.0% | |
| !! | TGAAGACTTACCTTGGTGCC+AGG | + | chr3_4:69114166-69114185 | Msa0517480:CDS | 50.0% |
| TCAAGGAAAACCTGGCACCA+AGG | - | chr3_4:69114179-69114198 | None:intergenic | 50.0% | |
| !! | TGGTGCCAGGTTTTCCTTGA+AGG | + | chr3_4:69114179-69114198 | Msa0517480:CDS | 50.0% |
| ACCTGCCTTCAAGGAAAACC+TGG | - | chr3_4:69114187-69114206 | None:intergenic | 50.0% | |
| ! | CTCTAGAAGACCAACTCGTG+TGG | - | chr3_4:69114216-69114235 | None:intergenic | 50.0% |
| !! | CACACGAGTTGGTCTTCTAG+AGG | + | chr3_4:69114214-69114233 | Msa0517480:CDS | 50.0% |
| TCTGCCATGTACCACAAGCG+TGG | + | chr3_4:69110714-69110733 | Msa0517480:CDS | 55.0% | |
| CTGCCATGTACCACAAGCGT+GGG | + | chr3_4:69110715-69110734 | Msa0517480:CDS | 55.0% | |
| TGGGCCATCAAAGCCAAGCA+CGG | + | chr3_4:69110741-69110760 | Msa0517480:CDS | 55.0% | |
| !! | ACCACCGTGCTTGGCTTTGA+TGG | - | chr3_4:69110748-69110767 | None:intergenic | 55.0% |
| AGGGAAAGAACCACCGTGCT+TGG | - | chr3_4:69110757-69110776 | None:intergenic | 55.0% | |
| TCGGCGGGGTAAAACTTAGG+TGG | - | chr3_4:69110822-69110841 | None:intergenic | 55.0% | |
| TCGTCGGCGGGGTAAAACTT+AGG | - | chr3_4:69110825-69110844 | None:intergenic | 55.0% | |
| TGGCTTCTTCACATCGTCGG+CGG | - | chr3_4:69110838-69110857 | None:intergenic | 55.0% | |
| AGCCAAAGCCCACTAAGCTC+AGG | + | chr3_4:69110874-69110893 | Msa0517480:CDS | 55.0% | |
| GGTGACGAACCTGAGCTTAG+TGG | - | chr3_4:69110886-69110905 | None:intergenic | 55.0% | |
| CACATGGACGAAAGCAGGTC+AGG | - | chr3_4:69111487-69111506 | None:intergenic | 55.0% | |
| !!! | TTTTTTTGGGTACCGGGGGG+GGG | + | chr3_4:69111904-69111923 | Msa0517480:intron | 55.0% |
| CCATACTTCGCAGTGAGCAG+CGG | + | chr3_4:69111979-69111998 | Msa0517480:intron | 55.0% | |
| CATACTTCGCAGTGAGCAGC+GGG | + | chr3_4:69111980-69111999 | Msa0517480:intron | 55.0% | |
| !! | GTTGCTGTTGGAGGGGTGTT+CGG | + | chr3_4:69112855-69112874 | Msa0517480:intron | 55.0% |
| GGGAGAGAGCGAGTTCTTTG+AGG | + | chr3_4:69113946-69113965 | Msa0517480:CDS | 55.0% | |
| AGTGCTCCCCCAAGAGAAGA+AGG | + | chr3_4:69114086-69114105 | Msa0517480:CDS | 55.0% | |
| ! | GCCAGGTTTTCCTTGAAGGC+AGG | + | chr3_4:69114183-69114202 | Msa0517480:CDS | 55.0% |
| TGGCTTCACACCTGCCTTCA+AGG | - | chr3_4:69114196-69114215 | None:intergenic | 55.0% | |
| AGGTGTGAAGCCACACGAGT+TGG | + | chr3_4:69114203-69114222 | Msa0517480:CDS | 55.0% | |
| GAGCCCACGCTTGTGGTACA+TGG | - | chr3_4:69110721-69110740 | None:intergenic | 60.0% | |
| TGTACCACAAGCGTGGGCTC+TGG | + | chr3_4:69110721-69110740 | Msa0517480:CDS | 60.0% | |
| GTACCACAAGCGTGGGCTCT+GGG | + | chr3_4:69110722-69110741 | Msa0517480:CDS | 60.0% | |
| GCCATCAAAGCCAAGCACGG+TGG | + | chr3_4:69110744-69110763 | Msa0517480:CDS | 60.0% | |
| TAGCGACGGGATCGTGACGA+GGG | - | chr3_4:69110776-69110795 | None:intergenic | 60.0% | |
| TTAGCGACGGGATCGTGACG+AGG | - | chr3_4:69110777-69110796 | None:intergenic | 60.0% | |
| TCGTCACGATCCCGTCGCTA+AGG | + | chr3_4:69110776-69110795 | Msa0517480:CDS | 60.0% | |
| GCTTCTTCACATCGTCGGCG+GGG | - | chr3_4:69110836-69110855 | None:intergenic | 60.0% | |
| GGCTTCTTCACATCGTCGGC+GGG | - | chr3_4:69110837-69110856 | None:intergenic | 60.0% | |
| ! | GGCTTGTGCTTGTTGCGGAG+TGG | - | chr3_4:69110858-69110877 | None:intergenic | 60.0% |
| TACTTGACTGAACCCCCCCC+CGG | - | chr3_4:69111919-69111938 | None:intergenic | 60.0% | |
| CCGCTGCTCACTGCGAAGTA+TGG | - | chr3_4:69111982-69112001 | None:intergenic | 60.0% | |
| AGCCCCCTGAGACGAACAAC+AGG | - | chr3_4:69112066-69112085 | None:intergenic | 60.0% | |
| ! | ATCGTTCTGAGCGGCGACCA+TGG | + | chr3_4:69113459-69113478 | Msa0517480:intron | 60.0% |
| ! | TCGTTCTGAGCGGCGACCAT+GGG | + | chr3_4:69113460-69113479 | Msa0517480:intron | 60.0% |
| GGAGCTGCAGCCTTAGCGAC+GGG | - | chr3_4:69110789-69110808 | None:intergenic | 65.0% | |
| CGGAGCTGCAGCCTTAGCGA+CGG | - | chr3_4:69110790-69110809 | None:intergenic | 65.0% | |
| CGTCGCTAAGGCTGCAGCTC+CGG | + | chr3_4:69110788-69110807 | Msa0517480:CDS | 65.0% | |
| TTCGCAGTGAGCAGCGGGAC+AGG | + | chr3_4:69111985-69112004 | Msa0517480:intron | 65.0% | |
| CAGGAAAAGGAGGAGGGGGC+TGG | - | chr3_4:69112047-69112066 | None:intergenic | 65.0% | |
| ! | CGTTCTGAGCGGCGACCATG+GGG | + | chr3_4:69113461-69113480 | Msa0517480:intron | 65.0% |
| ! | GTTCTGAGCGGCGACCATGG+GGG | + | chr3_4:69113462-69113481 | Msa0517480:intron | 65.0% |
| TGGCCCAGAGCCCACGCTTG+TGG | - | chr3_4:69110728-69110747 | None:intergenic | 70.0% | |
| ACAGCTTCGGGGCTCCCCCA+TGG | - | chr3_4:69113479-69113498 | None:intergenic | 70.0% | |
| AGGGGGCTGGAAGCCGCCAC+CGG | - | chr3_4:69112034-69112053 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 69110514 | 69114505 | 69110514 | ID=Msa0517480;Name=Msa0517480 |
| chr3_4 | mRNA | 69110514 | 69114505 | 69110514 | ID=Msa0517480-mRNA-1;Parent=Msa0517480;Name=Msa0517480-mRNA-1;_AED=0.14;_eAED=0.14;_QI=125|1|1|1|1|1|4|272|233 |
| chr3_4 | exon | 69110514 | 69110895 | 69110514 | ID=Msa0517480-mRNA-1:exon:18363;Parent=Msa0517480-mRNA-1 |
| chr3_4 | exon | 69112430 | 69112536 | 69112430 | ID=Msa0517480-mRNA-1:exon:18364;Parent=Msa0517480-mRNA-1 |
| chr3_4 | exon | 69113798 | 69113979 | 69113798 | ID=Msa0517480-mRNA-1:exon:18365;Parent=Msa0517480-mRNA-1 |
| chr3_4 | exon | 69114078 | 69114505 | 69114078 | ID=Msa0517480-mRNA-1:exon:18366;Parent=Msa0517480-mRNA-1 |
| chr3_4 | five_prime_UTR | 69110514 | 69110638 | 69110514 | ID=Msa0517480-mRNA-1:five_prime_utr;Parent=Msa0517480-mRNA-1 |
| chr3_4 | CDS | 69110639 | 69110895 | 69110639 | ID=Msa0517480-mRNA-1:cds;Parent=Msa0517480-mRNA-1 |
| chr3_4 | CDS | 69112430 | 69112536 | 69112430 | ID=Msa0517480-mRNA-1:cds;Parent=Msa0517480-mRNA-1 |
| chr3_4 | CDS | 69113798 | 69113979 | 69113798 | ID=Msa0517480-mRNA-1:cds;Parent=Msa0517480-mRNA-1 |
| chr3_4 | CDS | 69114078 | 69114233 | 69114078 | ID=Msa0517480-mRNA-1:cds;Parent=Msa0517480-mRNA-1 |
| chr3_4 | three_prime_UTR | 69114234 | 69114505 | 69114234 | ID=Msa0517480-mRNA-1:three_prime_utr;Parent=Msa0517480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
