Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0764820 | GAU49420.1 | 82.906 | 234 | 37 | 2 | 1 | 233 | 1 | 232 | 1.29e-135 | 390 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0764820 | sp|Q9FUS9|GSTUI_ARATH | 54.585 | 229 | 102 | 1 | 1 | 229 | 1 | 227 | 1.50e-84 | 253 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0764820 | A0A2Z6PF61 | 82.906 | 234 | 37 | 2 | 1 | 233 | 1 | 232 | 6.16e-136 | 390 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005050 | Msa0764820 | 0.800779 | 1.227927e-48 | -8.615850e-47 |
| Msa0016120 | Msa0764820 | 0.800728 | 1.257506e-48 | -8.615850e-47 |
| Msa0019600 | Msa0764820 | 0.862478 | 4.927283e-64 | -8.615850e-47 |
| Msa0036430 | Msa0764820 | 0.800447 | 1.435067e-48 | -8.615850e-47 |
| Msa0050040 | Msa0764820 | 0.843403 | 1.431760e-58 | -8.615850e-47 |
| Msa0053110 | Msa0764820 | 0.809790 | 1.589965e-50 | -8.615850e-47 |
| Msa0066320 | Msa0764820 | 0.806526 | 7.880880e-50 | -8.615850e-47 |
| Msa0084500 | Msa0764820 | 0.801321 | 9.514051e-49 | -8.615850e-47 |
| Msa0098440 | Msa0764820 | 0.814731 | 1.327145e-51 | -8.615850e-47 |
| Msa0102990 | Msa0764820 | 0.842594 | 2.350547e-58 | -8.615850e-47 |
| Msa0109880 | Msa0764820 | 0.800711 | 1.267897e-48 | -8.615850e-47 |
| Msa0111750 | Msa0764820 | 0.809162 | 2.168236e-50 | -8.615850e-47 |
| Msa0625890 | Msa0764820 | 0.801379 | 9.257277e-49 | -8.615850e-47 |
| Msa0641250 | Msa0764820 | 0.849344 | 3.434603e-60 | -8.615850e-47 |
| Msa0663680 | Msa0764820 | 0.806542 | 7.819726e-50 | -8.615850e-47 |
| Msa0667850 | Msa0764820 | 0.808931 | 2.430475e-50 | -8.615850e-47 |
| Msa0669840 | Msa0764820 | 0.876317 | 1.537488e-68 | -8.615850e-47 |
| Msa0680150 | Msa0764820 | 0.828855 | 7.127733e-55 | -8.615850e-47 |
| Msa0685330 | Msa0764820 | 0.814019 | 1.906401e-51 | -8.615850e-47 |
| Msa0688500 | Msa0764820 | 0.833722 | 4.528738e-56 | -8.615850e-47 |
| Msa0691160 | Msa0764820 | 0.811294 | 7.522772e-51 | -8.615850e-47 |
| Msa0707220 | Msa0764820 | 0.840465 | 8.556738e-58 | -8.615850e-47 |
| Msa0739580 | Msa0764820 | 0.813471 | 2.517661e-51 | -8.615850e-47 |
| Msa0747780 | Msa0764820 | 0.812658 | 3.794334e-51 | -8.615850e-47 |
| Msa0761580 | Msa0764820 | 0.815812 | 7.632028e-52 | -8.615850e-47 |
| Msa0764820 | Msa0770290 | 0.841982 | 3.414138e-58 | -8.615850e-47 |
| Msa0764820 | Msa0778930 | 0.818123 | 2.309724e-52 | -8.615850e-47 |
| Msa0764820 | Msa0802840 | 0.816214 | 6.207852e-52 | -8.615850e-47 |
| Msa0764820 | Msa0823400 | 0.807143 | 5.836041e-50 | -8.615850e-47 |
| Msa0764820 | Msa0840500 | 0.827859 | 1.239308e-54 | -8.615850e-47 |
| Msa0764820 | Msa0844560 | 0.863360 | 2.631376e-64 | -8.615850e-47 |
| Msa0764820 | Msa0849280 | 0.827270 | 1.716133e-54 | -8.615850e-47 |
| Msa0764820 | Msa0851020 | 0.821754 | 3.412214e-53 | -8.615850e-47 |
| Msa0764820 | Msa0862100 | 0.801759 | 7.738416e-49 | -8.615850e-47 |
| Msa0764820 | Msa0867350 | 0.869890 | 2.205743e-66 | -8.615850e-47 |
| Msa0764820 | Msa0872310 | 0.822959 | 1.792044e-53 | -8.615850e-47 |
| Msa0764820 | Msa0873190 | 0.830075 | 3.601225e-55 | -8.615850e-47 |
| Msa0764820 | Msa0885060 | 0.828299 | 9.714338e-55 | -8.615850e-47 |
| Msa0764820 | Msa0898730 | 0.871605 | 6.018372e-67 | -8.615850e-47 |
| Msa0764820 | Msa0905550 | 0.822601 | 2.170586e-53 | -8.615850e-47 |
| Msa0764820 | Msa0911990 | 0.807677 | 4.497092e-50 | -8.615850e-47 |
| Msa0764820 | Msa0929870 | 0.858401 | 8.450237e-63 | -8.615850e-47 |
| Msa0764820 | Msa0936340 | 0.804586 | 2.011909e-49 | -8.615850e-47 |
| Msa0764820 | Msa0937550 | 0.810559 | 1.085187e-50 | -8.615850e-47 |
| Msa0764820 | Msa0938430 | 0.808547 | 2.936228e-50 | -8.615850e-47 |
| Msa0764820 | Msa0944760 | 0.810210 | 1.290722e-50 | -8.615850e-47 |
| Msa0764820 | Msa0975580 | 0.812878 | 3.397415e-51 | -8.615850e-47 |
| Msa0764820 | Msa0999300 | 0.838400 | 2.941930e-57 | -8.615850e-47 |
| Msa0764820 | Msa0999360 | 0.812687 | 3.740119e-51 | -8.615850e-47 |
| Msa0764820 | Msa0999410 | 0.810077 | 1.379043e-50 | -8.615850e-47 |
| Msa0764820 | Msa1032450 | 0.816617 | 5.042479e-52 | -8.615850e-47 |
| Msa0764820 | Msa1037890 | 0.857828 | 1.251051e-62 | -8.615850e-47 |
| Msa0764820 | Msa1037900 | 0.863958 | 1.715994e-64 | -8.615850e-47 |
| Msa0764820 | Msa1037910 | 0.856464 | 3.161990e-62 | -8.615850e-47 |
| Msa0764820 | Msa1037920 | 0.823490 | 1.346512e-53 | -8.615850e-47 |
| Msa0764820 | Msa1041530 | 0.857401 | 1.673830e-62 | -8.615850e-47 |
| Msa0764820 | Msa1045780 | 0.811141 | 8.122769e-51 | -8.615850e-47 |
| Msa0764820 | Msa1073340 | 0.820928 | 5.291355e-53 | -8.615850e-47 |
| Msa0764820 | Msa1081570 | 0.859797 | 3.225751e-63 | -8.615850e-47 |
| Msa0764820 | Msa1084520 | 0.811807 | 5.819696e-51 | -8.615850e-47 |
| Msa0764820 | Msa1123880 | 0.830404 | 2.994037e-55 | -8.615850e-47 |
| Msa0764820 | Msa1127140 | 0.872912 | 2.208633e-67 | -8.615850e-47 |
| Msa0764820 | Msa1129950 | 0.855998 | 4.328086e-62 | -8.615850e-47 |
| Msa0764820 | Msa1129960 | 0.850247 | 1.920544e-60 | -8.615850e-47 |
| Msa0764820 | Msa1129970 | 0.840449 | 8.635956e-58 | -8.615850e-47 |
| Msa0764820 | Msa1129980 | 0.809464 | 1.868374e-50 | -8.615850e-47 |
| Msa0764820 | Msa1130010 | 0.840273 | 9.603277e-58 | -8.615850e-47 |
| Msa0764820 | Msa1145020 | 0.852304 | 5.041511e-61 | -8.615850e-47 |
| Msa0764820 | Msa1166400 | 0.860088 | 2.635246e-63 | -8.615850e-47 |
| Msa0764820 | Msa1169710 | 0.822315 | 2.530494e-53 | -8.615850e-47 |
| Msa0764820 | Msa1169990 | 0.824137 | 9.497231e-54 | -8.615850e-47 |
| Msa0764820 | Msa1171310 | 0.809612 | 1.736507e-50 | -8.615850e-47 |
| Msa0764820 | Msa1176160 | 0.811534 | 6.671267e-51 | -8.615850e-47 |
| Msa0764820 | Msa1200440 | 0.811430 | 7.029003e-51 | -8.615850e-47 |
| Msa0764820 | Msa1201110 | 0.830441 | 2.931485e-55 | -8.615850e-47 |
| Msa0764820 | Msa1201160 | 0.881923 | 1.602477e-70 | -8.615850e-47 |
| Msa0764820 | Msa1228190 | 0.806923 | 6.496747e-50 | -8.615850e-47 |
| Msa0764820 | Msa1228610 | 0.805250 | 1.461451e-49 | -8.615850e-47 |
| Msa0764820 | Msa1294290 | 0.853929 | 1.726181e-61 | -8.615850e-47 |
| Msa0764820 | Msa1305510 | 0.857803 | 1.272905e-62 | -8.615850e-47 |
| Msa0764820 | Msa1307190 | 0.801342 | 9.422863e-49 | -8.615850e-47 |
| Msa0764820 | Msa1336780 | 0.808269 | 3.364577e-50 | -8.615850e-47 |
| Msa0764820 | Msa1355400 | 0.828378 | 9.292884e-55 | -8.615850e-47 |
| Msa0764820 | Msa1374550 | 0.810947 | 8.944867e-51 | -8.615850e-47 |
| Msa0764820 | Msa1406780 | 0.809243 | 2.083278e-50 | -8.615850e-47 |
| Msa0764820 | Msa1414930 | 0.812111 | 4.997687e-51 | -8.615850e-47 |
| Msa0764820 | Msa1420060 | 0.881676 | 1.969650e-70 | -8.615850e-47 |
| Msa0764820 | Msa1421550 | 0.877857 | 4.489461e-69 | -8.615850e-47 |
| Msa0764820 | Msa1423460 | 0.815848 | 7.492453e-52 | -8.615850e-47 |
| Msa0764820 | Msa1431850 | 0.813873 | 2.053265e-51 | -8.615850e-47 |
| Msa0764820 | Msa1435480 | 0.802356 | 5.831531e-49 | -8.615850e-47 |
| Msa0764820 | Msa1455320 | 0.833401 | 5.448491e-56 | -8.615850e-47 |
| Msa0141120 | Msa0764820 | 0.800494 | 1.403732e-48 | -8.615850e-47 |
| Msa0147560 | Msa0764820 | 0.806721 | 7.168030e-50 | -8.615850e-47 |
| Msa0149140 | Msa0764820 | 0.809349 | 1.976846e-50 | -8.615850e-47 |
| Msa0156250 | Msa0764820 | 0.802185 | 6.325080e-49 | -8.615850e-47 |
| Msa0185490 | Msa0764820 | 0.812790 | 3.550482e-51 | -8.615850e-47 |
| Msa0197930 | Msa0764820 | 0.810097 | 1.365579e-50 | -8.615850e-47 |
| Msa0203030 | Msa0764820 | 0.838874 | 2.218621e-57 | -8.615850e-47 |
| Msa0212080 | Msa0764820 | 0.818742 | 1.672526e-52 | -8.615850e-47 |
| Msa0219190 | Msa0764820 | 0.874985 | 4.399469e-68 | -8.615850e-47 |
| Msa0370600 | Msa0764820 | 0.818311 | 2.093956e-52 | -8.615850e-47 |
| Msa0382010 | Msa0764820 | 0.814381 | 1.586036e-51 | -8.615850e-47 |
| Msa0392420 | Msa0764820 | 0.843474 | 1.370110e-58 | -8.615850e-47 |
| Msa0392460 | Msa0764820 | 0.841245 | 5.340112e-58 | -8.615850e-47 |
| Msa0392490 | Msa0764820 | 0.845210 | 4.681856e-59 | -8.615850e-47 |
| Msa0406000 | Msa0764820 | 0.855866 | 4.730925e-62 | -8.615850e-47 |
| Msa0408630 | Msa0764820 | 0.807708 | 4.429012e-50 | -8.615850e-47 |
| Msa0413930 | Msa0764820 | 0.816440 | 5.524142e-52 | -8.615850e-47 |
| Msa0418200 | Msa0764820 | 0.832434 | 9.474623e-56 | -8.615850e-47 |
| Msa0424330 | Msa0764820 | 0.820471 | 6.742154e-53 | -8.615850e-47 |
| Msa0424340 | Msa0764820 | 0.830986 | 2.155447e-55 | -8.615850e-47 |
| Msa0424350 | Msa0764820 | 0.821725 | 3.464910e-53 | -8.615850e-47 |
| Msa0436500 | Msa0764820 | 0.842650 | 2.272053e-58 | -8.615850e-47 |
| Msa0444010 | Msa0764820 | 0.800999 | 1.107121e-48 | -8.615850e-47 |
| Msa0451400 | Msa0764820 | 0.867340 | 1.471200e-65 | -8.615850e-47 |
| Msa0464540 | Msa0764820 | 0.817553 | 3.106667e-52 | -8.615850e-47 |
| Msa0252630 | Msa0764820 | 0.821386 | 4.149618e-53 | -8.615850e-47 |
| Msa0291330 | Msa0764820 | 0.804349 | 2.254102e-49 | -8.615850e-47 |
| Msa0298240 | Msa0764820 | 0.869933 | 2.135777e-66 | -8.615850e-47 |
| Msa0317280 | Msa0764820 | 0.801915 | 7.188989e-49 | -8.615850e-47 |
| Msa0322840 | Msa0764820 | 0.800828 | 1.200020e-48 | -8.615850e-47 |
| Msa0322860 | Msa0764820 | 0.802687 | 4.983587e-49 | -8.615850e-47 |
| Msa0329620 | Msa0764820 | 0.804446 | 2.152238e-49 | -8.615850e-47 |
| Msa0344570 | Msa0764820 | 0.835611 | 1.516892e-56 | -8.615850e-47 |
| Msa0351770 | Msa0764820 | 0.823517 | 1.327526e-53 | -8.615850e-47 |
| Msa0359250 | Msa0764820 | 0.867991 | 9.098166e-66 | -8.615850e-47 |
| Msa0361260 | Msa0764820 | 0.800261 | 1.565600e-48 | -8.615850e-47 |
| Msa0487570 | Msa0764820 | 0.846233 | 2.469717e-59 | -8.615850e-47 |
| Msa0487630 | Msa0764820 | 0.840880 | 6.659279e-58 | -8.615850e-47 |
| Msa0492190 | Msa0764820 | 0.844502 | 7.267255e-59 | -8.615850e-47 |
| Msa0515950 | Msa0764820 | 0.815029 | 1.139889e-51 | -8.615850e-47 |
| Msa0517390 | Msa0764820 | 0.810576 | 1.076348e-50 | -8.615850e-47 |
| Msa0520510 | Msa0764820 | 0.816424 | 5.569825e-52 | -8.615850e-47 |
| Msa0534930 | Msa0764820 | 0.815985 | 6.983161e-52 | -8.615850e-47 |
| Msa0535040 | Msa0764820 | 0.820072 | 8.321060e-53 | -8.615850e-47 |
| Msa0537920 | Msa0764820 | 0.843912 | 1.046490e-58 | -8.615850e-47 |
| Msa0538220 | Msa0764820 | 0.828483 | 8.769283e-55 | -8.615850e-47 |
| Msa0575740 | Msa0764820 | 0.801222 | 9.971132e-49 | -8.615850e-47 |
| Msa0591790 | Msa0764820 | 0.835083 | 2.063060e-56 | -8.615850e-47 |
| Msa0594090 | Msa0764820 | 0.851479 | 8.640053e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0764820 | MtrunA17_Chr5g0415411 | 76.395 | 233 | 50 | 2 | 1 | 233 | 1 | 228 | 2.82e-126 | 356 |
| Msa0764820 | MtrunA17_Chr8g0363751 | 56.444 | 225 | 93 | 2 | 1 | 223 | 1 | 222 | 5.36e-88 | 259 |
| Msa0764820 | MtrunA17_Chr8g0391631 | 55.556 | 162 | 67 | 2 | 1 | 160 | 17 | 175 | 1.83e-60 | 187 |
| Msa0764820 | MtrunA17_Chr7g0240631 | 39.485 | 233 | 130 | 3 | 1 | 231 | 1 | 224 | 9.12e-55 | 175 |
| Msa0764820 | MtrunA17_Chr7g0240641 | 39.914 | 233 | 129 | 3 | 1 | 231 | 1 | 224 | 2.15e-54 | 174 |
| Msa0764820 | MtrunA17_Chr7g0240681 | 42.060 | 233 | 123 | 4 | 1 | 230 | 1 | 224 | 5.46e-54 | 173 |
| Msa0764820 | MtrunA17_Chr7g0240581 | 39.224 | 232 | 130 | 3 | 1 | 230 | 1 | 223 | 2.21e-52 | 169 |
| Msa0764820 | MtrunA17_Chr7g0240691 | 41.667 | 228 | 123 | 3 | 5 | 231 | 37 | 255 | 3.92e-52 | 169 |
| Msa0764820 | MtrunA17_Chr1g0196721 | 42.667 | 225 | 122 | 3 | 6 | 230 | 3 | 220 | 2.69e-51 | 166 |
| Msa0764820 | MtrunA17_Chr1g0196691 | 41.048 | 229 | 125 | 5 | 5 | 231 | 28 | 248 | 4.81e-51 | 166 |
| Msa0764820 | MtrunA17_Chr3g0132581 | 41.558 | 231 | 126 | 3 | 1 | 231 | 1 | 222 | 4.57e-50 | 163 |
| Msa0764820 | MtrunA17_Chr7g0240561 | 39.655 | 232 | 129 | 3 | 1 | 230 | 1 | 223 | 6.72e-50 | 162 |
| Msa0764820 | MtrunA17_Chr1g0196661 | 41.333 | 225 | 125 | 3 | 5 | 229 | 3 | 220 | 7.47e-50 | 162 |
| Msa0764820 | MtrunA17_Chr7g0240541 | 39.655 | 232 | 129 | 3 | 1 | 230 | 1 | 223 | 7.35e-49 | 160 |
| Msa0764820 | MtrunA17_Chr7g0240551 | 39.224 | 232 | 130 | 3 | 1 | 230 | 1 | 223 | 1.38e-48 | 159 |
| Msa0764820 | MtrunA17_Chr7g0240531 | 39.655 | 232 | 129 | 3 | 1 | 230 | 1 | 223 | 1.50e-48 | 159 |
| Msa0764820 | MtrunA17_Chr7g0240521 | 40.598 | 234 | 125 | 6 | 1 | 230 | 8 | 231 | 4.21e-48 | 158 |
| Msa0764820 | MtrunA17_Chr4g0008791 | 39.912 | 228 | 126 | 4 | 5 | 231 | 7 | 224 | 4.66e-48 | 157 |
| Msa0764820 | MtrunA17_Chr1g0212301 | 42.326 | 215 | 114 | 4 | 5 | 217 | 3 | 209 | 7.28e-48 | 157 |
| Msa0764820 | MtrunA17_Chr1g0196711 | 39.912 | 228 | 124 | 4 | 5 | 229 | 3 | 220 | 1.13e-47 | 157 |
| Msa0764820 | MtrunA17_Chr6g0483141 | 38.261 | 230 | 130 | 3 | 4 | 230 | 2 | 222 | 1.48e-47 | 156 |
| Msa0764820 | MtrunA17_Chr7g0240511 | 38.793 | 232 | 126 | 5 | 1 | 230 | 1 | 218 | 2.80e-47 | 155 |
| Msa0764820 | MtrunA17_Chr8g0379561 | 39.091 | 220 | 125 | 3 | 1 | 220 | 2 | 212 | 6.44e-47 | 155 |
| Msa0764820 | MtrunA17_Chr7g0240671 | 37.674 | 215 | 120 | 4 | 1 | 215 | 1 | 201 | 7.96e-46 | 152 |
| Msa0764820 | MtrunA17_Chr8g0379581 | 39.171 | 217 | 123 | 2 | 1 | 217 | 1 | 208 | 8.55e-46 | 152 |
| Msa0764820 | MtrunA17_Chr2g0312771 | 41.475 | 217 | 117 | 4 | 3 | 219 | 2 | 208 | 2.23e-45 | 150 |
| Msa0764820 | MtrunA17_Chr7g0240611 | 34.783 | 230 | 137 | 3 | 2 | 231 | 4 | 220 | 6.88e-45 | 149 |
| Msa0764820 | MtrunA17_Chr2g0312781 | 42.105 | 209 | 111 | 4 | 8 | 216 | 24 | 222 | 1.14e-44 | 149 |
| Msa0764820 | MtrunA17_Chr4g0029341 | 39.207 | 227 | 125 | 4 | 3 | 226 | 2 | 218 | 2.28e-44 | 148 |
| Msa0764820 | MtrunA17_Chr4g0008781 | 39.556 | 225 | 124 | 4 | 1 | 222 | 1 | 216 | 3.41e-44 | 147 |
| Msa0764820 | MtrunA17_Chr2g0312751 | 40.777 | 206 | 112 | 3 | 14 | 219 | 13 | 208 | 1.60e-43 | 146 |
| Msa0764820 | MtrunA17_Chr2g0312791 | 39.908 | 218 | 121 | 4 | 3 | 219 | 2 | 210 | 2.13e-43 | 145 |
| Msa0764820 | MtrunA17_Chr5g0417011 | 37.220 | 223 | 135 | 3 | 3 | 224 | 5 | 223 | 4.59e-43 | 145 |
| Msa0764820 | MtrunA17_Chr2g0312681 | 37.788 | 217 | 125 | 3 | 3 | 219 | 2 | 208 | 3.18e-42 | 142 |
| Msa0764820 | MtrunA17_Chr2g0312811 | 42.788 | 208 | 107 | 5 | 14 | 219 | 13 | 210 | 7.46e-42 | 142 |
| Msa0764820 | MtrunA17_Chr3g0107731 | 40.376 | 213 | 117 | 4 | 14 | 226 | 18 | 220 | 1.58e-41 | 141 |
| Msa0764820 | MtrunA17_Chr2g0312691 | 38.991 | 218 | 123 | 3 | 3 | 220 | 2 | 209 | 2.10e-41 | 140 |
| Msa0764820 | MtrunA17_Chr2g0312711 | 38.009 | 221 | 116 | 4 | 4 | 219 | 3 | 207 | 3.65e-41 | 140 |
| Msa0764820 | MtrunA17_Chr2g0312721 | 41.748 | 206 | 110 | 4 | 14 | 219 | 13 | 208 | 4.91e-41 | 139 |
| Msa0764820 | MtrunA17_Chr7g0240661 | 37.327 | 217 | 123 | 3 | 5 | 221 | 7 | 210 | 5.64e-41 | 139 |
| Msa0764820 | MtrunA17_Chr7g0240651 | 35.242 | 227 | 134 | 3 | 5 | 231 | 7 | 220 | 7.01e-41 | 139 |
| Msa0764820 | MtrunA17_Chr2g0312731 | 42.365 | 203 | 107 | 5 | 14 | 216 | 13 | 205 | 1.21e-40 | 138 |
| Msa0764820 | MtrunA17_Chr3g0107741 | 39.815 | 216 | 114 | 6 | 14 | 226 | 18 | 220 | 3.05e-40 | 137 |
| Msa0764820 | MtrunA17_Chr5g0433801 | 37.915 | 211 | 119 | 5 | 14 | 223 | 15 | 214 | 1.73e-38 | 133 |
| Msa0764820 | MtrunA17_Chr1g0196771 | 37.118 | 229 | 132 | 4 | 5 | 231 | 3 | 221 | 1.65e-37 | 130 |
| Msa0764820 | MtrunA17_Chr8g0357211 | 38.222 | 225 | 129 | 4 | 3 | 227 | 2 | 216 | 1.96e-36 | 127 |
| Msa0764820 | MtrunA17_Chr8g0357241 | 37.333 | 225 | 131 | 4 | 3 | 227 | 2 | 216 | 4.84e-36 | 127 |
| Msa0764820 | MtrunA17_Chr4g0069471 | 41.176 | 187 | 100 | 5 | 4 | 189 | 24 | 201 | 3.05e-33 | 119 |
| Msa0764820 | MtrunA17_Chr5g0415421 | 73.333 | 75 | 19 | 1 | 29 | 103 | 11 | 84 | 1.45e-28 | 104 |
| Msa0764820 | MtrunA17_Chr2g0313561 | 55.385 | 65 | 26 | 1 | 49 | 113 | 2 | 63 | 1.02e-18 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0764820 | AT1G10360.1 | 54.585 | 229 | 102 | 1 | 1 | 229 | 1 | 227 | 1.53e-85 | 253 |
| Msa0764820 | AT1G10370.1 | 56.109 | 221 | 95 | 1 | 1 | 221 | 1 | 219 | 3.96e-83 | 247 |
| Msa0764820 | AT1G59700.1 | 46.522 | 230 | 120 | 2 | 5 | 233 | 6 | 233 | 7.81e-72 | 219 |
| Msa0764820 | AT1G59670.1 | 47.982 | 223 | 113 | 2 | 5 | 226 | 6 | 226 | 1.66e-71 | 218 |
| Msa0764820 | AT1G27130.1 | 45.982 | 224 | 115 | 3 | 1 | 221 | 1 | 221 | 3.55e-62 | 194 |
| Msa0764820 | AT1G69930.1 | 46.759 | 216 | 112 | 1 | 6 | 221 | 13 | 225 | 8.47e-62 | 193 |
| Msa0764820 | AT1G27140.1 | 42.795 | 229 | 124 | 3 | 1 | 225 | 1 | 226 | 2.46e-59 | 187 |
| Msa0764820 | AT1G69920.1 | 41.743 | 218 | 122 | 2 | 6 | 221 | 35 | 249 | 1.61e-55 | 178 |
| Msa0764820 | AT2G29420.1 | 35.111 | 225 | 137 | 3 | 3 | 227 | 7 | 222 | 7.96e-45 | 150 |
| Msa0764820 | AT3G09270.1 | 37.104 | 221 | 130 | 3 | 4 | 223 | 5 | 217 | 1.33e-43 | 147 |
| Msa0764820 | AT2G29490.1 | 38.318 | 214 | 122 | 4 | 6 | 218 | 8 | 212 | 7.49e-43 | 145 |
| Msa0764820 | AT1G78340.1 | 39.048 | 210 | 112 | 4 | 14 | 220 | 13 | 209 | 1.85e-41 | 141 |
| Msa0764820 | AT2G29470.1 | 37.004 | 227 | 130 | 6 | 6 | 229 | 8 | 224 | 2.34e-40 | 138 |
| Msa0764820 | AT1G17170.1 | 40.291 | 206 | 112 | 4 | 14 | 219 | 13 | 207 | 1.61e-39 | 136 |
| Msa0764820 | AT2G29450.1 | 34.649 | 228 | 140 | 3 | 4 | 230 | 5 | 224 | 1.84e-39 | 136 |
| Msa0764820 | AT2G29480.1 | 36.036 | 222 | 132 | 4 | 6 | 226 | 8 | 220 | 2.32e-39 | 135 |
| Msa0764820 | AT1G78320.1 | 40.291 | 206 | 111 | 5 | 14 | 218 | 13 | 207 | 2.43e-39 | 135 |
| Msa0764820 | AT2G29460.1 | 35.841 | 226 | 133 | 5 | 4 | 227 | 6 | 221 | 3.58e-39 | 135 |
| Msa0764820 | AT1G78370.1 | 34.783 | 207 | 125 | 3 | 14 | 220 | 13 | 209 | 1.88e-38 | 133 |
| Msa0764820 | AT1G78380.1 | 36.283 | 226 | 134 | 4 | 3 | 228 | 2 | 217 | 1.88e-38 | 133 |
| Msa0764820 | AT1G17180.1 | 37.383 | 214 | 124 | 4 | 14 | 227 | 13 | 216 | 2.26e-38 | 133 |
| Msa0764820 | AT1G17190.1 | 36.486 | 222 | 125 | 4 | 1 | 219 | 1 | 209 | 3.95e-37 | 130 |
| Msa0764820 | AT2G29440.1 | 34.649 | 228 | 137 | 5 | 5 | 230 | 6 | 223 | 1.02e-36 | 129 |
| Msa0764820 | AT3G43800.1 | 35.909 | 220 | 131 | 5 | 1 | 218 | 1 | 212 | 2.16e-35 | 125 |
| Msa0764820 | AT1G53680.1 | 35.714 | 210 | 117 | 5 | 14 | 218 | 16 | 212 | 3.87e-35 | 125 |
| Msa0764820 | AT1G78360.1 | 38.028 | 213 | 121 | 5 | 8 | 219 | 7 | 209 | 4.15e-35 | 124 |
| Msa0764820 | AT5G62480.1 | 32.301 | 226 | 145 | 3 | 4 | 225 | 7 | 228 | 4.62e-34 | 122 |
| Msa0764820 | AT1G74590.1 | 30.493 | 223 | 151 | 2 | 8 | 230 | 10 | 228 | 7.50e-32 | 116 |
| Msa0764820 | AT1G78320.2 | 33.495 | 206 | 98 | 5 | 14 | 218 | 13 | 180 | 3.71e-24 | 95.5 |
| Msa0764820 | AT5G62480.2 | 26.106 | 226 | 133 | 3 | 4 | 225 | 7 | 202 | 5.86e-20 | 85.1 |
Find 50 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTCTACTCCAAAGTAAT+TGG | 0.136209 | 5_2:+25274355 | Msa0764820:exon |
| ATCGAGCCATTGCGAAATTT+TGG | 0.144442 | 5_2:+25273285 | Msa0764820:CDS |
| TCCACAAGTTTATCAGTTTC+TGG | 0.176738 | 5_2:-25274302 | None:intergenic |
| GGATTTATTGATATTGCTTT+TGG | 0.202729 | 5_2:+25274149 | Msa0764820:CDS |
| CTGAAGAAGCAAGTCACTTT+TGG | 0.216096 | 5_2:-25273120 | None:intergenic |
| TTGAATATATTGATGAAGTT+TGG | 0.240973 | 5_2:+25273216 | Msa0764820:CDS |
| TACAAATGACTTGAAGCTTT+TGG | 0.262387 | 5_2:+25273007 | Msa0764820:CDS |
| AAAATTCCAGTTCTCATTCA+TGG | 0.281479 | 5_2:+25273161 | Msa0764820:CDS |
| AATCCAATCCTTTGATGTTA+AGG | 0.308526 | 5_2:-25273070 | None:intergenic |
| AGACTCCAGCTTTGGTGAAA+TGG | 0.311703 | 5_2:+25274237 | Msa0764820:CDS |
| GTCATTTGTAGCCATTGTTA+AGG | 0.331101 | 5_2:-25272994 | None:intergenic |
| GACTCCAGCTTTGGTGAAAT+GGG | 0.333466 | 5_2:+25274238 | Msa0764820:CDS |
| ATCCAATCCTTTGATGTTAA+GGG | 0.362609 | 5_2:-25273069 | None:intergenic |
| TGCCCTTAACATCAAAGGAT+TGG | 0.392813 | 5_2:+25273067 | Msa0764820:CDS |
| GACCCTCAACCAACTCAAAT+AGG | 0.392914 | 5_2:-25274174 | None:intergenic |
| GAAACATTTCCCAATTACTT+TGG | 0.420430 | 5_2:-25274365 | None:intergenic |
| GCTTCTACTCCAAAGTAATT+GGG | 0.421449 | 5_2:+25274356 | Msa0764820:exon |
| TCATTTGTAGCCATTGTTAA+GGG | 0.424630 | 5_2:-25272993 | None:intergenic |
| GATTGACTTGTCTTCAAGAA+TGG | 0.427374 | 5_2:+25274417 | Msa0764820:three_prime_UTR |
| CATAAGCATTTGAAGGAAGA+AGG | 0.439493 | 5_2:-25273262 | None:intergenic |
| TGCTGCTGATCCTTCTGTGA+AGG | 0.439808 | 5_2:+25274271 | Msa0764820:CDS |
| GGTCCTATTTGAGTTGGTTG+AGG | 0.441711 | 5_2:+25274171 | Msa0764820:CDS |
| GTCCTATTTGAGTTGGTTGA+GGG | 0.442650 | 5_2:+25274172 | Msa0764820:CDS |
| TTATCTCCATGAATGAGAAC+TGG | 0.442961 | 5_2:-25273167 | None:intergenic |
| TATATGCAAAAGTTACTTGA+AGG | 0.443056 | 5_2:+25272955 | Msa0764820:five_prime_UTR |
| TGGTATAATTCCTCACGAAA+TGG | 0.444598 | 5_2:+25273999 | Msa0764820:CDS |
| TCAGCCCATTTCACCAAAGC+TGG | 0.450590 | 5_2:-25274242 | None:intergenic |
| GGAAGAAGTGCTTGTGAGGT+TGG | 0.452537 | 5_2:+25274070 | Msa0764820:CDS |
| GGAAATGTTTCAAAATATGA+AGG | 0.476742 | 5_2:+25274377 | Msa0764820:three_prime_UTR |
| TGAAACAAAGACTCCAGCTT+TGG | 0.477233 | 5_2:+25274229 | Msa0764820:CDS |
| GCTGCTGATCCTTCTGTGAA+GGG | 0.482984 | 5_2:+25274272 | Msa0764820:CDS |
| TAAACTTGTGGAGTTTGCTA+AGG | 0.485321 | 5_2:+25274313 | Msa0764820:CDS |
| TATGATTGCAGATTCACAAA+TGG | 0.490176 | 5_2:-25273192 | None:intergenic |
| AAATACCTTGTCATCAATGT+AGG | 0.511240 | 5_2:-25273312 | None:intergenic |
| AAAATTGCCCTTAACATCAA+AGG | 0.511770 | 5_2:+25273062 | Msa0764820:CDS |
| GCTCGATCATAAGCATTTGA+AGG | 0.528885 | 5_2:-25273269 | None:intergenic |
| TGAGAAAATGACAGGAAAGA+AGG | 0.539427 | 5_2:+25274199 | Msa0764820:CDS |
| AAACTTGTGGAGTTTGCTAA+GGG | 0.551366 | 5_2:+25274314 | Msa0764820:CDS |
| ACCAGAAACTGATAAACTTG+TGG | 0.558982 | 5_2:+25274301 | Msa0764820:CDS |
| ACTACTTGCTTAGTGATGTA+CGG | 0.563761 | 5_2:+25274551 | Msa0764820:three_prime_UTR |
| AGGGTCACTGAGAAAATGAC+AGG | 0.565602 | 5_2:+25274191 | Msa0764820:CDS |
| TAAAGATGACGAGTCAAAGA+AGG | 0.577368 | 5_2:+25274031 | Msa0764820:CDS |
| GTGATCAACAAGTATAGTGA+AGG | 0.581995 | 5_2:+25274098 | Msa0764820:CDS |
| CTTAATACAAATGGACTGAA+CGG | 0.585122 | 5_2:-25273035 | None:intergenic |
| AGCAATCAAACCATTTCGTG+AGG | 0.586616 | 5_2:-25274009 | None:intergenic |
| ACTAGAATTTCCCTTAACAA+TGG | 0.591456 | 5_2:+25272983 | Msa0764820:exon |
| GGTTGCCTACATTGATGACA+AGG | 0.605042 | 5_2:+25273307 | Msa0764820:CDS |
| GGTAGAACTCCCTTCACAGA+AGG | 0.612679 | 5_2:-25274281 | None:intergenic |
| GGCAACCCAAAATTTCGCAA+TGG | 0.635242 | 5_2:-25273291 | None:intergenic |
| AAATGGAAGAAGTGCTTGTG+AGG | 0.640532 | 5_2:+25274066 | Msa0764820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGATTAAAATCTTATAA+AGG | - | chr5_2:25273360-25273379 | None:intergenic | 10.0% |
| !! | ACACTAAATTAATATTTATA+CGG | - | chr5_2:25273832-25273851 | None:intergenic | 10.0% |
| !! | AAAAGATTAAAATCTTATAA+AGG | - | chr5_2:25273360-25273379 | None:intergenic | 10.0% |
| !! | ACACTAAATTAATATTTATA+CGG | - | chr5_2:25273832-25273851 | None:intergenic | 10.0% |
| !!! | ATTTTTACTCTTAATACAAA+TGG | - | chr5_2:25273047-25273066 | None:intergenic | 15.0% |
| !!! | ATTTTTACTCTTAATACAAA+TGG | - | chr5_2:25273047-25273066 | None:intergenic | 15.0% |
| !! | TTGAATATATTGATGAAGTT+TGG | + | chr5_2:25273216-25273235 | Msa0764820:CDS | 20.0% |
| !! | ATAAAAATTACTCAAAGACA+TGG | - | chr5_2:25273391-25273410 | None:intergenic | 20.0% |
| !! | AAAAAAATCATATACCATGA+TGG | + | chr5_2:25273453-25273472 | Msa0764820:intron | 20.0% |
| !!! | AAGTTCTAACTATATGTATA+TGG | - | chr5_2:25273623-25273642 | None:intergenic | 20.0% |
| !!! | GATTTATTGATATTGCTTTT+GGG | + | chr5_2:25274150-25274169 | Msa0764820:CDS | 20.0% |
| !!! | TGTTTTGTTTATACTTGTTT+TGG | + | chr5_2:25274513-25274532 | Msa0764820:three_prime_UTR | 20.0% |
| !! | TTGAATATATTGATGAAGTT+TGG | + | chr5_2:25273216-25273235 | Msa0764820:CDS | 20.0% |
| !! | ATAAAAATTACTCAAAGACA+TGG | - | chr5_2:25273391-25273410 | None:intergenic | 20.0% |
| !! | AAAAAAATCATATACCATGA+TGG | + | chr5_2:25273453-25273472 | Msa0764820:intron | 20.0% |
| !!! | AAGTTCTAACTATATGTATA+TGG | - | chr5_2:25273623-25273642 | None:intergenic | 20.0% |
| !!! | GATTTATTGATATTGCTTTT+GGG | + | chr5_2:25274150-25274169 | Msa0764820:CDS | 20.0% |
| !!! | TGTTTTGTTTATACTTGTTT+TGG | + | chr5_2:25274513-25274532 | Msa0764820:three_prime_UTR | 20.0% |
| !! | TAACTTTTGCATATATTGAG+AGG | - | chr5_2:25272950-25272969 | None:intergenic | 25.0% |
| ! | TATATGCAAAAGTTACTTGA+AGG | + | chr5_2:25272955-25272974 | Msa0764820:five_prime_UTR | 25.0% |
| ! | GATGAAGTTTGGAAAAATAA+TGG | + | chr5_2:25273227-25273246 | Msa0764820:CDS | 25.0% |
| ! | AAAAAAACATTGTGCATTGT+GGG | - | chr5_2:25273508-25273527 | None:intergenic | 25.0% |
| ! | TAAAAAAACATTGTGCATTG+TGG | - | chr5_2:25273509-25273528 | None:intergenic | 25.0% |
| !!! | TGCACAATGTTTTTTTAATC+AGG | + | chr5_2:25273512-25273531 | Msa0764820:intron | 25.0% |
| !!! | ATGTTGTTTGTCATTGTTTT+TGG | + | chr5_2:25273958-25273977 | Msa0764820:intron | 25.0% |
| !!! | TCATTGTTTTTGGTTTCAAT+TGG | + | chr5_2:25273968-25273987 | Msa0764820:intron | 25.0% |
| !!! | CATTGTTTTTGGTTTCAATT+GGG | + | chr5_2:25273969-25273988 | Msa0764820:intron | 25.0% |
| !! | GGATTTATTGATATTGCTTT+TGG | + | chr5_2:25274149-25274168 | Msa0764820:CDS | 25.0% |
| ! | GGAAATGTTTCAAAATATGA+AGG | + | chr5_2:25274377-25274396 | Msa0764820:three_prime_UTR | 25.0% |
| !!! | TTTGTTTATACTTGTTTTGG+TGG | + | chr5_2:25274516-25274535 | Msa0764820:three_prime_UTR | 25.0% |
| !!! | TTGTTTATACTTGTTTTGGT+GGG | + | chr5_2:25274517-25274536 | Msa0764820:three_prime_UTR | 25.0% |
| !! | TAACTTTTGCATATATTGAG+AGG | - | chr5_2:25272950-25272969 | None:intergenic | 25.0% |
| ! | TATATGCAAAAGTTACTTGA+AGG | + | chr5_2:25272955-25272974 | Msa0764820:five_prime_UTR | 25.0% |
| ! | GATGAAGTTTGGAAAAATAA+TGG | + | chr5_2:25273227-25273246 | Msa0764820:CDS | 25.0% |
| ! | AAAAAAACATTGTGCATTGT+GGG | - | chr5_2:25273508-25273527 | None:intergenic | 25.0% |
| ! | TAAAAAAACATTGTGCATTG+TGG | - | chr5_2:25273509-25273528 | None:intergenic | 25.0% |
| !!! | TGCACAATGTTTTTTTAATC+AGG | + | chr5_2:25273512-25273531 | Msa0764820:intron | 25.0% |
| !!! | ATGTTGTTTGTCATTGTTTT+TGG | + | chr5_2:25273958-25273977 | Msa0764820:intron | 25.0% |
| !!! | TCATTGTTTTTGGTTTCAAT+TGG | + | chr5_2:25273968-25273987 | Msa0764820:intron | 25.0% |
| !!! | CATTGTTTTTGGTTTCAATT+GGG | + | chr5_2:25273969-25273988 | Msa0764820:intron | 25.0% |
| !! | GGATTTATTGATATTGCTTT+TGG | + | chr5_2:25274149-25274168 | Msa0764820:CDS | 25.0% |
| ! | GGAAATGTTTCAAAATATGA+AGG | + | chr5_2:25274377-25274396 | Msa0764820:three_prime_UTR | 25.0% |
| !!! | TTTGTTTATACTTGTTTTGG+TGG | + | chr5_2:25274516-25274535 | Msa0764820:three_prime_UTR | 25.0% |
| !!! | TTGTTTATACTTGTTTTGGT+GGG | + | chr5_2:25274517-25274536 | Msa0764820:three_prime_UTR | 25.0% |
| ACTAGAATTTCCCTTAACAA+TGG | + | chr5_2:25272983-25273002 | Msa0764820:exon | 30.0% | |
| TCATTTGTAGCCATTGTTAA+GGG | - | chr5_2:25272996-25273015 | None:intergenic | 30.0% | |
| ! | TACAAATGACTTGAAGCTTT+TGG | + | chr5_2:25273007-25273026 | Msa0764820:CDS | 30.0% |
| ! | ACAAATGACTTGAAGCTTTT+GGG | + | chr5_2:25273008-25273027 | Msa0764820:CDS | 30.0% |
| !! | CTTAATACAAATGGACTGAA+CGG | - | chr5_2:25273038-25273057 | None:intergenic | 30.0% |
| AAAATTGCCCTTAACATCAA+AGG | + | chr5_2:25273062-25273081 | Msa0764820:CDS | 30.0% | |
| ATCCAATCCTTTGATGTTAA+GGG | - | chr5_2:25273072-25273091 | None:intergenic | 30.0% | |
| AATCCAATCCTTTGATGTTA+AGG | - | chr5_2:25273073-25273092 | None:intergenic | 30.0% | |
| !!! | ACTGGAATTTTTTTGTACAC+AGG | - | chr5_2:25273152-25273171 | None:intergenic | 30.0% |
| AAAATTCCAGTTCTCATTCA+TGG | + | chr5_2:25273161-25273180 | Msa0764820:CDS | 30.0% | |
| TATGATTGCAGATTCACAAA+TGG | - | chr5_2:25273195-25273214 | None:intergenic | 30.0% | |
| AAATACCTTGTCATCAATGT+AGG | - | chr5_2:25273315-25273334 | None:intergenic | 30.0% | |
| ! | ATTGATGACAAGGTATTTCT+AGG | + | chr5_2:25273317-25273336 | Msa0764820:intron | 30.0% |
| !!! | TTTTTTTCGATAGTGATGCT+TGG | - | chr5_2:25273439-25273458 | None:intergenic | 30.0% |
| AAAAAACATTGTGCATTGTG+GGG | - | chr5_2:25273507-25273526 | None:intergenic | 30.0% | |
| !!! | ACTTTTAAAACCTGCTAACA+TGG | + | chr5_2:25273639-25273658 | Msa0764820:intron | 30.0% |
| !!! | GACTAGTTCTTGTTTTACTA+GGG | - | chr5_2:25273750-25273769 | None:intergenic | 30.0% |
| AACATGATTCAATAGGAAGA+AGG | - | chr5_2:25273943-25273962 | None:intergenic | 30.0% | |
| GACAAACAACATGATTCAAT+AGG | - | chr5_2:25273950-25273969 | None:intergenic | 30.0% | |
| !!! | AGTGAAGGAAATGTCTTTTT+TGG | + | chr5_2:25274113-25274132 | Msa0764820:CDS | 30.0% |
| !!! | TTTTTTGGAGGAGAGAAAAT+TGG | + | chr5_2:25274128-25274147 | Msa0764820:CDS | 30.0% |
| GAAACATTTCCCAATTACTT+TGG | - | chr5_2:25274368-25274387 | None:intergenic | 30.0% | |
| GCATATATTGAGAGGAAAAA+AGG | - | chr5_2:25272942-25272961 | None:intergenic | 30.0% | |
| ACTAGAATTTCCCTTAACAA+TGG | + | chr5_2:25272983-25273002 | Msa0764820:exon | 30.0% | |
| TCATTTGTAGCCATTGTTAA+GGG | - | chr5_2:25272996-25273015 | None:intergenic | 30.0% | |
| ! | TACAAATGACTTGAAGCTTT+TGG | + | chr5_2:25273007-25273026 | Msa0764820:CDS | 30.0% |
| ! | ACAAATGACTTGAAGCTTTT+GGG | + | chr5_2:25273008-25273027 | Msa0764820:CDS | 30.0% |
| !! | CTTAATACAAATGGACTGAA+CGG | - | chr5_2:25273038-25273057 | None:intergenic | 30.0% |
| AAAATTGCCCTTAACATCAA+AGG | + | chr5_2:25273062-25273081 | Msa0764820:CDS | 30.0% | |
| ATCCAATCCTTTGATGTTAA+GGG | - | chr5_2:25273072-25273091 | None:intergenic | 30.0% | |
| AATCCAATCCTTTGATGTTA+AGG | - | chr5_2:25273073-25273092 | None:intergenic | 30.0% | |
| !!! | ACTGGAATTTTTTTGTACAC+AGG | - | chr5_2:25273152-25273171 | None:intergenic | 30.0% |
| AAAATTCCAGTTCTCATTCA+TGG | + | chr5_2:25273161-25273180 | Msa0764820:CDS | 30.0% | |
| TATGATTGCAGATTCACAAA+TGG | - | chr5_2:25273195-25273214 | None:intergenic | 30.0% | |
| AAATACCTTGTCATCAATGT+AGG | - | chr5_2:25273315-25273334 | None:intergenic | 30.0% | |
| ! | ATTGATGACAAGGTATTTCT+AGG | + | chr5_2:25273317-25273336 | Msa0764820:intron | 30.0% |
| !!! | TTTTTTTCGATAGTGATGCT+TGG | - | chr5_2:25273439-25273458 | None:intergenic | 30.0% |
| AAAAAACATTGTGCATTGTG+GGG | - | chr5_2:25273507-25273526 | None:intergenic | 30.0% | |
| !!! | ACTTTTAAAACCTGCTAACA+TGG | + | chr5_2:25273639-25273658 | Msa0764820:intron | 30.0% |
| !!! | GACTAGTTCTTGTTTTACTA+GGG | - | chr5_2:25273750-25273769 | None:intergenic | 30.0% |
| AACATGATTCAATAGGAAGA+AGG | - | chr5_2:25273943-25273962 | None:intergenic | 30.0% | |
| GACAAACAACATGATTCAAT+AGG | - | chr5_2:25273950-25273969 | None:intergenic | 30.0% | |
| !!! | AGTGAAGGAAATGTCTTTTT+TGG | + | chr5_2:25274113-25274132 | Msa0764820:CDS | 30.0% |
| !!! | TTTTTTGGAGGAGAGAAAAT+TGG | + | chr5_2:25274128-25274147 | Msa0764820:CDS | 30.0% |
| GAAACATTTCCCAATTACTT+TGG | - | chr5_2:25274368-25274387 | None:intergenic | 30.0% | |
| GTCATTTGTAGCCATTGTTA+AGG | - | chr5_2:25272997-25273016 | None:intergenic | 35.0% | |
| !!! | TGAAGAAGCAAGTCACTTTT+GGG | - | chr5_2:25273122-25273141 | None:intergenic | 35.0% |
| TTATCTCCATGAATGAGAAC+TGG | - | chr5_2:25273170-25273189 | None:intergenic | 35.0% | |
| CATAAGCATTTGAAGGAAGA+AGG | - | chr5_2:25273265-25273284 | None:intergenic | 35.0% | |
| AATTACTCAAAGACATGGAC+AGG | - | chr5_2:25273386-25273405 | None:intergenic | 35.0% | |
| CATCATATCTCTAACCATCA+TGG | - | chr5_2:25273470-25273489 | None:intergenic | 35.0% | |
| CATGATGGTTAGAGATATGA+TGG | + | chr5_2:25273468-25273487 | Msa0764820:intron | 35.0% | |
| !!! | TTTTTTACAAAGCTCAGCCA+TGG | + | chr5_2:25273583-25273602 | Msa0764820:intron | 35.0% |
| ! | TTTTTACAAAGCTCAGCCAT+GGG | + | chr5_2:25273584-25273603 | Msa0764820:intron | 35.0% |
| !!! | AGTTCTTGTTTTACTAGGGT+TGG | - | chr5_2:25273746-25273765 | None:intergenic | 35.0% |
| !!! | GGACTAGTTCTTGTTTTACT+AGG | - | chr5_2:25273751-25273770 | None:intergenic | 35.0% |
| CACACACTGTTTAAGTCATT+TGG | - | chr5_2:25273784-25273803 | None:intergenic | 35.0% | |
| TGGTATAATTCCTCACGAAA+TGG | + | chr5_2:25273999-25274018 | Msa0764820:CDS | 35.0% | |
| TAAAGATGACGAGTCAAAGA+AGG | + | chr5_2:25274031-25274050 | Msa0764820:CDS | 35.0% | |
| !! | GAAGGCATATTTTGAGCAAA+TGG | + | chr5_2:25274049-25274068 | Msa0764820:CDS | 35.0% |
| GTGATCAACAAGTATAGTGA+AGG | + | chr5_2:25274098-25274117 | Msa0764820:CDS | 35.0% | |
| !!! | GAAGGAAATGTCTTTTTTGG+AGG | + | chr5_2:25274116-25274135 | Msa0764820:CDS | 35.0% |
| TGAGAAAATGACAGGAAAGA+AGG | + | chr5_2:25274199-25274218 | Msa0764820:CDS | 35.0% | |
| ACCAGAAACTGATAAACTTG+TGG | + | chr5_2:25274301-25274320 | Msa0764820:CDS | 35.0% | |
| TCCACAAGTTTATCAGTTTC+TGG | - | chr5_2:25274305-25274324 | None:intergenic | 35.0% | |
| !! | TAAACTTGTGGAGTTTGCTA+AGG | + | chr5_2:25274313-25274332 | Msa0764820:CDS | 35.0% |
| !! | AAACTTGTGGAGTTTGCTAA+GGG | + | chr5_2:25274314-25274333 | Msa0764820:CDS | 35.0% |
| !! | TAAGGGTTTTGTGCAAAGAA+TGG | + | chr5_2:25274331-25274350 | Msa0764820:CDS | 35.0% |
| TGCTTCTACTCCAAAGTAAT+TGG | + | chr5_2:25274355-25274374 | Msa0764820:exon | 35.0% | |
| GCTTCTACTCCAAAGTAATT+GGG | + | chr5_2:25274356-25274375 | Msa0764820:exon | 35.0% | |
| !! | GATTGACTTGTCTTCAAGAA+TGG | + | chr5_2:25274417-25274436 | Msa0764820:three_prime_UTR | 35.0% |
| ACTACTTGCTTAGTGATGTA+CGG | + | chr5_2:25274551-25274570 | Msa0764820:three_prime_UTR | 35.0% | |
| GTCATTTGTAGCCATTGTTA+AGG | - | chr5_2:25272997-25273016 | None:intergenic | 35.0% | |
| !!! | TGAAGAAGCAAGTCACTTTT+GGG | - | chr5_2:25273122-25273141 | None:intergenic | 35.0% |
| TTATCTCCATGAATGAGAAC+TGG | - | chr5_2:25273170-25273189 | None:intergenic | 35.0% | |
| CATAAGCATTTGAAGGAAGA+AGG | - | chr5_2:25273265-25273284 | None:intergenic | 35.0% | |
| AATTACTCAAAGACATGGAC+AGG | - | chr5_2:25273386-25273405 | None:intergenic | 35.0% | |
| CATCATATCTCTAACCATCA+TGG | - | chr5_2:25273470-25273489 | None:intergenic | 35.0% | |
| CATGATGGTTAGAGATATGA+TGG | + | chr5_2:25273468-25273487 | Msa0764820:intron | 35.0% | |
| !!! | TTTTTTACAAAGCTCAGCCA+TGG | + | chr5_2:25273583-25273602 | Msa0764820:intron | 35.0% |
| ! | TTTTTACAAAGCTCAGCCAT+GGG | + | chr5_2:25273584-25273603 | Msa0764820:intron | 35.0% |
| !!! | AGTTCTTGTTTTACTAGGGT+TGG | - | chr5_2:25273746-25273765 | None:intergenic | 35.0% |
| !!! | GGACTAGTTCTTGTTTTACT+AGG | - | chr5_2:25273751-25273770 | None:intergenic | 35.0% |
| CACACACTGTTTAAGTCATT+TGG | - | chr5_2:25273784-25273803 | None:intergenic | 35.0% | |
| TGGTATAATTCCTCACGAAA+TGG | + | chr5_2:25273999-25274018 | Msa0764820:CDS | 35.0% | |
| TAAAGATGACGAGTCAAAGA+AGG | + | chr5_2:25274031-25274050 | Msa0764820:CDS | 35.0% | |
| !! | GAAGGCATATTTTGAGCAAA+TGG | + | chr5_2:25274049-25274068 | Msa0764820:CDS | 35.0% |
| GTGATCAACAAGTATAGTGA+AGG | + | chr5_2:25274098-25274117 | Msa0764820:CDS | 35.0% | |
| !!! | GAAGGAAATGTCTTTTTTGG+AGG | + | chr5_2:25274116-25274135 | Msa0764820:CDS | 35.0% |
| TGAGAAAATGACAGGAAAGA+AGG | + | chr5_2:25274199-25274218 | Msa0764820:CDS | 35.0% | |
| ACCAGAAACTGATAAACTTG+TGG | + | chr5_2:25274301-25274320 | Msa0764820:CDS | 35.0% | |
| TCCACAAGTTTATCAGTTTC+TGG | - | chr5_2:25274305-25274324 | None:intergenic | 35.0% | |
| !! | TAAACTTGTGGAGTTTGCTA+AGG | + | chr5_2:25274313-25274332 | Msa0764820:CDS | 35.0% |
| !! | AAACTTGTGGAGTTTGCTAA+GGG | + | chr5_2:25274314-25274333 | Msa0764820:CDS | 35.0% |
| !! | TAAGGGTTTTGTGCAAAGAA+TGG | + | chr5_2:25274331-25274350 | Msa0764820:CDS | 35.0% |
| TGCTTCTACTCCAAAGTAAT+TGG | + | chr5_2:25274355-25274374 | Msa0764820:exon | 35.0% | |
| GCTTCTACTCCAAAGTAATT+GGG | + | chr5_2:25274356-25274375 | Msa0764820:exon | 35.0% | |
| !! | GATTGACTTGTCTTCAAGAA+TGG | + | chr5_2:25274417-25274436 | Msa0764820:three_prime_UTR | 35.0% |
| ACTACTTGCTTAGTGATGTA+CGG | + | chr5_2:25274551-25274570 | Msa0764820:three_prime_UTR | 35.0% | |
| TGCCCTTAACATCAAAGGAT+TGG | + | chr5_2:25273067-25273086 | Msa0764820:CDS | 40.0% | |
| !!! | CAAGTCACTTTTGGGATTCA+TGG | - | chr5_2:25273114-25273133 | None:intergenic | 40.0% |
| !! | CTGAAGAAGCAAGTCACTTT+TGG | - | chr5_2:25273123-25273142 | None:intergenic | 40.0% |
| GCTCGATCATAAGCATTTGA+AGG | - | chr5_2:25273272-25273291 | None:intergenic | 40.0% | |
| ! | ATCGAGCCATTGCGAAATTT+TGG | + | chr5_2:25273285-25273304 | Msa0764820:CDS | 40.0% |
| ! | TCGAGCCATTGCGAAATTTT+GGG | + | chr5_2:25273286-25273305 | Msa0764820:CDS | 40.0% |
| TCTTTCAACACCATGTTAGC+AGG | - | chr5_2:25273652-25273671 | None:intergenic | 40.0% | |
| AAGTCATTTGGACTCGCTAT+AGG | - | chr5_2:25273772-25273791 | None:intergenic | 40.0% | |
| AGCAATCAAACCATTTCGTG+AGG | - | chr5_2:25274012-25274031 | None:intergenic | 40.0% | |
| !! | AAATGGAAGAAGTGCTTGTG+AGG | + | chr5_2:25274066-25274085 | Msa0764820:CDS | 40.0% |
| !! | CTTTTGGGTCCTATTTGAGT+TGG | + | chr5_2:25274165-25274184 | Msa0764820:CDS | 40.0% |
| !! | GTCCTATTTGAGTTGGTTGA+GGG | + | chr5_2:25274172-25274191 | Msa0764820:CDS | 40.0% |
| TGAAACAAAGACTCCAGCTT+TGG | + | chr5_2:25274229-25274248 | Msa0764820:CDS | 40.0% | |
| TGCCCTTAACATCAAAGGAT+TGG | + | chr5_2:25273067-25273086 | Msa0764820:CDS | 40.0% | |
| !!! | CAAGTCACTTTTGGGATTCA+TGG | - | chr5_2:25273114-25273133 | None:intergenic | 40.0% |
| !! | CTGAAGAAGCAAGTCACTTT+TGG | - | chr5_2:25273123-25273142 | None:intergenic | 40.0% |
| GCTCGATCATAAGCATTTGA+AGG | - | chr5_2:25273272-25273291 | None:intergenic | 40.0% | |
| ! | ATCGAGCCATTGCGAAATTT+TGG | + | chr5_2:25273285-25273304 | Msa0764820:CDS | 40.0% |
| ! | TCGAGCCATTGCGAAATTTT+GGG | + | chr5_2:25273286-25273305 | Msa0764820:CDS | 40.0% |
| TCTTTCAACACCATGTTAGC+AGG | - | chr5_2:25273652-25273671 | None:intergenic | 40.0% | |
| AAGTCATTTGGACTCGCTAT+AGG | - | chr5_2:25273772-25273791 | None:intergenic | 40.0% | |
| AGCAATCAAACCATTTCGTG+AGG | - | chr5_2:25274012-25274031 | None:intergenic | 40.0% | |
| !! | AAATGGAAGAAGTGCTTGTG+AGG | + | chr5_2:25274066-25274085 | Msa0764820:CDS | 40.0% |
| !! | CTTTTGGGTCCTATTTGAGT+TGG | + | chr5_2:25274165-25274184 | Msa0764820:CDS | 40.0% |
| !! | GTCCTATTTGAGTTGGTTGA+GGG | + | chr5_2:25274172-25274191 | Msa0764820:CDS | 40.0% |
| TGAAACAAAGACTCCAGCTT+TGG | + | chr5_2:25274229-25274248 | Msa0764820:CDS | 40.0% | |
| GGCAACCCAAAATTTCGCAA+TGG | - | chr5_2:25273294-25273313 | None:intergenic | 45.0% | |
| ! | GGTTGCCTACATTGATGACA+AGG | + | chr5_2:25273307-25273326 | Msa0764820:CDS | 45.0% |
| GGTTTCAATTGGGAGAGTAG+TGG | + | chr5_2:25273979-25273998 | Msa0764820:intron | 45.0% | |
| !! | GGTCCTATTTGAGTTGGTTG+AGG | + | chr5_2:25274171-25274190 | Msa0764820:CDS | 45.0% |
| GACCCTCAACCAACTCAAAT+AGG | - | chr5_2:25274177-25274196 | None:intergenic | 45.0% | |
| AGGGTCACTGAGAAAATGAC+AGG | + | chr5_2:25274191-25274210 | Msa0764820:CDS | 45.0% | |
| ! | AGACTCCAGCTTTGGTGAAA+TGG | + | chr5_2:25274237-25274256 | Msa0764820:CDS | 45.0% |
| ! | GACTCCAGCTTTGGTGAAAT+GGG | + | chr5_2:25274238-25274257 | Msa0764820:CDS | 45.0% |
| GGCAACCCAAAATTTCGCAA+TGG | - | chr5_2:25273294-25273313 | None:intergenic | 45.0% | |
| ! | GGTTGCCTACATTGATGACA+AGG | + | chr5_2:25273307-25273326 | Msa0764820:CDS | 45.0% |
| GGTTTCAATTGGGAGAGTAG+TGG | + | chr5_2:25273979-25273998 | Msa0764820:intron | 45.0% | |
| !! | GGTCCTATTTGAGTTGGTTG+AGG | + | chr5_2:25274171-25274190 | Msa0764820:CDS | 45.0% |
| GACCCTCAACCAACTCAAAT+AGG | - | chr5_2:25274177-25274196 | None:intergenic | 45.0% | |
| AGGGTCACTGAGAAAATGAC+AGG | + | chr5_2:25274191-25274210 | Msa0764820:CDS | 45.0% | |
| ! | AGACTCCAGCTTTGGTGAAA+TGG | + | chr5_2:25274237-25274256 | Msa0764820:CDS | 45.0% |
| ! | GACTCCAGCTTTGGTGAAAT+GGG | + | chr5_2:25274238-25274257 | Msa0764820:CDS | 45.0% |
| !!! | ATGTATTTTTTTAAAAATTT+TGG | + | chr5_2:25274480-25274499 | Msa0764820:three_prime_UTR | 5.0% |
| !!! | ATGTATTTTTTTAAAAATTT+TGG | + | chr5_2:25274480-25274499 | Msa0764820:three_prime_UTR | 5.0% |
| TGGACTCAGATTCTCTCCCA+TGG | - | chr5_2:25273603-25273622 | None:intergenic | 50.0% | |
| !! | GGAAGAAGTGCTTGTGAGGT+TGG | + | chr5_2:25274070-25274089 | Msa0764820:CDS | 50.0% |
| TCAGCCCATTTCACCAAAGC+TGG | - | chr5_2:25274245-25274264 | None:intergenic | 50.0% | |
| TGCTGCTGATCCTTCTGTGA+AGG | + | chr5_2:25274271-25274290 | Msa0764820:CDS | 50.0% | |
| GCTGCTGATCCTTCTGTGAA+GGG | + | chr5_2:25274272-25274291 | Msa0764820:CDS | 50.0% | |
| GGTAGAACTCCCTTCACAGA+AGG | - | chr5_2:25274284-25274303 | None:intergenic | 50.0% | |
| TGGACTCAGATTCTCTCCCA+TGG | - | chr5_2:25273603-25273622 | None:intergenic | 50.0% | |
| !! | GGAAGAAGTGCTTGTGAGGT+TGG | + | chr5_2:25274070-25274089 | Msa0764820:CDS | 50.0% |
| TCAGCCCATTTCACCAAAGC+TGG | - | chr5_2:25274245-25274264 | None:intergenic | 50.0% | |
| TGCTGCTGATCCTTCTGTGA+AGG | + | chr5_2:25274271-25274290 | Msa0764820:CDS | 50.0% | |
| GCTGCTGATCCTTCTGTGAA+GGG | + | chr5_2:25274272-25274291 | Msa0764820:CDS | 50.0% | |
| GGTAGAACTCCCTTCACAGA+AGG | - | chr5_2:25274284-25274303 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 25272940 | 25274606 | 25272940 | ID=Msa0764820;Name=Msa0764820 |
| chr5_2 | mRNA | 25272940 | 25274606 | 25272940 | ID=Msa0764820-mRNA-1;Parent=Msa0764820;Name=Msa0764820-mRNA-1;_AED=0.02;_eAED=0.02;_QI=62|1|1|1|1|1|2|233|233 |
| chr5_2 | exon | 25272940 | 25273328 | 25272940 | ID=Msa0764820-mRNA-1:exon:10157;Parent=Msa0764820-mRNA-1 |
| chr5_2 | exon | 25273999 | 25274606 | 25273999 | ID=Msa0764820-mRNA-1:exon:10158;Parent=Msa0764820-mRNA-1 |
| chr5_2 | five_prime_UTR | 25272940 | 25273001 | 25272940 | ID=Msa0764820-mRNA-1:five_prime_utr;Parent=Msa0764820-mRNA-1 |
| chr5_2 | CDS | 25273002 | 25273328 | 25273002 | ID=Msa0764820-mRNA-1:cds;Parent=Msa0764820-mRNA-1 |
| chr5_2 | CDS | 25273999 | 25274373 | 25273999 | ID=Msa0764820-mRNA-1:cds;Parent=Msa0764820-mRNA-1 |
| chr5_2 | three_prime_UTR | 25274374 | 25274606 | 25274374 | ID=Msa0764820-mRNA-1:three_prime_utr;Parent=Msa0764820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
