AlfalfaGEDB | Msa0849280

M. sativa cultivar zhongmu-4 / Msa0849280

KEGG: -
GO: GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402
PFAM: PF03171.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0849280	XP_003614581.1	92.903	155	11	0	1	155	181	335	3.19e-98	301

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0849280	sp\|Q39224\|SRG1_ARATH	59.615	156	60	2	1	153	189	344	2.01e-62	203

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0849280	G7K0H0	92.903	155	11	0	1	155	181	335	1.52e-98	301

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0019600	Msa0849280	0.827196	1.787937e-54	-8.615850e-47
Msa0124130	Msa0849280	0.810171	1.315966e-50	-8.615850e-47
Msa0149140	Msa0849280	0.822462	2.338972e-53	-8.615850e-47
Msa0156250	Msa0849280	0.831127	1.991079e-55	-8.615850e-47
Msa0197100	Msa0849280	0.816884	4.393126e-52	-8.615850e-47
Msa0212080	Msa0849280	0.818112	2.323592e-52	-8.615850e-47
Msa0212150	Msa0849280	0.842764	2.118087e-58	-8.615850e-47
Msa0219190	Msa0849280	0.831292	1.813393e-55	-8.615850e-47
Msa0221290	Msa0849280	0.805825	1.107118e-49	-8.615850e-47
Msa0239030	Msa0849280	0.834150	3.539117e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0849280	MtrunA17_Chr5g0423211	92.903	155	11	0	1	155	184	338	4.20e-102	301
Msa0849280	MtrunA17_Chr5g0421091	75.776	161	37	2	1	159	179	339	1.09e-84	257
Msa0849280	MtrunA17_Chr5g0420901	73.125	160	42	1	1	159	180	339	1.61e-83	254
Msa0849280	MtrunA17_Chr5g0420941	75.641	156	37	1	1	155	179	334	2.79e-81	248
Msa0849280	MtrunA17_Chr8g0365241	72.436	156	42	1	1	155	192	347	5.48e-80	245
Msa0849280	MtrunA17_Chr5g0420981	72.078	154	42	1	1	153	188	341	1.98e-78	241
Msa0849280	MtrunA17_Chr5g0420951	70.513	156	45	1	1	155	188	343	1.02e-76	236
Msa0849280	MtrunA17_Chr5g0420881	75.735	136	32	1	25	159	1	136	5.58e-75	225
Msa0849280	MtrunA17_Chr5g0420721	67.308	156	50	1	1	155	83	238	2.34e-74	227
Msa0849280	MtrunA17_Chr5g0423191	66.667	156	51	1	1	155	181	336	3.41e-73	228

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0849280	AT1G17020.1	59.615	156	60	2	1	153	189	344	2.04e-63	203
Msa0849280	AT4G25310.1	59.355	155	61	2	1	153	185	339	7.49e-60	193
Msa0849280	AT1G78550.2	55.128	156	69	1	1	155	111	266	1.12e-59	191
Msa0849280	AT1G17010.1	57.143	161	67	2	1	159	190	350	1.17e-59	193
Msa0849280	AT1G78550.1	55.128	156	69	1	1	155	189	344	9.40e-59	191
Msa0849280	AT4G25300.2	57.895	152	62	2	4	153	97	248	4.71e-58	186
Msa0849280	AT4G25300.1	57.895	152	62	2	4	153	191	342	9.41e-57	186
Msa0849280	AT3G21420.1	45.625	160	84	3	4	160	196	355	2.02e-43	151
Msa0849280	AT4G25310.2	56.557	122	50	2	33	153	192	311	3.37e-38	136
Msa0849280	AT2G38240.1	45.395	152	77	3	1	147	181	331	3.93e-38	137

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Find 88 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACGATGTTATATTTATGCA+AGG	0.550177	5_4:+35779940	None:intergenic
AAGAGATGGATCAGTCAATA+AGG	0.409662	5_4:-35779777	Msa0849280:CDS
AATAAATCTAGCAATTCATT+TGG	0.381210	5_4:+35779802	None:intergenic
AATAAGCGTCGTGGACAGAG+GGG	0.704645	5_4:-35777959	Msa0849280:CDS
AATCGAAGAGTTGATCAAGA+GGG	0.605346	5_4:-35778124	Msa0849280:CDS
ACCACAAAAGCATTAGAAAG+GGG	0.597355	5_4:+35779607	None:intergenic
ACCTTAGGGCATGACGTACC+AGG	0.541132	5_4:-35777731	Msa0849280:CDS
ACGACGCTTATTACCTTCCT+CGG	0.452158	5_4:+35777970	None:intergenic
ACTCCGCGGAACTTCACTAA+TGG	0.458887	5_4:-35777908	Msa0849280:CDS
ACTTCACTAATGGCACGACC+AGG	0.618099	5_4:-35777898	Msa0849280:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCTAGATTTATTTGAAGAGA+TGG	-	chr5_4:35777887-35777906	Msa0849280:CDS	30.0%
TTCATTTACTTCAAGAAGGA+TGG	+	chr5_4:35778003-35778022	None:intergenic	30.0%
GGACTTCAAATCAAAAAAGA+TGG	-	chr5_4:35778029-35778048	Msa0849280:intron	30.0%
CGATTTGTAAGTAATTGTGT+TGG	+	chr5_4:35778123-35778142	None:intergenic	30.0%
AACTAGGTAATAGAGTGAAA+GGG	-	chr5_4:35778628-35778647	Msa0849280:intron	30.0%
CCTTCAAAAATTCATCAACA+CGG	-	chr5_4:35779400-35779419	Msa0849280:intron	30.0%
GCTAGATTTATTTGAAGAGA+TGG	-	chr5_4:35777887-35777906	Msa0849280:CDS	30.0%
TTCATTTACTTCAAGAAGGA+TGG	+	chr5_4:35778003-35778022	None:intergenic	30.0%
GGACTTCAAATCAAAAAAGA+TGG	-	chr5_4:35778029-35778048	Msa0849280:intron	30.0%
CGATTTGTAAGTAATTGTGT+TGG	+	chr5_4:35778123-35778142	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	35777724	35779976	35777724	ID=Msa0849280;Name=Msa0849280
chr5_4	mRNA	35777724	35779976	35777724	ID=Msa0849280-mRNA-1;Parent=Msa0849280;Name=Msa0849280-mRNA-1;_AED=0.31;_eAED=0.31;_QI=128\|0.33\|0.25\|0.5\|1\|1\|4\|0\|266
chr5_4	exon	35777724	35778008	35777724	ID=Msa0849280-mRNA-1:exon:11933;Parent=Msa0849280-mRNA-1
chr5_4	exon	35778102	35778152	35778102	ID=Msa0849280-mRNA-1:exon:11932;Parent=Msa0849280-mRNA-1
chr5_4	exon	35778749	35778949	35778749	ID=Msa0849280-mRNA-1:exon:11931;Parent=Msa0849280-mRNA-1
chr5_4	exon	35779585	35779976	35779585	ID=Msa0849280-mRNA-1:exon:11930;Parent=Msa0849280-mRNA-1
chr5_4	five_prime_UTR	35779849	35779976	35779849	ID=Msa0849280-mRNA-1:five_prime_utr;Parent=Msa0849280-mRNA-1
chr5_4	CDS	35779585	35779848	35779585	ID=Msa0849280-mRNA-1:cds;Parent=Msa0849280-mRNA-1
chr5_4	CDS	35778749	35778949	35778749	ID=Msa0849280-mRNA-1:cds;Parent=Msa0849280-mRNA-1
chr5_4	CDS	35778102	35778152	35778102	ID=Msa0849280-mRNA-1:cds;Parent=Msa0849280-mRNA-1
chr5_4	CDS	35777724	35778008	35777724	ID=Msa0849280-mRNA-1:cds;Parent=Msa0849280-mRNA-1

Gene Sequence

>Msa0849280

ATGACTAAAGCTCTAAAGCTTCAACCAAATGAATTGCTAGATTTATTTGAAGAGATGGATCAGTCAATAAGGATGAATTACTATCCTCCATGTCCCCAACCAGAACAAGTGATTGGACTTAATCCTCACTCTGATGGTGTTGCCCTTACCATCCTTCTTGAAGTAAATGAAATTCAAGGACTTCAAATCAAAAAAGATGGAATATGGATTCCCATCAAACCCCTTTCTAATGCTTTTGTGGTCAATATTGGAGATATGTTGGAGATTCTAAGCAATGGAACATACCAGAGCATCGAACATAGAGCAACAGTAAATTCAGAGAAGGAGAGGATCTCATTTGCTGCATTTCACAGTCCTCATAGGGGTGATATAGGTCCAGCACCAAGTCTTGTTACTCCTAAAAGTCCTGCATTATTTAAAACCATTTCAATTGCAGATTACGTCAATGGATACCTCTCAAGCAAGGGACGCAATCGAAGAGTTGATCAAGAGGGGGAAGTTGAACCGCTTCACGAGACAGGAAGAGTCACGCCCGAGGAAGGTAATAAGCGTCGTGGACAGAGGGGACAAGGAGCCATCATGGGAGGATTCGCCACTCCGCGGAACTTCACTAATGGCACGACCAGGAGGAAATGTGCCCAACTCATGGCAGTACACGCTGCTACGGCGAGACCAAAGGGCGGGACAACTAGACCCATCCTAGGTTTCACCGACGAAGAAAAGGTGAACAGAGGCTCCAATGAAATGTTCCCGCATTTCATCATCACAGGAACCTTAGGGCATGACGTACCAGGTGCATAA

Protein sequence

>Msa0849280

MTKALKLQPNELLDLFEEMDQSIRMNYYPPCPQPEQVIGLNPHSDGVALTILLEVNEIQGLQIKKDGIWIPIKPLSNAFVVNIGDMLEILSNGTYQSIEHRATVNSEKERISFAAFHSPHRGDIGPAPSLVTPKSPALFKTISIADYVNGYLSSKGRNRRVDQEGEVEPLHETGRVTPEEGNKRRGQRGQGAIMGGFATPRNFTNGTTRRKCAQLMAVHAATARPKGGTTRPILGFTDEEKVNRGSNEMFPHFIITGTLGHDVPGA*