Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0841130 | XP_024640501.2 | 66.424 | 688 | 130 | 7 | 1 | 589 | 28 | 713 | 0.0 | 882 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0841130 | A0A396HTM3 | 66.383 | 705 | 120 | 10 | 1 | 590 | 32 | 734 | 0.0 | 871 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0048950 | Msa0841130 | 0.812392 | 4.338816e-51 | -8.615850e-47 |
| Msa0059880 | Msa0841130 | 0.864957 | 8.364061e-65 | -8.615850e-47 |
| Msa0072030 | Msa0841130 | 0.800899 | 1.160795e-48 | -8.615850e-47 |
| Msa0605400 | Msa0841130 | 0.812466 | 4.180897e-51 | -8.615850e-47 |
| Msa0623980 | Msa0841130 | 0.835123 | 2.015800e-56 | -8.615850e-47 |
| Msa0631700 | Msa0841130 | 0.812044 | 5.168582e-51 | -8.615850e-47 |
| Msa0646210 | Msa0841130 | 0.805696 | 1.178537e-49 | -8.615850e-47 |
| Msa0670360 | Msa0841130 | 0.835518 | 1.601713e-56 | -8.615850e-47 |
| Msa0671640 | Msa0841130 | 0.829111 | 6.178113e-55 | -8.615850e-47 |
| Msa0684720 | Msa0841130 | 0.830440 | 2.934047e-55 | -8.615850e-47 |
| Msa0711240 | Msa0841130 | 0.802777 | 4.775098e-49 | -8.615850e-47 |
| Msa0719880 | Msa0841130 | 0.839246 | 1.777099e-57 | -8.615850e-47 |
| Msa0727480 | Msa0841130 | 0.832630 | 8.473172e-56 | -8.615850e-47 |
| Msa0735280 | Msa0841130 | 0.809620 | 1.729316e-50 | -8.615850e-47 |
| Msa0768670 | Msa0841130 | 0.813672 | 2.273637e-51 | -8.615850e-47 |
| Msa0768720 | Msa0841130 | 0.823073 | 1.685130e-53 | -8.615850e-47 |
| Msa0777070 | Msa0841130 | 0.826355 | 2.838410e-54 | -8.615850e-47 |
| Msa0802590 | Msa0841130 | 0.952438 | 2.423427e-110 | -8.615850e-47 |
| Msa0814160 | Msa0841130 | 0.814889 | 1.224056e-51 | -8.615850e-47 |
| Msa0841130 | Msa0841170 | 0.970748 | 4.314505e-132 | -8.615850e-47 |
| Msa0841130 | Msa0854840 | 0.825790 | 3.868503e-54 | -8.615850e-47 |
| Msa0841130 | Msa0883640 | 0.841058 | 5.979647e-58 | -8.615850e-47 |
| Msa0841130 | Msa0902340 | 0.818998 | 1.463091e-52 | -8.615850e-47 |
| Msa0841130 | Msa0910830 | 0.860989 | 1.405638e-63 | -8.615850e-47 |
| Msa0841130 | Msa0960090 | 0.844587 | 6.892723e-59 | -8.615850e-47 |
| Msa0841130 | Msa0967820 | 0.825670 | 4.129812e-54 | -8.615850e-47 |
| Msa0841130 | Msa0985700 | 0.843145 | 1.677464e-58 | -8.615850e-47 |
| Msa0841130 | Msa0993450 | 0.802935 | 4.430456e-49 | -8.615850e-47 |
| Msa0841130 | Msa1003110 | 0.816819 | 4.542909e-52 | -8.615850e-47 |
| Msa0841130 | Msa1007940 | 0.801898 | 7.245785e-49 | -8.615850e-47 |
| Msa0841130 | Msa1007950 | 0.803421 | 3.513764e-49 | -8.615850e-47 |
| Msa0841130 | Msa1020540 | 0.842005 | 3.367675e-58 | -8.615850e-47 |
| Msa0841130 | Msa1021620 | 0.851162 | 1.061954e-60 | -8.615850e-47 |
| Msa0841130 | Msa1024350 | 0.845122 | 4.945394e-59 | -8.615850e-47 |
| Msa0841130 | Msa1026050 | 0.806547 | 7.800956e-50 | -8.615850e-47 |
| Msa0841130 | Msa1041630 | 0.800923 | 1.147355e-48 | -8.615850e-47 |
| Msa0841130 | Msa1061670 | 0.820181 | 7.856021e-53 | -8.615850e-47 |
| Msa0841130 | Msa1081610 | 0.805424 | 1.344001e-49 | -8.615850e-47 |
| Msa0841130 | Msa1087380 | 0.814689 | 1.355830e-51 | -8.615850e-47 |
| Msa0841130 | Msa1106960 | 0.805546 | 1.267114e-49 | -8.615850e-47 |
| Msa0841130 | Msa1109880 | 0.822106 | 2.828275e-53 | -8.615850e-47 |
| Msa0841130 | Msa1109890 | 0.852736 | 3.796952e-61 | -8.615850e-47 |
| Msa0841130 | Msa1133860 | 0.813262 | 2.797902e-51 | -8.615850e-47 |
| Msa0841130 | Msa1138110 | 0.804435 | 2.163527e-49 | -8.615850e-47 |
| Msa0841130 | Msa1149020 | 0.843151 | 1.670906e-58 | -8.615850e-47 |
| Msa0841130 | Msa1152180 | 0.809411 | 1.917643e-50 | -8.615850e-47 |
| Msa0841130 | Msa1166530 | 0.800411 | 1.459321e-48 | -8.615850e-47 |
| Msa0841130 | Msa1214960 | 0.808487 | 3.023211e-50 | -8.615850e-47 |
| Msa0841130 | Msa1216600 | 0.818504 | 1.893383e-52 | -8.615850e-47 |
| Msa0841130 | Msa1286420 | 0.809007 | 2.340971e-50 | -8.615850e-47 |
| Msa0841130 | Msa1296870 | 0.830561 | 2.740021e-55 | -8.615850e-47 |
| Msa0841130 | Msa1300610 | 0.826336 | 2.868298e-54 | -8.615850e-47 |
| Msa0841130 | Msa1323030 | 0.827234 | 1.750661e-54 | -8.615850e-47 |
| Msa0841130 | Msa1323120 | 0.804201 | 2.419901e-49 | -8.615850e-47 |
| Msa0841130 | Msa1323160 | 0.802176 | 6.350724e-49 | -8.615850e-47 |
| Msa0841130 | Msa1329740 | 0.815361 | 9.618399e-52 | -8.615850e-47 |
| Msa0841130 | Msa1357490 | 0.805017 | 1.635169e-49 | -8.615850e-47 |
| Msa0841130 | Msa1357750 | 0.803413 | 3.528209e-49 | -8.615850e-47 |
| Msa0841130 | Msa1373560 | 0.810685 | 1.019605e-50 | -8.615850e-47 |
| Msa0841130 | Msa1440400 | 0.941898 | 1.862828e-101 | -8.615850e-47 |
| Msa0841130 | Msa1459610 | 0.824803 | 6.622492e-54 | -8.615850e-47 |
| Msa0139460 | Msa0841130 | 0.801143 | 1.034902e-48 | -8.615850e-47 |
| Msa0143680 | Msa0841130 | 0.919088 | 6.961603e-87 | -8.615850e-47 |
| Msa0143710 | Msa0841130 | 0.931289 | 4.704594e-94 | -8.615850e-47 |
| Msa0143740 | Msa0841130 | 0.950010 | 3.970734e-108 | -8.615850e-47 |
| Msa0143770 | Msa0841130 | 0.946593 | 3.434916e-105 | -8.615850e-47 |
| Msa0150910 | Msa0841130 | 0.833228 | 6.015465e-56 | -8.615850e-47 |
| Msa0163340 | Msa0841130 | 0.806713 | 7.198567e-50 | -8.615850e-47 |
| Msa0190670 | Msa0841130 | 0.824429 | 8.108960e-54 | -8.615850e-47 |
| Msa0212550 | Msa0841130 | 0.805135 | 1.544885e-49 | -8.615850e-47 |
| Msa0414480 | Msa0841130 | 0.801584 | 8.404077e-49 | -8.615850e-47 |
| Msa0469550 | Msa0841130 | 0.800100 | 1.688233e-48 | -8.615850e-47 |
| Msa0252930 | Msa0841130 | 0.817288 | 3.563537e-52 | -8.615850e-47 |
| Msa0259110 | Msa0841130 | 0.809747 | 1.623971e-50 | -8.615850e-47 |
| Msa0278950 | Msa0841130 | 0.819559 | 1.090077e-52 | -8.615850e-47 |
| Msa0298270 | Msa0841130 | 0.806821 | 6.828559e-50 | -8.615850e-47 |
| Msa0336070 | Msa0841130 | 0.808132 | 3.599369e-50 | -8.615850e-47 |
| Msa0515260 | Msa0841130 | 0.800528 | 1.381869e-48 | -8.615850e-47 |
| Msa0535570 | Msa0841130 | 0.806153 | 9.443673e-50 | -8.615850e-47 |
| Msa0538450 | Msa0841130 | 0.800210 | 1.603830e-48 | -8.615850e-47 |
| Msa0540100 | Msa0841130 | 0.818563 | 1.835959e-52 | -8.615850e-47 |
| Msa0548970 | Msa0841130 | 0.820815 | 5.620227e-53 | -8.615850e-47 |
| Msa0549920 | Msa0841130 | 0.813548 | 2.421525e-51 | -8.615850e-47 |
| Msa0549930 | Msa0841130 | 0.802753 | 4.829623e-49 | -8.615850e-47 |
| Msa0591490 | Msa0841130 | 0.828913 | 6.902703e-55 | -8.615850e-47 |
| Msa0594320 | Msa0841130 | 0.813284 | 2.767434e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0841130 | MtrunA17_Chr5g0410171 | 66.383 | 705 | 120 | 10 | 1 | 590 | 32 | 734 | 0.0 | 871 |
| Msa0841130 | MtrunA17_Chr5g0410341 | 88.358 | 335 | 6 | 2 | 288 | 589 | 411 | 745 | 0.0 | 585 |
| Msa0841130 | MtrunA17_Chr5g0410341 | 87.859 | 313 | 14 | 4 | 1 | 289 | 30 | 342 | 0.0 | 555 |
| Msa0841130 | MtrunA17_Chr5g0410201 | 77.744 | 328 | 40 | 2 | 296 | 590 | 1 | 328 | 1.25e-178 | 508 |
| Msa0841130 | MtrunA17_Chr5g0410271 | 77.538 | 325 | 40 | 2 | 298 | 589 | 2 | 326 | 3.09e-175 | 499 |
| Msa0841130 | MtrunA17_Chr6g0457101 | 41.333 | 675 | 291 | 16 | 1 | 588 | 30 | 686 | 7.67e-149 | 446 |
| Msa0841130 | MtrunA17_Chr5g0410461 | 52.660 | 376 | 135 | 7 | 260 | 594 | 96 | 469 | 6.48e-113 | 346 |
| Msa0841130 | MtrunA17_Chr6g0456141 | 52.035 | 344 | 124 | 6 | 288 | 597 | 51 | 387 | 2.79e-111 | 338 |
| Msa0841130 | MtrunA17_Chr6g0456101 | 36.262 | 717 | 311 | 24 | 1 | 583 | 30 | 734 | 1.35e-108 | 343 |
| Msa0841130 | MtrunA17_Chr5g0410371 | 59.122 | 296 | 82 | 4 | 329 | 587 | 1 | 294 | 1.72e-102 | 313 |
| Msa0841130 | MtrunA17_Chr5g0410191 | 80.745 | 161 | 31 | 0 | 429 | 589 | 32 | 192 | 6.04e-83 | 258 |
| Msa0841130 | MtrunA17_Chr5g0410581 | 31.410 | 780 | 327 | 25 | 1 | 590 | 31 | 792 | 7.83e-82 | 273 |
| Msa0841130 | MtrunA17_Chr5g0410291 | 67.358 | 193 | 40 | 5 | 110 | 283 | 1 | 189 | 4.38e-77 | 243 |
| Msa0841130 | MtrunA17_Chr5g0410211 | 63.918 | 194 | 50 | 4 | 110 | 283 | 1 | 194 | 6.62e-71 | 227 |
| Msa0841130 | MtrunA17_Chr5g0410181 | 78.947 | 133 | 28 | 0 | 457 | 589 | 1 | 133 | 3.20e-67 | 215 |
| Msa0841130 | MtrunA17_Chr2g0297701 | 31.148 | 549 | 302 | 17 | 90 | 586 | 44 | 568 | 7.11e-61 | 212 |
| Msa0841130 | MtrunA17_Chr5g0443001 | 31.336 | 584 | 301 | 21 | 91 | 587 | 31 | 601 | 2.86e-57 | 203 |
| Msa0841130 | MtrunA17_Chr2g0297691 | 27.039 | 699 | 392 | 24 | 4 | 609 | 36 | 709 | 3.72e-52 | 191 |
| Msa0841130 | MtrunA17_Chr2g0297681 | 26.984 | 693 | 398 | 21 | 4 | 609 | 36 | 707 | 1.28e-49 | 183 |
| Msa0841130 | MtrunA17_Chr2g0297651 | 26.627 | 676 | 387 | 21 | 4 | 590 | 38 | 693 | 2.49e-49 | 182 |
| Msa0841130 | MtrunA17_Chr3g0100741 | 26.381 | 561 | 318 | 12 | 91 | 570 | 33 | 579 | 6.40e-47 | 174 |
| Msa0841130 | MtrunA17_Chr5g0410451 | 49.123 | 171 | 82 | 1 | 429 | 594 | 71 | 241 | 1.51e-46 | 164 |
| Msa0841130 | MtrunA17_Chr2g0297491 | 34.591 | 318 | 161 | 7 | 329 | 609 | 88 | 395 | 5.31e-46 | 167 |
| Msa0841130 | MtrunA17_Chr5g0410541 | 52.121 | 165 | 73 | 2 | 429 | 588 | 53 | 216 | 1.67e-43 | 155 |
| Msa0841130 | MtrunA17_Chr6g0456151 | 42.023 | 257 | 118 | 9 | 1 | 236 | 30 | 276 | 1.22e-42 | 155 |
| Msa0841130 | MtrunA17_Chr5g0410471 | 45.909 | 220 | 105 | 5 | 5 | 221 | 105 | 313 | 8.68e-41 | 150 |
| Msa0841130 | MtrunA17_Chr2g0297481 | 32.588 | 313 | 170 | 7 | 329 | 609 | 186 | 489 | 1.98e-40 | 154 |
| Msa0841130 | MtrunA17_Chr3g0100301 | 41.327 | 196 | 78 | 2 | 418 | 583 | 209 | 397 | 6.11e-39 | 148 |
| Msa0841130 | MtrunA17_Chr3g0096941 | 24.740 | 578 | 333 | 15 | 91 | 581 | 33 | 595 | 1.40e-38 | 150 |
| Msa0841130 | MtrunA17_Chr2g0297711 | 26.542 | 535 | 301 | 17 | 90 | 587 | 47 | 526 | 8.02e-38 | 147 |
| Msa0841130 | MtrunA17_Chr5g0410411 | 39.464 | 261 | 107 | 9 | 1 | 221 | 30 | 279 | 2.44e-36 | 139 |
| Msa0841130 | MtrunA17_Chr5g0410381 | 39.837 | 246 | 101 | 8 | 82 | 286 | 3 | 242 | 4.33e-36 | 135 |
| Msa0841130 | MtrunA17_Chr5g0410251 | 65.060 | 83 | 29 | 0 | 1 | 83 | 28 | 110 | 3.12e-32 | 120 |
| Msa0841130 | MtrunA17_Chr2g0286601 | 32.765 | 293 | 153 | 6 | 311 | 569 | 371 | 653 | 7.09e-30 | 125 |
| Msa0841130 | MtrunA17_Chr5g0410511 | 39.881 | 168 | 96 | 1 | 429 | 591 | 32 | 199 | 1.20e-29 | 116 |
| Msa0841130 | MtrunA17_Chr5g0410501 | 45.139 | 144 | 73 | 3 | 289 | 428 | 147 | 288 | 1.50e-29 | 119 |
| Msa0841130 | MtrunA17_Chr3g0098481 | 28.931 | 318 | 172 | 8 | 316 | 587 | 22 | 331 | 3.11e-28 | 116 |
| Msa0841130 | MtrunA17_Chr3g0102001 | 29.276 | 304 | 165 | 6 | 328 | 588 | 440 | 736 | 2.76e-26 | 114 |
| Msa0841130 | MtrunA17_Chr2g0286551 | 24.664 | 596 | 319 | 16 | 94 | 583 | 83 | 654 | 1.28e-24 | 108 |
| Msa0841130 | MtrunA17_Chr2g0286561 | 38.849 | 139 | 78 | 1 | 431 | 569 | 47 | 178 | 2.55e-24 | 101 |
| Msa0841130 | MtrunA17_Chr5g0410551 | 50.476 | 105 | 46 | 3 | 329 | 429 | 1 | 103 | 2.84e-23 | 95.5 |
| Msa0841130 | MtrunA17_Chr1g0211541 | 25.541 | 462 | 250 | 18 | 101 | 508 | 6 | 427 | 2.17e-22 | 101 |
| Msa0841130 | MtrunA17_Chr3g0098301 | 26.861 | 309 | 182 | 8 | 316 | 583 | 88 | 393 | 3.75e-22 | 99.4 |
| Msa0841130 | MtrunA17_Chr5g0410561 | 37.321 | 209 | 120 | 7 | 32 | 236 | 2 | 203 | 7.78e-22 | 94.4 |
| Msa0841130 | MtrunA17_Chr5g0439081 | 36.076 | 158 | 94 | 3 | 428 | 580 | 41 | 196 | 3.75e-21 | 92.4 |
| Msa0841130 | MtrunA17_Chr2g0284541 | 28.391 | 317 | 184 | 7 | 300 | 581 | 322 | 630 | 1.31e-19 | 93.2 |
| Msa0841130 | MtrunA17_Chr3g0098531 | 27.234 | 235 | 136 | 4 | 385 | 585 | 48 | 281 | 3.81e-19 | 88.6 |
| Msa0841130 | MtrunA17_Chr5g0439061 | 27.740 | 292 | 172 | 5 | 329 | 583 | 437 | 726 | 8.73e-19 | 90.5 |
| Msa0841130 | MtrunA17_Chr2g0284501 | 28.041 | 296 | 168 | 7 | 322 | 581 | 362 | 648 | 1.20e-18 | 90.1 |
| Msa0841130 | MtrunA17_Chr5g0410441 | 48.889 | 90 | 40 | 3 | 344 | 429 | 1 | 88 | 2.58e-18 | 80.9 |
| Msa0841130 | MtrunA17_Chr3g0100921 | 40.650 | 123 | 72 | 1 | 448 | 569 | 2 | 124 | 8.18e-18 | 80.5 |
| Msa0841130 | MtrunA17_Chr5g0439051 | 34.591 | 159 | 102 | 2 | 429 | 586 | 50 | 207 | 1.09e-15 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0841130 | AT3G18670.1 | 35.751 | 579 | 281 | 19 | 70 | 587 | 35 | 583 | 4.60e-98 | 311 |
| Msa0841130 | AT3G18670.2 | 33.654 | 624 | 288 | 19 | 70 | 587 | 35 | 638 | 2.00e-95 | 306 |
| Msa0841130 | AT5G04690.3 | 30.756 | 582 | 312 | 14 | 81 | 587 | 66 | 631 | 2.69e-66 | 229 |
| Msa0841130 | AT5G04690.1 | 31.616 | 563 | 312 | 16 | 81 | 587 | 66 | 611 | 1.08e-64 | 224 |
| Msa0841130 | AT5G04690.2 | 30.201 | 596 | 311 | 15 | 81 | 587 | 66 | 645 | 5.92e-64 | 223 |
| Msa0841130 | AT5G04700.1 | 29.711 | 589 | 310 | 15 | 90 | 587 | 80 | 655 | 4.99e-61 | 215 |
| Msa0841130 | AT5G04680.3 | 28.767 | 584 | 316 | 17 | 90 | 587 | 67 | 636 | 1.09e-53 | 194 |
| Msa0841130 | AT5G04680.4 | 28.523 | 596 | 316 | 17 | 90 | 587 | 67 | 650 | 5.24e-52 | 190 |
| Msa0841130 | AT5G04730.1 | 29.795 | 537 | 284 | 16 | 138 | 587 | 58 | 588 | 4.34e-50 | 183 |
| Msa0841130 | AT5G04680.2 | 28.571 | 532 | 274 | 14 | 151 | 587 | 7 | 527 | 2.09e-48 | 177 |
| Msa0841130 | AT5G04680.1 | 27.564 | 624 | 315 | 22 | 90 | 587 | 67 | 679 | 5.59e-47 | 176 |
| Msa0841130 | AT5G35810.1 | 33.887 | 301 | 157 | 6 | 329 | 589 | 35 | 333 | 9.76e-47 | 168 |
| Msa0841130 | AT3G54065.1 | 39.535 | 172 | 68 | 2 | 415 | 550 | 8 | 179 | 1.30e-32 | 125 |
| Msa0841130 | AT5G04700.2 | 25.815 | 399 | 224 | 12 | 90 | 429 | 80 | 465 | 6.68e-24 | 105 |
| Msa0841130 | AT3G54070.1 | 28.324 | 173 | 111 | 6 | 66 | 232 | 24 | 189 | 6.46e-12 | 66.6 |
| Msa0841130 | AT5G35830.1 | 30.000 | 160 | 101 | 4 | 78 | 232 | 73 | 226 | 6.65e-12 | 67.0 |
Find 144 sgRNAs with CRISPR-Local
Find 306 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCACTTGGCAGGATATTT+AGG | 0.127030 | 5_4:-17104865 | Msa0841130:CDS |
| CCAAAGAATTCAAGAGTTTA+AGG | 0.157617 | 5_4:-17105142 | Msa0841130:CDS |
| TTCACTTGCTATGCTCTTAA+AGG | 0.220345 | 5_4:-17103857 | Msa0841130:CDS |
| CCTTAAACTCTTGAATTCTT+TGG | 0.238324 | 5_4:+17105142 | None:intergenic |
| TAAAGAAGCCTGGAATAAAT+TGG | 0.241875 | 5_4:-17108252 | Msa0841130:CDS |
| ATACATGATGCAACTGTAAA+TGG | 0.242921 | 5_4:-17104937 | Msa0841130:CDS |
| TTAGAACGCGCACCAATTTC+AGG | 0.251761 | 5_4:+17108380 | None:intergenic |
| TACATACCTTGCTCAATATC+TGG | 0.253912 | 5_4:+17108197 | None:intergenic |
| CTTCGCTATATTCGTGTTTC+CGG | 0.254247 | 5_4:+17107084 | None:intergenic |
| AATATATTCCACATCCTCTA+TGG | 0.260429 | 5_4:-17107245 | Msa0841130:CDS |
| GTGACCTCTATTCCTGAAAT+TGG | 0.292763 | 5_4:-17108392 | Msa0841130:CDS |
| TGCACTTGGCAGGATATTTA+GGG | 0.308043 | 5_4:-17104864 | Msa0841130:CDS |
| TTTCCAAGTGGTAGTGGATA+TGG | 0.311953 | 5_4:-17106651 | Msa0841130:CDS |
| ACTTCGGTCCTTCTCTTCAT+TGG | 0.319322 | 5_4:-17103997 | Msa0841130:CDS |
| AATTGTATCCATCAGGAATA+AGG | 0.321064 | 5_4:-17105224 | Msa0841130:intron |
| CTTCACGTTGCGGTAGTTGC+TGG | 0.322177 | 5_4:-17107211 | Msa0841130:CDS |
| CTAAGACTGAATATGAGATT+TGG | 0.338368 | 5_4:-17108361 | Msa0841130:CDS |
| AGGGTAATCCTGACCTCTTA+TGG | 0.352153 | 5_4:-17105032 | Msa0841130:CDS |
| CGAGGAAATTGTGAAGAAAT+TGG | 0.372095 | 5_4:-17107185 | Msa0841130:CDS |
| ATGCAAACTCGTTTATTAAG+AGG | 0.378242 | 5_4:-17107279 | Msa0841130:CDS |
| AACAGGGATTTCACCATCAT+TGG | 0.379563 | 5_4:+17107003 | None:intergenic |
| TGGTGAAAGCTGGGGAGAAA+TGG | 0.379583 | 5_4:-17104200 | Msa0841130:CDS |
| TGTTCTTCTTGCTGCTGCTA+AGG | 0.379583 | 5_4:-17106984 | Msa0841130:CDS |
| GATAAGTAATAAGTTTCAAT+TGG | 0.388393 | 5_4:+17103721 | None:intergenic |
| AGTTGCACCCAATTTATTCC+AGG | 0.399506 | 5_4:+17108244 | None:intergenic |
| CACAAGGAGCTGGTGAAAGC+TGG | 0.403742 | 5_4:-17104210 | Msa0841130:intron |
| GCTGCAGCTTTCACTGTCCC+TGG | 0.408383 | 5_4:-17104117 | Msa0841130:CDS |
| TTAGCAGCAGCAAGAAGAAC+AGG | 0.410668 | 5_4:+17106986 | None:intergenic |
| TAGAAACCACAGAGAAGAAA+AGG | 0.416389 | 5_4:+17103899 | None:intergenic |
| TTCCAAGTGGTAGTGGATAT+GGG | 0.416844 | 5_4:-17106650 | Msa0841130:CDS |
| AAATGCCGTGTAGACGCATT+TGG | 0.419337 | 5_4:-17104898 | Msa0841130:CDS |
| AATTCCATGTTGCACTTGGC+AGG | 0.419647 | 5_4:-17104874 | Msa0841130:CDS |
| ATCAGAACTTAGAGAGGCTT+CGG | 0.421195 | 5_4:-17105118 | Msa0841130:CDS |
| GGGTAATCCTGACCTCTTAT+GGG | 0.423361 | 5_4:-17105031 | Msa0841130:CDS |
| CTAATATGAGTAAGATTCTC+TGG | 0.424630 | 5_4:+17108290 | None:intergenic |
| TCACTTGCTATGCTCTTAAA+GGG | 0.427681 | 5_4:-17103856 | Msa0841130:CDS |
| CATTGGTCTTCATAGATAAC+AGG | 0.427879 | 5_4:+17107020 | None:intergenic |
| ACCTTAGTGGCAATGACTTA+AGG | 0.429666 | 5_4:+17103941 | None:intergenic |
| AGATGCAAAGAGAAATTCTA+TGG | 0.430747 | 5_4:-17104801 | Msa0841130:CDS |
| TTCACGTTGCGGTAGTTGCT+GGG | 0.432176 | 5_4:-17107210 | Msa0841130:CDS |
| TCTCTTTGCATCTGCATAGC+AGG | 0.438079 | 5_4:+17104811 | None:intergenic |
| GAGATTTGGAACAGGAAGAA+TGG | 0.441267 | 5_4:-17108347 | Msa0841130:CDS |
| CCACAAATCACACTTTGAAT+CGG | 0.443086 | 5_4:-17106718 | Msa0841130:CDS |
| TCTGTGTTTCCAAGTGGTAG+TGG | 0.443413 | 5_4:-17106657 | Msa0841130:CDS |
| CTGAATATGAGATTTGGAAC+AGG | 0.444534 | 5_4:-17108355 | Msa0841130:CDS |
| GTTCTTCTTGCTGCTGCTAA+GGG | 0.445513 | 5_4:-17106983 | Msa0841130:CDS |
| GACGGAACTAGAACGATAAC+AGG | 0.453839 | 5_4:+17103790 | None:intergenic |
| CGATTCAAAGTGTGATTTGT+GGG | 0.456154 | 5_4:+17106719 | None:intergenic |
| TATAGCGAAGTGTATGACTA+TGG | 0.458675 | 5_4:-17107071 | Msa0841130:CDS |
| TCCTTAAGTCATTGCCACTA+AGG | 0.460081 | 5_4:-17103942 | Msa0841130:CDS |
| TCTTGTGGGACATGGTCTGT+GGG | 0.464135 | 5_4:-17108420 | Msa0841130:CDS |
| TCAATGGCCCATAAGAGGTC+AGG | 0.465739 | 5_4:+17105024 | None:intergenic |
| TTTCAGCGTAACGAGCCGTT+AGG | 0.467061 | 5_4:+17103971 | None:intergenic |
| GTTTATAGATGCAATGAGAA+AGG | 0.467103 | 5_4:-17105052 | Msa0841130:CDS |
| TTGTGGGCAAGAGGCATTTG+AGG | 0.467341 | 5_4:+17106735 | None:intergenic |
| CTTGTTAGAAACTATCTTGT+GGG | 0.467922 | 5_4:-17108434 | None:intergenic |
| ATGCGTGCCAATGCGTATAA+TGG | 0.471182 | 5_4:+17106684 | None:intergenic |
| TGTGCAGCGATTTATATTGA+AGG | 0.474499 | 5_4:+17107329 | None:intergenic |
| TTCATATTGCTAAAGAAGCC+TGG | 0.477292 | 5_4:-17108262 | Msa0841130:CDS |
| AAAGAAGCCTGGAATAAATT+GGG | 0.481257 | 5_4:-17108251 | Msa0841130:CDS |
| ACAAGGAGCTGGTGAAAGCT+GGG | 0.481894 | 5_4:-17104209 | Msa0841130:intron |
| GGTGAAAGCTGGGGAGAAAT+GGG | 0.482292 | 5_4:-17104199 | Msa0841130:CDS |
| AGCTGGTTCATTTACTCTTG+TGG | 0.482801 | 5_4:-17104166 | Msa0841130:CDS |
| AGATTTGGAACAGGAAGAAT+GGG | 0.485550 | 5_4:-17108346 | Msa0841130:CDS |
| TCAGCTCAGCAACAAGAGCT+AGG | 0.486371 | 5_4:+17107107 | None:intergenic |
| CATAGCAAGTGAAGCACAGA+AGG | 0.486804 | 5_4:+17103867 | None:intergenic |
| ATCTTGTGGGACATGGTCTG+TGG | 0.486835 | 5_4:-17108421 | Msa0841130:CDS |
| GTGAAGAAATTGGTGAAGGA+AGG | 0.488215 | 5_4:-17107175 | Msa0841130:CDS |
| TTGCATCTGCATAGCAGGAC+CGG | 0.495069 | 5_4:+17104816 | None:intergenic |
| ATATATTCCACATCCTCTAT+GGG | 0.496055 | 5_4:-17107244 | Msa0841130:CDS |
| TTGTCTTGATTGTTTCCACC+AGG | 0.496117 | 5_4:+17104099 | None:intergenic |
| TTGTACACCGTTGGAAGACC+TGG | 0.502955 | 5_4:-17106930 | Msa0841130:CDS |
| TTTATAGATGCAATGAGAAA+GGG | 0.503030 | 5_4:-17105051 | Msa0841130:CDS |
| ATCATGTATGAGTTCGAAAA+CGG | 0.503307 | 5_4:+17104951 | None:intergenic |
| TGCGATAATTATCATCGGCC+AGG | 0.509460 | 5_4:+17106912 | None:intergenic |
| TGGCAATTCCATGTTGCACT+TGG | 0.511014 | 5_4:-17104878 | Msa0841130:CDS |
| TCTTTACCGTTGTACACCGT+TGG | 0.515694 | 5_4:-17106939 | Msa0841130:CDS |
| TCTGATCTTGATCGTAGATC+CGG | 0.515841 | 5_4:-17104835 | Msa0841130:CDS |
| CGCACCAATTTCAGGAATAG+AGG | 0.521001 | 5_4:+17108388 | None:intergenic |
| GCTCTTGTTGCTGAGCTGAC+CGG | 0.526277 | 5_4:-17107103 | Msa0841130:CDS |
| CCGATTCAAAGTGTGATTTG+TGG | 0.526820 | 5_4:+17106718 | None:intergenic |
| TGCAAACTCGTTTATTAAGA+GGG | 0.527286 | 5_4:-17107278 | Msa0841130:CDS |
| TGTGATGTCGTGCAAGAACA+AGG | 0.535047 | 5_4:+17104068 | None:intergenic |
| GAGGCATTTGAGGAAATCGT+TGG | 0.537554 | 5_4:+17106745 | None:intergenic |
| GGTCCTCCCCATAGAGGATG+TGG | 0.539677 | 5_4:+17107237 | None:intergenic |
| AAGAGAAATTCTATGGTTCA+AGG | 0.541072 | 5_4:-17104794 | Msa0841130:intron |
| TGTGCAACCATTATACGCAT+TGG | 0.543058 | 5_4:-17106691 | Msa0841130:CDS |
| AGTGCGAAAAGTAACCTTAG+TGG | 0.548121 | 5_4:+17103928 | None:intergenic |
| ATGTTGCAAGCAGCAAAGCA+TGG | 0.548691 | 5_4:-17105084 | Msa0841130:CDS |
| AACCCATATCCACTACCACT+TGG | 0.557493 | 5_4:+17106648 | None:intergenic |
| AAGTGTGATTTGTGGGCAAG+AGG | 0.558162 | 5_4:+17106726 | None:intergenic |
| TCTTGTTAGAAACTATCTTG+TGG | 0.559427 | 5_4:-17108435 | None:intergenic |
| AGAAACTATCTTGTGGGACA+TGG | 0.562860 | 5_4:-17108428 | Msa0841130:CDS |
| AGAAACCACAGAGAAGAAAA+GGG | 0.563826 | 5_4:+17103900 | None:intergenic |
| TGTTGCAAGCAGCAAAGCAT+GGG | 0.564523 | 5_4:-17105083 | Msa0841130:CDS |
| GCTTTAATTTGCAGGTGTGG+TGG | 0.564757 | 5_4:-17107362 | Msa0841130:intron |
| ACTTGAAAATCTCAAGGAAG+AGG | 0.567742 | 5_4:+17103758 | None:intergenic |
| TAAGGAATCAGAACTTAGAG+AGG | 0.568613 | 5_4:-17105124 | Msa0841130:CDS |
| GCCGATGATAATTATCGCAA+TGG | 0.574637 | 5_4:-17106908 | Msa0841130:intron |
| TGAAGAAATTGGTGAAGGAA+GGG | 0.574748 | 5_4:-17107174 | Msa0841130:CDS |
| CAGCTCAGCAACAAGAGCTA+GGG | 0.580236 | 5_4:+17107108 | None:intergenic |
| AAATGGGCAAAAGATACAGC+TGG | 0.580445 | 5_4:-17104183 | Msa0841130:CDS |
| TTATCTATGAAGACCAATGA+TGG | 0.582929 | 5_4:-17107016 | Msa0841130:CDS |
| ACCTTGCTCAATATCTGGAT+CGG | 0.583770 | 5_4:+17108202 | None:intergenic |
| TAAGAAAATATCACGGTCAG+AGG | 0.584733 | 5_4:-17107044 | Msa0841130:CDS |
| TGCGGTAGTTGCTGGGCACG+AGG | 0.589759 | 5_4:-17107203 | Msa0841130:CDS |
| TCTCTTCATTGGAATCCTAA+CGG | 0.591072 | 5_4:-17103986 | Msa0841130:CDS |
| CTGTAGACTTGAAAATCTCA+AGG | 0.594097 | 5_4:+17103752 | None:intergenic |
| GCAGCTTTCACTGTCCCTGG+TGG | 0.601445 | 5_4:-17104114 | Msa0841130:CDS |
| AGGAAGAGGCGCAATTGTGA+CGG | 0.607133 | 5_4:+17103772 | None:intergenic |
| AGTATATTGAGAGCGGTGAG+TGG | 0.609550 | 5_4:-17107306 | Msa0841130:CDS |
| ACCATTGCGATAATTATCAT+CGG | 0.609954 | 5_4:+17106907 | None:intergenic |
| TAGAACGATAACAGGAACAC+TGG | 0.611619 | 5_4:+17103798 | None:intergenic |
| AACTACCGCAACGTGAAGAA+CGG | 0.612033 | 5_4:+17107216 | None:intergenic |
| AATTGCCAAATGCGTCTACA+CGG | 0.612652 | 5_4:+17104893 | None:intergenic |
| TTAGGATTCCAATGAAGAGA+AGG | 0.614556 | 5_4:+17103989 | None:intergenic |
| ATGCCTTCTGTGTTTCCAAG+TGG | 0.615562 | 5_4:-17106663 | Msa0841130:CDS |
| TGCAACTGTAAATGGACGGA+AGG | 0.618113 | 5_4:-17104929 | Msa0841130:CDS |
| CTTGTGGGACATGGTCTGTG+GGG | 0.619674 | 5_4:-17108419 | Msa0841130:CDS |
| CTACCACTTGGAAACACAGA+AGG | 0.622603 | 5_4:+17106660 | None:intergenic |
| AAGAACGGTCCTCCCCATAG+AGG | 0.622685 | 5_4:+17107231 | None:intergenic |
| GCCGATCCAGATATTGAGCA+AGG | 0.624425 | 5_4:-17108203 | Msa0841130:intron |
| AATTGTGAAGAAATTGGTGA+AGG | 0.625256 | 5_4:-17107179 | Msa0841130:CDS |
| ATATCCTGCCAAGTGCAACA+TGG | 0.627952 | 5_4:+17104870 | None:intergenic |
| GGTGGAAACAATCAAGACAA+TGG | 0.629811 | 5_4:-17104096 | Msa0841130:CDS |
| ATGATGCAACTGTAAATGGA+CGG | 0.638038 | 5_4:-17104933 | Msa0841130:CDS |
| CATATCATTCAACTAACATG+TGG | 0.643061 | 5_4:-17108314 | Msa0841130:CDS |
| CAAGGAGCTGGTGAAAGCTG+GGG | 0.651622 | 5_4:-17104208 | Msa0841130:intron |
| TGTCTTGATTGTTTCCACCA+GGG | 0.652150 | 5_4:+17104100 | None:intergenic |
| GAGGACCGTTCTTCACGTTG+CGG | 0.655029 | 5_4:-17107221 | Msa0841130:CDS |
| GTGATGTCGTGCAAGAACAA+GGG | 0.659099 | 5_4:+17104069 | None:intergenic |
| ATTCCACATCCTCTATGGGG+AGG | 0.660094 | 5_4:-17107240 | Msa0841130:CDS |
| TAGCAGCAGCAAGAAGAACA+GGG | 0.665135 | 5_4:+17106987 | None:intergenic |
| TTGGAACAGGAAGAATGGGA+AGG | 0.668429 | 5_4:-17108342 | Msa0841130:CDS |
| TATTTCAAGAGCTACACGGT+AGG | 0.669157 | 5_4:+17105179 | None:intergenic |
| GTGAAAATGAAAGACAATCG+AGG | 0.669964 | 5_4:-17107139 | Msa0841130:intron |
| TCATCGGCCAGGTCTTCCAA+CGG | 0.671668 | 5_4:+17106923 | None:intergenic |
| TGGTATATAAGAAAATATCA+CGG | 0.677081 | 5_4:-17107051 | Msa0841130:CDS |
| CTACGATCAAGATCAGAGGA+AGG | 0.678354 | 5_4:+17104841 | None:intergenic |
| CTGCACAAGTATATTGAGAG+CGG | 0.680709 | 5_4:-17107313 | Msa0841130:CDS |
| GGATCTACGATCAAGATCAG+AGG | 0.680818 | 5_4:+17104837 | None:intergenic |
| TCAATATTTCAAGAGCTACA+CGG | 0.684421 | 5_4:+17105175 | None:intergenic |
| GGTCTTCCAACGGTGTACAA+CGG | 0.687225 | 5_4:+17106933 | None:intergenic |
| TATATTCCACATCCTCTATG+GGG | 0.688060 | 5_4:-17107243 | Msa0841130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTTAAATACTTATAATATT+AGG | - | chr5_4:17104661-17104680 | Msa0841130:intron | 10.0% |
| !! | CTTAAATACTTATAATATTA+GGG | - | chr5_4:17104662-17104681 | Msa0841130:intron | 10.0% |
| !! | ACTTTATAAAAGAAATTTAA+AGG | - | chr5_4:17105713-17105732 | Msa0841130:intron | 10.0% |
| !! | TTATTAAACAGTAAAAGTTT+AGG | - | chr5_4:17104505-17104524 | Msa0841130:intron | 15.0% |
| !!! | ATTCAAATGTACTTATTTTT+GGG | + | chr5_4:17104598-17104617 | None:intergenic | 15.0% |
| !!! | TATTCAAATGTACTTATTTT+TGG | + | chr5_4:17104599-17104618 | None:intergenic | 15.0% |
| !! | ATTTAAAGGTGATTTATAAA+AGG | - | chr5_4:17105727-17105746 | Msa0841130:intron | 15.0% |
| !! | TTTAAAGGTGATTTATAAAA+GGG | - | chr5_4:17105728-17105747 | Msa0841130:intron | 15.0% |
| !!! | CAAAAGTTTGTATTTTATAA+AGG | + | chr5_4:17105770-17105789 | None:intergenic | 15.0% |
| !! | TACTTCCAATAATATATTAA+AGG | - | chr5_4:17105846-17105865 | Msa0841130:intron | 15.0% |
| !! | AAACTCCTTTAATATATTAT+TGG | + | chr5_4:17105854-17105873 | None:intergenic | 15.0% |
| !! | TAATTAATTAATCACAAAGA+GGG | + | chr5_4:17106846-17106865 | None:intergenic | 15.0% |
| !! | TTAATTAATTAATCACAAAG+AGG | + | chr5_4:17106847-17106866 | None:intergenic | 15.0% |
| !!! | AAAAACTAAATTTGAAATTC+TGG | - | chr5_4:17107604-17107623 | Msa0841130:intron | 15.0% |
| !! | TACACATTAATCTATTCTTT+GGG | - | chr5_4:17103947-17103966 | Msa0841130:CDS | 20.0% |
| !! | AACTATGTCTAATATGTATA+GGG | + | chr5_4:17103989-17104008 | None:intergenic | 20.0% |
| !! | AAACTATGTCTAATATGTAT+AGG | + | chr5_4:17103990-17104009 | None:intergenic | 20.0% |
| !!! | AATTCATATGTTTGATTTCA+TGG | - | chr5_4:17104176-17104195 | Msa0841130:CDS | 20.0% |
| !!! | ATTCATATGTTTGATTTCAT+GGG | - | chr5_4:17104177-17104196 | Msa0841130:CDS | 20.0% |
| !!! | ACACTTTATTTATTATGAAG+TGG | + | chr5_4:17104247-17104266 | None:intergenic | 20.0% |
| !!! | TTTGAATATTGTGATTTTAG+TGG | - | chr5_4:17104611-17104630 | Msa0841130:intron | 20.0% |
| !!! | TTGAATATTGTGATTTTAGT+GGG | - | chr5_4:17104612-17104631 | Msa0841130:intron | 20.0% |
| !!! | CATTTATTTTCCTTACTAAT+TGG | + | chr5_4:17104689-17104708 | None:intergenic | 20.0% |
| !! | CAATTAGTAAGGAAAATAAA+TGG | - | chr5_4:17104687-17104706 | Msa0841130:intron | 20.0% |
| !! | TGGTATATAAGAAAATATCA+CGG | - | chr5_4:17105058-17105077 | Msa0841130:CDS | 20.0% |
| !!! | TTTTACGCATATTTTTTTTC+AGG | - | chr5_4:17106678-17106697 | Msa0841130:CDS | 20.0% |
| !!! | TTGTTAATCCTTGTTTAAAT+CGG | - | chr5_4:17106768-17106787 | Msa0841130:intron | 20.0% |
| !! | AATTAATTAATCACAAAGAG+GGG | + | chr5_4:17106845-17106864 | None:intergenic | 20.0% |
| !!! | TCAAATTTAGTTTTTGAAGT+TGG | + | chr5_4:17107599-17107618 | None:intergenic | 20.0% |
| !! | ATACATGACATTTAAATAAG+TGG | - | chr5_4:17107667-17107686 | Msa0841130:intron | 20.0% |
| !! | ATGAATAAGATAATAATGTG+TGG | + | chr5_4:17107725-17107744 | None:intergenic | 20.0% |
| !! | GATAAGTAATAAGTTTCAAT+TGG | + | chr5_4:17108391-17108410 | None:intergenic | 20.0% |
| ! | GTACACATTAATCTATTCTT+TGG | - | chr5_4:17103946-17103965 | Msa0841130:CDS | 25.0% |
| ! | TAGTTTCTAAATGTAGTGAA+AGG | - | chr5_4:17104004-17104023 | Msa0841130:CDS | 25.0% |
| !! | CAATGAGGAAAGATTTTTAA+AGG | - | chr5_4:17104400-17104419 | Msa0841130:intron | 25.0% |
| ! | AGCTAATGTTTATTAGCAAT+AGG | - | chr5_4:17104427-17104446 | Msa0841130:intron | 25.0% |
| ! | ATGTTTATTAGCAATAGGTA+AGG | - | chr5_4:17104432-17104451 | Msa0841130:intron | 25.0% |
| ! | TGTTTATTAGCAATAGGTAA+GGG | - | chr5_4:17104433-17104452 | Msa0841130:intron | 25.0% |
| ! | TCGATTCAATATTGTATCTT+AGG | - | chr5_4:17105323-17105342 | Msa0841130:intron | 25.0% |
| ! | AATTTGAAAAGTAAGCGAAA+TGG | + | chr5_4:17105544-17105563 | None:intergenic | 25.0% |
| !!! | ATTTCGCTTACTTTTCAAAT+TGG | - | chr5_4:17105543-17105562 | Msa0841130:intron | 25.0% |
| !!! | TTTCGCTTACTTTTCAAATT+GGG | - | chr5_4:17105544-17105563 | Msa0841130:intron | 25.0% |
| ! | TGCAAACTTATAATGTTACA+CGG | - | chr5_4:17105603-17105622 | Msa0841130:intron | 25.0% |
| !! | TTGTATTTTATAAAGGACAC+TGG | + | chr5_4:17105763-17105782 | None:intergenic | 25.0% |
| ! | AATGAATACTATATGTGTAG+TGG | + | chr5_4:17105816-17105835 | None:intergenic | 25.0% |
| ! | GAGTAAATAATGAATGAGAT+TGG | - | chr5_4:17106078-17106097 | Msa0841130:intron | 25.0% |
| ! | ATGAACACACATATATAACA+GGG | + | chr5_4:17106646-17106665 | None:intergenic | 25.0% |
| ! | TATGAACACACATATATAAC+AGG | + | chr5_4:17106647-17106666 | None:intergenic | 25.0% |
| !!! | CTAATATACCGATTTAAACA+AGG | + | chr5_4:17106779-17106798 | None:intergenic | 25.0% |
| ! | GAATGATTGTACTTACAATA+AGG | + | chr5_4:17106820-17106839 | None:intergenic | 25.0% |
| !! | TATATTTTCCTTATTCCTGA+TGG | + | chr5_4:17106896-17106915 | None:intergenic | 25.0% |
| ! | TTTATAGATGCAATGAGAAA+GGG | - | chr5_4:17107058-17107077 | Msa0841130:CDS | 25.0% |
| ! | GCCATTGATAAAAATAAAAG+AGG | - | chr5_4:17107100-17107119 | Msa0841130:CDS | 25.0% |
| !!! | GCCTCTTTTATTTTTATCAA+TGG | + | chr5_4:17107104-17107123 | None:intergenic | 25.0% |
| ! | AATGTCATGTATCTCAAAAT+TGG | + | chr5_4:17107659-17107678 | None:intergenic | 25.0% |
| !! | CATATTGTGAAATTTTGTGA+AGG | - | chr5_4:17107793-17107812 | Msa0841130:intron | 25.0% |
| CTAAGACTGAATATGAGATT+TGG | - | chr5_4:17103748-17103767 | Msa0841130:CDS | 30.0% | |
| CATATCATTCAACTAACATG+TGG | - | chr5_4:17103795-17103814 | Msa0841130:CDS | 30.0% | |
| CTAATATGAGTAAGATTCTC+TGG | + | chr5_4:17103822-17103841 | None:intergenic | 30.0% | |
| TAAAGAAGCCTGGAATAAAT+TGG | - | chr5_4:17103857-17103876 | Msa0841130:CDS | 30.0% | |
| AAAGAAGCCTGGAATAAATT+GGG | - | chr5_4:17103858-17103877 | Msa0841130:CDS | 30.0% | |
| ATAAATAAAGTGTGTGAGTG+AGG | - | chr5_4:17104254-17104273 | Msa0841130:intron | 30.0% | |
| GTTGTATGAGATGTTACAAA+TGG | - | chr5_4:17104335-17104354 | Msa0841130:intron | 30.0% | |
| ! | TGAGATGTTACAAATGGTTT+TGG | - | chr5_4:17104341-17104360 | Msa0841130:intron | 30.0% |
| !! | TGAGGAAAGATTTTTAAAGG+AGG | - | chr5_4:17104403-17104422 | Msa0841130:intron | 30.0% |
| TAGTTACAACGCTTAAGATT+GGG | + | chr5_4:17104533-17104552 | None:intergenic | 30.0% | |
| TTAGTTACAACGCTTAAGAT+TGG | + | chr5_4:17104534-17104553 | None:intergenic | 30.0% | |
| TTGTAACTAAGAACAACCAA+CGG | - | chr5_4:17104544-17104563 | Msa0841130:intron | 30.0% | |
| ATATTAGGGTCCAATTAGTA+AGG | - | chr5_4:17104676-17104695 | Msa0841130:intron | 30.0% | |
| !! | ACATACATGCTTTAATTTGC+AGG | - | chr5_4:17104739-17104758 | Msa0841130:intron | 30.0% |
| ATGCAAACTCGTTTATTAAG+AGG | - | chr5_4:17104830-17104849 | Msa0841130:CDS | 30.0% | |
| TGCAAACTCGTTTATTAAGA+GGG | - | chr5_4:17104831-17104850 | Msa0841130:CDS | 30.0% | |
| AATATATTCCACATCCTCTA+TGG | - | chr5_4:17104864-17104883 | Msa0841130:CDS | 30.0% | |
| ATATATTCCACATCCTCTAT+GGG | - | chr5_4:17104865-17104884 | Msa0841130:CDS | 30.0% | |
| AATTGTGAAGAAATTGGTGA+AGG | - | chr5_4:17104930-17104949 | Msa0841130:CDS | 30.0% | |
| TTATCTATGAAGACCAATGA+TGG | - | chr5_4:17105093-17105112 | Msa0841130:CDS | 30.0% | |
| ACCATTGCGATAATTATCAT+CGG | + | chr5_4:17105205-17105224 | None:intergenic | 30.0% | |
| TGTATCACTGCAGAAATATT+TGG | - | chr5_4:17105243-17105262 | Msa0841130:intron | 30.0% | |
| ATCGACATCAAACACTAATA+TGG | + | chr5_4:17105308-17105327 | None:intergenic | 30.0% | |
| TCAATATTGTATCTTAGGTG+TGG | - | chr5_4:17105328-17105347 | Msa0841130:intron | 30.0% | |
| TTGGGTCATCTTAAAATTCT+CGG | - | chr5_4:17105562-17105581 | Msa0841130:intron | 30.0% | |
| GGAGATGTTAAATTAAGTGT+TGG | + | chr5_4:17105795-17105814 | None:intergenic | 30.0% | |
| ! | AGAGTTTTACATGATCTGTT+TGG | - | chr5_4:17105887-17105906 | Msa0841130:intron | 30.0% |
| TACATGATCTGTTTGGAAAT+TGG | - | chr5_4:17105894-17105913 | Msa0841130:intron | 30.0% | |
| ! | AGTGAAGTTTGATGAGTTTT+TGG | + | chr5_4:17105967-17105986 | None:intergenic | 30.0% |
| AGACCAACTTTACAAAATTG+AGG | - | chr5_4:17106010-17106029 | Msa0841130:intron | 30.0% | |
| ! | ACTCCTCAATTTTGTAAAGT+TGG | + | chr5_4:17106016-17106035 | None:intergenic | 30.0% |
| !! | GAGTATCGTTCCAATTTTAT+CGG | - | chr5_4:17106032-17106051 | Msa0841130:intron | 30.0% |
| GGTAATCTCAAAACTAAAAG+CGG | + | chr5_4:17106187-17106206 | None:intergenic | 30.0% | |
| !! | AGAGAAGTGCATGAATTTTA+CGG | - | chr5_4:17106211-17106230 | Msa0841130:intron | 30.0% |
| !!! | TTTGTGTTGTTTTTCCTCTT+TGG | + | chr5_4:17106263-17106282 | None:intergenic | 30.0% |
| !! | AAGCTCTAGAAAGAAGAATT+AGG | + | chr5_4:17106316-17106335 | None:intergenic | 30.0% |
| ! | GTTTTTCTACAATATGCGAA+TGG | - | chr5_4:17106355-17106374 | Msa0841130:intron | 30.0% |
| CTGAGGATTATTAATCTTCT+CGG | - | chr5_4:17106383-17106402 | Msa0841130:intron | 30.0% | |
| ! | TCACATGTCATTTCAGAATT+CGG | - | chr5_4:17106719-17106738 | Msa0841130:CDS | 30.0% |
| ! | TTATTCCTGATGGATACAAT+TGG | + | chr5_4:17106886-17106905 | None:intergenic | 30.0% |
| AATTGTATCCATCAGGAATA+AGG | - | chr5_4:17106885-17106904 | Msa0841130:intron | 30.0% | |
| TCAATATTTCAAGAGCTACA+CGG | + | chr5_4:17106937-17106956 | None:intergenic | 30.0% | |
| CCTTAAACTCTTGAATTCTT+TGG | + | chr5_4:17106970-17106989 | None:intergenic | 30.0% | |
| CCAAAGAATTCAAGAGTTTA+AGG | - | chr5_4:17106967-17106986 | Msa0841130:CDS | 30.0% | |
| GTTTATAGATGCAATGAGAA+AGG | - | chr5_4:17107057-17107076 | Msa0841130:CDS | 30.0% | |
| ATCATGTATGAGTTCGAAAA+CGG | + | chr5_4:17107161-17107180 | None:intergenic | 30.0% | |
| ATACATGATGCAACTGTAAA+TGG | - | chr5_4:17107172-17107191 | Msa0841130:CDS | 30.0% | |
| AGATGCAAAGAGAAATTCTA+TGG | - | chr5_4:17107308-17107327 | Msa0841130:CDS | 30.0% | |
| AAGAGAAATTCTATGGTTCA+AGG | - | chr5_4:17107315-17107334 | Msa0841130:CDS | 30.0% | |
| TTTCACAATATGTTATAGCG+CGG | + | chr5_4:17107785-17107804 | None:intergenic | 30.0% | |
| !!! | TTTTTTGCTTCCTTACACTT+GGG | + | chr5_4:17107839-17107858 | None:intergenic | 30.0% |
| !!! | ATTTTTTGCTTCCTTACACT+TGG | + | chr5_4:17107840-17107859 | None:intergenic | 30.0% |
| ! | TCTTTTCACTTCTTCAACTT+CGG | - | chr5_4:17108096-17108115 | Msa0841130:intron | 30.0% |
| ! | CTGAATATGAGATTTGGAAC+AGG | - | chr5_4:17103754-17103773 | Msa0841130:CDS | 35.0% |
| ! | AGATTTGGAACAGGAAGAAT+GGG | - | chr5_4:17103763-17103782 | Msa0841130:CDS | 35.0% |
| TTCATATTGCTAAAGAAGCC+TGG | - | chr5_4:17103847-17103866 | Msa0841130:CDS | 35.0% | |
| TACATACCTTGCTCAATATC+TGG | + | chr5_4:17103915-17103934 | None:intergenic | 35.0% | |
| ! | TAAGTGTCTTTTGTGAGTCA+TGG | - | chr5_4:17104040-17104059 | Msa0841130:CDS | 35.0% |
| ATTAAGTCCTGTCTCATAGT+CGG | + | chr5_4:17104072-17104091 | None:intergenic | 35.0% | |
| !! | AAAAGAATTGTGTTGACTCG+TGG | - | chr5_4:17104290-17104309 | Msa0841130:intron | 35.0% |
| !! | AAAGAATTGTGTTGACTCGT+GGG | - | chr5_4:17104291-17104310 | Msa0841130:intron | 35.0% |
| AGTTACAACGCTTAAGATTG+GGG | + | chr5_4:17104532-17104551 | None:intergenic | 35.0% | |
| TGTGCAGCGATTTATATTGA+AGG | + | chr5_4:17104783-17104802 | None:intergenic | 35.0% | |
| TATATTCCACATCCTCTATG+GGG | - | chr5_4:17104866-17104885 | Msa0841130:CDS | 35.0% | |
| CGAGGAAATTGTGAAGAAAT+TGG | - | chr5_4:17104924-17104943 | Msa0841130:CDS | 35.0% | |
| TGAAGAAATTGGTGAAGGAA+GGG | - | chr5_4:17104935-17104954 | Msa0841130:CDS | 35.0% | |
| GTGAAAATGAAAGACAATCG+AGG | - | chr5_4:17104970-17104989 | Msa0841130:intron | 35.0% | |
| TATAGCGAAGTGTATGACTA+TGG | - | chr5_4:17105038-17105057 | Msa0841130:CDS | 35.0% | |
| TAAGAAAATATCACGGTCAG+AGG | - | chr5_4:17105065-17105084 | Msa0841130:CDS | 35.0% | |
| !! | CATTGGTCTTCATAGATAAC+AGG | + | chr5_4:17105092-17105111 | None:intergenic | 35.0% |
| ! | CGATTCAAAGTGTGATTTGT+GGG | + | chr5_4:17105393-17105412 | None:intergenic | 35.0% |
| CCACAAATCACACTTTGAAT+CGG | - | chr5_4:17105391-17105410 | Msa0841130:intron | 35.0% | |
| AATTCATGCACTTCTCTTTC+AGG | + | chr5_4:17106208-17106227 | None:intergenic | 35.0% | |
| !! | GAGAAGTGCATGAATTTTAC+GGG | - | chr5_4:17106212-17106231 | Msa0841130:intron | 35.0% |
| TCTTGCAAATATTGCCAAAG+AGG | - | chr5_4:17106246-17106265 | Msa0841130:intron | 35.0% | |
| !! | ATCTTCTCGGTTGTTTCTTT+AGG | - | chr5_4:17106396-17106415 | Msa0841130:intron | 35.0% |
| ! | GTTTCTTTAGGAAGGTTATG+TGG | - | chr5_4:17106408-17106427 | Msa0841130:intron | 35.0% |
| AAGATCACAGATCACAACAA+GGG | + | chr5_4:17106548-17106567 | None:intergenic | 35.0% | |
| AAAGATCACAGATCACAACA+AGG | + | chr5_4:17106549-17106568 | None:intergenic | 35.0% | |
| TCGGTACTATTAAAGTTCTC+TGG | - | chr5_4:17106738-17106757 | Msa0841130:CDS | 35.0% | |
| TAATTAATCACAAAGAGGGG+AGG | + | chr5_4:17106842-17106861 | None:intergenic | 35.0% | |
| TAAGGAATCAGAACTTAGAG+AGG | - | chr5_4:17106985-17107004 | Msa0841130:CDS | 35.0% | |
| ! | TTTTATCAATGGCCCATAAG+AGG | + | chr5_4:17107093-17107112 | None:intergenic | 35.0% |
| ATGATGCAACTGTAAATGGA+CGG | - | chr5_4:17107176-17107195 | Msa0841130:CDS | 35.0% | |
| GCTTATATGTTGGAACAAAG+AGG | - | chr5_4:17107394-17107413 | Msa0841130:intron | 35.0% | |
| GAGAAGAGATTAGAGAGTTT+AGG | - | chr5_4:17107455-17107474 | Msa0841130:intron | 35.0% | |
| GTTGGTTGTGAAGTTGTTAT+AGG | + | chr5_4:17107581-17107600 | None:intergenic | 35.0% | |
| TATAGCGCGGTTAAAATTCA+TGG | + | chr5_4:17107772-17107791 | None:intergenic | 35.0% | |
| ! | TTTTTGCTTCCTTACACTTG+GGG | + | chr5_4:17107838-17107857 | None:intergenic | 35.0% |
| TTAGGATTCCAATGAAGAGA+AGG | + | chr5_4:17108123-17108142 | None:intergenic | 35.0% | |
| TCTCTTCATTGGAATCCTAA+CGG | - | chr5_4:17108123-17108142 | Msa0841130:intron | 35.0% | |
| AGAAACCACAGAGAAGAAAA+GGG | + | chr5_4:17108212-17108231 | None:intergenic | 35.0% | |
| TAGAAACCACAGAGAAGAAA+AGG | + | chr5_4:17108213-17108232 | None:intergenic | 35.0% | |
| !! | TTCACTTGCTATGCTCTTAA+AGG | - | chr5_4:17108252-17108271 | Msa0841130:CDS | 35.0% |
| !! | TCACTTGCTATGCTCTTAAA+GGG | - | chr5_4:17108253-17108272 | Msa0841130:CDS | 35.0% |
| ACTTGAAAATCTCAAGGAAG+AGG | + | chr5_4:17108354-17108373 | None:intergenic | 35.0% | |
| CTGTAGACTTGAAAATCTCA+AGG | + | chr5_4:17108360-17108379 | None:intergenic | 35.0% | |
| GTGACCTCTATTCCTGAAAT+TGG | - | chr5_4:17103717-17103736 | Msa0841130:CDS | 40.0% | |
| ! | GAGATTTGGAACAGGAAGAA+TGG | - | chr5_4:17103762-17103781 | Msa0841130:CDS | 40.0% |
| AGTTGCACCCAATTTATTCC+AGG | + | chr5_4:17103868-17103887 | None:intergenic | 40.0% | |
| ACCTTGCTCAATATCTGGAT+CGG | + | chr5_4:17103910-17103929 | None:intergenic | 40.0% | |
| !! | AAGAATTGTGTTGACTCGTG+GGG | - | chr5_4:17104292-17104311 | Msa0841130:intron | 40.0% |
| TAGGTAAGGGAGAAGCAATA+AGG | - | chr5_4:17104446-17104465 | Msa0841130:intron | 40.0% | |
| AAGAACAACCAACGGCATTT+AGG | - | chr5_4:17104552-17104571 | Msa0841130:intron | 40.0% | |
| !! | CATGCTTTAATTTGCAGGTG+TGG | - | chr5_4:17104744-17104763 | Msa0841130:intron | 40.0% |
| CTGCACAAGTATATTGAGAG+CGG | - | chr5_4:17104796-17104815 | Msa0841130:CDS | 40.0% | |
| GTGAAGAAATTGGTGAAGGA+AGG | - | chr5_4:17104934-17104953 | Msa0841130:CDS | 40.0% | |
| CTTCGCTATATTCGTGTTTC+CGG | + | chr5_4:17105028-17105047 | None:intergenic | 40.0% | |
| AACAGGGATTTCACCATCAT+TGG | + | chr5_4:17105109-17105128 | None:intergenic | 40.0% | |
| GCCGATGATAATTATCGCAA+TGG | - | chr5_4:17105201-17105220 | Msa0841130:CDS | 40.0% | |
| ! | CTGCAGAAATATTTGGTTCG+TGG | - | chr5_4:17105250-17105269 | Msa0841130:intron | 40.0% |
| CCGATTCAAAGTGTGATTTG+TGG | + | chr5_4:17105394-17105413 | None:intergenic | 40.0% | |
| TGTGCAACCATTATACGCAT+TGG | - | chr5_4:17105418-17105437 | Msa0841130:intron | 40.0% | |
| !! | TTTCCAAGTGGTAGTGGATA+TGG | - | chr5_4:17105458-17105477 | Msa0841130:intron | 40.0% |
| !! | TTCCAAGTGGTAGTGGATAT+GGG | - | chr5_4:17105459-17105478 | Msa0841130:intron | 40.0% |
| TTCTCGGTAGTGAAATAGCT+AGG | - | chr5_4:17105578-17105597 | Msa0841130:intron | 40.0% | |
| TTACTCCTCAATTGTCCCTT+CGG | + | chr5_4:17106064-17106083 | None:intergenic | 40.0% | |
| !! | AAGCGGAAGTAGATTAGTCT+TGG | + | chr5_4:17106170-17106189 | None:intergenic | 40.0% |
| CAACACAAAGCTTCTTTCGT+AGG | - | chr5_4:17106274-17106293 | Msa0841130:intron | 40.0% | |
| CAAAGCTTCTTTCGTAGGTA+TGG | - | chr5_4:17106279-17106298 | Msa0841130:intron | 40.0% | |
| !! | TCTCGGTTGTTTCTTTAGGA+AGG | - | chr5_4:17106400-17106419 | Msa0841130:intron | 40.0% |
| ! | CTTTAGGAAGGTTATGTGGA+CGG | - | chr5_4:17106412-17106431 | Msa0841130:intron | 40.0% |
| TTTATCGCCAGTAAAGCAGT+TGG | - | chr5_4:17106443-17106462 | Msa0841130:intron | 40.0% | |
| TTATCGCCAGTAAAGCAGTT+GGG | - | chr5_4:17106444-17106463 | Msa0841130:intron | 40.0% | |
| AACTTACCCAACTGCTTTAC+TGG | + | chr5_4:17106453-17106472 | None:intergenic | 40.0% | |
| TCTGGATTACAAGACGTATC+CGG | + | chr5_4:17106596-17106615 | None:intergenic | 40.0% | |
| TCTTGTAATCCAGACCCTAA+GGG | - | chr5_4:17106602-17106621 | Msa0841130:intron | 40.0% | |
| GCTTTGTATTCACACCCTTA+GGG | + | chr5_4:17106619-17106638 | None:intergenic | 40.0% | |
| CACACATATATAACAGGGAC+TGG | + | chr5_4:17106641-17106660 | None:intergenic | 40.0% | |
| ! | TCCTGATGGATACAATTGGA+GGG | + | chr5_4:17106882-17106901 | None:intergenic | 40.0% |
| ! | TTCCTGATGGATACAATTGG+AGG | + | chr5_4:17106883-17106902 | None:intergenic | 40.0% |
| TATTTCAAGAGCTACACGGT+AGG | + | chr5_4:17106933-17106952 | None:intergenic | 40.0% | |
| ATCAGAACTTAGAGAGGCTT+CGG | - | chr5_4:17106991-17107010 | Msa0841130:CDS | 40.0% | |
| ! | GTTCGAAAACGGCTTTTCTA+CGG | + | chr5_4:17107150-17107169 | None:intergenic | 40.0% |
| AATTGCCAAATGCGTCTACA+CGG | + | chr5_4:17107219-17107238 | None:intergenic | 40.0% | |
| TTGCACTTGGCAGGATATTT+AGG | - | chr5_4:17107244-17107263 | Msa0841130:CDS | 40.0% | |
| TGCACTTGGCAGGATATTTA+GGG | - | chr5_4:17107245-17107264 | Msa0841130:CDS | 40.0% | |
| TCTGATCTTGATCGTAGATC+CGG | - | chr5_4:17107274-17107293 | Msa0841130:CDS | 40.0% | |
| ! | GTGAAATTTTGTGAAGGCAG+TGG | - | chr5_4:17107799-17107818 | Msa0841130:intron | 40.0% |
| ! | AAATTTTGTGAAGGCAGTGG+AGG | - | chr5_4:17107802-17107821 | Msa0841130:intron | 40.0% |
| CTTTCTGTAAATAGCTCACG+AGG | + | chr5_4:17107878-17107897 | None:intergenic | 40.0% | |
| GCTATTTACAGAAAGCCACA+AGG | - | chr5_4:17107883-17107902 | Msa0841130:intron | 40.0% | |
| AAATGGGCAAAAGATACAGC+TGG | - | chr5_4:17107926-17107945 | Msa0841130:intron | 40.0% | |
| ! | AGCTGGTTCATTTACTCTTG+TGG | - | chr5_4:17107943-17107962 | Msa0841130:intron | 40.0% |
| TGTCTTGATTGTTTCCACCA+GGG | + | chr5_4:17108012-17108031 | None:intergenic | 40.0% | |
| TTGTCTTGATTGTTTCCACC+AGG | + | chr5_4:17108013-17108032 | None:intergenic | 40.0% | |
| GGTGGAAACAATCAAGACAA+TGG | - | chr5_4:17108013-17108032 | Msa0841130:intron | 40.0% | |
| TCCTTAAGTCATTGCCACTA+AGG | - | chr5_4:17108167-17108186 | Msa0841130:intron | 40.0% | |
| ACCTTAGTGGCAATGACTTA+AGG | + | chr5_4:17108171-17108190 | None:intergenic | 40.0% | |
| AGTGCGAAAAGTAACCTTAG+TGG | + | chr5_4:17108184-17108203 | None:intergenic | 40.0% | |
| TAGAACGATAACAGGAACAC+TGG | + | chr5_4:17108314-17108333 | None:intergenic | 40.0% | |
| CGCACCAATTTCAGGAATAG+AGG | + | chr5_4:17103724-17103743 | None:intergenic | 45.0% | |
| TTAGAACGCGCACCAATTTC+AGG | + | chr5_4:17103732-17103751 | None:intergenic | 45.0% | |
| TTGGAACAGGAAGAATGGGA+AGG | - | chr5_4:17103767-17103786 | Msa0841130:CDS | 45.0% | |
| GACTAAACCGACTATGAGAC+AGG | - | chr5_4:17104062-17104081 | Msa0841130:CDS | 45.0% | |
| !! | AGAATTGTGTTGACTCGTGG+GGG | - | chr5_4:17104293-17104312 | Msa0841130:intron | 45.0% |
| AACCAACGGCATTTAGGCTT+TGG | - | chr5_4:17104558-17104577 | Msa0841130:intron | 45.0% | |
| ACCAACGGCATTTAGGCTTT+GGG | - | chr5_4:17104559-17104578 | Msa0841130:intron | 45.0% | |
| !! | GCTTTAATTTGCAGGTGTGG+TGG | - | chr5_4:17104747-17104766 | Msa0841130:intron | 45.0% |
| AGTATATTGAGAGCGGTGAG+TGG | - | chr5_4:17104803-17104822 | Msa0841130:CDS | 45.0% | |
| AACTACCGCAACGTGAAGAA+CGG | + | chr5_4:17104896-17104915 | None:intergenic | 45.0% | |
| TAGCAGCAGCAAGAAGAACA+GGG | + | chr5_4:17105125-17105144 | None:intergenic | 45.0% | |
| TTAGCAGCAGCAAGAAGAAC+AGG | + | chr5_4:17105126-17105145 | None:intergenic | 45.0% | |
| TGTTCTTCTTGCTGCTGCTA+AGG | - | chr5_4:17105125-17105144 | Msa0841130:CDS | 45.0% | |
| GTTCTTCTTGCTGCTGCTAA+GGG | - | chr5_4:17105126-17105145 | Msa0841130:CDS | 45.0% | |
| TCTTTACCGTTGTACACCGT+TGG | - | chr5_4:17105170-17105189 | Msa0841130:CDS | 45.0% | |
| TGCGATAATTATCATCGGCC+AGG | + | chr5_4:17105200-17105219 | None:intergenic | 45.0% | |
| ! | GAGGCATTTGAGGAAATCGT+TGG | + | chr5_4:17105367-17105386 | None:intergenic | 45.0% |
| ! | AAGTGTGATTTGTGGGCAAG+AGG | + | chr5_4:17105386-17105405 | None:intergenic | 45.0% |
| ATGCGTGCCAATGCGTATAA+TGG | + | chr5_4:17105428-17105447 | None:intergenic | 45.0% | |
| ATGCCTTCTGTGTTTCCAAG+TGG | - | chr5_4:17105446-17105465 | Msa0841130:intron | 45.0% | |
| CTACCACTTGGAAACACAGA+AGG | + | chr5_4:17105452-17105471 | None:intergenic | 45.0% | |
| TCTGTGTTTCCAAGTGGTAG+TGG | - | chr5_4:17105452-17105471 | Msa0841130:intron | 45.0% | |
| AACCCATATCCACTACCACT+TGG | + | chr5_4:17105464-17105483 | None:intergenic | 45.0% | |
| TCGGGGACATCCGATAAAAT+TGG | + | chr5_4:17106045-17106064 | None:intergenic | 45.0% | |
| ! | ATTTTATCGGATGTCCCCGA+AGG | - | chr5_4:17106045-17106064 | Msa0841130:intron | 45.0% |
| ! | TTTTATCGGATGTCCCCGAA+GGG | - | chr5_4:17106046-17106065 | Msa0841130:intron | 45.0% |
| TACTCCTCAATTGTCCCTTC+GGG | + | chr5_4:17106063-17106082 | None:intergenic | 45.0% | |
| ATATGCGAATGGCGATTCTG+AGG | - | chr5_4:17106366-17106385 | Msa0841130:intron | 45.0% | |
| GTCTTGTAATCCAGACCCTA+AGG | - | chr5_4:17106601-17106620 | Msa0841130:intron | 45.0% | |
| ! | GGCTTTGTATTCACACCCTT+AGG | + | chr5_4:17106620-17106639 | None:intergenic | 45.0% |
| TCCCTCCAATTGTATCCATC+AGG | - | chr5_4:17106878-17106897 | Msa0841130:intron | 45.0% | |
| ATGTTGCAAGCAGCAAAGCA+TGG | - | chr5_4:17107025-17107044 | Msa0841130:CDS | 45.0% | |
| TGTTGCAAGCAGCAAAGCAT+GGG | - | chr5_4:17107026-17107045 | Msa0841130:CDS | 45.0% | |
| AGGGTAATCCTGACCTCTTA+TGG | - | chr5_4:17107077-17107096 | Msa0841130:CDS | 45.0% | |
| GGGTAATCCTGACCTCTTAT+GGG | - | chr5_4:17107078-17107097 | Msa0841130:CDS | 45.0% | |
| TGCAACTGTAAATGGACGGA+AGG | - | chr5_4:17107180-17107199 | Msa0841130:CDS | 45.0% | |
| AAATGCCGTGTAGACGCATT+TGG | - | chr5_4:17107211-17107230 | Msa0841130:CDS | 45.0% | |
| TGGCAATTCCATGTTGCACT+TGG | - | chr5_4:17107231-17107250 | Msa0841130:CDS | 45.0% | |
| AATTCCATGTTGCACTTGGC+AGG | - | chr5_4:17107235-17107254 | Msa0841130:CDS | 45.0% | |
| ATATCCTGCCAAGTGCAACA+TGG | + | chr5_4:17107242-17107261 | None:intergenic | 45.0% | |
| CTACGATCAAGATCAGAGGA+AGG | + | chr5_4:17107271-17107290 | None:intergenic | 45.0% | |
| GGATCTACGATCAAGATCAG+AGG | + | chr5_4:17107275-17107294 | None:intergenic | 45.0% | |
| TCTCTTTGCATCTGCATAGC+AGG | + | chr5_4:17107301-17107320 | None:intergenic | 45.0% | |
| CATGTATGTATGCGAGTGAG+AGG | + | chr5_4:17107368-17107387 | None:intergenic | 45.0% | |
| CATGCGTGCAGCTTATATGT+TGG | - | chr5_4:17107384-17107403 | Msa0841130:intron | 45.0% | |
| AATTGTGCACCCCAAGTGTA+AGG | - | chr5_4:17107826-17107845 | Msa0841130:intron | 45.0% | |
| GTGATGTCGTGCAAGAACAA+GGG | + | chr5_4:17108043-17108062 | None:intergenic | 45.0% | |
| TGTGATGTCGTGCAAGAACA+AGG | + | chr5_4:17108044-17108063 | None:intergenic | 45.0% | |
| ACTTCGGTCCTTCTCTTCAT+TGG | - | chr5_4:17108112-17108131 | Msa0841130:intron | 45.0% | |
| ! | CATTGCCCTTTTCTTCTCTG+TGG | - | chr5_4:17108204-17108223 | Msa0841130:CDS | 45.0% |
| CATAGCAAGTGAAGCACAGA+AGG | + | chr5_4:17108245-17108264 | None:intergenic | 45.0% | |
| GACGGAACTAGAACGATAAC+AGG | + | chr5_4:17108322-17108341 | None:intergenic | 45.0% | |
| ATCTTGTGGGACATGGTCTG+TGG | - | chr5_4:17103688-17103707 | Msa0841130:CDS | 50.0% | |
| TCTTGTGGGACATGGTCTGT+GGG | - | chr5_4:17103689-17103708 | Msa0841130:CDS | 50.0% | |
| GCCGATCCAGATATTGAGCA+AGG | - | chr5_4:17103906-17103925 | Msa0841130:CDS | 50.0% | |
| AAACCTCTCCCAAGACGATC+TGG | - | chr5_4:17104364-17104383 | Msa0841130:intron | 50.0% | |
| AAACCAGATCGTCTTGGGAG+AGG | + | chr5_4:17104370-17104389 | None:intergenic | 50.0% | |
| TCTCCCAAGACGATCTGGTT+TGG | - | chr5_4:17104369-17104388 | Msa0841130:intron | 50.0% | |
| ! | CTCCCAAGACGATCTGGTTT+GGG | - | chr5_4:17104370-17104389 | Msa0841130:intron | 50.0% |
| ! | TCCCAAGACGATCTGGTTTG+GGG | - | chr5_4:17104371-17104390 | Msa0841130:intron | 50.0% |
| TCCCCAAACCAGATCGTCTT+GGG | + | chr5_4:17104375-17104394 | None:intergenic | 50.0% | |
| ACCCAAAGCCTAAATGCCGT+TGG | + | chr5_4:17104563-17104582 | None:intergenic | 50.0% | |
| !! | AACGGCATTTAGGCTTTGGG+TGG | - | chr5_4:17104562-17104581 | Msa0841130:intron | 50.0% |
| ATTCCACATCCTCTATGGGG+AGG | - | chr5_4:17104869-17104888 | Msa0841130:CDS | 50.0% | |
| TTCACGTTGCGGTAGTTGCT+GGG | - | chr5_4:17104899-17104918 | Msa0841130:CDS | 50.0% | |
| CAGCTCAGCAACAAGAGCTA+GGG | + | chr5_4:17105004-17105023 | None:intergenic | 50.0% | |
| TCAGCTCAGCAACAAGAGCT+AGG | + | chr5_4:17105005-17105024 | None:intergenic | 50.0% | |
| GGTCTTCCAACGGTGTACAA+CGG | + | chr5_4:17105179-17105198 | None:intergenic | 50.0% | |
| TTGTACACCGTTGGAAGACC+TGG | - | chr5_4:17105179-17105198 | Msa0841130:CDS | 50.0% | |
| !! | TTGTGGGCAAGAGGCATTTG+AGG | + | chr5_4:17105377-17105396 | None:intergenic | 50.0% |
| ACTCCTCAATTGTCCCTTCG+GGG | + | chr5_4:17106062-17106081 | None:intergenic | 50.0% | |
| TCACAACAAGGGTTCGCACA+AGG | + | chr5_4:17106537-17106556 | None:intergenic | 50.0% | |
| TCCGTTTGTGTGCTTTGCAC+CGG | - | chr5_4:17106574-17106593 | Msa0841130:intron | 50.0% | |
| TCCGGTGCAAAGCACACAAA+CGG | + | chr5_4:17106578-17106597 | None:intergenic | 50.0% | |
| GTATTCACACCCTTAGGGTC+TGG | + | chr5_4:17106614-17106633 | None:intergenic | 50.0% | |
| TCAATGGCCCATAAGAGGTC+AGG | + | chr5_4:17107088-17107107 | None:intergenic | 50.0% | |
| TTGCATCTGCATAGCAGGAC+CGG | + | chr5_4:17107296-17107315 | None:intergenic | 50.0% | |
| TACAGAAAGCCACAAGGAGC+TGG | - | chr5_4:17107889-17107908 | Msa0841130:intron | 50.0% | |
| ACAAGGAGCTGGTGAAAGCT+GGG | - | chr5_4:17107900-17107919 | Msa0841130:intron | 50.0% | |
| TGGTGAAAGCTGGGGAGAAA+TGG | - | chr5_4:17107909-17107928 | Msa0841130:intron | 50.0% | |
| GGTGAAAGCTGGGGAGAAAT+GGG | - | chr5_4:17107910-17107929 | Msa0841130:intron | 50.0% | |
| TTTCAGCGTAACGAGCCGTT+AGG | + | chr5_4:17108141-17108160 | None:intergenic | 50.0% | |
| ! | AGGAAGAGGCGCAATTGTGA+CGG | + | chr5_4:17108340-17108359 | None:intergenic | 50.0% |
| CTTGTGGGACATGGTCTGTG+GGG | - | chr5_4:17103690-17103709 | Msa0841130:CDS | 55.0% | |
| GTCCCCAAACCAGATCGTCT+TGG | + | chr5_4:17104376-17104395 | None:intergenic | 55.0% | |
| GGTTTGGGGACGAAGCAATG+AGG | - | chr5_4:17104385-17104404 | Msa0841130:intron | 55.0% | |
| AAGAACGGTCCTCCCCATAG+AGG | + | chr5_4:17104881-17104900 | None:intergenic | 55.0% | |
| GAGGACCGTTCTTCACGTTG+CGG | - | chr5_4:17104888-17104907 | Msa0841130:CDS | 55.0% | |
| CTTCACGTTGCGGTAGTTGC+TGG | - | chr5_4:17104898-17104917 | Msa0841130:CDS | 55.0% | |
| GCTCTTGTTGCTGAGCTGAC+CGG | - | chr5_4:17105006-17105025 | Msa0841130:CDS | 55.0% | |
| TCATCGGCCAGGTCTTCCAA+CGG | + | chr5_4:17105189-17105208 | None:intergenic | 55.0% | |
| TGTCCCCGAAGGGACAATTG+AGG | - | chr5_4:17106056-17106075 | Msa0841130:intron | 55.0% | |
| CAGCTTTCACCAGCTCCTTG+TGG | + | chr5_4:17107901-17107920 | None:intergenic | 55.0% | |
| CACAAGGAGCTGGTGAAAGC+TGG | - | chr5_4:17107899-17107918 | Msa0841130:intron | 55.0% | |
| CAAGGAGCTGGTGAAAGCTG+GGG | - | chr5_4:17107901-17107920 | Msa0841130:intron | 55.0% | |
| GGTCCTCCCCATAGAGGATG+TGG | + | chr5_4:17104875-17104894 | None:intergenic | 60.0% | |
| GCTGCAGCTTTCACTGTCCC+TGG | - | chr5_4:17107992-17108011 | Msa0841130:intron | 60.0% | |
| GCAGCTTTCACTGTCCCTGG+TGG | - | chr5_4:17107995-17108014 | Msa0841130:intron | 60.0% | |
| TGCGGTAGTTGCTGGGCACG+AGG | - | chr5_4:17104906-17104925 | Msa0841130:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 17103684 | 17108447 | 17103684 | ID=Msa0841130;Name=Msa0841130 |
| chr5_4 | mRNA | 17103684 | 17108447 | 17103684 | ID=Msa0841130-mRNA-1;Parent=Msa0841130;Name=Msa0841130-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|0.16|0.14|7|0|610 |
| chr5_4 | exon | 17108204 | 17108447 | 17108204 | ID=Msa0841130-mRNA-1:exon:7367;Parent=Msa0841130-mRNA-1 |
| chr5_4 | exon | 17107140 | 17107370 | 17107140 | ID=Msa0841130-mRNA-1:exon:7366;Parent=Msa0841130-mRNA-1 |
| chr5_4 | exon | 17106909 | 17107130 | 17106909 | ID=Msa0841130-mRNA-1:exon:7365;Parent=Msa0841130-mRNA-1 |
| chr5_4 | exon | 17106625 | 17106786 | 17106625 | ID=Msa0841130-mRNA-1:exon:7364;Parent=Msa0841130-mRNA-1 |
| chr5_4 | exon | 17104983 | 17105231 | 17104983 | ID=Msa0841130-mRNA-1:exon:7363;Parent=Msa0841130-mRNA-1 |
| chr5_4 | exon | 17104795 | 17104973 | 17104795 | ID=Msa0841130-mRNA-1:exon:7362;Parent=Msa0841130-mRNA-1 |
| chr5_4 | exon | 17103684 | 17104226 | 17103684 | ID=Msa0841130-mRNA-1:exon:7361;Parent=Msa0841130-mRNA-1 |
| chr5_4 | CDS | 17108204 | 17108447 | 17108204 | ID=Msa0841130-mRNA-1:cds;Parent=Msa0841130-mRNA-1 |
| chr5_4 | CDS | 17107140 | 17107370 | 17107140 | ID=Msa0841130-mRNA-1:cds;Parent=Msa0841130-mRNA-1 |
| chr5_4 | CDS | 17106909 | 17107130 | 17106909 | ID=Msa0841130-mRNA-1:cds;Parent=Msa0841130-mRNA-1 |
| chr5_4 | CDS | 17106625 | 17106786 | 17106625 | ID=Msa0841130-mRNA-1:cds;Parent=Msa0841130-mRNA-1 |
| chr5_4 | CDS | 17104983 | 17105231 | 17104983 | ID=Msa0841130-mRNA-1:cds;Parent=Msa0841130-mRNA-1 |
| chr5_4 | CDS | 17104795 | 17104973 | 17104795 | ID=Msa0841130-mRNA-1:cds;Parent=Msa0841130-mRNA-1 |
| chr5_4 | CDS | 17103684 | 17104226 | 17103684 | ID=Msa0841130-mRNA-1:cds;Parent=Msa0841130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
