AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0633630

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0633630 MtrunA17_Chr4g0011791 99.018 509 5 0 1 509 1 509 0.0 1045
Msa0633630 MtrunA17_Chr4g0011771 73.450 516 127 6 1 509 1 513 0.0 776
Msa0633630 MtrunA17_Chr8g0391311 49.438 534 229 13 7 509 18 541 1.30e-176 508
Msa0633630 MtrunA17_Chr8g0391291 49.438 534 229 13 7 509 16 539 2.03e-176 507
Msa0633630 MtrunA17_Chr4g0018371 50.297 505 226 10 29 509 36 539 3.27e-170 491
Msa0633630 MtrunA17_Chr3g0090091 50.099 507 229 11 23 509 26 528 8.65e-167 482
Msa0633630 MtrunA17_Chr3g0079361 49.143 525 239 14 9 509 7 527 7.92e-164 474
Msa0633630 MtrunA17_Chr3g0079341 48.015 529 246 13 6 509 3 527 9.33e-164 474
Msa0633630 MtrunA17_Chr3g0079351 49.605 506 232 12 23 509 26 527 1.13e-162 471
Msa0633630 MtrunA17_Chr7g0269541 47.339 545 246 13 1 505 9 552 1.05e-160 468
Msa0633630 MtrunA17_Chr7g0233771 46.589 513 243 11 24 509 46 554 2.10e-147 433
Msa0633630 MtrunA17_Chr8g0345281 46.869 527 229 14 29 509 68 589 4.26e-146 431
Msa0633630 MtrunA17_Chr4g0011751 51.740 431 186 9 95 509 65 489 6.58e-144 422
Msa0633630 MtrunA17_Chr7g0233831 44.527 539 257 15 1 509 29 555 2.58e-142 421
Msa0633630 MtrunA17_Chr7g0272141 49.443 449 189 10 91 509 102 542 3.27e-142 420
Msa0633630 MtrunA17_Chr1g0192331 46.067 534 242 14 6 509 11 528 2.25e-141 417
Msa0633630 MtrunA17_Chr4g0069841 51.025 439 183 9 95 509 86 516 3.90e-141 416
Msa0633630 MtrunA17_Chr3g0126771 43.321 524 252 11 28 509 77 597 5.91e-140 416
Msa0633630 MtrunA17_Chr2g0302021 50.228 438 191 8 95 509 92 525 2.57e-139 412
Msa0633630 MtrunA17_Chr1g0195301 46.241 532 223 16 33 509 32 555 6.14e-139 412
Msa0633630 MtrunA17_Chr1g0195321 46.241 532 223 16 33 509 32 555 6.14e-139 412
Msa0633630 MtrunA17_Chr1g0195331 46.429 532 222 16 33 509 32 555 9.27e-139 411
Msa0633630 MtrunA17_Chr1g0175661 50.108 465 180 14 95 509 96 558 2.11e-137 408
Msa0633630 MtrunA17_Chr1g0147051 42.115 539 263 12 18 509 71 607 3.26e-137 409
Msa0633630 MtrunA17_Chr7g0233801 44.574 516 248 14 24 509 46 553 1.07e-136 406
Msa0633630 MtrunA17_Chr1g0195351 45.865 532 223 17 33 509 32 553 9.50e-135 401
Msa0633630 MtrunA17_Chr7g0269531 44.906 530 232 15 33 509 43 565 2.11e-134 400
Msa0633630 MtrunA17_Chr3g0080391 44.660 515 244 12 27 509 69 574 7.09e-134 399
Msa0633630 MtrunA17_Chr8g0354901 45.703 512 245 15 27 509 74 581 2.44e-131 393
Msa0633630 MtrunA17_Chr7g0269511 44.925 532 229 16 33 509 42 564 2.97e-131 392
Msa0633630 MtrunA17_Chr7g0269521 43.609 532 242 13 30 509 37 562 1.86e-128 385
Msa0633630 MtrunA17_Chr8g0354911 43.327 547 228 15 33 509 78 612 4.24e-128 386
Msa0633630 MtrunA17_Chr4g0069881 43.701 508 253 14 26 509 37 535 1.66e-127 382
Msa0633630 MtrunA17_Chr4g0069861 45.475 442 207 8 95 509 83 517 3.87e-125 375
Msa0633630 MtrunA17_Chr4g0069891 40.952 525 266 13 23 509 75 593 5.20e-123 372
Msa0633630 MtrunA17_Chr1g0195311 64.639 263 89 3 250 509 53 314 2.23e-120 355
Msa0633630 MtrunA17_Chr3g0080381 41.989 543 243 17 33 509 92 628 1.15e-117 360
Msa0633630 MtrunA17_Chr1g0194091 40.812 468 228 10 90 509 103 569 3.60e-112 343
Msa0633630 MtrunA17_Chr1g0192321 38.390 534 276 14 25 508 52 582 2.77e-111 342
Msa0633630 MtrunA17_Chr8g0345211 39.258 512 278 11 27 509 75 582 2.17e-107 332
Msa0633630 MtrunA17_Chr1g0192311 35.674 527 279 13 25 505 54 566 1.56e-104 324
Msa0633630 MtrunA17_Chr1g0192281 35.674 527 279 13 25 505 54 566 1.56e-104 324
Msa0633630 MtrunA17_Chr7g0272151 37.406 532 281 16 25 508 55 582 2.35e-103 322
Msa0633630 MtrunA17_Chr1g0194081 38.618 492 259 13 59 509 74 563 8.96e-102 317
Msa0633630 MtrunA17_Chr3g0129921 37.091 550 291 17 7 508 21 563 1.41e-101 316
Msa0633630 MtrunA17_Chr8g0384121 38.477 512 263 14 27 498 54 553 1.04e-100 314
Msa0633630 MtrunA17_Chr7g0270691 37.812 521 274 16 29 509 39 549 6.23e-100 311
Msa0633630 MtrunA17_Chr7g0270661 39.700 466 225 10 93 504 106 569 1.92e-99 311
Msa0633630 MtrunA17_Chr7g0270671 39.700 466 225 10 93 504 106 569 1.92e-99 311
Msa0633630 MtrunA17_Chr1g0192301 34.690 516 299 12 25 505 59 571 6.20e-99 310
Msa0633630 MtrunA17_Chr4g0000121 34.345 527 286 13 25 505 41 553 2.77e-98 308
Msa0633630 MtrunA17_Chr7g0270651 37.792 471 237 11 93 509 106 574 1.12e-96 304
Msa0633630 MtrunA17_Chr7g0234711 61.842 228 83 3 286 509 42 269 4.19e-96 292
Msa0633630 MtrunA17_Chr2g0302001 47.368 323 158 6 191 509 123 437 2.13e-95 296
Msa0633630 MtrunA17_Chr4g0067611 35.238 525 291 14 25 508 55 571 1.84e-92 293
Msa0633630 MtrunA17_Chr2g0301931 49.291 282 137 5 231 509 14 292 4.24e-91 280
Msa0633630 MtrunA17_Chr2g0295551 35.135 518 296 14 25 508 52 563 8.30e-91 288
Msa0633630 MtrunA17_Chr4g0067601 34.549 521 292 13 29 508 59 571 4.71e-90 286
Msa0633630 MtrunA17_Chr7g0270631 37.838 444 229 8 93 489 94 537 7.99e-89 295
Msa0633630 MtrunA17_Chr7g0270631 36.484 455 224 11 93 487 642 1091 5.48e-77 262
Msa0633630 MtrunA17_Chr2g0295531 32.448 527 325 12 7 506 21 543 1.59e-88 283
Msa0633630 MtrunA17_Chr2g0295541 33.333 549 295 15 25 508 52 594 4.30e-85 274
Msa0633630 MtrunA17_Chr8g0380581 43.917 337 169 10 182 506 45 373 1.01e-83 264
Msa0633630 MtrunA17_Chr5g0437831 40.762 341 189 8 179 509 46 383 1.17e-77 248
Msa0633630 MtrunA17_Chr7g0268241 40.557 323 176 7 193 509 38 350 8.08e-72 232
Msa0633630 MtrunA17_Chr2g0334111 40.705 312 167 7 204 509 24 323 7.04e-71 229
Msa0633630 MtrunA17_Chr7g0271381 30.156 514 317 16 25 509 56 556 1.96e-67 226
Msa0633630 MtrunA17_Chr8g0391261 63.235 136 48 1 376 509 31 166 1.43e-56 186
Msa0633630 MtrunA17_Chr7g0234731 40.146 274 145 9 23 281 45 314 2.20e-54 185
Msa0633630 MtrunA17_Chr6g0487101 39.735 302 152 9 213 498 93 380 3.70e-51 179
Msa0633630 MtrunA17_Chr8g0391281 35.974 303 156 11 7 281 16 308 7.27e-51 176
Msa0633630 MtrunA17_Chr6g0453551 35.644 303 167 9 205 492 6 295 2.59e-49 172
Msa0633630 MtrunA17_Chr8g0389771 37.419 310 164 9 206 498 81 377 2.72e-49 174
Msa0633630 MtrunA17_Chr6g0466951 34.296 277 159 7 203 471 67 328 3.25e-45 162
Msa0633630 MtrunA17_Chr7g0217941 34.448 299 172 7 207 492 8 295 5.80e-45 160
Msa0633630 MtrunA17_Chr2g0299431 42.918 233 126 5 179 406 28 258 1.02e-44 159
Msa0633630 MtrunA17_Chr1g0194311 32.919 322 189 8 190 498 61 368 4.99e-44 159
Msa0633630 MtrunA17_Chr7g0258341 32.132 333 194 9 180 498 73 387 1.84e-43 158
Msa0633630 MtrunA17_Chr6g0466961 34.545 275 157 6 205 471 40 299 5.70e-42 152
Msa0633630 MtrunA17_Chr2g0294321 31.746 315 192 8 194 498 45 346 1.75e-40 149
Msa0633630 MtrunA17_Chr1g0161731 30.892 314 186 8 200 502 44 337 7.67e-39 144
Msa0633630 MtrunA17_Chr5g0446301 33.225 307 170 8 211 498 67 357 1.79e-37 141
Msa0633630 MtrunA17_Chr4g0070051 31.889 323 185 11 193 498 39 343 6.66e-36 136
Msa0633630 MtrunA17_Chr2g0295851 31.803 305 174 11 205 498 55 336 4.16e-34 131
Msa0633630 MtrunA17_Chr5g0399221 29.808 312 192 8 205 501 63 362 4.35e-33 129
Msa0633630 MtrunA17_Chr7g0265201 30.492 305 183 7 207 500 101 387 1.93e-31 125
Msa0633630 MtrunA17_Chr5g0440871 29.195 298 193 6 205 500 39 320 2.87e-31 123
Msa0633630 MtrunA17_Chr4g0037751 29.063 320 193 11 194 498 61 361 2.93e-31 124
Msa0633630 MtrunA17_Chr5g0437821 43.182 132 71 2 315 442 4 135 3.63e-31 117
Msa0633630 MtrunA17_Chr8g0351871 27.541 305 195 6 205 498 33 322 5.24e-31 122
Msa0633630 MtrunA17_Chr6g0459781 37.853 177 99 4 198 363 6 182 1.55e-30 118
Msa0633630 MtrunA17_Chr5g0420831 28.280 343 218 10 171 498 32 361 1.90e-29 119
Msa0633630 MtrunA17_Chr4g0025841 31.276 243 148 6 205 443 37 264 1.72e-24 102
Msa0633630 MtrunA17_Chr5g0440901 35.099 151 89 3 294 443 1 143 6.27e-23 95.1
Msa0633630 MtrunA17_Chr2g0314691 26.415 212 140 4 290 498 3 201 2.47e-21 92.0
Msa0633630 MtrunA17_Chr7g0265161 31.461 178 92 4 267 439 5 157 4.14e-17 80.9
Msa0633630 MtrunA17_Chr6g0460141 36.567 134 75 3 232 355 5 138 5.03e-16 75.5
Msa0633630 MtrunA17_Chr5g0440891 32.692 156 93 5 205 356 48 195 1.71e-14 72.4
Msa0633630 MtrunA17_Chr6g0459791 37.398 123 66 4 377 498 4 116 5.53e-14 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0633630 AT2G45220.1 66.732 514 162 6 1 509 2 511 0.0 709
Msa0633630 AT5G51490.1 52.183 504 211 10 32 509 37 536 1.77e-176 507
Msa0633630 AT5G51500.1 50.690 507 224 9 27 509 36 540 5.98e-168 486
Msa0633630 AT3G47400.1 49.213 508 228 10 32 509 87 594 3.37e-163 476
Msa0633630 AT4G00190.1 49.691 485 218 8 33 509 8 474 6.03e-162 468
Msa0633630 AT1G23200.1 46.140 544 231 13 19 509 20 554 9.14e-158 460
Msa0633630 AT3G49220.1 44.727 512 252 9 28 509 86 596 2.91e-142 422
Msa0633630 AT3G49220.3 44.727 512 252 9 28 509 131 641 7.63e-142 422
Msa0633630 AT3G59010.1 51.157 432 184 5 98 509 104 528 1.68e-141 418
Msa0633630 AT1G11580.1 46.351 507 250 10 25 509 51 557 2.29e-141 419
Msa0633630 AT5G53370.1 44.250 513 254 8 28 509 74 585 2.64e-141 419
Msa0633630 AT5G53370.2 44.250 513 254 8 28 509 110 621 3.26e-141 420
Msa0633630 AT1G11580.2 46.351 507 250 10 25 509 72 578 6.58e-141 418
Msa0633630 AT3G14310.1 44.917 541 239 13 25 509 55 592 1.19e-140 418
Msa0633630 AT1G53830.1 45.000 540 244 13 19 509 52 587 5.54e-139 413
Msa0633630 AT3G05620.1 46.091 486 219 11 57 509 66 541 3.15e-136 405
Msa0633630 AT3G43270.1 48.107 449 196 9 95 509 80 525 1.23e-135 403
Msa0633630 AT4G02320.1 47.661 449 206 10 89 509 71 518 3.39e-135 401
Msa0633630 AT3G60730.1 45.833 456 206 8 93 509 66 519 1.35e-132 395
Msa0633630 AT2G43050.1 49.296 426 193 9 98 509 100 516 1.47e-130 389
Msa0633630 AT4G33220.1 45.887 462 197 9 95 509 68 523 1.32e-129 387
Msa0633630 AT4G02330.1 41.840 576 251 19 6 509 8 571 6.38e-128 384
Msa0633630 AT2G47550.1 49.676 463 184 13 94 509 98 558 3.01e-127 382
Msa0633630 AT4G02300.1 45.598 443 216 8 92 509 90 532 3.29e-127 381
Msa0633630 AT1G02810.1 41.186 590 246 18 5 509 4 577 6.59e-126 380
Msa0633630 AT2G26450.1 42.717 508 259 15 29 509 109 611 4.82e-123 373
Msa0633630 AT4G33220.2 54.491 334 144 5 182 509 71 402 5.95e-123 366
Msa0633630 AT3G05610.1 38.566 516 282 13 25 509 54 565 2.54e-119 365
Msa0633630 AT5G04960.1 40.275 509 262 12 28 507 67 562 5.98e-119 361
Msa0633630 AT3G10710.1 41.797 512 260 13 23 509 63 561 4.06e-118 359
Msa0633630 AT5G20860.2 44.444 432 214 9 99 509 112 538 5.25e-118 358
Msa0633630 AT2G26440.1 40.504 516 271 11 27 509 35 547 5.73e-117 355
Msa0633630 AT3G10720.2 41.078 538 251 15 33 509 83 615 3.05e-116 356
Msa0633630 AT5G49180.1 40.698 516 259 17 24 505 64 566 3.62e-115 352
Msa0633630 AT5G27870.1 36.965 514 291 12 25 509 53 562 1.84e-113 352
Msa0633630 AT5G04970.1 40.074 539 255 15 33 509 88 620 2.34e-113 348
Msa0633630 AT4G33230.1 40.414 532 266 14 19 509 85 606 1.05e-112 347
Msa0633630 AT1G53840.1 38.654 520 267 14 27 503 71 581 1.04e-107 333
Msa0633630 AT1G11590.1 37.736 530 297 11 6 509 2 524 1.50e-107 330
Msa0633630 AT3G06830.1 39.059 489 247 14 62 507 86 566 1.88e-107 332
Msa0633630 AT4G03930.1 37.358 530 299 11 6 509 2 524 7.49e-106 326
Msa0633630 AT3G27980.1 43.284 402 202 6 124 509 106 497 1.65e-105 324
Msa0633630 AT3G14300.1 38.431 510 268 11 27 498 457 958 4.93e-104 333
Msa0633630 AT3G10720.1 57.692 260 106 3 253 509 1 259 5.68e-103 310
Msa0633630 AT4G15980.1 47.278 349 174 7 168 507 353 700 1.02e-100 318
Msa0633630 AT4G15980.2 47.278 349 174 7 168 507 363 710 1.89e-100 318
Msa0633630 AT5G64640.1 36.364 517 283 14 26 501 90 601 6.14e-97 305
Msa0633630 AT5G09760.1 36.542 509 280 14 27 497 43 546 3.27e-93 294
Msa0633630 AT5G09760.2 36.542 509 280 14 27 497 69 572 5.18e-93 295
Msa0633630 AT5G20860.1 40.955 398 182 8 99 475 112 477 4.58e-92 290
Msa0633630 AT2G47030.1 43.678 348 175 8 181 509 243 588 4.75e-82 266
Msa0633630 AT2G47040.1 43.768 345 176 8 181 509 253 595 1.34e-79 260
Msa0633630 AT3G62170.1 41.292 356 180 8 181 509 235 588 7.03e-78 255
Msa0633630 AT1G11370.1 49.187 246 119 4 202 441 43 288 1.03e-73 235
Msa0633630 AT5G19730.1 37.134 307 167 8 206 498 87 381 7.96e-48 170
Msa0633630 AT3G29090.1 35.789 285 162 5 200 471 2 278 7.41e-47 166
Msa0633630 AT1G05310.1 33.038 339 195 9 174 498 68 388 1.31e-43 159
Msa0633630 AT3G17060.1 32.492 317 187 9 194 498 35 336 2.05e-43 157
Msa0633630 AT2G36700.1 32.667 300 184 5 207 498 44 333 2.44e-43 157
Msa0633630 AT2G36710.1 32.704 318 185 10 202 503 86 390 3.50e-40 150
Msa0633630 AT1G44980.1 43.617 188 101 3 183 365 54 241 1.44e-39 144
Msa0633630 AT5G18990.1 33.798 287 164 7 200 471 24 299 7.60e-38 142
Msa0633630 AT2G21610.1 30.100 299 187 7 205 498 51 332 8.43e-38 142
Msa0633630 AT2G21610.2 30.100 299 187 7 205 498 56 337 9.65e-38 142
Msa0633630 AT5G55590.1 33.333 309 179 9 205 498 82 378 7.22e-37 140
Msa0633630 AT2G19150.1 31.889 323 190 10 197 505 33 339 4.89e-36 137
Msa0633630 AT3G24130.1 32.155 283 170 6 202 471 31 304 1.50e-35 135
Msa0633630 AT5G47500.1 28.267 329 198 8 185 498 52 357 3.06e-35 135
Msa0633630 AT5G07430.1 28.610 374 232 12 140 498 2 355 6.23e-35 134
Msa0633630 AT5G26810.1 30.793 328 197 10 191 500 20 335 1.15e-34 133
Msa0633630 AT5G55590.2 35.573 253 139 8 205 442 82 325 4.37e-34 131
Msa0633630 AT3G49220.2 30.961 281 166 7 28 281 131 410 2.23e-33 131
Msa0633630 AT2G47280.1 30.421 309 184 8 205 498 35 327 2.18e-30 121
Msa0633630 AT2G19150.2 32.558 258 151 8 197 442 33 279 4.72e-29 116
Msa0633630 AT5G07420.1 27.859 341 214 10 176 498 29 355 7.97e-29 117
Msa0633630 AT5G07410.1 26.087 345 228 10 167 498 25 355 4.35e-26 109
Msa0633630 AT5G61680.1 27.885 312 200 9 198 498 61 358 4.47e-26 109
Msa0633630 AT1G69940.1 25.946 370 244 12 144 498 1 355 2.83e-25 107

Find 127 sgRNAs with CRISPR-Local

Find 385 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACAACTTTGTTACATTAT+TGG 0.127213 4_3:+19270220 None:intergenic
TGTATTACTAGTTAGTTTAT+TGG 0.189679 4_3:-19265499 Msa0633630:three_prime_UTR
TTGGCTGTTATATTGTATTT+AGG 0.191021 4_3:-19265480 Msa0633630:three_prime_UTR
GGTTTGATTGAAAGCATTAT+TGG 0.202138 4_3:+19270544 None:intergenic
GAATAATAATTCATAATTCT+AGG 0.226049 4_3:-19266038 Msa0633630:CDS
GGCACAGTTGATTTCATCTT+TGG 0.238399 4_3:-19266168 Msa0633630:CDS
TATGAACAACTTAGTATATA+TGG 0.278008 4_3:+19265601 None:intergenic
GAGAAGGGTTTATGAGGTTT+TGG 0.290145 4_3:+19270748 None:intergenic
CTGGACTTTAAGCGTTTCTT+TGG 0.291075 4_3:-19265687 Msa0633630:exon
GAATTATTATTCCAGTGTTT+TGG 0.305948 4_3:+19266049 None:intergenic
ACCGTTGGAAATTTCATTGC+CGG 0.321470 4_3:-19265748 Msa0633630:CDS
CAGGTTCATCCACTTCAAAT+AGG 0.323866 4_3:-19265825 Msa0633630:CDS
TTCATGAAAACTGTTATTGA+TGG 0.343065 4_3:-19265934 Msa0633630:CDS
TACAGAGAATGTAACATCTA+TGG 0.343919 4_3:-19266189 Msa0633630:CDS
AAGCTGTACTAAGCCATGTT+TGG 0.344214 4_3:+19270315 None:intergenic
TTCAATGGCTTCATTTCCTT+TGG 0.346370 4_3:-19270687 Msa0633630:exon
TACTCACATGGTTGAGGATA+AGG 0.351224 4_3:+19270575 None:intergenic
CAAGCTGTTGCATTTCGTTC+CGG 0.356258 4_3:-19266291 Msa0633630:CDS
ATTTCATTGCCGGTAATTCA+TGG 0.367149 4_3:-19265738 Msa0633630:CDS
GAATATGCTAATACAGGTTC+AGG 0.371500 4_3:-19265844 Msa0633630:CDS
AGCTGTACTAAGCCATGTTT+GGG 0.379379 4_3:+19270316 None:intergenic
CATCTTTGTAACTTGGTTGT+TGG 0.388751 4_3:+19270165 None:intergenic
GTTTCCTATCCATGAATTAC+CGG 0.395370 4_3:+19265729 None:intergenic
AACTTAGAGAAGGGTTTATG+AGG 0.395587 4_3:+19270742 None:intergenic
ACTCACATGGTTGAGGATAA+GGG 0.396273 4_3:+19270576 None:intergenic
ATGGTTGAGGATAAGGGGTT+TGG 0.402492 4_3:+19270582 None:intergenic
ACAATAGTGGAGAAAAGAAA+TGG 0.403364 4_3:+19270644 None:intergenic
TCTTGTGGGCTACGGCACTT+AGG 0.413550 4_3:+19270431 None:intergenic
CGTCGTTGCTAAGGATGGTT+CGG 0.414368 4_3:-19270069 Msa0633630:CDS
TTGTAACTTGGTTGTTGGTA+AGG 0.414505 4_3:+19270170 None:intergenic
TTCTAGGGTTTCCGCTCAAT+CGG 0.419321 4_3:-19266022 Msa0633630:CDS
AGGTTCATCCACTTCAAATA+GGG 0.421888 4_3:-19265824 Msa0633630:CDS
TTTGCAGCTGCTACTGGTGA+TGG 0.425142 4_3:-19266366 Msa0633630:intron
GTCGTTGCTAAGGATGGTTC+GGG 0.434190 4_3:-19270068 Msa0633630:CDS
TTATTTAAAAGAATTGTTGT+TGG 0.441698 4_3:-19265401 Msa0633630:three_prime_UTR
CATGGGTTAAACCTGGTGAT+AGG 0.443867 4_3:-19270133 Msa0633630:CDS
AGTTTCACTTGAACTTGCTA+TGG 0.444556 4_3:-19270495 Msa0633630:CDS
AACTTCTTCCGCGGCTTCGA+AGG 0.447444 4_3:-19270099 Msa0633630:CDS
CAAGCTTCACCTTTCACCGT+TGG 0.450223 4_3:-19265763 Msa0633630:CDS
AATAATAATTCATAATTCTA+GGG 0.452751 4_3:-19266037 Msa0633630:CDS
GGCTAATGTCGTCGTTGCTA+AGG 0.459522 4_3:-19270078 Msa0633630:CDS
CCACTTCAAATAGGGTTACA+TGG 0.460645 4_3:-19265816 Msa0633630:CDS
CTTGTGGGCTACGGCACTTA+GGG 0.460985 4_3:+19270432 None:intergenic
TATGCTGAATATGCTAATAC+AGG 0.469023 4_3:-19265850 Msa0633630:CDS
CAACAACCAAGTTACAAAGA+TGG 0.480845 4_3:-19270164 Msa0633630:CDS
CCCTGCTGGTTGGTTACCAT+GGG 0.482029 4_3:-19265902 Msa0633630:CDS
TCCTTGCGCGGTAACTGTGA+TGG 0.482943 4_3:+19266086 None:intergenic
TCGTTCCGGCTCCGATCTAT+CGG 0.484411 4_3:-19266277 Msa0633630:CDS
ACAGGCGTGCCATTCACCTC+TGG 0.485673 4_3:-19265706 Msa0633630:CDS
CTGTTAAATCGTACCTTGGT+AGG 0.486089 4_3:-19265984 Msa0633630:CDS
TGAGTAACCATAAACAATAG+TGG 0.489662 4_3:+19270631 None:intergenic
CCATGTAACCCTATTTGAAG+TGG 0.490411 4_3:+19265816 None:intergenic
ATGAAATTTCCAACGGTGAA+AGG 0.497356 4_3:+19265754 None:intergenic
GGAAATCCATCTTTGTAACT+TGG 0.499245 4_3:+19270158 None:intergenic
ATTGCCGGTAATTCATGGAT+AGG 0.500552 4_3:-19265733 Msa0633630:CDS
AAGTTGTTCATAAGATCAAT+TGG 0.501779 4_3:-19265590 Msa0633630:three_prime_UTR
TCCCATGGTAACCAACCAGC+AGG 0.502238 4_3:+19265901 None:intergenic
ACCCTGCTGGTTGGTTACCA+TGG 0.509749 4_3:-19265903 Msa0633630:CDS
TAACTAGTAATACATTTGAA+TGG 0.513519 4_3:+19265508 None:intergenic
GGTACGATTTAACAGAGCTA+GGG 0.515662 4_3:+19265992 None:intergenic
GATGCTGCACCAAGTGGTAG+TGG 0.515780 4_3:-19270017 Msa0633630:CDS
CATTAAGTTCCATAAAATCA+TGG 0.516559 4_3:-19270610 Msa0633630:CDS
ATGTTGGTGGGTGATGGTAT+TGG 0.525394 4_3:-19269927 Msa0633630:CDS
TCAAATAGGGTTACATGGAA+AGG 0.533882 4_3:-19265811 Msa0633630:CDS
AGGTACGATTTAACAGAGCT+AGG 0.534156 4_3:+19265991 None:intergenic
AAATAATACTCACATGGTTG+AGG 0.534999 4_3:+19270569 None:intergenic
ATTGGTAAAACTATAATCAC+TGG 0.535759 4_3:-19269909 Msa0633630:CDS
ATATAAAGACACTAAAATCA+AGG 0.536961 4_3:-19270795 None:intergenic
ATCACATTCAGAAACACTGC+TGG 0.539268 4_3:-19266327 Msa0633630:CDS
TCACCAGGTTTAACCCATGT+TGG 0.540325 4_3:+19270137 None:intergenic
TGAAGAAGTTTCCTATCACC+AGG 0.540939 4_3:+19270122 None:intergenic
ATGATGAGAAACTTAGAGAA+GGG 0.541566 4_3:+19270733 None:intergenic
ATCACTGGTAGCAAAAGTGT+TGG 0.542034 4_3:-19269894 Msa0633630:CDS
CTCACATGGTTGAGGATAAG+GGG 0.542503 4_3:+19270577 None:intergenic
ACCATCACAGTTACCGCGCA+AGG 0.543990 4_3:-19266087 Msa0633630:CDS
TTTGTAAAATACCGATAGAT+CGG 0.549087 4_3:+19266266 None:intergenic
ACAAAGATGGATTTCCAACA+TGG 0.557740 4_3:-19270151 Msa0633630:CDS
AATGTCGTCGTTGCTAAGGA+TGG 0.559942 4_3:-19270074 Msa0633630:CDS
AATGTCATGTTGGTGGGTGA+TGG 0.561648 4_3:-19269933 Msa0633630:CDS
ACTGGTAGCAAAAGTGTTGG+AGG 0.563435 4_3:-19269891 Msa0633630:CDS
TAAAGCAAAGAATGTCATGT+TGG 0.567010 4_3:-19269943 Msa0633630:CDS
ATTAAAAGAGTTGTTACCAA+AGG 0.567706 4_3:+19270671 None:intergenic
AATCGTACCTTGGTAGGCCG+TGG 0.576253 4_3:-19265978 Msa0633630:CDS
CACAATATGAATCCCAAACA+TGG 0.578929 4_3:-19270328 Msa0633630:CDS
GCTTAAAGTCCAGAGGTGAA+TGG 0.579277 4_3:+19265697 None:intergenic
TAACACCTTGTCACTTAACA+AGG 0.581892 4_3:-19270195 Msa0633630:CDS
AAATACCGATAGATCGGAGC+CGG 0.582499 4_3:+19266272 None:intergenic
TGTTACATTATTGGACAACA+AGG 0.584290 4_3:+19270229 None:intergenic
ACTGATCCAAACCAAAACAC+TGG 0.586539 4_3:-19266060 Msa0633630:CDS
TTTCCAACATGGGTTAAACC+TGG 0.589586 4_3:-19270140 Msa0633630:CDS
ACTTTCCGTTCAGCAACCGT+TGG 0.594941 4_3:-19269858 Msa0633630:intron
AGCAAAGAATGTCATGTTGG+TGG 0.597389 4_3:-19269940 Msa0633630:CDS
TATGATGAGAAACTTAGAGA+AGG 0.598833 4_3:+19270732 None:intergenic
TATGTGATATATGTGAAGGC+TGG 0.599695 4_3:-19269990 Msa0633630:CDS
GGGCAAGTACACGACGGTGA+AGG 0.602626 4_3:-19270048 Msa0633630:CDS
GCTGGTTGGTTACCATGGGA+TGG 0.604546 4_3:-19265898 Msa0633630:CDS
CTGCACCAAGTGGTAGTGGA+AGG 0.608150 4_3:-19270013 Msa0633630:CDS
TGGATCAGTTCTTCCTTGCG+CGG 0.608915 4_3:+19266074 None:intergenic
AAAGCAAAATTACCATCCCA+TGG 0.612268 4_3:+19265886 None:intergenic
CACGACGGTGAAGGCCGCGA+CGG 0.612289 4_3:-19270039 Msa0633630:CDS
GTTACATTATTGGACAACAA+GGG 0.617044 4_3:+19270230 None:intergenic
GACATTAGCCTTCGAAGCCG+CGG 0.622925 4_3:+19270091 None:intergenic
ACCGGCAATGAAATTTCCAA+CGG 0.623089 4_3:+19265747 None:intergenic
AGCTCTGTTAAATCGTACCT+TGG 0.625217 4_3:-19265988 Msa0633630:CDS
ACTTACCAACGGTTGCTGAA+CGG 0.626940 4_3:+19269853 None:intergenic
CAAAGATGGATTTCCAACAT+GGG 0.627787 4_3:-19270150 Msa0633630:CDS
GCAAAGAATGTCATGTTGGT+GGG 0.630792 4_3:-19269939 Msa0633630:CDS
ACTTCTTCAAACTTCTTCCG+CGG 0.630906 4_3:-19270108 Msa0633630:CDS
AGGGTTTAAATCCGATTGAG+CGG 0.635907 4_3:+19266011 None:intergenic
ACATACCTTCCACTACCACT+TGG 0.638708 4_3:+19270008 None:intergenic
GGTAGCAAAAGTGTTGGAGG+TGG 0.640198 4_3:-19269888 Msa0633630:CDS
GAGAAGCACTAGTAAGAACA+TGG 0.644219 4_3:+19265785 None:intergenic
GAAGAAAATACACATGCACT+TGG 0.644990 4_3:-19270455 Msa0633630:CDS
TTGGTTAAATAATACTCACA+TGG 0.648130 4_3:+19270563 None:intergenic
AAGGTATGTGATATATGTGA+AGG 0.653633 4_3:-19269994 Msa0633630:CDS
AGGAACCTTGTTAAGTGACA+AGG 0.653769 4_3:+19270190 None:intergenic
GCGACGGATGCTGCACCAAG+TGG 0.664715 4_3:-19270023 Msa0633630:CDS
GGTTGCTGAACGGAAAGTAG+TGG 0.670011 4_3:+19269863 None:intergenic
CCCATGGTAACCAACCAGCA+GGG 0.670836 4_3:+19265902 None:intergenic
AAGAAACGCTTAAAGTCCAG+AGG 0.675031 4_3:+19265690 None:intergenic
TTAATTGAGAACTAATCACA+AGG 0.685708 4_3:+19265563 None:intergenic
AATTCATGGATAGGAAACAC+AGG 0.687418 4_3:-19265724 Msa0633630:CDS
ACTTGGTGCAGCATCCGTCG+CGG 0.690402 4_3:+19270025 None:intergenic
AGACATAGTTTGTGACACCA+AGG 0.696122 4_3:+19270255 None:intergenic
TGAATTTATCAGAATCACAG+TGG 0.728182 4_3:-19265657 Msa0633630:three_prime_UTR
TTTCATCTTTGGTAACGCCG+CGG 0.758063 4_3:-19266157 Msa0633630:CDS
TGGTTCGGGCAAGTACACGA+CGG 0.758627 4_3:-19270054 Msa0633630:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAAATATTTAAATTAA+TGG + chr4_3:19266610-19266629 None:intergenic 0.0%
!!! TATAATTTTTTATATTTTTT+AGG - chr4_3:19268586-19268605 Msa0633630:intron 0.0%
!!! ATAATTTTTTATATTTTTTA+GGG - chr4_3:19268587-19268606 Msa0633630:intron 0.0%
!! AAATATAACAAATAACTTAA+AGG + chr4_3:19266760-19266779 None:intergenic 10.0%
!! AAATAAATAATTATATCAGT+AGG - chr4_3:19266878-19266897 Msa0633630:intron 10.0%
!! AATAAATAATTATATCAGTA+GGG - chr4_3:19266879-19266898 Msa0633630:intron 10.0%
!!! ATAATTGTTTTTTAATAGTT+TGG - chr4_3:19268062-19268081 Msa0633630:intron 10.0%
!!! TGATTTAATAATTTTTTATG+TGG + chr4_3:19268162-19268181 None:intergenic 10.0%
!!! TAAAGATTGAAAATTTTATA+GGG + chr4_3:19268432-19268451 None:intergenic 10.0%
!!! TATAATATTTTGAATTTTTC+TGG + chr4_3:19268516-19268535 None:intergenic 10.0%
!!! AAAAAATTCTAATTTTTTTC+AGG - chr4_3:19268641-19268660 Msa0633630:intron 10.0%
!!! TAGTTATTGAAAATTTTATA+GGG - chr4_3:19268746-19268765 Msa0633630:intron 10.0%
!! TTTCTTAATCATTAAATTAA+GGG + chr4_3:19269041-19269060 None:intergenic 10.0%
!! ATTTCTTAATCATTAAATTA+AGG + chr4_3:19269042-19269061 None:intergenic 10.0%
!! AATAATAATTCATAATTCTA+GGG - chr4_3:19270098-19270117 Msa0633630:CDS 10.0%
!!! TAACAATACAATTAATTTTT+TGG + chr4_3:19270703-19270722 None:intergenic 10.0%
!!! ATTGAAAAATGATGATTTTA+GGG + chr4_3:19265434-19265453 None:intergenic 15.0%
!!! AAAATCGGATTTATTTTTTA+TGG + chr4_3:19265615-19265634 None:intergenic 15.0%
!!! ATATTTACAAAAAAAAGTGT+CGG - chr4_3:19266718-19266737 Msa0633630:intron 15.0%
!! ATAAATAATTATATCAGTAG+GGG - chr4_3:19266880-19266899 Msa0633630:intron 15.0%
!! AATTTAATATCTCAATAATC+TGG - chr4_3:19267467-19267486 Msa0633630:intron 15.0%
!! ATTTAATATCTCAATAATCT+GGG - chr4_3:19267468-19267487 Msa0633630:intron 15.0%
!!! TTAATAATTTTTTATGTGGA+TGG + chr4_3:19268158-19268177 None:intergenic 15.0%
!!! GTAAAGATTGAAAATTTTAT+AGG + chr4_3:19268433-19268452 None:intergenic 15.0%
!!! AAATTTTCAATCTTTACTTT+TGG - chr4_3:19268436-19268455 Msa0633630:intron 15.0%
!!! GTAGTTATTGAAAATTTTAT+AGG - chr4_3:19268745-19268764 Msa0633630:intron 15.0%
!! GAATAATTATTTATATCCTT+TGG + chr4_3:19268907-19268926 None:intergenic 15.0%
!!! ATTACTTTAAAATCTCTTTA+CGG - chr4_3:19268951-19268970 Msa0633630:intron 15.0%
!! TTAAGATAATATATCATAGA+AGG + chr4_3:19268978-19268997 None:intergenic 15.0%
!! TTCAATTAAATCAATTATTG+TGG + chr4_3:19269073-19269092 None:intergenic 15.0%
!!! ATTCAATTCATTATGTTTTT+GGG + chr4_3:19269109-19269128 None:intergenic 15.0%
!!! TATTCAATTCATTATGTTTT+TGG + chr4_3:19269110-19269129 None:intergenic 15.0%
!! TTAAGGAAAAATATTAATCT+AGG + chr4_3:19269363-19269382 None:intergenic 15.0%
!! ACTTTAACTAATTTCTTAAT+TGG - chr4_3:19269415-19269434 Msa0633630:intron 15.0%
!! TTTAATTAAAAGAAGAATGT+GGG - chr4_3:19269514-19269533 Msa0633630:intron 15.0%
!! GAATAATAATTCATAATTCT+AGG - chr4_3:19270097-19270116 Msa0633630:CDS 15.0%
!! GAAAGAAAAATAATTTAGTA+CGG - chr4_3:19270677-19270696 Msa0633630:CDS 15.0%
!! TTATTTAAAAGAATTGTTGT+TGG - chr4_3:19270734-19270753 Msa0633630:five_prime_UTR 15.0%
!!! CATTGAAAAATGATGATTTT+AGG + chr4_3:19265435-19265454 None:intergenic 20.0%
!!! CTAAAATCATCATTTTTCAA+TGG - chr4_3:19265433-19265452 Msa0633630:three_prime_UTR 20.0%
!!! AAGTGAAACTTTGAAAAAAT+CGG + chr4_3:19265630-19265649 None:intergenic 20.0%
!! TAACAACTTTGTTACATTAT+TGG + chr4_3:19265918-19265937 None:intergenic 20.0%
!!! ATTTGTGAACTTTTCTTTAA+GGG + chr4_3:19266349-19266368 None:intergenic 20.0%
!!! TATTTGTGAACTTTTCTTTA+AGG + chr4_3:19266350-19266369 None:intergenic 20.0%
!! CTAGTTTATGATTTAGTTAT+TGG + chr4_3:19266456-19266475 None:intergenic 20.0%
!!! TGCATAAGATTTTTCAATAA+AGG + chr4_3:19266486-19266505 None:intergenic 20.0%
!! GAAAATTACTTATGAATGAT+AGG - chr4_3:19266645-19266664 Msa0633630:intron 20.0%
!!! TACTTATTTTATTTCCATCT+AGG - chr4_3:19266679-19266698 Msa0633630:intron 20.0%
!!! ACTTATTTTATTTCCATCTA+GGG - chr4_3:19266680-19266699 Msa0633630:intron 20.0%
!! AAAATTAATTTAACCCTAGA+TGG + chr4_3:19266696-19266715 None:intergenic 20.0%
!! AAAAAGTAAAATAACTCAAC+CGG + chr4_3:19267029-19267048 None:intergenic 20.0%
!!! TTAAACAAAGATGACATTTT+TGG + chr4_3:19267185-19267204 None:intergenic 20.0%
!!! AAAATGTCATCTTTGTTTAA+AGG - chr4_3:19267185-19267204 Msa0633630:intron 20.0%
!! GAATGAAATTCAATTGAAAA+AGG - chr4_3:19267523-19267542 Msa0633630:intron 20.0%
!!! TAACTTTTTTAGAAAGAAGA+AGG - chr4_3:19267591-19267610 Msa0633630:intron 20.0%
!!! TAAATCCATTATACTTTTGA+AGG - chr4_3:19267684-19267703 Msa0633630:intron 20.0%
!! TTTAAATTTAACCATGTTAG+TGG + chr4_3:19267805-19267824 None:intergenic 20.0%
!!! ATTGTTTTTTAATAGTTTGG+TGG - chr4_3:19268065-19268084 Msa0633630:intron 20.0%
!!! TTGTTTTTTAATAGTTTGGT+GGG - chr4_3:19268066-19268085 Msa0633630:intron 20.0%
!! GAAAAGTTGACATATTTATA+GGG + chr4_3:19268806-19268825 None:intergenic 20.0%
!!! AGTTGAAGGAAAATTTTAAA+GGG + chr4_3:19268403-19268422 None:intergenic 20.0%
!!! AAGTTGAAGGAAAATTTTAA+AGG + chr4_3:19268404-19268423 None:intergenic 20.0%
!!! TATGAGTTTACTTTAAAAGA+GGG + chr4_3:19268463-19268482 None:intergenic 20.0%
!!! ATATGAGTTTACTTTAAAAG+AGG + chr4_3:19268464-19268483 None:intergenic 20.0%
!! GAAAAGTTGACATATTTATA+GGG - chr4_3:19268806-19268825 Msa0633630:intron 20.0%
!!! AATTGGGTTAAATATGTTTT+TGG + chr4_3:19268833-19268852 None:intergenic 20.0%
!!! AGATTTTAAAGTAATCACAA+TGG + chr4_3:19268946-19268965 None:intergenic 20.0%
!!! ATCATAGTCTAAAACTTTAT+TGG + chr4_3:19269154-19269173 None:intergenic 20.0%
!! TATGATTTGAATCATTTACA+TGG - chr4_3:19269168-19269187 Msa0633630:intron 20.0%
!! GAATAAGACTATATTAAAGT+GGG + chr4_3:19269482-19269501 None:intergenic 20.0%
!! TGAATAAGACTATATTAAAG+TGG + chr4_3:19269483-19269502 None:intergenic 20.0%
!!! CACATTCTTCTTTTAATTAA+AGG + chr4_3:19269515-19269534 None:intergenic 20.0%
!! CTTTAATTAAAAGAAGAATG+TGG - chr4_3:19269513-19269532 Msa0633630:intron 20.0%
!! TTAATTAAAAGAAGAATGTG+GGG - chr4_3:19269515-19269534 Msa0633630:intron 20.0%
!! TTCAACTGATTATTAACTTA+TGG + chr4_3:19269558-19269577 None:intergenic 20.0%
!! TATGAACAACTTAGTATATA+TGG + chr4_3:19270537-19270556 None:intergenic 20.0%
!! TAACTAGTAATACATTTGAA+TGG + chr4_3:19270630-19270649 None:intergenic 20.0%
!!! TGTATTACTAGTTAGTTTAT+TGG - chr4_3:19270636-19270655 Msa0633630:CDS 20.0%
!!! AAAATGATGATTTTAGGGTA+TGG + chr4_3:19265429-19265448 None:intergenic 25.0%
! ATTAAAAGAGTTGTTACCAA+AGG + chr4_3:19265467-19265486 None:intergenic 25.0%
! CATTAAGTTCCATAAAATCA+TGG - chr4_3:19265525-19265544 Msa0633630:three_prime_UTR 25.0%
! TTGGTTAAATAATACTCACA+TGG + chr4_3:19265575-19265594 None:intergenic 25.0%
!!! AAAAATGGATTTTATGACCT+TGG - chr4_3:19265863-19265882 Msa0633630:CDS 25.0%
! ATTGGTAAAACTATAATCAC+TGG - chr4_3:19266226-19266245 Msa0633630:CDS 25.0%
!! CAGGTAAGAACTTTTTAATA+AGG + chr4_3:19266395-19266414 None:intergenic 25.0%
!! TGAATGAACTTTTCTTTTCT+TGG + chr4_3:19266424-19266443 None:intergenic 25.0%
! ACTTATGAATGATAGGTAAA+CGG - chr4_3:19266652-19266671 Msa0633630:intron 25.0%
! CATTGGTATAATTCTAGATT+TGG + chr4_3:19267268-19267287 None:intergenic 25.0%
! AATTACCAGCGATATATAAA+TGG + chr4_3:19267315-19267334 None:intergenic 25.0%
! CTTCAATTATGGCAATTAAT+GGG + chr4_3:19267414-19267433 None:intergenic 25.0%
! TCTTCAATTATGGCAATTAA+TGG + chr4_3:19267415-19267434 None:intergenic 25.0%
! CTTCATTTCTTCTTCAATTA+TGG + chr4_3:19267425-19267444 None:intergenic 25.0%
!!! TCAATAATCTGGGTTTTTTT+GGG - chr4_3:19267478-19267497 Msa0633630:intron 25.0%
!! AGCTTCTTTAAAAAAAATGC+AGG - chr4_3:19267547-19267566 Msa0633630:intron 25.0%
!! GCTTCTTTAAAAAAAATGCA+GGG - chr4_3:19267548-19267567 Msa0633630:intron 25.0%
!! TAGTTCCTTCAAAAGTATAA+TGG + chr4_3:19267692-19267711 None:intergenic 25.0%
!!! GTTGTTTCTTTGTAAGATTT+TGG + chr4_3:19267852-19267871 None:intergenic 25.0%
!! AAGAAACAACCTTTGATTTA+AGG - chr4_3:19267862-19267881 Msa0633630:intron 25.0%
!!! TGTTTTTTAATAGTTTGGTG+GGG - chr4_3:19268067-19268086 Msa0633630:intron 25.0%
! ATAATTAAACTTTCCCATCA+TGG - chr4_3:19268188-19268207 Msa0633630:intron 25.0%
! TAATTAAACTTTCCCATCAT+GGG - chr4_3:19268189-19268208 Msa0633630:intron 25.0%
!! TCAAGGGTTAAATATGTTTT+TGG - chr4_3:19268345-19268364 Msa0633630:intron 25.0%
! CGAAAAGTTGACATATTTAT+AGG + chr4_3:19268805-19268824 None:intergenic 25.0%
!! AAGTTGAAGGAAAATTTTAG+AGG - chr4_3:19268774-19268793 Msa0633630:intron 25.0%
!! AGTTGAAGGAAAATTTTAGA+GGG - chr4_3:19268775-19268794 Msa0633630:intron 25.0%
! CGAAAAGTTGACATATTTAT+AGG - chr4_3:19268805-19268824 Msa0633630:intron 25.0%
!! TCTGTGAGTAATTGATAATT+GGG + chr4_3:19268849-19268868 None:intergenic 25.0%
! ATTATCTACTTTCTTACTCA+AGG + chr4_3:19268881-19268900 None:intergenic 25.0%
!!! CTGCTTGCTTTTATATAATT+AGG + chr4_3:19269002-19269021 None:intergenic 25.0%
! ACATAATGAATTGAATATCG+TGG - chr4_3:19269113-19269132 Msa0633630:intron 25.0%
! TATGTAGCTTTCAAAAATGA+AGG - chr4_3:19269207-19269226 Msa0633630:intron 25.0%
! TTTAGTAGTCAAATCTTTAG+AGG - chr4_3:19269282-19269301 Msa0633630:intron 25.0%
! TTTGTAAAATACCGATAGAT+CGG + chr4_3:19269872-19269891 None:intergenic 25.0%
!! GAATTATTATTCCAGTGTTT+TGG + chr4_3:19270089-19270108 None:intergenic 25.0%
! TTCATGAAAACTGTTATTGA+TGG - chr4_3:19270201-19270220 Msa0633630:CDS 25.0%
! AAGTTGTTCATAAGATCAAT+TGG - chr4_3:19270545-19270564 Msa0633630:CDS 25.0%
! TTAATTGAGAACTAATCACA+AGG + chr4_3:19270575-19270594 None:intergenic 25.0%
! TTGGCTGTTATATTGTATTT+AGG - chr4_3:19270655-19270674 Msa0633630:CDS 25.0%
ATGATGAGAAACTTAGAGAA+GGG + chr4_3:19265405-19265424 None:intergenic 30.0%
TATGATGAGAAACTTAGAGA+AGG + chr4_3:19265406-19265425 None:intergenic 30.0%
! ACAATAGTGGAGAAAAGAAA+TGG + chr4_3:19265494-19265513 None:intergenic 30.0%
! CTTTTCTCCACTATTGTTTA+TGG - chr4_3:19265497-19265516 Msa0633630:three_prime_UTR 30.0%
TGAGTAACCATAAACAATAG+TGG + chr4_3:19265507-19265526 None:intergenic 30.0%
! TTGGTTACACCATGATTTTA+TGG + chr4_3:19265537-19265556 None:intergenic 30.0%
AAATAATACTCACATGGTTG+AGG + chr4_3:19265569-19265588 None:intergenic 30.0%
!! GGTTTGATTGAAAGCATTAT+TGG + chr4_3:19265594-19265613 None:intergenic 30.0%
!! ATTTTGTTTGGCTAAGCTTT+TGG + chr4_3:19265775-19265794 None:intergenic 30.0%
! TGCACTTTGTGTATTTTGTT+TGG + chr4_3:19265787-19265806 None:intergenic 30.0%
AACCTTGAAACATGCAAAAA+TGG - chr4_3:19265848-19265867 Msa0633630:CDS 30.0%
!! ATCCATTTTTGCATGTTTCA+AGG + chr4_3:19265853-19265872 None:intergenic 30.0%
GTTACATTATTGGACAACAA+GGG + chr4_3:19265908-19265927 None:intergenic 30.0%
TGTTACATTATTGGACAACA+AGG + chr4_3:19265909-19265928 None:intergenic 30.0%
AAGGTATGTGATATATGTGA+AGG - chr4_3:19266141-19266160 Msa0633630:CDS 30.0%
TAAAGCAAAGAATGTCATGT+TGG - chr4_3:19266192-19266211 Msa0633630:CDS 30.0%
!! TTACTAGAAGTACTTACCAA+CGG + chr4_3:19266296-19266315 None:intergenic 30.0%
AAGGGATAAAAAAAGCTGTA+CGG + chr4_3:19266331-19266350 None:intergenic 30.0%
TGCTTAGAAAGTTAACTAGT+CGG - chr4_3:19266513-19266532 Msa0633630:intron 30.0%
CTTATGAATGATAGGTAAAC+GGG - chr4_3:19266653-19266672 Msa0633630:intron 30.0%
TTATGAATGATAGGTAAACG+GGG - chr4_3:19266654-19266673 Msa0633630:intron 30.0%
TGAGAAGCTATGTATAACAA+CGG - chr4_3:19266924-19266943 Msa0633630:intron 30.0%
TTAAATTGAGAAGATGGGTA+GGG + chr4_3:19267155-19267174 None:intergenic 30.0%
GGATCTTAAATTGAGAAGAT+GGG + chr4_3:19267160-19267179 None:intergenic 30.0%
AGGATCTTAAATTGAGAAGA+TGG + chr4_3:19267161-19267180 None:intergenic 30.0%
!! ACAAAGATGACATTTTTGGA+AGG + chr4_3:19267181-19267200 None:intergenic 30.0%
AGAATTATACCAATGAAGTG+AGG - chr4_3:19267273-19267292 Msa0633630:intron 30.0%
GAATTATACCAATGAAGTGA+GGG - chr4_3:19267274-19267293 Msa0633630:intron 30.0%
! TTTTCACCTAAAAATCTCGT+CGG - chr4_3:19267335-19267354 Msa0633630:intron 30.0%
!!! CTCAATAATCTGGGTTTTTT+TGG - chr4_3:19267477-19267496 Msa0633630:intron 30.0%
!!! TTTTTTGGGACAGATTAATC+TGG - chr4_3:19267492-19267511 Msa0633630:intron 30.0%
!!! TTTTTGGGACAGATTAATCT+GGG - chr4_3:19267493-19267512 Msa0633630:intron 30.0%
AATACAGAAGTGAATATGAG+TGG - chr4_3:19267620-19267639 Msa0633630:intron 30.0%
!! TTTTGAAGGAACTATTTTCC+CGG - chr4_3:19267698-19267717 Msa0633630:intron 30.0%
AAATGAAAGAACCACTAACA+TGG - chr4_3:19267791-19267810 Msa0633630:intron 30.0%
AATTCAGGGGAAAAACAAAT+GGG + chr4_3:19267893-19267912 None:intergenic 30.0%
AAATTCAGGGGAAAAACAAA+TGG + chr4_3:19267894-19267913 None:intergenic 30.0%
TAGCCTTCTTTCAAAATTCA+GGG + chr4_3:19267907-19267926 None:intergenic 30.0%
ATAGCCTTCTTTCAAAATTC+AGG + chr4_3:19267908-19267927 None:intergenic 30.0%
! AATGGTGTGAAACTTTTTGT+TGG + chr4_3:19268116-19268135 None:intergenic 30.0%
!!! TGAAAGTTTTTTCCCATGAT+GGG + chr4_3:19268204-19268223 None:intergenic 30.0%
!!! ATGAAAGTTTTTTCCCATGA+TGG + chr4_3:19268205-19268224 None:intergenic 30.0%
TGTTAAGGTTGCATATCTTA+TGG - chr4_3:19268269-19268288 Msa0633630:intron 30.0%
!! GTATTGACTTTAGATTTGTG+TGG - chr4_3:19268308-19268327 Msa0633630:intron 30.0%
CTTTAGATTTGTGTGGTATA+TGG - chr4_3:19268315-19268334 Msa0633630:intron 30.0%
TGGTATATGGCAAATTATCA+AGG - chr4_3:19268328-19268347 Msa0633630:intron 30.0%
GGTATATGGCAAATTATCAA+GGG - chr4_3:19268329-19268348 Msa0633630:intron 30.0%
TTATAGGGACTAAAAGTTGA+AGG + chr4_3:19268761-19268780 None:intergenic 30.0%
TTATAGGGACTAAAAGTTGA+AGG - chr4_3:19268761-19268780 Msa0633630:intron 30.0%
! GTCTGTGAGTAATTGATAAT+TGG + chr4_3:19268850-19268869 None:intergenic 30.0%
GAAAGTAGATAATAGACCAA+AGG - chr4_3:19268888-19268907 Msa0633630:intron 30.0%
GGCTTTCTATATGTTATAGT+CGG + chr4_3:19269316-19269335 None:intergenic 30.0%
! AATCTAGGATTGATTCTAGA+GGG + chr4_3:19269348-19269367 None:intergenic 30.0%
! TAATCTAGGATTGATTCTAG+AGG + chr4_3:19269349-19269368 None:intergenic 30.0%
ACTATATATGCGGTTCATTA+AGG + chr4_3:19269380-19269399 None:intergenic 30.0%
CACATAGGAAACTATATATG+CGG + chr4_3:19269390-19269409 None:intergenic 30.0%
! TAGTTAAAGTGTTACCACAT+AGG + chr4_3:19269405-19269424 None:intergenic 30.0%
! TTTGGATTGGAATCTACAAT+TGG - chr4_3:19269613-19269632 Msa0633630:intron 30.0%
! TTTTACAAATGTAGCTTCGA+AGG - chr4_3:19269883-19269902 Msa0633630:CDS 30.0%
TACAGAGAATGTAACATCTA+TGG - chr4_3:19269946-19269965 Msa0633630:CDS 30.0%
!!! ATTATTCCAGTGTTTTGGTT+TGG + chr4_3:19270084-19270103 None:intergenic 30.0%
!! GTTCTTGAATATTTTTGCCA+CGG + chr4_3:19270177-19270196 None:intergenic 30.0%
TATGCTGAATATGCTAATAC+AGG - chr4_3:19270285-19270304 Msa0633630:CDS 30.0%
TGAATTTATCAGAATCACAG+TGG - chr4_3:19270478-19270497 Msa0633630:CDS 30.0%
!!! TTTTGGTTTGATGATGAGTG+AGG + chr4_3:19265373-19265392 None:intergenic 35.0%
AACTTAGAGAAGGGTTTATG+AGG + chr4_3:19265396-19265415 None:intergenic 35.0%
TTCAATGGCTTCATTTCCTT+TGG - chr4_3:19265448-19265467 Msa0633630:three_prime_UTR 35.0%
!! AGTTTCACTTGAACTTGCTA+TGG - chr4_3:19265640-19265659 Msa0633630:three_prime_UTR 35.0%
GAAGAAAATACACATGCACT+TGG - chr4_3:19265680-19265699 Msa0633630:exon 35.0%
CACAATATGAATCCCAAACA+TGG - chr4_3:19265807-19265826 Msa0633630:CDS 35.0%
! TAACACCTTGTCACTTAACA+AGG - chr4_3:19265940-19265959 Msa0633630:CDS 35.0%
TTGTAACTTGGTTGTTGGTA+AGG + chr4_3:19265968-19265987 None:intergenic 35.0%
CATCTTTGTAACTTGGTTGT+TGG + chr4_3:19265973-19265992 None:intergenic 35.0%
CAACAACCAAGTTACAAAGA+TGG - chr4_3:19265971-19265990 Msa0633630:CDS 35.0%
GGAAATCCATCTTTGTAACT+TGG + chr4_3:19265980-19265999 None:intergenic 35.0%
! ACAAAGATGGATTTCCAACA+TGG - chr4_3:19265984-19266003 Msa0633630:CDS 35.0%
! CAAAGATGGATTTCCAACAT+GGG - chr4_3:19265985-19266004 Msa0633630:CDS 35.0%
TATGTGATATATGTGAAGGC+TGG - chr4_3:19266145-19266164 Msa0633630:CDS 35.0%
! TTTCTTTTCTTGGTCAAGAC+AGG + chr4_3:19266414-19266433 None:intergenic 35.0%
TACATAGCTTCTCATTCTAG+AGG + chr4_3:19266918-19266937 None:intergenic 35.0%
GAGAAGCTATGTATAACAAC+GGG - chr4_3:19266925-19266944 Msa0633630:intron 35.0%
AGAAGCTATGTATAACAACG+GGG - chr4_3:19266926-19266945 Msa0633630:intron 35.0%
!! TTACTTTTCAGTGAAAGTGG+AGG + chr4_3:19267127-19267146 None:intergenic 35.0%
!! CGATTACTTTTCAGTGAAAG+TGG + chr4_3:19267130-19267149 None:intergenic 35.0%
TAAATTGAGAAGATGGGTAG+GGG + chr4_3:19267154-19267173 None:intergenic 35.0%
CTTAAATTGAGAAGATGGGT+AGG + chr4_3:19267156-19267175 None:intergenic 35.0%
CTCTACCATTTATATATCGC+TGG - chr4_3:19267307-19267326 Msa0633630:intron 35.0%
! CATATTCCGACGAGATTTTT+AGG + chr4_3:19267344-19267363 None:intergenic 35.0%
CTAAAAATCTCGTCGGAATA+TGG - chr4_3:19267342-19267361 Msa0633630:intron 35.0%
CATTGACAGCAAGGAATTAA+AGG + chr4_3:19267380-19267399 None:intergenic 35.0%
! TATTTTCCCGGTGTACAAAA+TGG - chr4_3:19267710-19267729 Msa0633630:intron 35.0%
!!! TTTGTAAGATTTTGGCTGTG+AGG + chr4_3:19267844-19267863 None:intergenic 35.0%
ATTCAGGGGAAAAACAAATG+GGG + chr4_3:19267892-19267911 None:intergenic 35.0%
!! TTCCCCTGAATTTTGAAAGA+AGG - chr4_3:19267901-19267920 Msa0633630:intron 35.0%
AGCCTTCTTTCAAAATTCAG+GGG + chr4_3:19267906-19267925 None:intergenic 35.0%
AAAAGTTTCACACCATTACC+AGG - chr4_3:19268119-19268138 Msa0633630:intron 35.0%
AAGATATGCAACCTTAACAC+CGG + chr4_3:19268268-19268287 None:intergenic 35.0%
!!! TGTTTTTGGGCTCAATTATG+TGG + chr4_3:19269096-19269115 None:intergenic 35.0%
CACATGTATTGTCTTACGTT+TGG - chr4_3:19269232-19269251 Msa0633630:intron 35.0%
ATTGTCTTACGTTTGGCTAT+AGG - chr4_3:19269239-19269258 Msa0633630:intron 35.0%
! ATCTAGGATTGATTCTAGAG+GGG + chr4_3:19269347-19269366 None:intergenic 35.0%
CGCATATATAGTTTCCTATG+TGG - chr4_3:19269388-19269407 Msa0633630:intron 35.0%
TATTAAAGTGGGTCCTACAT+TGG + chr4_3:19269471-19269490 None:intergenic 35.0%
GAGTATTAAAAAACCTAGCG+TGG + chr4_3:19269736-19269755 None:intergenic 35.0%
! ACAATTTTGCAAAACTACCG+CGG + chr4_3:19269998-19270017 None:intergenic 35.0%
AAAGCAAAATTACCATCCCA+TGG + chr4_3:19270252-19270271 None:intergenic 35.0%
! ATGGGATGGTAATTTTGCTT+TGG - chr4_3:19270251-19270270 Msa0633630:CDS 35.0%
GAATATGCTAATACAGGTTC+AGG - chr4_3:19270291-19270310 Msa0633630:CDS 35.0%
AGGTTCATCCACTTCAAATA+GGG - chr4_3:19270311-19270330 Msa0633630:CDS 35.0%
TCAAATAGGGTTACATGGAA+AGG - chr4_3:19270324-19270343 Msa0633630:CDS 35.0%
ATGAAATTTCCAACGGTGAA+AGG + chr4_3:19270384-19270403 None:intergenic 35.0%
ATTTCATTGCCGGTAATTCA+TGG - chr4_3:19270397-19270416 Msa0633630:CDS 35.0%
GTTTCCTATCCATGAATTAC+CGG + chr4_3:19270409-19270428 None:intergenic 35.0%
AATTCATGGATAGGAAACAC+AGG - chr4_3:19270411-19270430 Msa0633630:CDS 35.0%
! GAGAAGGGTTTATGAGGTTT+TGG + chr4_3:19265390-19265409 None:intergenic 40.0%
ACTCACATGGTTGAGGATAA+GGG + chr4_3:19265562-19265581 None:intergenic 40.0%
TACTCACATGGTTGAGGATA+AGG + chr4_3:19265563-19265582 None:intergenic 40.0%
GCTATGGAGAGAGCAAAAAA+AGG - chr4_3:19265656-19265675 Msa0633630:three_prime_UTR 40.0%
AGCTGTACTAAGCCATGTTT+GGG + chr4_3:19265822-19265841 None:intergenic 40.0%
AAGCTGTACTAAGCCATGTT+TGG + chr4_3:19265823-19265842 None:intergenic 40.0%
! AGACATAGTTTGTGACACCA+AGG + chr4_3:19265883-19265902 None:intergenic 40.0%
AGGAACCTTGTTAAGTGACA+AGG + chr4_3:19265948-19265967 None:intergenic 40.0%
! TTTCCAACATGGGTTAAACC+TGG - chr4_3:19265995-19266014 Msa0633630:CDS 40.0%
TGAAGAAGTTTCCTATCACC+AGG + chr4_3:19266016-19266035 None:intergenic 40.0%
ACTTCTTCAAACTTCTTCCG+CGG - chr4_3:19266027-19266046 Msa0633630:CDS 40.0%
AGCAAAGAATGTCATGTTGG+TGG - chr4_3:19266195-19266214 Msa0633630:CDS 40.0%
GCAAAGAATGTCATGTTGGT+GGG - chr4_3:19266196-19266215 Msa0633630:CDS 40.0%
! ATCACTGGTAGCAAAAGTGT+TGG - chr4_3:19266241-19266260 Msa0633630:CDS 40.0%
!!! AAAGGGCATTTTCCCATCAT+GGG + chr4_3:19266983-19267002 None:intergenic 40.0%
!!! AAAAGGGCATTTTCCCATCA+TGG + chr4_3:19266984-19267003 None:intergenic 40.0%
AAATTGAGAAGATGGGTAGG+GGG + chr4_3:19267153-19267172 None:intergenic 40.0%
AATGCTCAACAATGGCAGTT+TGG + chr4_3:19267218-19267237 None:intergenic 40.0%
GCTCAAAGAATGCTCAACAA+TGG + chr4_3:19267226-19267245 None:intergenic 40.0%
TTGTTGAGCATTCTTTGAGC+TGG - chr4_3:19267226-19267245 Msa0633630:intron 40.0%
TGTTGAGCATTCTTTGAGCT+GGG - chr4_3:19267227-19267246 Msa0633630:intron 40.0%
TGGATGAAGAGAACATGGAA+GGG + chr4_3:19267739-19267758 None:intergenic 40.0%
AGTAACTCTTTCACTACTGC+TGG + chr4_3:19267759-19267778 None:intergenic 40.0%
TGGGGGTTTCCTTAAATCAA+AGG + chr4_3:19267874-19267893 None:intergenic 40.0%
TTCAGGGGAAAAACAAATGG+GGG + chr4_3:19267891-19267910 None:intergenic 40.0%
TTGAAAGAAGGCTATTGCGA+TGG - chr4_3:19267913-19267932 Msa0633630:intron 40.0%
CATTACCAGGTAACAGATCT+GGG - chr4_3:19268132-19268151 Msa0633630:intron 40.0%
! GTTATGGTGGGATTTAGCAT+GGG + chr4_3:19268230-19268249 None:intergenic 40.0%
! TGTTATGGTGGGATTTAGCA+TGG + chr4_3:19268231-19268250 None:intergenic 40.0%
GCTAAATCCCACCATAACAA+CGG - chr4_3:19268232-19268251 Msa0633630:intron 40.0%
TTACGTTTGGCTATAGGACA+AGG - chr4_3:19269245-19269264 Msa0633630:intron 40.0%
CACAATTCCACATCCAATGT+AGG - chr4_3:19269455-19269474 Msa0633630:intron 40.0%
! AGTACACACGTCATGCATTT+TGG - chr4_3:19269595-19269614 Msa0633630:intron 40.0%
! ACACGTCATGCATTTTGGAT+TGG - chr4_3:19269600-19269619 Msa0633630:intron 40.0%
!!! TCTTTTTTTGCAGCTGCTAC+TGG - chr4_3:19269763-19269782 Msa0633630:intron 40.0%
ATCACATTCAGAAACACTGC+TGG - chr4_3:19269808-19269827 Msa0633630:intron 40.0%
! GGCACAGTTGATTTCATCTT+TGG - chr4_3:19269967-19269986 Msa0633630:CDS 40.0%
! GTAACTGTGATGGTTTTTGC+AGG + chr4_3:19270042-19270061 None:intergenic 40.0%
ACTGATCCAAACCAAAACAC+TGG - chr4_3:19270075-19270094 Msa0633630:CDS 40.0%
AGGGTTTAAATCCGATTGAG+CGG + chr4_3:19270127-19270146 None:intergenic 40.0%
GGTACGATTTAACAGAGCTA+GGG + chr4_3:19270146-19270165 None:intergenic 40.0%
AGGTACGATTTAACAGAGCT+AGG + chr4_3:19270147-19270166 None:intergenic 40.0%
AGCTCTGTTAAATCGTACCT+TGG - chr4_3:19270147-19270166 Msa0633630:CDS 40.0%
CTGTTAAATCGTACCTTGGT+AGG - chr4_3:19270151-19270170 Msa0633630:CDS 40.0%
!!! GATGGTTTTATTAACCCTGC+TGG - chr4_3:19270219-19270238 Msa0633630:CDS 40.0%
!! GTTTTATTAACCCTGCTGGT+TGG - chr4_3:19270223-19270242 Msa0633630:CDS 40.0%
CAGGTTCATCCACTTCAAAT+AGG - chr4_3:19270310-19270329 Msa0633630:CDS 40.0%
CCATGTAACCCTATTTGAAG+TGG + chr4_3:19270322-19270341 None:intergenic 40.0%
CCACTTCAAATAGGGTTACA+TGG - chr4_3:19270319-19270338 Msa0633630:CDS 40.0%
!! GAGAAGCACTAGTAAGAACA+TGG + chr4_3:19270353-19270372 None:intergenic 40.0%
ACCGTTGGAAATTTCATTGC+CGG - chr4_3:19270387-19270406 Msa0633630:CDS 40.0%
ACCGGCAATGAAATTTCCAA+CGG + chr4_3:19270391-19270410 None:intergenic 40.0%
ATTGCCGGTAATTCATGGAT+AGG - chr4_3:19270402-19270421 Msa0633630:CDS 40.0%
AAGAAACGCTTAAAGTCCAG+AGG + chr4_3:19270448-19270467 None:intergenic 40.0%
CTGGACTTTAAGCGTTTCTT+TGG - chr4_3:19270448-19270467 Msa0633630:CDS 40.0%
ATGGTTGAGGATAAGGGGTT+TGG + chr4_3:19265556-19265575 None:intergenic 45.0%
CTCACATGGTTGAGGATAAG+GGG + chr4_3:19265561-19265580 None:intergenic 45.0%
!! CAGCTTTTTCTTGTGGGCTA+CGG + chr4_3:19265715-19265734 None:intergenic 45.0%
!! CCCAAGCAGCTTTTTCTTGT+GGG + chr4_3:19265721-19265740 None:intergenic 45.0%
CCCACAAGAAAAAGCTGCTT+GGG - chr4_3:19265718-19265737 Msa0633630:CDS 45.0%
TCACCAGGTTTAACCCATGT+TGG + chr4_3:19266001-19266020 None:intergenic 45.0%
! CATGGGTTAAACCTGGTGAT+AGG - chr4_3:19266002-19266021 Msa0633630:CDS 45.0%
AATGTCGTCGTTGCTAAGGA+TGG - chr4_3:19266061-19266080 Msa0633630:CDS 45.0%
ACATACCTTCCACTACCACT+TGG + chr4_3:19266130-19266149 None:intergenic 45.0%
! AATGTCATGTTGGTGGGTGA+TGG - chr4_3:19266202-19266221 Msa0633630:CDS 45.0%
! ATGTTGGTGGGTGATGGTAT+TGG - chr4_3:19266208-19266227 Msa0633630:CDS 45.0%
!! ACTGGTAGCAAAAGTGTTGG+AGG - chr4_3:19266244-19266263 Msa0633630:CDS 45.0%
ACTTACCAACGGTTGCTGAA+CGG + chr4_3:19266285-19266304 None:intergenic 45.0%
GTGAGATTTAGCCTGGGAAA+GGG - chr4_3:19266948-19266967 Msa0633630:intron 45.0%
! AGGGAACTTGTTTCCCATGA+TGG - chr4_3:19266967-19266986 Msa0633630:intron 45.0%
! GGGAACTTGTTTCCCATGAT+GGG - chr4_3:19266968-19266987 Msa0633630:intron 45.0%
ATGTCATGCCCTCACTTCAT+TGG + chr4_3:19267285-19267304 None:intergenic 45.0%
CAGAAGAGTCATTGACAGCA+AGG + chr4_3:19267389-19267408 None:intergenic 45.0%
! CTTGCTGTCAATGACTCTTC+TGG - chr4_3:19267387-19267406 Msa0633630:intron 45.0%
!!! AGGGTTGCCATTTTGTACAC+CGG + chr4_3:19267720-19267739 None:intergenic 45.0%
CTGGATGAAGAGAACATGGA+AGG + chr4_3:19267740-19267759 None:intergenic 45.0%
ACTGCTGGATGAAGAGAACA+TGG + chr4_3:19267744-19267763 None:intergenic 45.0%
AGCGACTATTAGCATGTTGC+TGG - chr4_3:19267966-19267985 Msa0633630:intron 45.0%
GGAAGAAGAAGAAGAAGCAG+CGG - chr4_3:19267987-19268006 Msa0633630:intron 45.0%
CCAGATCTGTTACCTGGTAA+TGG + chr4_3:19268134-19268153 None:intergenic 45.0%
CCATTACCAGGTAACAGATC+TGG - chr4_3:19268131-19268150 Msa0633630:intron 45.0%
AGAAGGACCGTTGTTATGGT+GGG + chr4_3:19268242-19268261 None:intergenic 45.0%
ACCATAACAACGGTCCTTCT+CGG - chr4_3:19268242-19268261 Msa0633630:intron 45.0%
! GATTCTAGAGGGGAAAGATG+TGG + chr4_3:19269337-19269356 None:intergenic 45.0%
CAAGCTGTTGCATTTCGTTC+CGG - chr4_3:19269844-19269863 Msa0633630:intron 45.0%
AAATACCGATAGATCGGAGC+CGG + chr4_3:19269866-19269885 None:intergenic 45.0%
!! TTTCATCTTTGGTAACGCCG+CGG - chr4_3:19269978-19269997 Msa0633630:CDS 45.0%
! ACTGTGATGGTTTTTGCAGG+CGG + chr4_3:19270039-19270058 None:intergenic 45.0%
!! TTCTAGGGTTTCCGCTCAAT+CGG - chr4_3:19270113-19270132 Msa0633630:CDS 45.0%
GCTTAAAGTCCAGAGGTGAA+TGG + chr4_3:19270441-19270460 None:intergenic 45.0%
!! ATAAAAAATTATTAAATCAA+TGG - chr4_3:19268163-19268182 Msa0633630:intron 5.0%
!!! AAAAAATTCTAAAAAATTTT+TGG + chr4_3:19268548-19268567 None:intergenic 5.0%
!! ACAAAAATTAAATTAAAAAT+AGG - chr4_3:19268714-19268733 Msa0633630:intron 5.0%
!! CAAAAATTAAATTAAAAATA+GGG - chr4_3:19268715-19268734 Msa0633630:intron 5.0%
GCCCACAAGAAAAAGCTGCT+TGG - chr4_3:19265717-19265736 Msa0633630:CDS 50.0%
!! GCCCAAGCAGCTTTTTCTTG+TGG + chr4_3:19265722-19265741 None:intergenic 50.0%
GGCTAATGTCGTCGTTGCTA+AGG - chr4_3:19266057-19266076 Msa0633630:CDS 50.0%
CGTCGTTGCTAAGGATGGTT+CGG - chr4_3:19266066-19266085 Msa0633630:CDS 50.0%
GTCGTTGCTAAGGATGGTTC+GGG - chr4_3:19266067-19266086 Msa0633630:CDS 50.0%
!! GGTAGCAAAAGTGTTGGAGG+TGG - chr4_3:19266247-19266266 Msa0633630:CDS 50.0%
GGTTGCTGAACGGAAAGTAG+TGG + chr4_3:19266275-19266294 None:intergenic 50.0%
ACTTTCCGTTCAGCAACCGT+TGG - chr4_3:19266277-19266296 Msa0633630:CDS 50.0%
AACGGGGTGAGATTTAGCCT+GGG - chr4_3:19266942-19266961 Msa0633630:intron 50.0%
GGTGAGATTTAGCCTGGGAA+AGG - chr4_3:19266947-19266966 Msa0633630:intron 50.0%
GGAAACAAGTTCCCTTTCCC+AGG + chr4_3:19266962-19266981 None:intergenic 50.0%
! ATGCCCTTTTTACTGCCAGC+TGG - chr4_3:19266994-19267013 Msa0633630:intron 50.0%
CTGCCAGCTGGCAGTAAAAA+GGG + chr4_3:19267000-19267019 None:intergenic 50.0%
ACTGCCAGCTGGCAGTAAAA+AGG + chr4_3:19267001-19267020 None:intergenic 50.0%
TCTCGTCGGAATATGGCTCT+TGG - chr4_3:19267349-19267368 Msa0633630:intron 50.0%
!!! GGGTTGCCATTTTGTACACC+GGG + chr4_3:19267719-19267738 None:intergenic 50.0%
CTGTGAGGATTCATGTGTGG+GGG + chr4_3:19267829-19267848 None:intergenic 50.0%
GCTGTGAGGATTCATGTGTG+GGG + chr4_3:19267830-19267849 None:intergenic 50.0%
GGCTGTGAGGATTCATGTGT+GGG + chr4_3:19267831-19267850 None:intergenic 50.0%
TGGCTGTGAGGATTCATGTG+TGG + chr4_3:19267832-19267851 None:intergenic 50.0%
GAGAAGGACCGTTGTTATGG+TGG + chr4_3:19268243-19268262 None:intergenic 50.0%
AGTGGGTCCTACATTGGATG+TGG + chr4_3:19269465-19269484 None:intergenic 50.0%
AATTGCTTGTGCTCCACGCT+AGG - chr4_3:19269720-19269739 Msa0633630:intron 50.0%
TTTGCAGCTGCTACTGGTGA+TGG - chr4_3:19269769-19269788 Msa0633630:intron 50.0%
! CTGTGATGGTTTTTGCAGGC+GGG + chr4_3:19270038-19270057 None:intergenic 50.0%
TGGATCAGTTCTTCCTTGCG+CGG + chr4_3:19270064-19270083 None:intergenic 50.0%
! ATTTTTGCCACGGCCTACCA+AGG + chr4_3:19270167-19270186 None:intergenic 50.0%
CAAGCTTCACCTTTCACCGT+TGG - chr4_3:19270372-19270391 Msa0633630:CDS 50.0%
! CTTGTGGGCTACGGCACTTA+GGG + chr4_3:19265706-19265725 None:intergenic 55.0%
! TCTTGTGGGCTACGGCACTT+AGG + chr4_3:19265707-19265726 None:intergenic 55.0%
AACTTCTTCCGCGGCTTCGA+AGG - chr4_3:19266036-19266055 Msa0633630:CDS 55.0%
!! GACATTAGCCTTCGAAGCCG+CGG + chr4_3:19266047-19266066 None:intergenic 55.0%
! TGGTTCGGGCAAGTACACGA+CGG - chr4_3:19266081-19266100 Msa0633630:CDS 55.0%
GATGCTGCACCAAGTGGTAG+TGG - chr4_3:19266118-19266137 Msa0633630:CDS 55.0%
!! CTGCACCAAGTGGTAGTGGA+AGG - chr4_3:19266122-19266141 Msa0633630:CDS 55.0%
CAACGGGGTGAGATTTAGCC+TGG - chr4_3:19266941-19266960 Msa0633630:intron 55.0%
! TGCCAGCTGGCAGTTTGTTC+CGG - chr4_3:19267007-19267026 Msa0633630:intron 55.0%
AACCGGAACAAACTGCCAGC+TGG + chr4_3:19267012-19267031 None:intergenic 55.0%
AAGAAGAAGCAGCGGCAGCA+AGG - chr4_3:19267995-19268014 Msa0633630:intron 55.0%
GATGGCCCAGATCTGTTACC+TGG + chr4_3:19268140-19268159 None:intergenic 55.0%
GCCGAGAAGGACCGTTGTTA+TGG + chr4_3:19268246-19268265 None:intergenic 55.0%
TAACAACGGTCCTTCTCGGC+CGG - chr4_3:19268246-19268265 Msa0633630:intron 55.0%
AACCTTAACACCGGCCGAGA+AGG + chr4_3:19268259-19268278 None:intergenic 55.0%
TCGTTCCGGCTCCGATCTAT+CGG - chr4_3:19269858-19269877 Msa0633630:intron 55.0%
ACCATCACAGTTACCGCGCA+AGG - chr4_3:19270048-19270067 Msa0633630:CDS 55.0%
TCCTTGCGCGGTAACTGTGA+TGG + chr4_3:19270052-19270071 None:intergenic 55.0%
AATCGTACCTTGGTAGGCCG+TGG - chr4_3:19270157-19270176 Msa0633630:CDS 55.0%
! ACCCTGCTGGTTGGTTACCA+TGG - chr4_3:19270232-19270251 Msa0633630:CDS 55.0%
CCCATGGTAACCAACCAGCA+GGG + chr4_3:19270236-19270255 None:intergenic 55.0%
! CCCTGCTGGTTGGTTACCAT+GGG - chr4_3:19270233-19270252 Msa0633630:CDS 55.0%
TCCCATGGTAACCAACCAGC+AGG + chr4_3:19270237-19270256 None:intergenic 55.0%
! GCTGGTTGGTTACCATGGGA+TGG - chr4_3:19270237-19270256 Msa0633630:CDS 55.0%
GGGCAAGTACACGACGGTGA+AGG - chr4_3:19266087-19266106 Msa0633630:CDS 60.0%
!! ACTTGGTGCAGCATCCGTCG+CGG + chr4_3:19266113-19266132 None:intergenic 60.0%
GAAGCAGCGGCAGCAAGGTT+TGG - chr4_3:19268000-19268019 Msa0633630:intron 60.0%
! GTCCTTCTCGGCCGGTGTTA+AGG - chr4_3:19268254-19268273 Msa0633630:intron 60.0%
! ACAGGCGTGCCATTCACCTC+TGG - chr4_3:19270429-19270448 Msa0633630:CDS 60.0%
GCGACGGATGCTGCACCAAG+TGG - chr4_3:19266112-19266131 Msa0633630:CDS 65.0%
CACGACGGTGAAGGCCGCGA+CGG - chr4_3:19266096-19266115 Msa0633630:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 19265351 19270806 19265351 ID=Msa0633630;Name=Msa0633630
chr4_3 mRNA 19265351 19270806 19265351 ID=Msa0633630-mRNA-1;Parent=Msa0633630;Name=Msa0633630-mRNA-1;_AED=0.00;_eAED=0.00;_QI=101|1|1|1|1|1|2|348|509
chr4_3 exon 19265351 19266381 19265351 ID=Msa0633630-mRNA-1:exon:5246;Parent=Msa0633630-mRNA-1
chr4_3 exon 19269859 19270806 19269859 ID=Msa0633630-mRNA-1:exon:5245;Parent=Msa0633630-mRNA-1
chr4_3 five_prime_UTR 19270706 19270806 19270706 ID=Msa0633630-mRNA-1:five_prime_utr;Parent=Msa0633630-mRNA-1
chr4_3 CDS 19269859 19270705 19269859 ID=Msa0633630-mRNA-1:cds;Parent=Msa0633630-mRNA-1
chr4_3 CDS 19265699 19266381 19265699 ID=Msa0633630-mRNA-1:cds;Parent=Msa0633630-mRNA-1
chr4_3 three_prime_UTR 19265351 19265698 19265351 ID=Msa0633630-mRNA-1:three_prime_utr;Parent=Msa0633630-mRNA-1
Gene Sequence

>Msa0633630

ATGGCTTCATTTCCTTTGGTAACAACTCTTTTAATATTTCCATTTCTTTTCTCCACTATTGTTTATGGTTACTCATTAAGTTCCATAAAATCATGGTGTAACCAAACCCCTTATCCTCAACCATGTGAGTATTATTTAACCAATAATGCTTTCAATCAAACCATAAAAAATAAATCCGATTTTTTCAAAGTTTCACTTGAACTTGCTATGGAGAGAGCAAAAAAAGGTGAAGAAAATACACATGCACTTGGCCCTAAGTGCCGTAGCCCACAAGAAAAAGCTGCTTGGGCAGATTGTCTTGAACTCTATGATTTCACAGTCCAAAAGCTTAGCCAAACAAAATACACAAAGTGCACACAATATGAATCCCAAACATGGCTTAGTACAGCTTTAACAAACCTTGAAACATGCAAAAATGGATTTTATGACCTTGGTGTCACAAACTATGTCTTACCCTTGTTGTCCAATAATGTAACAAAGTTGTTAAGTAACACCTTGTCACTTAACAAGGTTCCTTACCAACAACCAAGTTACAAAGATGGATTTCCAACATGGGTTAAACCTGGTGATAGGAAACTTCTTCAAACTTCTTCCGCGGCTTCGAAGGCTAATGTCGTCGTTGCTAAGGATGGTTCGGGCAAGTACACGACGGTGAAGGCCGCGACGGATGCTGCACCAAGTGGTAGTGGAAGGTATGTGATATATGTGAAGGCTGGTGTGTATAATGAACAAGTTGAGATTAAAGCAAAGAATGTCATGTTGGTGGGTGATGGTATTGGTAAAACTATAATCACTGGTAGCAAAAGTGTTGGAGGTGGCACCACTACTTTCCGTTCAGCAACCGTTGCTGCTACTGGTGATGGATTTATTGCTCAAGACATCACATTCAGAAACACTGCTGGAGCTGCAAATCATCAAGCTGTTGCATTTCGTTCCGGCTCCGATCTATCGGTATTTTACAAATGTAGCTTCGAAGGTTATCAAGACACACTTTATGTTCACTCAGAGAGACAATTTTACAGAGAATGTAACATCTATGGCACAGTTGATTTCATCTTTGGTAACGCCGCGGTAGTTTTGCAAAATTGTAACATTTTTGCAAGAAACCCGCCTGCAAAAACCATCACAGTTACCGCGCAAGGAAGAACTGATCCAAACCAAAACACTGGAATAATAATTCATAATTCTAGGGTTTCCGCTCAATCGGATTTAAACCCTAGCTCTGTTAAATCGTACCTTGGTAGGCCGTGGCAAAAATATTCAAGAACAGTTTTCATGAAAACTGTTATTGATGGTTTTATTAACCCTGCTGGTTGGTTACCATGGGATGGTAATTTTGCTTTGGATACTTTATATTATGCTGAATATGCTAATACAGGTTCAGGTTCATCCACTTCAAATAGGGTTACATGGAAAGGTTACCATGTTCTTACTAGTGCTTCTCAAGCTTCACCTTTCACCGTTGGAAATTTCATTGCCGGTAATTCATGGATAGGAAACACAGGCGTGCCATTCACCTCTGGACTTTAA
Protein sequence

>Msa0633630

MASFPLVTTLLIFPFLFSTIVYGYSLSSIKSWCNQTPYPQPCEYYLTNNAFNQTIKNKSDFFKVSLELAMERAKKGEENTHALGPKCRSPQEKAAWADCLELYDFTVQKLSQTKYTKCTQYESQTWLSTALTNLETCKNGFYDLGVTNYVLPLLSNNVTKLLSNTLSLNKVPYQQPSYKDGFPTWVKPGDRKLLQTSSAASKANVVVAKDGSGKYTTVKAATDAAPSGSGRYVIYVKAGVYNEQVEIKAKNVMLVGDGIGKTIITGSKSVGGGTTTFRSATVAATGDGFIAQDITFRNTAGAANHQAVAFRSGSDLSVFYKCSFEGYQDTLYVHSERQFYRECNIYGTVDFIFGNAAVVLQNCNIFARNPPAKTITVTAQGRTDPNQNTGIIIHNSRVSAQSDLNPSSVKSYLGRPWQKYSRTVFMKTVIDGFINPAGWLPWDGNFALDTLYYAEYANTGSGSSTSNRVTWKGYHVLTSASQASPFTVGNFIAGNSWIGNTGVPFTSGL*