Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0055030 | XP_013465813.1 | 98.889 | 360 | 4 | 0 | 1 | 360 | 1 | 360 | 0.0 | 742 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0055030 | sp|Q8W4E6|HPAT1_ARATH | 81.421 | 366 | 62 | 3 | 1 | 360 | 1 | 366 | 0.0 | 602 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0055030 | A0A072VCX6 | 98.889 | 360 | 4 | 0 | 1 | 360 | 1 | 360 | 0.0 | 742 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011060 | Msa0055030 | -0.806344 | 8.608214e-50 | -8.615850e-47 |
| Msa0011100 | Msa0055030 | -0.800486 | 1.409183e-48 | -8.615850e-47 |
| Msa0030050 | Msa0055030 | 0.818359 | 2.043097e-52 | -8.615850e-47 |
| Msa0055030 | Msa0081700 | -0.843870 | 1.073615e-58 | -8.615850e-47 |
| Msa0055030 | Msa0099090 | -0.807353 | 5.267607e-50 | -8.615850e-47 |
| Msa0055030 | Msa0099350 | -0.821102 | 4.826986e-53 | -8.615850e-47 |
| Msa0055030 | Msa0099430 | -0.823074 | 1.684528e-53 | -8.615850e-47 |
| Msa0055030 | Msa0127910 | -0.824647 | 7.206702e-54 | -8.615850e-47 |
| Msa0055030 | Msa0132870 | 0.801073 | 1.069497e-48 | -8.615850e-47 |
| Msa0055030 | Msa0148000 | -0.828409 | 9.135783e-55 | -8.615850e-47 |
| Msa0055030 | Msa0174060 | -0.840089 | 1.072433e-57 | -8.615850e-47 |
| Msa0055030 | Msa0195030 | 0.803934 | 2.750291e-49 | -8.615850e-47 |
| Msa0055030 | Msa0214800 | 0.846634 | 1.919788e-59 | -8.615850e-47 |
| Msa0055030 | Msa0223590 | 0.802111 | 6.551789e-49 | -8.615850e-47 |
| Msa0055030 | Msa0225070 | -0.808055 | 3.737492e-50 | -8.615850e-47 |
| Msa0055030 | Msa0242720 | 0.837170 | 6.087642e-57 | -8.615850e-47 |
| Msa0055030 | Msa0281000 | 0.813239 | 2.830822e-51 | -8.615850e-47 |
| Msa0055030 | Msa0294200 | 0.814605 | 1.414798e-51 | -8.615850e-47 |
| Msa0055030 | Msa0307430 | 0.815823 | 7.586815e-52 | -8.615850e-47 |
| Msa0055030 | Msa0315660 | 0.801379 | 9.259773e-49 | -8.615850e-47 |
| Msa0055030 | Msa0336680 | 0.813759 | 2.175177e-51 | -8.615850e-47 |
| Msa0055030 | Msa0340270 | 0.800447 | 1.435411e-48 | -8.615850e-47 |
| Msa0055030 | Msa0373550 | 0.812832 | 3.476209e-51 | -8.615850e-47 |
| Msa0055030 | Msa0390590 | -0.826330 | 2.878791e-54 | -8.615850e-47 |
| Msa0055030 | Msa0468660 | 0.826642 | 2.425267e-54 | -8.615850e-47 |
| Msa0055030 | Msa0502900 | -0.820315 | 7.320631e-53 | -8.615850e-47 |
| Msa0055030 | Msa0538050 | -0.840851 | 6.777259e-58 | -8.615850e-47 |
| Msa0055030 | Msa0545750 | -0.814433 | 1.544670e-51 | -8.615850e-47 |
| Msa0055030 | Msa0546880 | 0.825710 | 4.041100e-54 | -8.615850e-47 |
| Msa0055030 | Msa0549550 | -0.801046 | 1.082965e-48 | -8.615850e-47 |
| Msa0055030 | Msa0559440 | -0.823270 | 1.515733e-53 | -8.615850e-47 |
| Msa0055030 | Msa0559640 | -0.806061 | 9.875003e-50 | -8.615850e-47 |
| Msa0055030 | Msa0563440 | 0.803977 | 2.694498e-49 | -8.615850e-47 |
| Msa0055030 | Msa0571900 | -0.809075 | 2.263328e-50 | -8.615850e-47 |
| Msa0055030 | Msa0588880 | 0.829440 | 5.141441e-55 | -8.615850e-47 |
| Msa0055030 | Msa0593600 | 0.800176 | 1.629333e-48 | -8.615850e-47 |
| Msa0055030 | Msa0604890 | -0.812013 | 5.249333e-51 | -8.615850e-47 |
| Msa0055030 | Msa0619300 | 0.815895 | 7.312176e-52 | -8.615850e-47 |
| Msa0055030 | Msa0646180 | -0.821277 | 4.398716e-53 | -8.615850e-47 |
| Msa0055030 | Msa0654400 | -0.803556 | 3.294336e-49 | -8.615850e-47 |
| Msa0055030 | Msa0686810 | 0.817434 | 3.305124e-52 | -8.615850e-47 |
| Msa0055030 | Msa0690100 | -0.809172 | 2.157637e-50 | -8.615850e-47 |
| Msa0055030 | Msa0704690 | 0.810984 | 8.780545e-51 | -8.615850e-47 |
| Msa0055030 | Msa0733240 | -0.800209 | 1.604849e-48 | -8.615850e-47 |
| Msa0055030 | Msa0779830 | -0.809968 | 1.455488e-50 | -8.615850e-47 |
| Msa0055030 | Msa0815650 | 0.830179 | 3.398133e-55 | -8.615850e-47 |
| Msa0055030 | Msa0826370 | 0.819892 | 9.150168e-53 | -8.615850e-47 |
| Msa0055030 | Msa0826380 | 0.824524 | 7.704554e-54 | -8.615850e-47 |
| Msa0055030 | Msa0826450 | 0.816359 | 5.759864e-52 | -8.615850e-47 |
| Msa0055030 | Msa0869320 | -0.810279 | 1.247299e-50 | -8.615850e-47 |
| Msa0055030 | Msa0870220 | -0.823385 | 1.425110e-53 | -8.615850e-47 |
| Msa0055030 | Msa0903460 | -0.838420 | 2.906745e-57 | -8.615850e-47 |
| Msa0055030 | Msa0906100 | -0.835461 | 1.655726e-56 | -8.615850e-47 |
| Msa0055030 | Msa0924690 | -0.800344 | 1.506243e-48 | -8.615850e-47 |
| Msa0055030 | Msa0934290 | -0.831531 | 1.583288e-55 | -8.615850e-47 |
| Msa0055030 | Msa0935930 | -0.827242 | 1.742853e-54 | -8.615850e-47 |
| Msa0055030 | Msa0938150 | -0.800575 | 1.351633e-48 | -8.615850e-47 |
| Msa0055030 | Msa0947420 | 0.800249 | 1.574441e-48 | -8.615850e-47 |
| Msa0055030 | Msa0971780 | -0.832307 | 1.018563e-55 | -8.615850e-47 |
| Msa0055030 | Msa0972930 | -0.813057 | 3.103405e-51 | -8.615850e-47 |
| Msa0055030 | Msa1016580 | -0.803370 | 3.600732e-49 | -8.615850e-47 |
| Msa0055030 | Msa1018210 | -0.836357 | 9.812062e-57 | -8.615850e-47 |
| Msa0055030 | Msa1039150 | -0.812720 | 3.678296e-51 | -8.615850e-47 |
| Msa0055030 | Msa1049810 | 0.805488 | 1.303202e-49 | -8.615850e-47 |
| Msa0055030 | Msa1055520 | -0.808396 | 3.161754e-50 | -8.615850e-47 |
| Msa0055030 | Msa1093190 | -0.818522 | 1.875961e-52 | -8.615850e-47 |
| Msa0055030 | Msa1104020 | -0.810710 | 1.006767e-50 | -8.615850e-47 |
| Msa0055030 | Msa1179340 | 0.808446 | 3.085310e-50 | -8.615850e-47 |
| Msa0055030 | Msa1275220 | 0.801104 | 1.054134e-48 | -8.615850e-47 |
| Msa0055030 | Msa1299220 | 0.813029 | 3.148115e-51 | -8.615850e-47 |
| Msa0055030 | Msa1313720 | 0.801530 | 8.621375e-49 | -8.615850e-47 |
| Msa0055030 | Msa1359880 | -0.822641 | 2.124433e-53 | -8.615850e-47 |
| Msa0055030 | Msa1369220 | -0.801789 | 7.628014e-49 | -8.615850e-47 |
| Msa0055030 | Msa1381300 | -0.807299 | 5.408703e-50 | -8.615850e-47 |
| Msa0055030 | Msa1384410 | -0.820983 | 5.139732e-53 | -8.615850e-47 |
| Msa0055030 | Msa1459920 | 0.808084 | 3.684007e-50 | -8.615850e-47 |
| Msa0055030 | Msa1464470 | -0.802292 | 6.010908e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0055030 | MtrunA17_Chr1g0149621 | 98.889 | 360 | 4 | 0 | 1 | 360 | 1 | 360 | 0.0 | 742 |
| Msa0055030 | MtrunA17_Chr5g0441831 | 61.219 | 361 | 125 | 4 | 1 | 360 | 7 | 353 | 1.68e-162 | 459 |
| Msa0055030 | MtrunA17_Chr8g0353191 | 62.842 | 366 | 123 | 5 | 1 | 360 | 1 | 359 | 8.39e-161 | 454 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0055030 | AT5G25265.1 | 81.421 | 366 | 62 | 3 | 1 | 360 | 1 | 366 | 0.0 | 602 |
| Msa0055030 | AT2G25260.1 | 72.702 | 359 | 91 | 5 | 4 | 360 | 5 | 358 | 0.0 | 530 |
| Msa0055030 | AT5G13500.2 | 71.924 | 317 | 85 | 3 | 46 | 360 | 43 | 357 | 2.68e-172 | 484 |
| Msa0055030 | AT5G13500.3 | 71.924 | 317 | 85 | 3 | 46 | 360 | 43 | 357 | 2.68e-172 | 484 |
| Msa0055030 | AT5G13500.1 | 71.924 | 317 | 85 | 3 | 46 | 360 | 43 | 357 | 2.68e-172 | 484 |
| Msa0055030 | AT3G01720.1 | 24.150 | 294 | 186 | 10 | 65 | 341 | 394 | 667 | 1.69e-12 | 69.3 |
Find 112 sgRNAs with CRISPR-Local
Find 366 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAAAGCTTTATCGGTTTC+AGG | 0.147915 | 1_2:-9827525 | None:intergenic |
| TTCATAATTCACTACACTTA+TGG | 0.167165 | 1_2:+9829013 | Msa0055030:CDS |
| ATGAAACATACCACACTTTC+TGG | 0.188552 | 1_2:-9829255 | None:intergenic |
| CTAGGTGACTCTAGTGAAAA+TGG | 0.224137 | 1_2:+9830367 | Msa0055030:intron |
| GTTGCTCAACCTTTGCCTTC+TGG | 0.227974 | 1_2:+9825854 | Msa0055030:CDS |
| GCCGTTTCGTCTGCTCTTCA+TGG | 0.235074 | 1_2:+9827660 | Msa0055030:CDS |
| GACGAGTTTACGTTCAAATT+TGG | 0.238984 | 1_2:+9830661 | Msa0055030:three_prime_UTR |
| TGGTGTGAAACATATTTCTA+AGG | 0.243602 | 1_2:-9830767 | None:intergenic |
| CCTGAAACCGATAAAGCTTT+TGG | 0.263522 | 1_2:+9827525 | Msa0055030:CDS |
| CACCCATCCAAAAGCTTTAT+CGG | 0.266241 | 1_2:-9827532 | None:intergenic |
| GAAGAAGTTGGTGAATTATT+AGG | 0.281680 | 1_2:-9825405 | None:intergenic |
| AAAATTTCAATATGGTGTTT+TGG | 0.283080 | 1_2:-9830604 | None:intergenic |
| TATCTCGTTGGTGTTGAAAA+AGG | 0.286151 | 1_2:-9825353 | None:intergenic |
| ATTGGATCTATATTGGTTAC+AGG | 0.301550 | 1_2:-9827181 | None:intergenic |
| TTAAGTGGCATCTTGATTAC+TGG | 0.305393 | 1_2:-9825626 | None:intergenic |
| ACACAAGGACTTCATGATTC+AGG | 0.308069 | 1_2:+9827698 | Msa0055030:CDS |
| ATTCCCAATTGGATCTATAT+TGG | 0.312594 | 1_2:-9827188 | None:intergenic |
| TGTTGGAGCAATCTTCTTAA+GGG | 0.314451 | 1_2:-9827469 | None:intergenic |
| AGTGTAGAGTTATGTATTAT+TGG | 0.315997 | 1_2:+9825723 | Msa0055030:CDS |
| TATTCCAAACTGGTCATCAT+AGG | 0.322270 | 1_2:+9830409 | Msa0055030:CDS |
| ATGTTACTGAGAATGTTATT+AGG | 0.323674 | 1_2:-9825514 | None:intergenic |
| AGCACTTTCTCATATTTCTT+AGG | 0.325931 | 1_2:-9827130 | None:intergenic |
| TTATAATGATTGTTGTAGTT+AGG | 0.334802 | 1_2:+9830636 | Msa0055030:three_prime_UTR |
| TGGTAAAACTGATCAGTATA+TGG | 0.343547 | 1_2:+9825814 | Msa0055030:CDS |
| TCATAATTCACTACACTTAT+GGG | 0.346462 | 1_2:+9829014 | Msa0055030:CDS |
| TATAATGATTGTTGTAGTTA+GGG | 0.356058 | 1_2:+9830637 | Msa0055030:three_prime_UTR |
| ATAATAGATCGGTACCTTCA+TGG | 0.360692 | 1_2:-9829047 | None:intergenic |
| ATGTTGGAGCAATCTTCTTA+AGG | 0.368822 | 1_2:-9827470 | None:intergenic |
| GATACCTTGCCAACAATTAC+AGG | 0.376521 | 1_2:-9827214 | None:intergenic |
| CATTCCATCTCTGGCTAAGT+TGG | 0.377427 | 1_2:-9827077 | None:intergenic |
| CTGGTATGGGTGGATTTACT+AGG | 0.390112 | 1_2:+9825780 | Msa0055030:CDS |
| GAAAGTGGTGATGACAATTC+TGG | 0.391728 | 1_2:+9825761 | Msa0055030:CDS |
| CTGATTCTGTTTACAATACA+TGG | 0.406387 | 1_2:+9825699 | Msa0055030:CDS |
| AAGCCCTATGATGACCAGTT+TGG | 0.412238 | 1_2:-9830413 | None:intergenic |
| TTTGCCTTCTGGAATGGATC+AGG | 0.414709 | 1_2:+9825865 | Msa0055030:CDS |
| GGGAATTCACCTGTAATTGT+TGG | 0.416734 | 1_2:+9827205 | Msa0055030:CDS |
| TGCAGCTCCCATTCCATCTC+TGG | 0.432516 | 1_2:-9827086 | None:intergenic |
| TCAACCTTTGCCTTCTGGAA+TGG | 0.434673 | 1_2:+9825859 | Msa0055030:CDS |
| TCTCTGGCTAAGTTGGGTAT+AGG | 0.438539 | 1_2:-9827070 | None:intergenic |
| GTAACCAATATAGATCCAAT+TGG | 0.439770 | 1_2:+9827184 | Msa0055030:CDS |
| GTTACAGGTCCATTCTCCTC+GGG | 0.450284 | 1_2:-9827166 | None:intergenic |
| TCGTCTGCTCTTCATGGTGT+TGG | 0.457117 | 1_2:+9827666 | Msa0055030:CDS |
| ATTCCATCTCTGGCTAAGTT+GGG | 0.459075 | 1_2:-9827076 | None:intergenic |
| ATTACAGGTGAATTCCCAAT+TGG | 0.460766 | 1_2:-9827199 | None:intergenic |
| AACATGGATGAATGTTTCCT+TGG | 0.468333 | 1_2:+9827488 | Msa0055030:CDS |
| TTAGGCTCGATATAAAAGAA+AGG | 0.471498 | 1_2:-9827112 | None:intergenic |
| CCACCATGGGACAAAGAACT+TGG | 0.473823 | 1_2:+9828983 | Msa0055030:CDS |
| AATCAGGGTGAACTGACATA+TGG | 0.476030 | 1_2:+9829150 | Msa0055030:intron |
| AAAGGTTGAGCAACAAAAGT+AGG | 0.477238 | 1_2:-9825845 | None:intergenic |
| TGTTTCCTTGGCAATGAAGA+AGG | 0.478316 | 1_2:+9827500 | Msa0055030:CDS |
| TTGCCAAGTTCTTTGTCCCA+TGG | 0.483106 | 1_2:-9828986 | None:intergenic |
| GGTTTCACAATGATATGATC+TGG | 0.489542 | 1_2:-9827049 | None:intergenic |
| AAGTACTACCCCGAGGAGAA+TGG | 0.491483 | 1_2:+9827157 | Msa0055030:CDS |
| CCGCAGCAAATATTCCAAAC+TGG | 0.497250 | 1_2:+9830399 | Msa0055030:CDS |
| CAACTTAGCCAGAGATGGAA+TGG | 0.497539 | 1_2:+9827078 | Msa0055030:CDS |
| TAACCAATATAGATCCAATT+GGG | 0.497652 | 1_2:+9827185 | Msa0055030:CDS |
| TACGTTCAAATTTGGTACCT+CGG | 0.504706 | 1_2:+9830669 | Msa0055030:three_prime_UTR |
| ACATACAACATCATTATCTC+AGG | 0.505441 | 1_2:+9825542 | Msa0055030:CDS |
| GGTTACAGGTCCATTCTCCT+CGG | 0.510880 | 1_2:-9827167 | None:intergenic |
| TGGTGATGACAATTCTGGTA+TGG | 0.520121 | 1_2:+9825766 | Msa0055030:CDS |
| AACTTAGCCAGAGATGGAAT+GGG | 0.520799 | 1_2:+9827079 | Msa0055030:CDS |
| GTCATCATAGGGCTTTCTAC+AGG | 0.521846 | 1_2:+9830421 | Msa0055030:exon |
| TTCACCTGTAATTGTTGGCA+AGG | 0.523630 | 1_2:+9827210 | Msa0055030:CDS |
| TAGGCTCGATATAAAAGAAA+GGG | 0.524947 | 1_2:-9827111 | None:intergenic |
| TTATTAGGCGGCTATATGAA+AGG | 0.527083 | 1_2:-9825390 | None:intergenic |
| TATTAGGCGGCTATATGAAA+GGG | 0.529546 | 1_2:-9825389 | None:intergenic |
| CATTGTTCTTAATAGACCAT+GGG | 0.529987 | 1_2:+9826880 | Msa0055030:CDS |
| TTTATTGATGGTTTACGTGA+AGG | 0.530199 | 1_2:-9825596 | None:intergenic |
| GCGTGCCATTTGTCACAGAT+TGG | 0.533569 | 1_2:+9830474 | Msa0055030:three_prime_UTR |
| CCAGGAAAATCTTGTCTCAA+AGG | 0.533851 | 1_2:-9825572 | None:intergenic |
| ACCATGAAGAGCAGACGAAA+CGG | 0.535360 | 1_2:-9827661 | None:intergenic |
| TAAGTGGCATCTTGATTACT+GGG | 0.536185 | 1_2:-9825625 | None:intergenic |
| AGGATCCTTCTTCATTGCCA+AGG | 0.541651 | 1_2:-9827505 | None:intergenic |
| TGGTTCTGTCTATATCTCGT+TGG | 0.546182 | 1_2:-9825365 | None:intergenic |
| TTTAAGAAGATGAAGGAAAG+TGG | 0.546825 | 1_2:+9825746 | Msa0055030:CDS |
| ATTATGTATGTCAGCCACCA+TGG | 0.547374 | 1_2:+9828969 | Msa0055030:intron |
| ATTCCAAACTGGTCATCATA+GGG | 0.548896 | 1_2:+9830410 | Msa0055030:CDS |
| ACATTGTTCTTAATAGACCA+TGG | 0.549000 | 1_2:+9826879 | Msa0055030:CDS |
| CCAAGTTCTTTGTCCCATGG+TGG | 0.557973 | 1_2:-9828983 | None:intergenic |
| GGTGTGAAACATATTTCTAA+GGG | 0.557980 | 1_2:-9830766 | None:intergenic |
| AATCTGACATTGCCACCACC+TGG | 0.559929 | 1_2:+9829228 | Msa0055030:CDS |
| AAGGAAACATTCATCCATGT+TGG | 0.564015 | 1_2:-9827486 | None:intergenic |
| TTACAGTGTGATCAGAATGC+AGG | 0.564930 | 1_2:+9830447 | Msa0055030:three_prime_UTR |
| AAGGTTGAGCAACAAAAGTA+GGG | 0.572523 | 1_2:-9825844 | None:intergenic |
| TTATTGGTTTAAGAAGATGA+AGG | 0.575689 | 1_2:+9825739 | Msa0055030:CDS |
| ATACCCAACTTAGCCAGAGA+TGG | 0.578267 | 1_2:+9827073 | Msa0055030:CDS |
| TGATGCCAATCTGTGACAAA+TGG | 0.578611 | 1_2:-9830479 | None:intergenic |
| ATCATAGGGCTTTCTACAGG+TGG | 0.580592 | 1_2:+9830424 | Msa0055030:exon |
| TTATGTATGTCAGCCACCAT+GGG | 0.581129 | 1_2:+9828970 | Msa0055030:intron |
| GATGGTTTACGTGAAGGACC+AGG | 0.582960 | 1_2:-9825590 | None:intergenic |
| TACAGTGTGATCAGAATGCA+GGG | 0.583449 | 1_2:+9830448 | Msa0055030:three_prime_UTR |
| ACCACACTTTCTGGAACACC+AGG | 0.589263 | 1_2:-9829246 | None:intergenic |
| AGGCGGCTATATGAAAGGGT+TGG | 0.596018 | 1_2:-9825385 | None:intergenic |
| TTAAGAAGATTGCTCCAACA+TGG | 0.603507 | 1_2:+9827472 | Msa0055030:CDS |
| CTTTCTGGAACACCAGGTGG+TGG | 0.609144 | 1_2:-9829240 | None:intergenic |
| GGTGATGACAATTCTGGTAT+GGG | 0.617478 | 1_2:+9825767 | Msa0055030:CDS |
| GACCATGGGCATTTGTACAG+TGG | 0.619885 | 1_2:+9826894 | Msa0055030:CDS |
| ACCTGGTGTTCCAGAAAGTG+TGG | 0.626276 | 1_2:+9829245 | Msa0055030:CDS |
| TGATCCATTCCAGAAGGCAA+AGG | 0.638296 | 1_2:-9825863 | None:intergenic |
| AGCCACTGTACAAATGCCCA+TGG | 0.640117 | 1_2:-9826896 | None:intergenic |
| GATGACAATTCTGGTATGGG+TGG | 0.644898 | 1_2:+9825770 | Msa0055030:CDS |
| GAAGTTGGTGAATTATTAGG+CGG | 0.651672 | 1_2:-9825402 | None:intergenic |
| TGTAGATGACTTTACACCTG+AGG | 0.656696 | 1_2:+9830529 | Msa0055030:three_prime_UTR |
| CCAGTTTGGAATATTTGCTG+CGG | 0.657015 | 1_2:-9830399 | None:intergenic |
| TGGGTGTGACTATTCCATGA+AGG | 0.657511 | 1_2:+9829033 | Msa0055030:CDS |
| AGAACCTGATCCATTCCAGA+AGG | 0.663960 | 1_2:-9825869 | None:intergenic |
| TTACAGGTCCATTCTCCTCG+GGG | 0.680836 | 1_2:-9827165 | None:intergenic |
| TGTTGGTAACATATTACACA+AGG | 0.688104 | 1_2:+9827683 | Msa0055030:CDS |
| TTGTATGAAATAAGTTACCG+AGG | 0.692022 | 1_2:-9830686 | None:intergenic |
| ACACTTTCTGGAACACCAGG+TGG | 0.696694 | 1_2:-9829243 | None:intergenic |
| ACATAAGAATTACAGATACA+CGG | 0.703455 | 1_2:-9830509 | None:intergenic |
| GCTAAGAAAGTACTACCCCG+AGG | 0.782953 | 1_2:+9827150 | Msa0055030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAGAATTTAATAATAGAT+CGG | - | chr1_2:9829061-9829080 | None:intergenic | 10.0% |
| !! | AACAAAACAAATTTCAAAAA+TGG | + | chr1_2:9825466-9825485 | Msa0055030:exon | 15.0% |
| !! | ACAAAACAAATTTCAAAAAT+GGG | + | chr1_2:9825467-9825486 | Msa0055030:exon | 15.0% |
| !!! | CTGTAATTTGTAATTTTTTT+TGG | + | chr1_2:9826419-9826438 | Msa0055030:intron | 15.0% |
| !!! | AATTTCAAAAGTTATTTTGA+AGG | + | chr1_2:9826743-9826762 | Msa0055030:intron | 15.0% |
| !!! | TAAATTTCATTTTCTATTCT+AGG | + | chr1_2:9826961-9826980 | Msa0055030:intron | 15.0% |
| !!! | TTTAATTTTGCAAAAATGAT+AGG | + | chr1_2:9827443-9827462 | Msa0055030:intron | 15.0% |
| !!! | ATGATGTATTCATTTTTTTT+TGG | + | chr1_2:9828790-9828809 | Msa0055030:intron | 15.0% |
| !! | TGAAAGTTAAAAAAATGTAT+TGG | + | chr1_2:9829550-9829569 | Msa0055030:intron | 15.0% |
| !! | GAAAGTTAAAAAAATGTATT+GGG | + | chr1_2:9829551-9829570 | Msa0055030:intron | 15.0% |
| !! | AAAGTTAAAAAAATGTATTG+GGG | + | chr1_2:9829552-9829571 | Msa0055030:intron | 15.0% |
| !!! | TTTTTTCTTTTTTGAAAACT+TGG | - | chr1_2:9829731-9829750 | None:intergenic | 15.0% |
| !! | TCAAAAAAGAAAAAACAAAA+AGG | + | chr1_2:9829736-9829755 | Msa0055030:intron | 15.0% |
| !!! | ATGATTTGTTTATAAACAAT+CGG | - | chr1_2:9830050-9830069 | None:intergenic | 15.0% |
| !!! | TTATGTCTAATTTTACAATT+TGG | + | chr1_2:9830165-9830184 | Msa0055030:intron | 15.0% |
| !!! | TTATGTCTAATTTTACAATT+TGG | + | chr1_2:9830165-9830184 | Msa0055030:intron | 15.0% |
| !!! | TGTTGATTTGTATAAATGAT+TGG | + | chr1_2:9825943-9825962 | Msa0055030:intron | 20.0% |
| !!! | GTTGATTTGTATAAATGATT+GGG | + | chr1_2:9825944-9825963 | Msa0055030:intron | 20.0% |
| !!! | TATAGTACTATACTTGATTT+TGG | + | chr1_2:9826130-9826149 | Msa0055030:intron | 20.0% |
| !!! | ATAGTACTATACTTGATTTT+GGG | + | chr1_2:9826131-9826150 | Msa0055030:intron | 20.0% |
| !!! | ATTTTATTGAAATCAGACTA+TGG | - | chr1_2:9826534-9826553 | None:intergenic | 20.0% |
| !! | ATAGTCTGATTTCAATAAAA+TGG | + | chr1_2:9826533-9826552 | Msa0055030:intron | 20.0% |
| !!! | ATTCTGAAACTAAAAATTCT+TGG | + | chr1_2:9826646-9826665 | Msa0055030:intron | 20.0% |
| !! | TATTAATGTATGTTCCTTTA+TGG | + | chr1_2:9826849-9826868 | Msa0055030:intron | 20.0% |
| !!! | TTTCTGGTAATTATGATTTA+TGG | + | chr1_2:9827250-9827269 | Msa0055030:intron | 20.0% |
| !! | GCAATGAAGAATTATATTTA+AGG | + | chr1_2:9827857-9827876 | Msa0055030:intron | 20.0% |
| !! | AAACAAATCTAACACTTTAA+AGG | + | chr1_2:9828190-9828209 | Msa0055030:intron | 20.0% |
| !! | TCATAGAAAAGTTAAAAGAA+AGG | + | chr1_2:9828439-9828458 | Msa0055030:intron | 20.0% |
| !!! | AATATCCAGATATTTTGTAT+GGG | - | chr1_2:9828508-9828527 | None:intergenic | 20.0% |
| !!! | TAATATCCAGATATTTTGTA+TGG | - | chr1_2:9828509-9828528 | None:intergenic | 20.0% |
| !! | TGTACTAAAAATCACTTATA+TGG | + | chr1_2:9828877-9828896 | Msa0055030:intron | 20.0% |
| !! | GTACTAAAAATCACTTATAT+GGG | + | chr1_2:9828878-9828897 | Msa0055030:intron | 20.0% |
| !!! | ATTTAACTCAATCAGTTTTA+AGG | + | chr1_2:9829389-9829408 | Msa0055030:intron | 20.0% |
| !!! | ATTATTTGTTTTTCCTGAAT+AGG | + | chr1_2:9830008-9830027 | Msa0055030:intron | 20.0% |
| !! | ATTTATGTAAAATTATGCTG+CGG | - | chr1_2:9830233-9830252 | None:intergenic | 20.0% |
| !!! | TCTTCTTTTTTTGAATGTTT+GGG | + | chr1_2:9830294-9830313 | Msa0055030:intron | 20.0% |
| !!! | AAAATTTCAATATGGTGTTT+TGG | - | chr1_2:9830607-9830626 | None:intergenic | 20.0% |
| !! | TTATAATGATTGTTGTAGTT+AGG | + | chr1_2:9830636-9830655 | Msa0055030:three_prime_UTR | 20.0% |
| !! | TATAATGATTGTTGTAGTTA+GGG | + | chr1_2:9830637-9830656 | Msa0055030:three_prime_UTR | 20.0% |
| ! | ATGTTACTGAGAATGTTATT+AGG | - | chr1_2:9825517-9825536 | None:intergenic | 25.0% |
| ! | AGTGTAGAGTTATGTATTAT+TGG | + | chr1_2:9825723-9825742 | Msa0055030:CDS | 25.0% |
| !!! | TTATTGGTTTAAGAAGATGA+AGG | + | chr1_2:9825739-9825758 | Msa0055030:CDS | 25.0% |
| !! | ATTAATTTGAGAAATGCTAG+TGG | + | chr1_2:9826017-9826036 | Msa0055030:intron | 25.0% |
| !! | TAGTACTATACTTGATTTTG+GGG | + | chr1_2:9826132-9826151 | Msa0055030:intron | 25.0% |
| !!! | AAAGATGGTATTTTTGTGTT+TGG | + | chr1_2:9826155-9826174 | Msa0055030:intron | 25.0% |
| ! | TTGAAATCACTACTGTTATT+TGG | + | chr1_2:9826336-9826355 | Msa0055030:intron | 25.0% |
| ! | ATAAAATGGCCTAATATTCT+TGG | + | chr1_2:9826547-9826566 | Msa0055030:intron | 25.0% |
| !!! | TTTATTCTCTGAAATTTGTG+TGG | + | chr1_2:9826696-9826715 | Msa0055030:intron | 25.0% |
| !!! | TTTTGAAGGTTCATTAATTC+TGG | + | chr1_2:9826757-9826776 | Msa0055030:intron | 25.0% |
| ! | TTTGAAGGTTCATTAATTCT+GGG | + | chr1_2:9826758-9826777 | Msa0055030:intron | 25.0% |
| !!! | CATTTTCTATTCTAGGATTT+TGG | + | chr1_2:9826968-9826987 | Msa0055030:intron | 25.0% |
| ! | TAACCAATATAGATCCAATT+GGG | + | chr1_2:9827185-9827204 | Msa0055030:CDS | 25.0% |
| !! | ACAGTGTAGAACTTTTTATA+CGG | - | chr1_2:9827303-9827322 | None:intergenic | 25.0% |
| ! | GTGTGTGAATTAAATACTTA+TGG | + | chr1_2:9827390-9827409 | Msa0055030:intron | 25.0% |
| !! | ATAAAAATCAAGTTGTTGTG+AGG | - | chr1_2:9827607-9827626 | None:intergenic | 25.0% |
| !! | CTATTTTGTATTGTTGATAC+AGG | + | chr1_2:9827628-9827647 | Msa0055030:intron | 25.0% |
| ! | AAGAGATATGTAGAAATCAA+TGG | - | chr1_2:9827812-9827831 | None:intergenic | 25.0% |
| !! | ATTTGAAATCCTTGACTAAA+TGG | - | chr1_2:9827953-9827972 | None:intergenic | 25.0% |
| ! | ACTTGATATACTAACACTTA+AGG | - | chr1_2:9827988-9828007 | None:intergenic | 25.0% |
| ! | TTAATGAACTCTTCTAAACA+AGG | - | chr1_2:9828034-9828053 | None:intergenic | 25.0% |
| ! | AAAAAATGAGTCATGCTATA+TGG | + | chr1_2:9828105-9828124 | Msa0055030:intron | 25.0% |
| ! | TATTTCCCATACAAAATATC+TGG | + | chr1_2:9828500-9828519 | Msa0055030:intron | 25.0% |
| ! | ACGATATGATTTGATAAGAT+TGG | - | chr1_2:9828569-9828588 | None:intergenic | 25.0% |
| ! | AGCAAATGAGAATTAAACAT+GGG | - | chr1_2:9828842-9828861 | None:intergenic | 25.0% |
| ! | AAGCAAATGAGAATTAAACA+TGG | - | chr1_2:9828843-9828862 | None:intergenic | 25.0% |
| !! | TTTTAGTACAATGTTGGAAA+TGG | - | chr1_2:9828867-9828886 | None:intergenic | 25.0% |
| !!! | AGTGATTTTTAGTACAATGT+TGG | - | chr1_2:9828873-9828892 | None:intergenic | 25.0% |
| ! | TTCATAATTCACTACACTTA+TGG | + | chr1_2:9829013-9829032 | Msa0055030:CDS | 25.0% |
| ! | TCATAATTCACTACACTTAT+GGG | + | chr1_2:9829014-9829033 | Msa0055030:CDS | 25.0% |
| ! | TTAAAAAAATGTATTGGGGT+GGG | + | chr1_2:9829556-9829575 | Msa0055030:intron | 25.0% |
| !!! | TTTTTTGAAAACTTGGTATC+CGG | - | chr1_2:9829724-9829743 | None:intergenic | 25.0% |
| ! | AAAGAAAAAACAAAAAGGTG+AGG | + | chr1_2:9829741-9829760 | Msa0055030:intron | 25.0% |
| ! | AAGAAAAAACAAAAAGGTGA+GGG | + | chr1_2:9829742-9829761 | Msa0055030:intron | 25.0% |
| ! | TTAGATGACCTTAAAATCAA+GGG | - | chr1_2:9829973-9829992 | None:intergenic | 25.0% |
| ! | ATTAGATGACCTTAAAATCA+AGG | - | chr1_2:9829974-9829993 | None:intergenic | 25.0% |
| !!! | TCTTCTTGTTTTGAATGTTT+GGG | + | chr1_2:9830125-9830144 | Msa0055030:intron | 25.0% |
| !!! | CTCTTCTTTTTTTGAATGTT+TGG | + | chr1_2:9830293-9830312 | Msa0055030:intron | 25.0% |
| ! | ACATAAGAATTACAGATACA+CGG | - | chr1_2:9830512-9830531 | None:intergenic | 25.0% |
| !!! | ACATGAATTTTTTCAATGCT+TGG | + | chr1_2:9830555-9830574 | Msa0055030:three_prime_UTR | 25.0% |
| !! | GAAGAAGTTGGTGAATTATT+AGG | - | chr1_2:9825408-9825427 | None:intergenic | 30.0% |
| !! | CAAATTTCAAAAATGGGTTG+TGG | + | chr1_2:9825473-9825492 | Msa0055030:exon | 30.0% |
| ACATACAACATCATTATCTC+AGG | + | chr1_2:9825542-9825561 | Msa0055030:CDS | 30.0% | |
| ! | TTTATTGATGGTTTACGTGA+AGG | - | chr1_2:9825599-9825618 | None:intergenic | 30.0% |
| !!! | GAAGCACTTTTTCTATTAAG+TGG | - | chr1_2:9825644-9825663 | None:intergenic | 30.0% |
| CTGATTCTGTTTACAATACA+TGG | + | chr1_2:9825699-9825718 | Msa0055030:CDS | 30.0% | |
| TTTAAGAAGATGAAGGAAAG+TGG | + | chr1_2:9825746-9825765 | Msa0055030:CDS | 30.0% | |
| ! | TTTACTAGGATTTTGCATTC+TGG | + | chr1_2:9825794-9825813 | Msa0055030:CDS | 30.0% |
| TGGTAAAACTGATCAGTATA+TGG | + | chr1_2:9825814-9825833 | Msa0055030:CDS | 30.0% | |
| TACTTGATCTTGGTGAAAAA+TGG | + | chr1_2:9825973-9825992 | Msa0055030:intron | 30.0% | |
| TCAAACTCAACTATCAACTA+TGG | - | chr1_2:9826052-9826071 | None:intergenic | 30.0% | |
| TAGTTGAGTTTGAGTGATTT+AGG | + | chr1_2:9826059-9826078 | Msa0055030:intron | 30.0% | |
| TTTAAACTGAGAAATGCTAG+TGG | + | chr1_2:9826207-9826226 | Msa0055030:intron | 30.0% | |
| ACAAAGTCAACTATCAACTT+TGG | - | chr1_2:9826242-9826261 | None:intergenic | 30.0% | |
| ! | TAGTTGACTTTGTGTGATTT+AGG | + | chr1_2:9826249-9826268 | Msa0055030:intron | 30.0% |
| ! | TCACTACTGTTATTTGGAAA+TGG | + | chr1_2:9826342-9826361 | Msa0055030:intron | 30.0% |
| GCAATCACTATTTGACTATA+AGG | - | chr1_2:9826371-9826390 | None:intergenic | 30.0% | |
| TATAGTCAAATAGTGATTGC+AGG | + | chr1_2:9826371-9826390 | Msa0055030:intron | 30.0% | |
| TGATTCACTCCAAGAATATT+AGG | - | chr1_2:9826559-9826578 | None:intergenic | 30.0% | |
| TAATTTAGTCCCTAAAACAG+TGG | + | chr1_2:9826580-9826599 | Msa0055030:intron | 30.0% | |
| ! | TTGGTTACATTAGTCCTTTT+GGG | + | chr1_2:9826665-9826684 | Msa0055030:intron | 30.0% |
| TTGAAGGTTCATTAATTCTG+GGG | + | chr1_2:9826759-9826778 | Msa0055030:intron | 30.0% | |
| ACATTGTTCTTAATAGACCA+TGG | + | chr1_2:9826879-9826898 | Msa0055030:CDS | 30.0% | |
| CATTGTTCTTAATAGACCAT+GGG | + | chr1_2:9826880-9826899 | Msa0055030:CDS | 30.0% | |
| TAGGCTCGATATAAAAGAAA+GGG | - | chr1_2:9827114-9827133 | None:intergenic | 30.0% | |
| TTAGGCTCGATATAAAAGAA+AGG | - | chr1_2:9827115-9827134 | None:intergenic | 30.0% | |
| AGCACTTTCTCATATTTCTT+AGG | - | chr1_2:9827133-9827152 | None:intergenic | 30.0% | |
| ! | ATTGGATCTATATTGGTTAC+AGG | - | chr1_2:9827184-9827203 | None:intergenic | 30.0% |
| GTAACCAATATAGATCCAAT+TGG | + | chr1_2:9827184-9827203 | Msa0055030:CDS | 30.0% | |
| ATTCCCAATTGGATCTATAT+TGG | - | chr1_2:9827191-9827210 | None:intergenic | 30.0% | |
| !! | ATCTGTCATTTAGTTCTTTC+TGG | + | chr1_2:9827234-9827253 | Msa0055030:intron | 30.0% |
| !! | TACTTCTAAAATCACACGTA+TGG | - | chr1_2:9827345-9827364 | None:intergenic | 30.0% |
| !! | TGTTGGTAACATATTACACA+AGG | + | chr1_2:9827683-9827702 | Msa0055030:CDS | 30.0% |
| !! | TTCATGATTCAGGTTGAATA+AGG | + | chr1_2:9827708-9827727 | Msa0055030:intron | 30.0% |
| AAGTGTTAGTATATCAAGTG+TGG | + | chr1_2:9827989-9828008 | Msa0055030:intron | 30.0% | |
| GATTTGATAAGATTGGAAAC+TGG | - | chr1_2:9828562-9828581 | None:intergenic | 30.0% | |
| TCAAATCATATCGTGTAAAC+AGG | + | chr1_2:9828575-9828594 | Msa0055030:intron | 30.0% | |
| CAAATCATATCGTGTAAACA+GGG | + | chr1_2:9828576-9828595 | Msa0055030:intron | 30.0% | |
| ! | TCTTCAAACAAGAAGCTTTT+TGG | + | chr1_2:9828727-9828746 | Msa0055030:intron | 30.0% |
| TTGCTTAAGTCGTTAATGTA+TGG | + | chr1_2:9829119-9829138 | Msa0055030:intron | 30.0% | |
| ATGTATGGTGTGAAATAATC+AGG | + | chr1_2:9829134-9829153 | Msa0055030:intron | 30.0% | |
| TGTATGGTGTGAAATAATCA+GGG | + | chr1_2:9829135-9829154 | Msa0055030:intron | 30.0% | |
| GAACTGACATATGGAAAAAT+TGG | + | chr1_2:9829159-9829178 | Msa0055030:CDS | 30.0% | |
| !!! | TGTGTCGGTTTTGTTTTTTT+GGG | + | chr1_2:9829328-9829347 | Msa0055030:intron | 30.0% |
| TTTGAGAGTTTAGATCAGAA+AGG | + | chr1_2:9829417-9829436 | Msa0055030:intron | 30.0% | |
| GTTAAAAAAATGTATTGGGG+TGG | + | chr1_2:9829555-9829574 | Msa0055030:intron | 30.0% | |
| ! | GATTGGTCATACAAATTAGT+TGG | + | chr1_2:9829690-9829709 | Msa0055030:intron | 30.0% |
| TGACTTTACTCAAATTGGTT+GGG | - | chr1_2:9829834-9829853 | None:intergenic | 30.0% | |
| ATGACTTTACTCAAATTGGT+TGG | - | chr1_2:9829835-9829854 | None:intergenic | 30.0% | |
| AACCAATTTGAGTAAAGTCA+TGG | + | chr1_2:9829834-9829853 | Msa0055030:intron | 30.0% | |
| ATCCATGACTTTACTCAAAT+TGG | - | chr1_2:9829839-9829858 | None:intergenic | 30.0% | |
| ATTTGAGTAAAGTCATGGAT+TGG | + | chr1_2:9829839-9829858 | Msa0055030:intron | 30.0% | |
| TTTGAGTAAAGTCATGGATT+GGG | + | chr1_2:9829840-9829859 | Msa0055030:intron | 30.0% | |
| ! | AAGAGGGTATATGATAACAA+TGG | - | chr1_2:9829884-9829903 | None:intergenic | 30.0% |
| !! | AGCACAGTTTTTCTTTAAGA+GGG | - | chr1_2:9829900-9829919 | None:intergenic | 30.0% |
| AGAAAGACATTCATACTGTT+TGG | + | chr1_2:9829931-9829950 | Msa0055030:intron | 30.0% | |
| GAAAGACATTCATACTGTTT+GGG | + | chr1_2:9829932-9829951 | Msa0055030:intron | 30.0% | |
| ! | TTTTCCTGAATAGGAACAAT+TGG | + | chr1_2:9830017-9830036 | Msa0055030:intron | 30.0% |
| !!! | CTCTTCTTGTTTTGAATGTT+TGG | + | chr1_2:9830124-9830143 | Msa0055030:intron | 30.0% |
| ! | TTTTGAATGTTTGGGAGATT+TGG | + | chr1_2:9830133-9830152 | Msa0055030:intron | 30.0% |
| TTTGAATGTTTGGGAGATTT+GGG | + | chr1_2:9830134-9830153 | Msa0055030:intron | 30.0% | |
| !!! | CAATTTGGTTTTCCTTTTCT+AGG | + | chr1_2:9830180-9830199 | Msa0055030:intron | 30.0% |
| TCAAAAAAAGAAGAGCTTGA+AGG | - | chr1_2:9830288-9830307 | None:intergenic | 30.0% | |
| ! | TTTTGAATGTTTGGGAGATT+TGG | + | chr1_2:9830133-9830152 | Msa0055030:intron | 30.0% |
| TTTGAATGTTTGGGAGATTT+GGG | + | chr1_2:9830134-9830153 | Msa0055030:intron | 30.0% | |
| !!! | CAATTTGGTTTTCCTTTTCT+AGG | + | chr1_2:9830180-9830199 | Msa0055030:intron | 30.0% |
| AAAAAATTCATGTTTGCCTC+AGG | - | chr1_2:9830548-9830567 | None:intergenic | 30.0% | |
| TTGTATGAAATAAGTTACCG+AGG | - | chr1_2:9830689-9830708 | None:intergenic | 30.0% | |
| ! | GGTGTGAAACATATTTCTAA+GGG | - | chr1_2:9830769-9830788 | None:intergenic | 30.0% |
| ! | TGGTGTGAAACATATTTCTA+AGG | - | chr1_2:9830770-9830789 | None:intergenic | 30.0% |
| !! | TATCTCGTTGGTGTTGAAAA+AGG | - | chr1_2:9825356-9825375 | None:intergenic | 35.0% |
| TATTAGGCGGCTATATGAAA+GGG | - | chr1_2:9825392-9825411 | None:intergenic | 35.0% | |
| TTATTAGGCGGCTATATGAA+AGG | - | chr1_2:9825393-9825412 | None:intergenic | 35.0% | |
| !! | GAAGTTGGTGAATTATTAGG+CGG | - | chr1_2:9825405-9825424 | None:intergenic | 35.0% |
| TGTGAAGAAGAAGAAGAAGT+TGG | - | chr1_2:9825420-9825439 | None:intergenic | 35.0% | |
| !! | ACTGGGTCGATTTTTATTGA+TGG | - | chr1_2:9825611-9825630 | None:intergenic | 35.0% |
| TAAGTGGCATCTTGATTACT+GGG | - | chr1_2:9825628-9825647 | None:intergenic | 35.0% | |
| TTAAGTGGCATCTTGATTAC+TGG | - | chr1_2:9825629-9825648 | None:intergenic | 35.0% | |
| AAGGTTGAGCAACAAAAGTA+GGG | - | chr1_2:9825847-9825866 | None:intergenic | 35.0% | |
| AAAGGTTGAGCAACAAAAGT+AGG | - | chr1_2:9825848-9825867 | None:intergenic | 35.0% | |
| !! | TACTTGATTTTGGGGAAAGA+TGG | + | chr1_2:9826140-9826159 | Msa0055030:intron | 35.0% |
| !!! | AGTGAGGTTGGTAGATTTTT+AGG | + | chr1_2:9826311-9826330 | Msa0055030:intron | 35.0% |
| !!! | GTGAGGTTGGTAGATTTTTA+GGG | + | chr1_2:9826312-9826331 | Msa0055030:intron | 35.0% |
| ! | AACGGTTAAGATTTGAAGCT+TGG | - | chr1_2:9826452-9826471 | None:intergenic | 35.0% |
| ! | CTTGGTTACATTAGTCCTTT+TGG | + | chr1_2:9826664-9826683 | Msa0055030:intron | 35.0% |
| AATAAACTGATCGACCCAAA+AGG | - | chr1_2:9826682-9826701 | None:intergenic | 35.0% | |
| ! | AAATTTGTCCTCAAGTTGTG+GGG | - | chr1_2:9826799-9826818 | None:intergenic | 35.0% |
| ! | CAAATTTGTCCTCAAGTTGT+GGG | - | chr1_2:9826800-9826819 | None:intergenic | 35.0% |
| ! | TCAAATTTGTCCTCAAGTTG+TGG | - | chr1_2:9826801-9826820 | None:intergenic | 35.0% |
| AATGTATGTTCCTTTATGGC+AGG | + | chr1_2:9826853-9826872 | Msa0055030:intron | 35.0% | |
| ATGTATGTTCCTTTATGGCA+GGG | + | chr1_2:9826854-9826873 | Msa0055030:intron | 35.0% | |
| GGTTTCACAATGATATGATC+TGG | - | chr1_2:9827052-9827071 | None:intergenic | 35.0% | |
| ATTACAGGTGAATTCCCAAT+TGG | - | chr1_2:9827202-9827221 | None:intergenic | 35.0% | |
| TGTTGGAGCAATCTTCTTAA+GGG | - | chr1_2:9827472-9827491 | None:intergenic | 35.0% | |
| ATGTTGGAGCAATCTTCTTA+AGG | - | chr1_2:9827473-9827492 | None:intergenic | 35.0% | |
| TTAAGAAGATTGCTCCAACA+TGG | + | chr1_2:9827472-9827491 | Msa0055030:CDS | 35.0% | |
| AAGGAAACATTCATCCATGT+TGG | - | chr1_2:9827489-9827508 | None:intergenic | 35.0% | |
| AACATGGATGAATGTTTCCT+TGG | + | chr1_2:9827488-9827507 | Msa0055030:CDS | 35.0% | |
| ! | AAACCGATAAAGCTTTTGGA+TGG | + | chr1_2:9827529-9827548 | Msa0055030:CDS | 35.0% |
| ! | AACCGATAAAGCTTTTGGAT+GGG | + | chr1_2:9827530-9827549 | Msa0055030:CDS | 35.0% |
| GATAGTACTACTTAGAGAAG+TGG | - | chr1_2:9827576-9827595 | None:intergenic | 35.0% | |
| GTGTTATCAAGGTTCTCATA+TGG | + | chr1_2:9827763-9827782 | Msa0055030:intron | 35.0% | |
| TACCACAATAAGTGTTCAAG+AGG | + | chr1_2:9828061-9828080 | Msa0055030:intron | 35.0% | |
| ACTTTACCCACAACAAGTAT+TGG | + | chr1_2:9828234-9828253 | Msa0055030:intron | 35.0% | |
| !! | AACTGTCCAATACTTGTTGT+GGG | - | chr1_2:9828243-9828262 | None:intergenic | 35.0% |
| GAGAAAAAACGAGAGATATG+TGG | - | chr1_2:9828685-9828704 | None:intergenic | 35.0% | |
| !! | CTTTTTGGTCCTGTTACTAT+AGG | + | chr1_2:9828742-9828761 | Msa0055030:intron | 35.0% |
| TACGTGATTCCTATAGTAAC+AGG | - | chr1_2:9828754-9828773 | None:intergenic | 35.0% | |
| ATAATAGATCGGTACCTTCA+TGG | - | chr1_2:9829050-9829069 | None:intergenic | 35.0% | |
| ACAACACTACATGTACACAT+CGG | + | chr1_2:9829085-9829104 | Msa0055030:intron | 35.0% | |
| CATATGGAAAAATTGGAGAG+TGG | + | chr1_2:9829166-9829185 | Msa0055030:CDS | 35.0% | |
| ATGAAACATACCACACTTTC+TGG | - | chr1_2:9829258-9829277 | None:intergenic | 35.0% | |
| !!! | TCCTTCACTTTTTTGTGTGT+CGG | + | chr1_2:9829313-9829332 | Msa0055030:intron | 35.0% |
| !!! | GTGTGTCGGTTTTGTTTTTT+TGG | + | chr1_2:9829327-9829346 | Msa0055030:intron | 35.0% |
| !!! | TCGGTTTTGTTTTTTTGGGA+GGG | + | chr1_2:9829332-9829351 | Msa0055030:intron | 35.0% |
| AGAGTTTAGATCAGAAAGGA+GGG | + | chr1_2:9829421-9829440 | Msa0055030:intron | 35.0% | |
| GTTATGAGGATAAAGACTAG+AGG | + | chr1_2:9829447-9829466 | Msa0055030:intron | 35.0% | |
| AGGATAAAGACTAGAGGATA+GGG | + | chr1_2:9829453-9829472 | Msa0055030:intron | 35.0% | |
| AGTAGTCTCTTATCTTGCAT+AGG | + | chr1_2:9829489-9829508 | Msa0055030:intron | 35.0% | |
| TACGTATTATAGAGAGAGAG+AGG | - | chr1_2:9829602-9829621 | None:intergenic | 35.0% | |
| AAATTAGTTGGTCCTTGAAC+CGG | + | chr1_2:9829702-9829721 | Msa0055030:intron | 35.0% | |
| ! | CAGCACAGTTTTTCTTTAAG+AGG | - | chr1_2:9829901-9829920 | None:intergenic | 35.0% |
| CTCTTAAAGAAAAACTGTGC+TGG | + | chr1_2:9829899-9829918 | Msa0055030:intron | 35.0% | |
| ! | CTATGGATCCCTTGATTTTA+AGG | + | chr1_2:9829962-9829981 | Msa0055030:intron | 35.0% |
| TCAAAACAAGAAGAGCTTGA+AGG | - | chr1_2:9830119-9830138 | None:intergenic | 35.0% | |
| TATTCCAAACTGGTCATCAT+AGG | + | chr1_2:9830409-9830428 | Msa0055030:CDS | 35.0% | |
| ATTCCAAACTGGTCATCATA+GGG | + | chr1_2:9830410-9830429 | Msa0055030:CDS | 35.0% | |
| TGCTTGGTAAAAATGTGTTG+TGG | + | chr1_2:9830571-9830590 | Msa0055030:three_prime_UTR | 35.0% | |
| GACGAGTTTACGTTCAAATT+TGG | + | chr1_2:9830661-9830680 | Msa0055030:three_prime_UTR | 35.0% | |
| TACGTTCAAATTTGGTACCT+CGG | + | chr1_2:9830669-9830688 | Msa0055030:three_prime_UTR | 35.0% | |
| ! | GGGCAAAAGTTCATGTTTTT+GGG | - | chr1_2:9830749-9830768 | None:intergenic | 35.0% |
| ! | AGGGCAAAAGTTCATGTTTT+TGG | - | chr1_2:9830750-9830769 | None:intergenic | 35.0% |
| ! | TGGTTCTGTCTATATCTCGT+TGG | - | chr1_2:9825368-9825387 | None:intergenic | 40.0% |
| CCAGGAAAATCTTGTCTCAA+AGG | - | chr1_2:9825575-9825594 | None:intergenic | 40.0% | |
| !!! | CCTTTGAGACAAGATTTTCC+TGG | + | chr1_2:9825572-9825591 | Msa0055030:CDS | 40.0% |
| ! | GAAAGTGGTGATGACAATTC+TGG | + | chr1_2:9825761-9825780 | Msa0055030:CDS | 40.0% |
| ! | TGGTGATGACAATTCTGGTA+TGG | + | chr1_2:9825766-9825785 | Msa0055030:CDS | 40.0% |
| GGTGATGACAATTCTGGTAT+GGG | + | chr1_2:9825767-9825786 | Msa0055030:CDS | 40.0% | |
| ! | TGGGAAAGTGTACTTGATCT+TGG | + | chr1_2:9825963-9825982 | Msa0055030:intron | 40.0% |
| ! | CATTGACTAAACTGTGAGTG+AGG | + | chr1_2:9826295-9826314 | Msa0055030:intron | 40.0% |
| GGCTTGGATGTTGTTGTAAA+CGG | - | chr1_2:9826470-9826489 | None:intergenic | 40.0% | |
| TCCCTAAAACAGTGGATAAC+AGG | + | chr1_2:9826588-9826607 | Msa0055030:intron | 40.0% | |
| ! | GCCTGTTATCCACTGTTTTA+GGG | - | chr1_2:9826592-9826611 | None:intergenic | 40.0% |
| ! | TGCCTGTTATCCACTGTTTT+AGG | - | chr1_2:9826593-9826612 | None:intergenic | 40.0% |
| TGGATGAACTAACGTGATTG+AGG | + | chr1_2:9826716-9826735 | Msa0055030:intron | 40.0% | |
| AGTTGTGGGGTAGGTAAAAT+TGG | - | chr1_2:9826786-9826805 | None:intergenic | 40.0% | |
| ACAATGTAACCCTGCCATAA+AGG | - | chr1_2:9826866-9826885 | None:intergenic | 40.0% | |
| ATTCCATCTCTGGCTAAGTT+GGG | - | chr1_2:9827079-9827098 | None:intergenic | 40.0% | |
| AACTTAGCCAGAGATGGAAT+GGG | + | chr1_2:9827079-9827098 | Msa0055030:CDS | 40.0% | |
| GGGAATTCACCTGTAATTGT+TGG | + | chr1_2:9827205-9827224 | Msa0055030:CDS | 40.0% | |
| TTCACCTGTAATTGTTGGCA+AGG | + | chr1_2:9827210-9827229 | Msa0055030:CDS | 40.0% | |
| GATACCTTGCCAACAATTAC+AGG | - | chr1_2:9827217-9827236 | None:intergenic | 40.0% | |
| TGTTTCCTTGGCAATGAAGA+AGG | + | chr1_2:9827500-9827519 | Msa0055030:CDS | 40.0% | |
| !! | CCAAAAGCTTTATCGGTTTC+AGG | - | chr1_2:9827528-9827547 | None:intergenic | 40.0% |
| ! | CCTGAAACCGATAAAGCTTT+TGG | + | chr1_2:9827525-9827544 | Msa0055030:CDS | 40.0% |
| ! | CACCCATCCAAAAGCTTTAT+CGG | - | chr1_2:9827535-9827554 | None:intergenic | 40.0% |
| AAGTTGTTGTGAGGCTAAGA+AGG | - | chr1_2:9827598-9827617 | None:intergenic | 40.0% | |
| ACACAAGGACTTCATGATTC+AGG | + | chr1_2:9827698-9827717 | Msa0055030:CDS | 40.0% | |
| TACTGTCCTGTGTGTTATCA+AGG | + | chr1_2:9827752-9827771 | Msa0055030:intron | 40.0% | |
| ! | TGAGAACCTTGATAACACAC+AGG | - | chr1_2:9827761-9827780 | None:intergenic | 40.0% |
| GGTTCTCATATGGCAATATG+TGG | + | chr1_2:9827773-9827792 | Msa0055030:intron | 40.0% | |
| ACACGACTTCAAGTAAAGCA+CGG | + | chr1_2:9827908-9827927 | Msa0055030:intron | 40.0% | |
| GGATTTCAAATGTCCTGCAT+AGG | + | chr1_2:9827962-9827981 | Msa0055030:intron | 40.0% | |
| AGTATATCAAGTGTGGTGAG+TGG | + | chr1_2:9827996-9828015 | Msa0055030:intron | 40.0% | |
| CACCTCTTGAACACTTATTG+TGG | - | chr1_2:9828066-9828085 | None:intergenic | 40.0% | |
| ! | CAACTGTCCAATACTTGTTG+TGG | - | chr1_2:9828244-9828263 | None:intergenic | 40.0% |
| ACTGCAAATCACTCATGTCT+GGG | - | chr1_2:9828345-9828364 | None:intergenic | 40.0% | |
| GTGACATCTCATCAACAAAG+CGG | + | chr1_2:9828387-9828406 | Msa0055030:intron | 40.0% | |
| ACAGCGGAAGACTCTATATA+GGG | - | chr1_2:9828639-9828658 | None:intergenic | 40.0% | |
| GTGTGTTATGAACTACACAG+CGG | - | chr1_2:9828655-9828674 | None:intergenic | 40.0% | |
| ATTATGTATGTCAGCCACCA+TGG | + | chr1_2:9828969-9828988 | Msa0055030:intron | 40.0% | |
| TTATGTATGTCAGCCACCAT+GGG | + | chr1_2:9828970-9828989 | Msa0055030:intron | 40.0% | |
| AATCAGGGTGAACTGACATA+TGG | + | chr1_2:9829150-9829169 | Msa0055030:intron | 40.0% | |
| ATGGAAAAATTGGAGAGTGG+AGG | + | chr1_2:9829169-9829188 | Msa0055030:CDS | 40.0% | |
| !!! | GGTGGCAATGTCAGATTTTT+TGG | - | chr1_2:9829225-9829244 | None:intergenic | 40.0% |
| AAGTAACCACACTAACACGA+AGG | - | chr1_2:9829284-9829303 | None:intergenic | 40.0% | |
| ACCGACACACAAAAAAGTGA+AGG | - | chr1_2:9829317-9829336 | None:intergenic | 40.0% | |
| !!! | GTCGGTTTTGTTTTTTTGGG+AGG | + | chr1_2:9829331-9829350 | Msa0055030:intron | 40.0% |
| !!! | CGGTTTTGTTTTTTTGGGAG+GGG | + | chr1_2:9829333-9829352 | Msa0055030:intron | 40.0% |
| !!! | GGTTTTGTTTTTTTGGGAGG+GGG | + | chr1_2:9829334-9829353 | Msa0055030:intron | 40.0% |
| !!! | GTTTTGTTTTTTTGGGAGGG+GGG | + | chr1_2:9829335-9829354 | Msa0055030:intron | 40.0% |
| GAGAGTTTAGATCAGAAAGG+AGG | + | chr1_2:9829420-9829439 | Msa0055030:intron | 40.0% | |
| GAGTTTAGATCAGAAAGGAG+GGG | + | chr1_2:9829422-9829441 | Msa0055030:intron | 40.0% | |
| AGTTTAGATCAGAAAGGAGG+GGG | + | chr1_2:9829423-9829442 | Msa0055030:intron | 40.0% | |
| GAGGATAAAGACTAGAGGAT+AGG | + | chr1_2:9829452-9829471 | Msa0055030:intron | 40.0% | |
| TAAAGACTAGAGGATAGGGA+AGG | + | chr1_2:9829457-9829476 | Msa0055030:intron | 40.0% | |
| TAGAGGATAGGGAAGGATAA+TGG | + | chr1_2:9829464-9829483 | Msa0055030:intron | 40.0% | |
| !!! | GGAGAGTGTTTTTGAAAGAG+AGG | - | chr1_2:9829654-9829673 | None:intergenic | 40.0% |
| CAATCTCAAAATCCACTTGC+AGG | - | chr1_2:9829675-9829694 | None:intergenic | 40.0% | |
| !!! | CTGCAAGTGGATTTTGAGAT+TGG | + | chr1_2:9829673-9829692 | Msa0055030:intron | 40.0% |
| AAAACTTGGTATCCGGTTCA+AGG | - | chr1_2:9829717-9829736 | None:intergenic | 40.0% | |
| TTGTGCTAGGAGGAACAAAA+GGG | - | chr1_2:9829776-9829795 | None:intergenic | 40.0% | |
| TTTGTGCTAGGAGGAACAAA+AGG | - | chr1_2:9829777-9829796 | None:intergenic | 40.0% | |
| !! | TGTGTACTAGTCTTTGTGCT+AGG | - | chr1_2:9829789-9829808 | None:intergenic | 40.0% |
| TTACTCAAATTGGTTGGGCT+CGG | - | chr1_2:9829829-9829848 | None:intergenic | 40.0% | |
| TGAGCCAATTGTTCCTATTC+AGG | - | chr1_2:9830024-9830043 | None:intergenic | 40.0% | |
| TCACTAGAGTCACCTAGAAA+AGG | - | chr1_2:9830364-9830383 | None:intergenic | 40.0% | |
| CTAGGTGACTCTAGTGAAAA+TGG | + | chr1_2:9830367-9830386 | Msa0055030:intron | 40.0% | |
| ! | CCAGTTTGGAATATTTGCTG+CGG | - | chr1_2:9830402-9830421 | None:intergenic | 40.0% |
| TTACAGTGTGATCAGAATGC+AGG | + | chr1_2:9830447-9830466 | Msa0055030:three_prime_UTR | 40.0% | |
| TACAGTGTGATCAGAATGCA+GGG | + | chr1_2:9830448-9830467 | Msa0055030:three_prime_UTR | 40.0% | |
| TGATGCCAATCTGTGACAAA+TGG | - | chr1_2:9830482-9830501 | None:intergenic | 40.0% | |
| TGTAGATGACTTTACACCTG+AGG | + | chr1_2:9830529-9830548 | Msa0055030:three_prime_UTR | 40.0% | |
| GATGACAATTCTGGTATGGG+TGG | + | chr1_2:9825770-9825789 | Msa0055030:CDS | 45.0% | |
| ! | CTGGTATGGGTGGATTTACT+AGG | + | chr1_2:9825780-9825799 | Msa0055030:CDS | 45.0% |
| ! | TCAACCTTTGCCTTCTGGAA+TGG | + | chr1_2:9825859-9825878 | Msa0055030:CDS | 45.0% |
| TGATCCATTCCAGAAGGCAA+AGG | - | chr1_2:9825866-9825885 | None:intergenic | 45.0% | |
| !! | TTTGCCTTCTGGAATGGATC+AGG | + | chr1_2:9825865-9825884 | Msa0055030:CDS | 45.0% |
| AGAACCTGATCCATTCCAGA+AGG | - | chr1_2:9825872-9825891 | None:intergenic | 45.0% | |
| GACTAAACTGTGAGTGAGGT+TGG | + | chr1_2:9826299-9826318 | Msa0055030:intron | 45.0% | |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr1_2:9826484-9826503 | Msa0055030:intron | 45.0% |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr1_2:9826485-9826504 | Msa0055030:intron | 45.0% |
| TTTACCTACCCCACAACTTG+AGG | + | chr1_2:9826788-9826807 | Msa0055030:intron | 45.0% | |
| ! | TCTCTGGCTAAGTTGGGTAT+AGG | - | chr1_2:9827073-9827092 | None:intergenic | 45.0% |
| ATACCCAACTTAGCCAGAGA+TGG | + | chr1_2:9827073-9827092 | Msa0055030:CDS | 45.0% | |
| CATTCCATCTCTGGCTAAGT+TGG | - | chr1_2:9827080-9827099 | None:intergenic | 45.0% | |
| CAACTTAGCCAGAGATGGAA+TGG | + | chr1_2:9827078-9827097 | Msa0055030:CDS | 45.0% | |
| AGGATCCTTCTTCATTGCCA+AGG | - | chr1_2:9827508-9827527 | None:intergenic | 45.0% | |
| ACCATGAAGAGCAGACGAAA+CGG | - | chr1_2:9827664-9827683 | None:intergenic | 45.0% | |
| CTTGTGCAGCCATTTAGTCA+AGG | + | chr1_2:9827941-9827960 | Msa0055030:intron | 45.0% | |
| CTAACACTTAAGGCCTATGC+AGG | - | chr1_2:9827978-9827997 | None:intergenic | 45.0% | |
| GTCATGAGTATTCGTGTGTG+AGG | - | chr1_2:9828140-9828159 | None:intergenic | 45.0% | |
| CACACACGAATACTCATGAC+AGG | + | chr1_2:9828140-9828159 | Msa0055030:intron | 45.0% | |
| CACTGCAAATCACTCATGTC+TGG | - | chr1_2:9828346-9828365 | None:intergenic | 45.0% | |
| ! | CAGACATGAGTGATTTGCAG+TGG | + | chr1_2:9828344-9828363 | Msa0055030:intron | 45.0% |
| ! | ATGAGTGATTTGCAGTGGCA+AGG | + | chr1_2:9828349-9828368 | Msa0055030:intron | 45.0% |
| ! | TGATTTGCAGTGGCAAGGAA+TGG | + | chr1_2:9828354-9828373 | Msa0055030:intron | 45.0% |
| GATTTGCAGTGGCAAGGAAT+GGG | + | chr1_2:9828355-9828374 | Msa0055030:intron | 45.0% | |
| CAGCGGAAGACTCTATATAG+GGG | - | chr1_2:9828638-9828657 | None:intergenic | 45.0% | |
| CACAGCGGAAGACTCTATAT+AGG | - | chr1_2:9828640-9828659 | None:intergenic | 45.0% | |
| TTGCCAAGTTCTTTGTCCCA+TGG | - | chr1_2:9828989-9829008 | None:intergenic | 45.0% | |
| TGGGTGTGACTATTCCATGA+AGG | + | chr1_2:9829033-9829052 | Msa0055030:CDS | 45.0% | |
| CATCTTCCTTCGTGTTAGTG+TGG | + | chr1_2:9829275-9829294 | Msa0055030:intron | 45.0% | |
| CAAAAACACTCTCCTGCAAG+TGG | + | chr1_2:9829660-9829679 | Msa0055030:intron | 45.0% | |
| TGTGCTAGGAGGAACAAAAG+GGG | - | chr1_2:9829775-9829794 | None:intergenic | 45.0% | |
| !! | GTACTAGTCTTTGTGCTAGG+AGG | - | chr1_2:9829786-9829805 | None:intergenic | 45.0% |
| TACTCAAATTGGTTGGGCTC+GGG | - | chr1_2:9829828-9829847 | None:intergenic | 45.0% | |
| ACTGTTTGGGAGAGTTGCTA+TGG | + | chr1_2:9829945-9829964 | Msa0055030:intron | 45.0% | |
| AGCTTGAAGGAAACGTGTGA+TGG | - | chr1_2:9830106-9830125 | None:intergenic | 45.0% | |
| TCACTAGAGTCGCCTAGAAA+AGG | - | chr1_2:9830195-9830214 | None:intergenic | 45.0% | |
| CTAGGCGACTCTAGTGAAAA+TGG | + | chr1_2:9830198-9830217 | Msa0055030:intron | 45.0% | |
| AGCTTGAAGGAAACGTGTGA+TGG | - | chr1_2:9830106-9830125 | None:intergenic | 45.0% | |
| CCGCAGCAAATATTCCAAAC+TGG | + | chr1_2:9830399-9830418 | Msa0055030:CDS | 45.0% | |
| AAGCCCTATGATGACCAGTT+TGG | - | chr1_2:9830416-9830435 | None:intergenic | 45.0% | |
| GTCATCATAGGGCTTTCTAC+AGG | + | chr1_2:9830421-9830440 | Msa0055030:exon | 45.0% | |
| ATCATAGGGCTTTCTACAGG+TGG | + | chr1_2:9830424-9830443 | Msa0055030:exon | 45.0% | |
| !!! | TTTTATATATTTATTTTTTC+TGG | + | chr1_2:9825916-9825935 | Msa0055030:intron | 5.0% |
| !!! | TTTATATATTTATTTTTTCT+GGG | + | chr1_2:9825917-9825936 | Msa0055030:intron | 5.0% |
| !! | TAAAATAAAAAATTTCAATA+TGG | - | chr1_2:9830615-9830634 | None:intergenic | 5.0% |
| AGGCGGCTATATGAAAGGGT+TGG | - | chr1_2:9825388-9825407 | None:intergenic | 50.0% | |
| GATGGTTTACGTGAAGGACC+AGG | - | chr1_2:9825593-9825612 | None:intergenic | 50.0% | |
| GTTGCTCAACCTTTGCCTTC+TGG | + | chr1_2:9825854-9825873 | Msa0055030:CDS | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr1_2:9826486-9826505 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr1_2:9826483-9826502 | Msa0055030:intron | 50.0% |
| CAACCCCACTTAGTGGGATA+AGG | - | chr1_2:9826491-9826510 | None:intergenic | 50.0% | |
| CTTATCCCACTAAGTGGGGT+TGG | + | chr1_2:9826489-9826508 | Msa0055030:intron | 50.0% | |
| TGTAGCCAACCCCACTTAGT+GGG | - | chr1_2:9826497-9826516 | None:intergenic | 50.0% | |
| ATGTAGCCAACCCCACTTAG+TGG | - | chr1_2:9826498-9826517 | None:intergenic | 50.0% | |
| ! | TTGTCCTCAAGTTGTGGGGT+AGG | - | chr1_2:9826795-9826814 | None:intergenic | 50.0% |
| GACCATGGGCATTTGTACAG+TGG | + | chr1_2:9826894-9826913 | Msa0055030:CDS | 50.0% | |
| AGCCACTGTACAAATGCCCA+TGG | - | chr1_2:9826899-9826918 | None:intergenic | 50.0% | |
| !! | GCTAAGAAAGTACTACCCCG+AGG | + | chr1_2:9827150-9827169 | Msa0055030:CDS | 50.0% |
| AAGTACTACCCCGAGGAGAA+TGG | + | chr1_2:9827157-9827176 | Msa0055030:CDS | 50.0% | |
| TTACAGGTCCATTCTCCTCG+GGG | - | chr1_2:9827168-9827187 | None:intergenic | 50.0% | |
| GTTACAGGTCCATTCTCCTC+GGG | - | chr1_2:9827169-9827188 | None:intergenic | 50.0% | |
| GGTTACAGGTCCATTCTCCT+CGG | - | chr1_2:9827170-9827189 | None:intergenic | 50.0% | |
| TCGTCTGCTCTTCATGGTGT+TGG | + | chr1_2:9827666-9827685 | Msa0055030:CDS | 50.0% | |
| GTGGTGAGTGGTGATTCTAG+AGG | + | chr1_2:9828008-9828027 | Msa0055030:intron | 50.0% | |
| CCAAGTTCTTTGTCCCATGG+TGG | - | chr1_2:9828986-9829005 | None:intergenic | 50.0% | |
| CCACCATGGGACAAAGAACT+TGG | + | chr1_2:9828983-9829002 | Msa0055030:CDS | 50.0% | |
| AATCTGACATTGCCACCACC+TGG | + | chr1_2:9829228-9829247 | Msa0055030:CDS | 50.0% | |
| !! | ACACTTTCTGGAACACCAGG+TGG | - | chr1_2:9829246-9829265 | None:intergenic | 50.0% |
| ACCTGGTGTTCCAGAAAGTG+TGG | + | chr1_2:9829245-9829264 | Msa0055030:CDS | 50.0% | |
| !! | ACCACACTTTCTGGAACACC+AGG | - | chr1_2:9829249-9829268 | None:intergenic | 50.0% |
| AGAAAGGAGGGGGAGTTATG+AGG | + | chr1_2:9829433-9829452 | Msa0055030:intron | 50.0% | |
| GTGCTAGGAGGAACAAAAGG+GGG | - | chr1_2:9829774-9829793 | None:intergenic | 50.0% | |
| !! | GCGTGCCATTTGTCACAGAT+TGG | + | chr1_2:9830474-9830493 | Msa0055030:three_prime_UTR | 50.0% |
| TGCAGCTCCCATTCCATCTC+TGG | - | chr1_2:9827089-9827108 | None:intergenic | 55.0% | |
| GCCGTTTCGTCTGCTCTTCA+TGG | + | chr1_2:9827660-9827679 | Msa0055030:CDS | 55.0% | |
| !! | CTTTCTGGAACACCAGGTGG+TGG | - | chr1_2:9829243-9829262 | None:intergenic | 55.0% |
| !!! | TTTTTGGGAGGGGGGTGTTC+TGG | + | chr1_2:9829343-9829362 | Msa0055030:intron | 55.0% |
| CTAGGAGGAACAAAAGGGGG+AGG | - | chr1_2:9829771-9829790 | None:intergenic | 55.0% | |
| CAAATTGGTTGGGCTCGGGT+TGG | - | chr1_2:9829824-9829843 | None:intergenic | 55.0% | |
| !! | ATTGGTTGGGCTCGGGTTGG+TGG | - | chr1_2:9829821-9829840 | None:intergenic | 60.0% |
| !! | TTGGGCTCGGGTTGGTGGCG+GGG | - | chr1_2:9829816-9829835 | None:intergenic | 70.0% |
| !! | GTTGGGCTCGGGTTGGTGGC+GGG | - | chr1_2:9829817-9829836 | None:intergenic | 70.0% |
| !! | GGTTGGGCTCGGGTTGGTGG+CGG | - | chr1_2:9829818-9829837 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 9825319 | 9830799 | 9825319 | ID=Msa0055030;Name=Msa0055030 |
| chr1_2 | mRNA | 9825319 | 9830799 | 9825319 | ID=Msa0055030-mRNA-1;Parent=Msa0055030;Name=Msa0055030-mRNA-1;_AED=0.08;_eAED=0.08;_QI=166|1|1|1|1|1|8|369|360 |
| chr1_2 | exon | 9825319 | 9825886 | 9825319 | ID=Msa0055030-mRNA-1:exon:3664;Parent=Msa0055030-mRNA-1 |
| chr1_2 | exon | 9826875 | 9826942 | 9826875 | ID=Msa0055030-mRNA-1:exon:3665;Parent=Msa0055030-mRNA-1 |
| chr1_2 | exon | 9827030 | 9827231 | 9827030 | ID=Msa0055030-mRNA-1:exon:3666;Parent=Msa0055030-mRNA-1 |
| chr1_2 | exon | 9827465 | 9827562 | 9827465 | ID=Msa0055030-mRNA-1:exon:3667;Parent=Msa0055030-mRNA-1 |
| chr1_2 | exon | 9827650 | 9827719 | 9827650 | ID=Msa0055030-mRNA-1:exon:3668;Parent=Msa0055030-mRNA-1 |
| chr1_2 | exon | 9828983 | 9829054 | 9828983 | ID=Msa0055030-mRNA-1:exon:3669;Parent=Msa0055030-mRNA-1 |
| chr1_2 | exon | 9829156 | 9829266 | 9829156 | ID=Msa0055030-mRNA-1:exon:3670;Parent=Msa0055030-mRNA-1 |
| chr1_2 | exon | 9830371 | 9830799 | 9830371 | ID=Msa0055030-mRNA-1:exon:3671;Parent=Msa0055030-mRNA-1 |
| chr1_2 | five_prime_UTR | 9825319 | 9825484 | 9825319 | ID=Msa0055030-mRNA-1:five_prime_utr;Parent=Msa0055030-mRNA-1 |
| chr1_2 | CDS | 9825485 | 9825886 | 9825485 | ID=Msa0055030-mRNA-1:cds;Parent=Msa0055030-mRNA-1 |
| chr1_2 | CDS | 9826875 | 9826942 | 9826875 | ID=Msa0055030-mRNA-1:cds;Parent=Msa0055030-mRNA-1 |
| chr1_2 | CDS | 9827030 | 9827231 | 9827030 | ID=Msa0055030-mRNA-1:cds;Parent=Msa0055030-mRNA-1 |
| chr1_2 | CDS | 9827465 | 9827562 | 9827465 | ID=Msa0055030-mRNA-1:cds;Parent=Msa0055030-mRNA-1 |
| chr1_2 | CDS | 9827650 | 9827719 | 9827650 | ID=Msa0055030-mRNA-1:cds;Parent=Msa0055030-mRNA-1 |
| chr1_2 | CDS | 9828983 | 9829054 | 9828983 | ID=Msa0055030-mRNA-1:cds;Parent=Msa0055030-mRNA-1 |
| chr1_2 | CDS | 9829156 | 9829266 | 9829156 | ID=Msa0055030-mRNA-1:cds;Parent=Msa0055030-mRNA-1 |
| chr1_2 | CDS | 9830371 | 9830430 | 9830371 | ID=Msa0055030-mRNA-1:cds;Parent=Msa0055030-mRNA-1 |
| chr1_2 | three_prime_UTR | 9830431 | 9830799 | 9830431 | ID=Msa0055030-mRNA-1:three_prime_utr;Parent=Msa0055030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
