Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0598310 | XP_013443594.1 | 96.319 | 163 | 6 | 0 | 1 | 163 | 1 | 163 | 4.61e-108 | 315 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0598310 | sp|B9RW00|CSPL6_RICCO | 65.031 | 163 | 57 | 0 | 1 | 163 | 1 | 163 | 9.28e-76 | 226 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0598310 | A0A072TJ77 | 96.319 | 163 | 6 | 0 | 1 | 163 | 1 | 163 | 2.20e-108 | 315 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025560 | Msa0598310 | 0.813743 | 2.192713e-51 | -8.615850e-47 |
| Msa0028690 | Msa0598310 | 0.835734 | 1.412125e-56 | -8.615850e-47 |
| Msa0119240 | Msa0598310 | 0.810622 | 1.051823e-50 | -8.615850e-47 |
| Msa0121300 | Msa0598310 | 0.824713 | 6.953814e-54 | -8.615850e-47 |
| Msa0166190 | Msa0598310 | 0.804934 | 1.701646e-49 | -8.615850e-47 |
| Msa0168750 | Msa0598310 | 0.817834 | 2.684112e-52 | -8.615850e-47 |
| Msa0418230 | Msa0598310 | 0.800820 | 1.204325e-48 | -8.615850e-47 |
| Msa0457060 | Msa0598310 | 0.803139 | 4.019404e-49 | -8.615850e-47 |
| Msa0307740 | Msa0598310 | 0.823446 | 1.379113e-53 | -8.615850e-47 |
| Msa0560060 | Msa0598310 | 0.801076 | 1.068081e-48 | -8.615850e-47 |
| Msa0567330 | Msa0598310 | 0.802594 | 5.209843e-49 | -8.615850e-47 |
| Msa0598310 | Msa0677130 | 0.811768 | 5.936283e-51 | -8.615850e-47 |
| Msa0598310 | Msa0773030 | 0.835895 | 1.285343e-56 | -8.615850e-47 |
| Msa0598310 | Msa0810330 | 0.815333 | 9.755554e-52 | -8.615850e-47 |
| Msa0598310 | Msa0831310 | 0.810260 | 1.259170e-50 | -8.615850e-47 |
| Msa0598310 | Msa0850640 | 0.827655 | 1.387788e-54 | -8.615850e-47 |
| Msa0598310 | Msa0907880 | 0.801620 | 8.263712e-49 | -8.615850e-47 |
| Msa0598310 | Msa1202800 | 0.810161 | 1.322557e-50 | -8.615850e-47 |
| Msa0598310 | Msa1211940 | 0.816445 | 5.509465e-52 | -8.615850e-47 |
| Msa0598310 | Msa1212080 | 0.814908 | 1.212522e-51 | -8.615850e-47 |
| Msa0598310 | Msa1255210 | 0.800856 | 1.184460e-48 | -8.615850e-47 |
| Msa0598310 | Msa1255690 | 0.815701 | 8.078487e-52 | -8.615850e-47 |
| Msa0598310 | Msa1295650 | 0.801517 | 8.673265e-49 | -8.615850e-47 |
| Msa0598310 | Msa1344450 | 0.806967 | 6.358862e-50 | -8.615850e-47 |
| Msa0598310 | Msa1386830 | 0.806371 | 8.499367e-50 | -8.615850e-47 |
| Msa0598310 | Msa1407810 | 0.803804 | 2.927054e-49 | -8.615850e-47 |
| Msa0598310 | Msa1413450 | 0.813282 | 2.770333e-51 | -8.615850e-47 |
| Msa0598310 | Msa1430950 | 0.812969 | 3.243446e-51 | -8.615850e-47 |
| Msa0598310 | Msa1433360 | 0.820313 | 7.325603e-53 | -8.615850e-47 |
| Msa0598310 | Msa1437780 | 0.804951 | 1.688382e-49 | -8.615850e-47 |
| Msa0598310 | Msa1448820 | 0.809515 | 1.821935e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0598310 | MtrunA17_Chr4g0021111 | 96.319 | 163 | 6 | 0 | 1 | 163 | 1 | 163 | 4.24e-112 | 315 |
| Msa0598310 | MtrunA17_Chr7g0217691 | 31.447 | 159 | 100 | 3 | 1 | 150 | 21 | 179 | 3.57e-19 | 80.1 |
| Msa0598310 | MtrunA17_Chr5g0417761 | 35.948 | 153 | 89 | 2 | 7 | 150 | 27 | 179 | 8.78e-19 | 79.0 |
| Msa0598310 | MtrunA17_Chr8g0381001 | 33.333 | 162 | 92 | 3 | 10 | 155 | 28 | 189 | 4.64e-18 | 77.0 |
| Msa0598310 | MtrunA17_Chr4g0042551 | 36.478 | 159 | 92 | 3 | 1 | 150 | 52 | 210 | 1.47e-17 | 76.3 |
| Msa0598310 | MtrunA17_Chr2g0303151 | 31.496 | 127 | 80 | 1 | 38 | 157 | 66 | 192 | 4.08e-17 | 74.7 |
| Msa0598310 | MtrunA17_Chr7g0251531 | 32.000 | 125 | 77 | 1 | 11 | 127 | 33 | 157 | 3.15e-16 | 72.0 |
| Msa0598310 | MtrunA17_Chr7g0268681 | 28.302 | 159 | 104 | 3 | 3 | 151 | 24 | 182 | 5.84e-16 | 71.6 |
| Msa0598310 | MtrunA17_Chr3g0109681 | 29.730 | 148 | 94 | 4 | 6 | 148 | 43 | 185 | 1.34e-14 | 68.6 |
| Msa0598310 | MtrunA17_Chr1g0178161 | 34.014 | 147 | 84 | 4 | 3 | 138 | 33 | 177 | 8.95e-13 | 63.2 |
| Msa0598310 | MtrunA17_Chr4g0066711 | 33.333 | 156 | 90 | 4 | 10 | 153 | 30 | 183 | 9.08e-13 | 63.2 |
| Msa0598310 | MtrunA17_Chr2g0286341 | 32.051 | 156 | 91 | 2 | 8 | 148 | 23 | 178 | 9.67e-13 | 63.2 |
| Msa0598310 | MtrunA17_Chr4g0066721 | 27.586 | 145 | 89 | 3 | 8 | 136 | 33 | 177 | 2.35e-12 | 62.0 |
| Msa0598310 | MtrunA17_Chr2g0290281 | 30.000 | 150 | 89 | 3 | 1 | 137 | 4 | 150 | 1.41e-11 | 59.7 |
| Msa0598310 | MtrunA17_Chr1g0178181 | 35.664 | 143 | 79 | 4 | 7 | 138 | 36 | 176 | 6.76e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0598310 | AT1G03700.1 | 60.000 | 160 | 64 | 0 | 4 | 163 | 5 | 164 | 7.17e-69 | 206 |
| Msa0598310 | AT4G03540.1 | 60.625 | 160 | 63 | 0 | 4 | 163 | 5 | 164 | 2.50e-58 | 179 |
| Msa0598310 | AT5G44550.1 | 36.207 | 174 | 93 | 4 | 2 | 157 | 10 | 183 | 4.82e-25 | 95.9 |
| Msa0598310 | AT5G15290.1 | 34.932 | 146 | 86 | 2 | 1 | 137 | 21 | 166 | 7.87e-23 | 89.7 |
| Msa0598310 | AT4G15610.1 | 33.557 | 149 | 84 | 3 | 3 | 137 | 24 | 171 | 2.45e-18 | 78.2 |
| Msa0598310 | AT1G14160.1 | 31.788 | 151 | 90 | 4 | 11 | 150 | 54 | 202 | 4.60e-17 | 75.1 |
| Msa0598310 | AT2G36100.1 | 36.170 | 141 | 77 | 4 | 7 | 136 | 47 | 185 | 2.18e-15 | 70.9 |
| Msa0598310 | AT2G27370.1 | 35.878 | 131 | 71 | 4 | 31 | 150 | 85 | 213 | 3.28e-14 | 67.8 |
| Msa0598310 | AT4G25040.1 | 35.971 | 139 | 85 | 2 | 12 | 146 | 21 | 159 | 3.70e-14 | 66.6 |
| Msa0598310 | AT3G06390.1 | 31.884 | 138 | 80 | 4 | 6 | 129 | 35 | 172 | 6.86e-12 | 61.2 |
| Msa0598310 | AT4G20390.1 | 32.500 | 160 | 92 | 3 | 12 | 155 | 22 | 181 | 8.89e-12 | 60.8 |
| Msa0598310 | AT5G06200.1 | 36.296 | 135 | 73 | 4 | 27 | 150 | 63 | 195 | 4.34e-11 | 59.3 |
Find 31 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACCTATTGTTAAGGTTCT+TGG | 0.122572 | 4_2:+32874756 | Msa0598310:CDS |
| TGTCATGTGATTGCAAAATT+TGG | 0.163683 | 4_2:-32876176 | None:intergenic |
| AACTCTATTGTAACTGTCTA+TGG | 0.255815 | 4_2:+32875196 | Msa0598310:CDS |
| ACTTGTGGTCGCCATGGATA+TGG | 0.315968 | 4_2:+32875261 | Msa0598310:CDS |
| GCTTTAGTCGCTAGTTTAGT+TGG | 0.362593 | 4_2:+32876202 | Msa0598310:CDS |
| CTCAAGCATCTCTGCAGCTT+TGG | 0.400682 | 4_2:+32876087 | Msa0598310:CDS |
| GTTAAGGTTCTTGGCCTTCT+CGG | 0.405136 | 4_2:+32874765 | Msa0598310:CDS |
| CTTGTCAGCAGTTGTTGTCA+TGG | 0.429083 | 4_2:+32874792 | Msa0598310:CDS |
| GTCATGTGATTGCAAAATTT+GGG | 0.430792 | 4_2:-32876175 | None:intergenic |
| GAATCTGCCACCTATTGTTA+AGG | 0.432387 | 4_2:+32874749 | Msa0598310:CDS |
| CGCCAGAGCAAGCTTTCTGC+AGG | 0.458432 | 4_2:-32875238 | None:intergenic |
| AGGCCAAGAACCTTAACAAT+AGG | 0.459316 | 4_2:-32874759 | None:intergenic |
| TTCCTGCAGAAAGCTTGCTC+TGG | 0.469885 | 4_2:+32875236 | Msa0598310:CDS |
| TTGGGAACTGAACCACAAAT+CGG | 0.471753 | 4_2:-32876157 | None:intergenic |
| TGCTGACAAGGTGGCCGAGA+AGG | 0.484142 | 4_2:-32874779 | None:intergenic |
| GCTGCTTGGCAACCGATTTG+TGG | 0.491099 | 4_2:+32876145 | Msa0598310:CDS |
| ATAGCTCAAGTGGCAAAGAA+TGG | 0.508607 | 4_2:+32876112 | Msa0598310:CDS |
| CATGACAACAACTGCTGACA+AGG | 0.513838 | 4_2:-32874791 | None:intergenic |
| AGGGTCAAGGACAGTATGAA+TGG | 0.516263 | 4_2:-32876257 | None:intergenic |
| AAGCTTGCTCTGGCGACTTG+TGG | 0.523109 | 4_2:+32875246 | Msa0598310:CDS |
| ATGGAAACAATTATGCTGCT+TGG | 0.524305 | 4_2:+32876131 | Msa0598310:CDS |
| GAGTTCACTTACTTCAAGGC+AGG | 0.535265 | 4_2:-32874877 | None:intergenic |
| TTCTCAAAAGGAGAGGGTCA+AGG | 0.544463 | 4_2:-32876270 | None:intergenic |
| CTGGCGACTTGTGGTCGCCA+TGG | 0.548545 | 4_2:+32875255 | Msa0598310:CDS |
| GTGGCAGATTCTACTAGTCT+TGG | 0.560428 | 4_2:-32874737 | None:intergenic |
| GATTCTACTAGTCTTGGCCA+TGG | 0.580820 | 4_2:-32874731 | None:intergenic |
| AGCTTTGGCTATAGCTCAAG+TGG | 0.581117 | 4_2:+32876102 | Msa0598310:CDS |
| TTAGGACATTACCATATCCA+TGG | 0.585943 | 4_2:-32875272 | None:intergenic |
| AGCTTTCTGCAGGAAGAAAG+AGG | 0.586262 | 4_2:-32875228 | None:intergenic |
| CCAAGAACCTTAACAATAGG+TGG | 0.592009 | 4_2:-32874756 | None:intergenic |
| GACAACAACTGCTGACAAGG+TGG | 0.675764 | 4_2:-32874788 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATGCTAAATTATTA+TGG | + | chr4_2:32875995-32876014 | Msa0598310:intron | 10.0% |
| !! | AAAAAAATGCTAAATTATTA+TGG | + | chr4_2:32875995-32876014 | Msa0598310:intron | 10.0% |
| !!! | GTTTTATTTTTATGGATTTA+AGG | - | chr4_2:32875717-32875736 | None:intergenic | 15.0% |
| !!! | ATTTTATATGATCAAACTTA+GGG | - | chr4_2:32875787-32875806 | None:intergenic | 15.0% |
| !!! | TATTTTATATGATCAAACTT+AGG | - | chr4_2:32875788-32875807 | None:intergenic | 15.0% |
| !!! | GTTTTATTTTTATGGATTTA+AGG | - | chr4_2:32875717-32875736 | None:intergenic | 15.0% |
| !!! | ATTTTATATGATCAAACTTA+GGG | - | chr4_2:32875787-32875806 | None:intergenic | 15.0% |
| !!! | TATTTTATATGATCAAACTT+AGG | - | chr4_2:32875788-32875807 | None:intergenic | 15.0% |
| !! | AAGAACAAATGTTTCAAATT+TGG | - | chr4_2:32875386-32875405 | None:intergenic | 20.0% |
| !!! | TGTTCTTCATGTTTTTAAAA+TGG | + | chr4_2:32875399-32875418 | Msa0598310:intron | 20.0% |
| !! | CAAACATTATATGACTTAAA+TGG | - | chr4_2:32875518-32875537 | None:intergenic | 20.0% |
| !!! | TATTTTTATGGATTTAAGGT+TGG | - | chr4_2:32875713-32875732 | None:intergenic | 20.0% |
| !!! | ATGAGAAGGTTTTATTTTTA+TGG | - | chr4_2:32875725-32875744 | None:intergenic | 20.0% |
| !! | ATGCTAAATTATTATGGTTA+TGG | + | chr4_2:32876001-32876020 | Msa0598310:intron | 20.0% |
| !!! | TTTAATTGATTTTTATGAGC+AGG | + | chr4_2:32876045-32876064 | Msa0598310:intron | 20.0% |
| !! | AAGAACAAATGTTTCAAATT+TGG | - | chr4_2:32875386-32875405 | None:intergenic | 20.0% |
| !!! | TGTTCTTCATGTTTTTAAAA+TGG | + | chr4_2:32875399-32875418 | Msa0598310:intron | 20.0% |
| !! | CAAACATTATATGACTTAAA+TGG | - | chr4_2:32875518-32875537 | None:intergenic | 20.0% |
| !!! | TATTTTTATGGATTTAAGGT+TGG | - | chr4_2:32875713-32875732 | None:intergenic | 20.0% |
| !!! | ATGAGAAGGTTTTATTTTTA+TGG | - | chr4_2:32875725-32875744 | None:intergenic | 20.0% |
| !! | ATGCTAAATTATTATGGTTA+TGG | + | chr4_2:32876001-32876020 | Msa0598310:intron | 20.0% |
| !!! | TTTAATTGATTTTTATGAGC+AGG | + | chr4_2:32876045-32876064 | Msa0598310:intron | 20.0% |
| !! | GTTAGTATATTTTGCTTCAA+AGG | - | chr4_2:32874854-32874873 | None:intergenic | 25.0% |
| ! | ATCAGTTTAGAGATGAATTA+AGG | - | chr4_2:32875139-32875158 | None:intergenic | 25.0% |
| ! | ATGATAAAGAGGTTAACTTT+AGG | - | chr4_2:32875293-32875312 | None:intergenic | 25.0% |
| !!! | TCTTCATGTTTTTAAAATGG+AGG | + | chr4_2:32875402-32875421 | Msa0598310:intron | 25.0% |
| ! | TATGAACTCTTTAACATAGT+TGG | - | chr4_2:32875560-32875579 | None:intergenic | 25.0% |
| ! | TATGTTAAAGAGTTCATACA+TGG | + | chr4_2:32875562-32875581 | Msa0598310:intron | 25.0% |
| ! | GACATAACTAGTATTCTAAT+AGG | - | chr4_2:32875832-32875851 | None:intergenic | 25.0% |
| !!! | CTAACCAATGTATGATTTTT+TGG | + | chr4_2:32875900-32875919 | Msa0598310:intron | 25.0% |
| !! | GTTAGTATATTTTGCTTCAA+AGG | - | chr4_2:32874854-32874873 | None:intergenic | 25.0% |
| ! | ATCAGTTTAGAGATGAATTA+AGG | - | chr4_2:32875139-32875158 | None:intergenic | 25.0% |
| ! | ATGATAAAGAGGTTAACTTT+AGG | - | chr4_2:32875293-32875312 | None:intergenic | 25.0% |
| !!! | TCTTCATGTTTTTAAAATGG+AGG | + | chr4_2:32875402-32875421 | Msa0598310:intron | 25.0% |
| ! | TATGAACTCTTTAACATAGT+TGG | - | chr4_2:32875560-32875579 | None:intergenic | 25.0% |
| ! | TATGTTAAAGAGTTCATACA+TGG | + | chr4_2:32875562-32875581 | Msa0598310:intron | 25.0% |
| ! | GACATAACTAGTATTCTAAT+AGG | - | chr4_2:32875832-32875851 | None:intergenic | 25.0% |
| !!! | CTAACCAATGTATGATTTTT+TGG | + | chr4_2:32875900-32875919 | Msa0598310:intron | 25.0% |
| TACATAAATGCTATGAAGCA+TGG | + | chr4_2:32874921-32874940 | Msa0598310:intron | 30.0% | |
| TCAAACAATTCCTACTTTCT+AGG | + | chr4_2:32875158-32875177 | Msa0598310:intron | 30.0% | |
| AACTCTATTGTAACTGTCTA+TGG | + | chr4_2:32875196-32875215 | Msa0598310:CDS | 30.0% | |
| ! | TGTAACTGTCTATGGATTTT+TGG | + | chr4_2:32875204-32875223 | Msa0598310:CDS | 30.0% |
| AAAGTTCTTGCATGATAAAG+AGG | - | chr4_2:32875304-32875323 | None:intergenic | 30.0% | |
| !!! | TTTTTAAAATGGAGGTGTGT+TGG | + | chr4_2:32875410-32875429 | Msa0598310:intron | 30.0% |
| ! | GCATTTTTGTTAGTTGAGTT+AGG | + | chr4_2:32875473-32875492 | Msa0598310:intron | 30.0% |
| AACTCTTTAACATAGTTGGA+TGG | - | chr4_2:32875556-32875575 | None:intergenic | 30.0% | |
| TCAGCCAAAAAATCATACAT+TGG | - | chr4_2:32875907-32875926 | None:intergenic | 30.0% | |
| AACACGTCAAACAATAAACT+TGG | - | chr4_2:32875939-32875958 | None:intergenic | 30.0% | |
| GTCATGTGATTGCAAAATTT+GGG | - | chr4_2:32876178-32876197 | None:intergenic | 30.0% | |
| TGTCATGTGATTGCAAAATT+TGG | - | chr4_2:32876179-32876198 | None:intergenic | 30.0% | |
| ! | AAATTTTGCAATCACATGAC+AGG | + | chr4_2:32876178-32876197 | Msa0598310:CDS | 30.0% |
| ! | AAGTTTTTCTCAAAAGGAGA+GGG | - | chr4_2:32876279-32876298 | None:intergenic | 30.0% |
| TACATAAATGCTATGAAGCA+TGG | + | chr4_2:32874921-32874940 | Msa0598310:intron | 30.0% | |
| TCAAACAATTCCTACTTTCT+AGG | + | chr4_2:32875158-32875177 | Msa0598310:intron | 30.0% | |
| AACTCTATTGTAACTGTCTA+TGG | + | chr4_2:32875196-32875215 | Msa0598310:CDS | 30.0% | |
| ! | TGTAACTGTCTATGGATTTT+TGG | + | chr4_2:32875204-32875223 | Msa0598310:CDS | 30.0% |
| AAAGTTCTTGCATGATAAAG+AGG | - | chr4_2:32875304-32875323 | None:intergenic | 30.0% | |
| !!! | TTTTTAAAATGGAGGTGTGT+TGG | + | chr4_2:32875410-32875429 | Msa0598310:intron | 30.0% |
| ! | GCATTTTTGTTAGTTGAGTT+AGG | + | chr4_2:32875473-32875492 | Msa0598310:intron | 30.0% |
| AACTCTTTAACATAGTTGGA+TGG | - | chr4_2:32875556-32875575 | None:intergenic | 30.0% | |
| TCAGCCAAAAAATCATACAT+TGG | - | chr4_2:32875907-32875926 | None:intergenic | 30.0% | |
| AACACGTCAAACAATAAACT+TGG | - | chr4_2:32875939-32875958 | None:intergenic | 30.0% | |
| GTCATGTGATTGCAAAATTT+GGG | - | chr4_2:32876178-32876197 | None:intergenic | 30.0% | |
| TGTCATGTGATTGCAAAATT+TGG | - | chr4_2:32876179-32876198 | None:intergenic | 30.0% | |
| ! | AAATTTTGCAATCACATGAC+AGG | + | chr4_2:32876178-32876197 | Msa0598310:CDS | 30.0% |
| ! | AAGTTTTTCTCAAAAGGAGA+GGG | - | chr4_2:32876279-32876298 | None:intergenic | 30.0% |
| !!! | TGAAGAAGCTAGCTTTTTCA+TGG | - | chr4_2:32874825-32874844 | None:intergenic | 35.0% |
| AATGGAGTTCACTTACTTCA+AGG | - | chr4_2:32874884-32874903 | None:intergenic | 35.0% | |
| TTCAGTGTAATTACAAGCGT+CGG | - | chr4_2:32875010-32875029 | None:intergenic | 35.0% | |
| ! | TCACAAAGTACCTAGAAAGT+AGG | - | chr4_2:32875171-32875190 | None:intergenic | 35.0% |
| TTAGGACATTACCATATCCA+TGG | - | chr4_2:32875275-32875294 | None:intergenic | 35.0% | |
| TAAAGTCAGACGTTATGATC+GGG | - | chr4_2:32875445-32875464 | None:intergenic | 35.0% | |
| GTAAAGTCAGACGTTATGAT+CGG | - | chr4_2:32875446-32875465 | None:intergenic | 35.0% | |
| !! | TATGGATTTAAGGTTGGTGA+TGG | - | chr4_2:32875707-32875726 | None:intergenic | 35.0% |
| GAATACTAGTTATGTCTCGA+TGG | + | chr4_2:32875836-32875855 | Msa0598310:intron | 35.0% | |
| ! | ACATTGGTTAGTCACACATT+GGG | - | chr4_2:32875891-32875910 | None:intergenic | 35.0% |
| ! | TACATTGGTTAGTCACACAT+TGG | - | chr4_2:32875892-32875911 | None:intergenic | 35.0% |
| ATGGAAACAATTATGCTGCT+TGG | + | chr4_2:32876131-32876150 | Msa0598310:CDS | 35.0% | |
| ! | CAAGTTTTTCTCAAAAGGAG+AGG | - | chr4_2:32876280-32876299 | None:intergenic | 35.0% |
| !!! | TGAAGAAGCTAGCTTTTTCA+TGG | - | chr4_2:32874825-32874844 | None:intergenic | 35.0% |
| AATGGAGTTCACTTACTTCA+AGG | - | chr4_2:32874884-32874903 | None:intergenic | 35.0% | |
| TTCAGTGTAATTACAAGCGT+CGG | - | chr4_2:32875010-32875029 | None:intergenic | 35.0% | |
| ! | TCACAAAGTACCTAGAAAGT+AGG | - | chr4_2:32875171-32875190 | None:intergenic | 35.0% |
| TTAGGACATTACCATATCCA+TGG | - | chr4_2:32875275-32875294 | None:intergenic | 35.0% | |
| TAAAGTCAGACGTTATGATC+GGG | - | chr4_2:32875445-32875464 | None:intergenic | 35.0% | |
| GTAAAGTCAGACGTTATGAT+CGG | - | chr4_2:32875446-32875465 | None:intergenic | 35.0% | |
| !! | TATGGATTTAAGGTTGGTGA+TGG | - | chr4_2:32875707-32875726 | None:intergenic | 35.0% |
| GAATACTAGTTATGTCTCGA+TGG | + | chr4_2:32875836-32875855 | Msa0598310:intron | 35.0% | |
| ! | ACATTGGTTAGTCACACATT+GGG | - | chr4_2:32875891-32875910 | None:intergenic | 35.0% |
| ! | TACATTGGTTAGTCACACAT+TGG | - | chr4_2:32875892-32875911 | None:intergenic | 35.0% |
| ATGGAAACAATTATGCTGCT+TGG | + | chr4_2:32876131-32876150 | Msa0598310:CDS | 35.0% | |
| ! | CAAGTTTTTCTCAAAAGGAG+AGG | - | chr4_2:32876280-32876299 | None:intergenic | 35.0% |
| GAATCTGCCACCTATTGTTA+AGG | + | chr4_2:32874749-32874768 | Msa0598310:CDS | 40.0% | |
| CCAAGAACCTTAACAATAGG+TGG | - | chr4_2:32874759-32874778 | None:intergenic | 40.0% | |
| CCACCTATTGTTAAGGTTCT+TGG | + | chr4_2:32874756-32874775 | Msa0598310:CDS | 40.0% | |
| AGGCCAAGAACCTTAACAAT+AGG | - | chr4_2:32874762-32874781 | None:intergenic | 40.0% | |
| CACATATATGCTATGAAGCG+AGG | - | chr4_2:32875101-32875120 | None:intergenic | 40.0% | |
| AAAGTCAGACGTTATGATCG+GGG | - | chr4_2:32875444-32875463 | None:intergenic | 40.0% | |
| ATAGCTCAAGTGGCAAAGAA+TGG | + | chr4_2:32876112-32876131 | Msa0598310:CDS | 40.0% | |
| TTGGGAACTGAACCACAAAT+CGG | - | chr4_2:32876160-32876179 | None:intergenic | 40.0% | |
| ! | GCTTTAGTCGCTAGTTTAGT+TGG | + | chr4_2:32876202-32876221 | Msa0598310:CDS | 40.0% |
| GAATCTGCCACCTATTGTTA+AGG | + | chr4_2:32874749-32874768 | Msa0598310:CDS | 40.0% | |
| CCAAGAACCTTAACAATAGG+TGG | - | chr4_2:32874759-32874778 | None:intergenic | 40.0% | |
| CCACCTATTGTTAAGGTTCT+TGG | + | chr4_2:32874756-32874775 | Msa0598310:CDS | 40.0% | |
| AGGCCAAGAACCTTAACAAT+AGG | - | chr4_2:32874762-32874781 | None:intergenic | 40.0% | |
| CACATATATGCTATGAAGCG+AGG | - | chr4_2:32875101-32875120 | None:intergenic | 40.0% | |
| AAAGTCAGACGTTATGATCG+GGG | - | chr4_2:32875444-32875463 | None:intergenic | 40.0% | |
| ATAGCTCAAGTGGCAAAGAA+TGG | + | chr4_2:32876112-32876131 | Msa0598310:CDS | 40.0% | |
| TTGGGAACTGAACCACAAAT+CGG | - | chr4_2:32876160-32876179 | None:intergenic | 40.0% | |
| ! | GCTTTAGTCGCTAGTTTAGT+TGG | + | chr4_2:32876202-32876221 | Msa0598310:CDS | 40.0% |
| ! | GTGGCAGATTCTACTAGTCT+TGG | - | chr4_2:32874740-32874759 | None:intergenic | 45.0% |
| ! | GTTAAGGTTCTTGGCCTTCT+CGG | + | chr4_2:32874765-32874784 | Msa0598310:CDS | 45.0% |
| CATGACAACAACTGCTGACA+AGG | - | chr4_2:32874794-32874813 | None:intergenic | 45.0% | |
| CTTGTCAGCAGTTGTTGTCA+TGG | + | chr4_2:32874792-32874811 | Msa0598310:CDS | 45.0% | |
| GAGTTCACTTACTTCAAGGC+AGG | - | chr4_2:32874880-32874899 | None:intergenic | 45.0% | |
| TATGAAGCATGGACACTCCT+CGG | + | chr4_2:32874932-32874951 | Msa0598310:intron | 45.0% | |
| ATGAAGCGAGGATACAGACA+CGG | - | chr4_2:32875089-32875108 | None:intergenic | 45.0% | |
| AGCTTTCTGCAGGAAGAAAG+AGG | - | chr4_2:32875231-32875250 | None:intergenic | 45.0% | |
| AGCGTGTTTGAGAGATGAGA+AGG | - | chr4_2:32875739-32875758 | None:intergenic | 45.0% | |
| TCGATGGAGATTGAGTCTAC+AGG | + | chr4_2:32875852-32875871 | Msa0598310:intron | 45.0% | |
| ! | AGCTTTGGCTATAGCTCAAG+TGG | + | chr4_2:32876102-32876121 | Msa0598310:CDS | 45.0% |
| AGGGTCAAGGACAGTATGAA+TGG | - | chr4_2:32876260-32876279 | None:intergenic | 45.0% | |
| TTCTCAAAAGGAGAGGGTCA+AGG | - | chr4_2:32876273-32876292 | None:intergenic | 45.0% | |
| ! | GTGGCAGATTCTACTAGTCT+TGG | - | chr4_2:32874740-32874759 | None:intergenic | 45.0% |
| ! | GTTAAGGTTCTTGGCCTTCT+CGG | + | chr4_2:32874765-32874784 | Msa0598310:CDS | 45.0% |
| CATGACAACAACTGCTGACA+AGG | - | chr4_2:32874794-32874813 | None:intergenic | 45.0% | |
| CTTGTCAGCAGTTGTTGTCA+TGG | + | chr4_2:32874792-32874811 | Msa0598310:CDS | 45.0% | |
| GAGTTCACTTACTTCAAGGC+AGG | - | chr4_2:32874880-32874899 | None:intergenic | 45.0% | |
| TATGAAGCATGGACACTCCT+CGG | + | chr4_2:32874932-32874951 | Msa0598310:intron | 45.0% | |
| ATGAAGCGAGGATACAGACA+CGG | - | chr4_2:32875089-32875108 | None:intergenic | 45.0% | |
| AGCTTTCTGCAGGAAGAAAG+AGG | - | chr4_2:32875231-32875250 | None:intergenic | 45.0% | |
| AGCGTGTTTGAGAGATGAGA+AGG | - | chr4_2:32875739-32875758 | None:intergenic | 45.0% | |
| TCGATGGAGATTGAGTCTAC+AGG | + | chr4_2:32875852-32875871 | Msa0598310:intron | 45.0% | |
| ! | AGCTTTGGCTATAGCTCAAG+TGG | + | chr4_2:32876102-32876121 | Msa0598310:CDS | 45.0% |
| AGGGTCAAGGACAGTATGAA+TGG | - | chr4_2:32876260-32876279 | None:intergenic | 45.0% | |
| TTCTCAAAAGGAGAGGGTCA+AGG | - | chr4_2:32876273-32876292 | None:intergenic | 45.0% | |
| !! | AATAATTTAAATAAAACAAA+TGG | - | chr4_2:32874902-32874921 | None:intergenic | 5.0% |
| !! | AATAATTTAAATAAAACAAA+TGG | - | chr4_2:32874902-32874921 | None:intergenic | 5.0% |
| GACAACAACTGCTGACAAGG+TGG | - | chr4_2:32874791-32874810 | None:intergenic | 50.0% | |
| !! | TACAAGCGTCGGTGTCGTAT+CGG | - | chr4_2:32874999-32875018 | None:intergenic | 50.0% |
| ! | TTCCTGCAGAAAGCTTGCTC+TGG | + | chr4_2:32875236-32875255 | Msa0598310:CDS | 50.0% |
| ACTTGTGGTCGCCATGGATA+TGG | + | chr4_2:32875261-32875280 | Msa0598310:CDS | 50.0% | |
| CTCAAGCATCTCTGCAGCTT+TGG | + | chr4_2:32876087-32876106 | Msa0598310:CDS | 50.0% | |
| GACAACAACTGCTGACAAGG+TGG | - | chr4_2:32874791-32874810 | None:intergenic | 50.0% | |
| !! | TACAAGCGTCGGTGTCGTAT+CGG | - | chr4_2:32874999-32875018 | None:intergenic | 50.0% |
| ! | TTCCTGCAGAAAGCTTGCTC+TGG | + | chr4_2:32875236-32875255 | Msa0598310:CDS | 50.0% |
| ACTTGTGGTCGCCATGGATA+TGG | + | chr4_2:32875261-32875280 | Msa0598310:CDS | 50.0% | |
| CTCAAGCATCTCTGCAGCTT+TGG | + | chr4_2:32876087-32876106 | Msa0598310:CDS | 50.0% | |
| GCATGGACACTCCTCGGATT+AGG | + | chr4_2:32874938-32874957 | Msa0598310:intron | 55.0% | |
| ATACGACACGTGTCCGACAC+CGG | - | chr4_2:32874970-32874989 | None:intergenic | 55.0% | |
| GTCAGTGTCCATGTCGTGTC+TGG | + | chr4_2:32875060-32875079 | Msa0598310:intron | 55.0% | |
| ! | AAGCTTGCTCTGGCGACTTG+TGG | + | chr4_2:32875246-32875265 | Msa0598310:CDS | 55.0% |
| !! | GCTGCTTGGCAACCGATTTG+TGG | + | chr4_2:32876145-32876164 | Msa0598310:CDS | 55.0% |
| GCATGGACACTCCTCGGATT+AGG | + | chr4_2:32874938-32874957 | Msa0598310:intron | 55.0% | |
| ATACGACACGTGTCCGACAC+CGG | - | chr4_2:32874970-32874989 | None:intergenic | 55.0% | |
| GTCAGTGTCCATGTCGTGTC+TGG | + | chr4_2:32875060-32875079 | Msa0598310:intron | 55.0% | |
| ! | AAGCTTGCTCTGGCGACTTG+TGG | + | chr4_2:32875246-32875265 | Msa0598310:CDS | 55.0% |
| !! | GCTGCTTGGCAACCGATTTG+TGG | + | chr4_2:32876145-32876164 | Msa0598310:CDS | 55.0% |
| TGCTGACAAGGTGGCCGAGA+AGG | - | chr4_2:32874782-32874801 | None:intergenic | 60.0% | |
| ! | TCCTCGGATTAGGCGTGTCC+CGG | + | chr4_2:32874948-32874967 | Msa0598310:intron | 60.0% |
| GATTAGGCGTGTCCCGGTGT+CGG | + | chr4_2:32874954-32874973 | Msa0598310:intron | 60.0% | |
| TACGACACGTGTCCGACACC+GGG | - | chr4_2:32874969-32874988 | None:intergenic | 60.0% | |
| !! | CGTCGGTGTCGTATCGGTGT+CGG | - | chr4_2:32874993-32875012 | None:intergenic | 60.0% |
| CACGGACACCAGACACGACA+TGG | - | chr4_2:32875071-32875090 | None:intergenic | 60.0% | |
| CGCCAGAGCAAGCTTTCTGC+AGG | - | chr4_2:32875241-32875260 | None:intergenic | 60.0% | |
| TGCTGACAAGGTGGCCGAGA+AGG | - | chr4_2:32874782-32874801 | None:intergenic | 60.0% | |
| ! | TCCTCGGATTAGGCGTGTCC+CGG | + | chr4_2:32874948-32874967 | Msa0598310:intron | 60.0% |
| GATTAGGCGTGTCCCGGTGT+CGG | + | chr4_2:32874954-32874973 | Msa0598310:intron | 60.0% | |
| TACGACACGTGTCCGACACC+GGG | - | chr4_2:32874969-32874988 | None:intergenic | 60.0% | |
| !! | CGTCGGTGTCGTATCGGTGT+CGG | - | chr4_2:32874993-32875012 | None:intergenic | 60.0% |
| CACGGACACCAGACACGACA+TGG | - | chr4_2:32875071-32875090 | None:intergenic | 60.0% | |
| CGCCAGAGCAAGCTTTCTGC+AGG | - | chr4_2:32875241-32875260 | None:intergenic | 60.0% | |
| ACCGGGACACGCCTAATCCG+AGG | - | chr4_2:32874952-32874971 | None:intergenic | 65.0% | |
| CTGGCGACTTGTGGTCGCCA+TGG | + | chr4_2:32875255-32875274 | Msa0598310:CDS | 65.0% | |
| ACCGGGACACGCCTAATCCG+AGG | - | chr4_2:32874952-32874971 | None:intergenic | 65.0% | |
| CTGGCGACTTGTGGTCGCCA+TGG | + | chr4_2:32875255-32875274 | Msa0598310:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 32874733 | 32876300 | 32874733 | ID=Msa0598310;Name=Msa0598310 |
| chr4_2 | mRNA | 32874733 | 32876300 | 32874733 | ID=Msa0598310-mRNA-1;Parent=Msa0598310;Name=Msa0598310-mRNA-1;_AED=0.04;_eAED=0.05;_QI=0|0|0|1|1|1|3|0|163 |
| chr4_2 | exon | 32874733 | 32874887 | 32874733 | ID=Msa0598310-mRNA-1:exon:7975;Parent=Msa0598310-mRNA-1 |
| chr4_2 | exon | 32875180 | 32875282 | 32875180 | ID=Msa0598310-mRNA-1:exon:7976;Parent=Msa0598310-mRNA-1 |
| chr4_2 | exon | 32876067 | 32876300 | 32876067 | ID=Msa0598310-mRNA-1:exon:7977;Parent=Msa0598310-mRNA-1 |
| chr4_2 | CDS | 32874733 | 32874887 | 32874733 | ID=Msa0598310-mRNA-1:cds;Parent=Msa0598310-mRNA-1 |
| chr4_2 | CDS | 32875180 | 32875282 | 32875180 | ID=Msa0598310-mRNA-1:cds;Parent=Msa0598310-mRNA-1 |
| chr4_2 | CDS | 32876067 | 32876300 | 32876067 | ID=Msa0598310-mRNA-1:cds;Parent=Msa0598310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
