AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0831310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0831310 MtrunA17_Chr5g0395001 95.238 168 8 0 1 168 1 168 5.33e-109 308
Msa0831310 MtrunA17_Chr1g0205201 65.455 165 36 3 1 164 1 145 2.56e-65 197
Msa0831310 MtrunA17_Chr1g0185321 53.631 179 66 3 1 162 1 179 2.62e-38 129
Msa0831310 MtrunA17_Chr7g0260061 51.701 147 64 4 1 141 1 146 5.75e-38 128
Msa0831310 MtrunA17_Chr1g0205181 49.333 150 53 4 1 149 1 128 8.52e-37 124
Msa0831310 MtrunA17_Chr1g0205191 60.748 107 40 1 1 107 1 105 2.28e-31 109
Msa0831310 MtrunA17_Chr1g0201291 57.955 88 34 2 1 87 1 86 9.76e-25 91.7
Msa0831310 MtrunA17_Chr3g0118471 42.353 85 46 2 24 105 46 130 7.93e-16 71.6
Msa0831310 MtrunA17_Chr5g0429901 34.127 126 69 4 7 119 4 128 1.41e-15 70.9
Msa0831310 MtrunA17_Chr2g0278971 35.606 132 73 5 7 127 48 178 1.23e-14 68.6
Msa0831310 MtrunA17_Chr2g0278981 35.714 98 60 2 25 120 32 128 1.44e-12 62.8
Msa0831310 MtrunA17_Chr6g0484651 39.437 71 42 1 28 98 43 112 7.13e-12 59.3
Msa0831310 MtrunA17_Chr8g0378461 31.092 119 72 3 25 134 33 150 1.61e-11 60.1
Msa0831310 MtrunA17_Chr3g0121381 37.838 74 45 1 25 97 28 101 1.83e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0831310 AT3G22600.1 53.757 173 67 6 5 168 2 170 1.52e-50 160
Msa0831310 AT4G14815.1 47.500 160 68 4 5 163 2 146 1.29e-38 129
Msa0831310 AT2G48130.2 41.714 175 87 5 1 162 1 173 7.96e-32 113
Msa0831310 AT2G48130.6 41.714 175 87 5 1 162 1 173 7.96e-32 113
Msa0831310 AT2G48130.4 41.714 175 87 5 1 162 1 173 7.96e-32 113
Msa0831310 AT2G48130.5 41.714 175 87 5 1 162 1 173 7.96e-32 113
Msa0831310 AT2G48130.1 41.714 175 87 5 1 162 1 173 7.96e-32 113
Msa0831310 AT2G48130.3 41.714 175 87 5 1 162 1 173 7.96e-32 113
Msa0831310 AT1G03103.1 41.520 171 83 6 6 161 1 169 8.79e-28 102
Msa0831310 AT5G09370.1 40.000 90 50 2 26 113 26 113 3.71e-17 74.3
Msa0831310 AT5G09370.3 40.000 90 50 2 26 113 26 113 3.74e-17 74.3
Msa0831310 AT5G09370.2 40.000 90 50 2 26 113 26 113 3.93e-17 73.6
Msa0831310 AT3G43720.2 36.306 157 76 5 21 160 31 180 1.52e-16 73.6
Msa0831310 AT3G43720.1 36.076 158 77 5 21 160 31 182 5.79e-16 72.0
Msa0831310 AT1G55260.2 25.275 182 116 5 1 164 44 223 1.16e-14 69.3
Msa0831310 AT2G13820.1 27.711 166 112 5 1 161 1 163 1.47e-14 67.8
Msa0831310 AT2G13820.3 27.711 166 112 5 1 161 13 175 1.76e-14 68.2
Msa0831310 AT1G55260.1 28.205 156 104 4 1 149 44 198 3.94e-14 67.8
Msa0831310 AT4G08670.1 35.185 162 85 7 26 168 46 206 7.42e-14 67.0
Msa0831310 AT2G13820.2 31.034 116 74 4 1 113 1 113 1.21e-13 64.7
Msa0831310 AT2G44290.1 31.875 160 91 6 6 149 9 166 6.65e-13 64.3
Msa0831310 AT2G48140.1 35.659 129 65 5 8 129 4 121 4.41e-12 62.0
Msa0831310 AT2G48140.2 36.842 114 64 4 8 114 4 116 8.97e-12 59.7
Msa0831310 AT3G22580.1 38.739 111 56 4 5 105 2 110 2.14e-11 58.5
Msa0831310 AT2G44300.1 39.726 73 43 1 25 96 32 104 4.65e-11 59.3
Msa0831310 AT5G64080.2 30.282 142 87 6 28 163 43 178 9.85e-11 57.8

Find 72 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTCCATTGGTTCTTATTT+TGG 0.163593 5_4:-4334967 Msa0831310:CDS
CTGACAATATTAAGTTGATA+TGG 0.277856 5_4:+4335939 None:intergenic
CAGCAAAATGAATATGAGTT+TGG 0.304193 5_4:-4335754 Msa0831310:CDS
TGTGAAGACAATGGTGGTTT+TGG 0.312241 5_4:+4335874 None:intergenic
AATGAATATGAGTTTGGTTT+TGG 0.324175 5_4:-4335748 Msa0831310:CDS
GTTCCTGCTGGTGAGTCTGC+TGG 0.326138 5_4:+4335190 None:intergenic
GTACCTGATGGAACTGAGTT+TGG 0.355549 5_4:+4335154 None:intergenic
TTCCTGCTGGTGAGTCTGCT+GGG 0.376602 5_4:+4335191 None:intergenic
AGTCAGTGTAAAACTAATAA+TGG 0.381064 5_4:-4335456 Msa0831310:intron
TACTGATTCTTTAATCAGTT+GGG 0.384390 5_4:-4334915 Msa0831310:three_prime_UTR
AGTTCCTCAACCCCGTCTTC+AGG 0.390443 5_4:-4335630 Msa0831310:CDS
TTGAAATTTGTGTGTTATCA+TGG 0.392639 5_4:-4334715 Msa0831310:three_prime_UTR
GCCTATGTCAGGTTCTCGGC+GGG 0.418113 5_4:-4335563 Msa0831310:CDS
CAAAAGAATAGCATTTCAAA+TGG 0.424229 5_4:+4334889 None:intergenic
ATCAAAGTCCCTTGTGTTGA+AGG 0.438498 5_4:-4334829 Msa0831310:three_prime_UTR
GACTCTGCTTCTGTTCCTGC+TGG 0.439322 5_4:+4335178 None:intergenic
TTTGCATAAAACAATTCAAA+TGG 0.442092 5_4:-4335781 Msa0831310:exon
AGCCTTGCCTGGTGCTTGCA+AGG 0.452642 5_4:-4335496 Msa0831310:CDS
TCCATCACCGGTTGAGGGAG+TGG 0.468250 5_4:+4335019 None:intergenic
TCAAAATCCACTCCCTCAAC+CGG 0.469317 5_4:-4335026 Msa0831310:CDS
ATACTGATTCTTTAATCAGT+TGG 0.471273 5_4:-4334916 Msa0831310:three_prime_UTR
GGATGATCCATCACCGGTTG+AGG 0.472460 5_4:+4335013 None:intergenic
CAGCTTGATTGAATTTCCAC+TGG 0.474292 5_4:+4334992 None:intergenic
GTTTGCACCTTGCAAGCACC+AGG 0.476162 5_4:+4335489 None:intergenic
AATCAAGCTGTCAATTCCAT+TGG 0.482271 5_4:-4334979 Msa0831310:CDS
TTGAGCAGCATCCTGAAGAC+GGG 0.489604 5_4:+4335619 None:intergenic
TCCACTCCCTCAACCGGTGA+TGG 0.490607 5_4:-4335020 Msa0831310:CDS
TATAGTTAAGACAAGGTGAT+AGG 0.493717 5_4:+4335661 None:intergenic
CTATGTCAGGTTCTCGGCGG+GGG 0.499514 5_4:-4335561 Msa0831310:CDS
ACTCAGGCTCTAGCCTTGCC+TGG 0.500358 5_4:-4335507 Msa0831310:CDS
TGACAATATTAAGTTGATAT+GGG 0.511964 5_4:+4335940 None:intergenic
CACCTTGCAAGCACCAGGCA+AGG 0.514952 5_4:+4335494 None:intergenic
CTATGCCTATGTCAGGTTCT+CGG 0.519779 5_4:-4335567 Msa0831310:CDS
TTTACACTGACTCGTGGGTG+GGG 0.525246 5_4:+4335467 None:intergenic
ATCGAGTTGTACAAATGTCT+TGG 0.528842 5_4:-4335688 Msa0831310:CDS
AAAAGAATAGCATTTCAAAT+GGG 0.533508 5_4:+4334890 None:intergenic
TCTCCAAACTCAGTTCCATC+AGG 0.538578 5_4:-4335157 Msa0831310:intron
TCAAAGTCCCTTGTGTTGAA+GGG 0.544913 5_4:-4334828 Msa0831310:three_prime_UTR
GAAAACCTTGGTATAGACCT+TGG 0.545588 5_4:+4335810 None:intergenic
ACAACCACTATGCCTATGTC+AGG 0.550990 5_4:-4335574 Msa0831310:CDS
CCTTGTCTTAACTATATCAC+AGG 0.552514 5_4:-4335654 Msa0831310:CDS
TGTTCAGAAAACTGAGGCAT+AGG 0.555263 5_4:+4334938 None:intergenic
TCCACTGGATGATCCATCAC+CGG 0.557164 5_4:+4335007 None:intergenic
TTTGAGCAGCATCCTGAAGA+CGG 0.563609 5_4:+4335618 None:intergenic
TGCAAATGTGTTGAAAACCT+TGG 0.565712 5_4:+4335798 None:intergenic
GATGATCCATCACCGGTTGA+GGG 0.571557 5_4:+4335014 None:intergenic
AAAATCACGTAACCCAATAG+AGG 0.575709 5_4:+4334784 None:intergenic
GCATCCTGAAGACGGGGTTG+AGG 0.576075 5_4:+4335626 None:intergenic
TCCCCAGCAGACTCACCAGC+AGG 0.577866 5_4:-4335193 Msa0831310:CDS
CTGCTCAAACCTTGCCAGTG+TGG 0.578926 5_4:-4335604 Msa0831310:CDS
GTGAATTCACCACACTGGCA+AGG 0.582240 5_4:+4335595 None:intergenic
TCTCCTTTATGAATAAAACA+TGG 0.582589 5_4:-4334739 Msa0831310:three_prime_UTR
GTAATCGCAATGTTGTGCGC+TGG 0.583284 5_4:-4335723 Msa0831310:CDS
GCTGCCAAAATAAGAACCAA+TGG 0.586818 5_4:+4334963 None:intergenic
TCCTGCTGGTGAGTCTGCTG+GGG 0.602035 5_4:+4335192 None:intergenic
TGCCTATGTCAGGTTCTCGG+CGG 0.603440 5_4:-4335564 Msa0831310:CDS
CCCCGCCGAGAACCTGACAT+AGG 0.604243 5_4:+4335562 None:intergenic
AATCAGCATCAATCAAACTC+AGG 0.612879 5_4:-4335523 Msa0831310:CDS
AGAACCTGACATAGGCATAG+TGG 0.618190 5_4:+4335570 None:intergenic
ATATCTCGTTAGATAGTAGG+AGG 0.621459 5_4:-4335972 None:intergenic
CCTATGTCAGGTTCTCGGCG+GGG 0.623545 5_4:-4335562 Msa0831310:CDS
AGACTGAACCCTTCAACACA+AGG 0.628092 5_4:+4334820 None:intergenic
GACTGAACCCTTCAACACAA+GGG 0.644958 5_4:+4334821 None:intergenic
ACCGGTGATGGATCATCCAG+TGG 0.660594 5_4:-4335008 Msa0831310:CDS
TGTTTACTCTGTGAAGACAA+TGG 0.668904 5_4:+4335865 None:intergenic
CCTGTGATATAGTTAAGACA+AGG 0.672182 5_4:+4335654 None:intergenic
CTTGTCTTAACTATATCACA+GGG 0.678400 5_4:-4335653 Msa0831310:CDS
ATATACCAAGGTCTATACCA+AGG 0.695506 5_4:-4335815 Msa0831310:five_prime_UTR
TGGTTGTGAATTCACCACAC+TGG 0.698930 5_4:+4335590 None:intergenic
TGAGCAGCATCCTGAAGACG+GGG 0.700847 5_4:+4335620 None:intergenic
TTACTCTGTGAAGACAATGG+TGG 0.704767 5_4:+4335868 None:intergenic
TCAGTATGTTCAGAAAACTG+AGG 0.728921 5_4:+4334932 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATATAGTTTAGAATAT+GGG + chr5_4:4335397-4335416 None:intergenic 10.0%
!!! AAATATATAGTTTAGAATAT+GGG + chr5_4:4335397-4335416 None:intergenic 10.0%
!!! GAAATATATAGTTTAGAATA+TGG + chr5_4:4335398-4335417 None:intergenic 15.0%
!!! GAAATATATAGTTTAGAATA+TGG + chr5_4:4335398-4335417 None:intergenic 15.0%
!!! TGACAATATTAAGTTGATAT+GGG + chr5_4:4334711-4334730 None:intergenic 20.0%
!! TTTGCATAAAACAATTCAAA+TGG - chr5_4:4334867-4334886 Msa0831310:three_prime_UTR 20.0%
!! CAAATGAATTTCAACTTAAA+TGG + chr5_4:4335591-4335610 None:intergenic 20.0%
!! AAAAGAATAGCATTTCAAAT+GGG + chr5_4:4335761-4335780 None:intergenic 20.0%
!!! AATCCATGTTTTATTCATAA+AGG + chr5_4:4335915-4335934 None:intergenic 20.0%
!!! TGACAATATTAAGTTGATAT+GGG + chr5_4:4334711-4334730 None:intergenic 20.0%
!! TTTGCATAAAACAATTCAAA+TGG - chr5_4:4334867-4334886 Msa0831310:three_prime_UTR 20.0%
!! CAAATGAATTTCAACTTAAA+TGG + chr5_4:4335591-4335610 None:intergenic 20.0%
!! AAAAGAATAGCATTTCAAAT+GGG + chr5_4:4335761-4335780 None:intergenic 20.0%
!!! AATCCATGTTTTATTCATAA+AGG + chr5_4:4335915-4335934 None:intergenic 20.0%
!!! CTGACAATATTAAGTTGATA+TGG + chr5_4:4334712-4334731 None:intergenic 25.0%
! AACCAAAAAAGAATATACCA+AGG - chr5_4:4334821-4334840 Msa0831310:three_prime_UTR 25.0%
!!! AATGAATATGAGTTTGGTTT+TGG - chr5_4:4334900-4334919 Msa0831310:three_prime_UTR 25.0%
! AGTCAGTGTAAAACTAATAA+TGG - chr5_4:4335192-4335211 Msa0831310:CDS 25.0%
! TCTCAATGTTCATATAGTTA+GGG + chr5_4:4335285-4335304 None:intergenic 25.0%
! ATCTCAATGTTCATATAGTT+AGG + chr5_4:4335286-4335305 None:intergenic 25.0%
!!! ACTTATCTTTTTGAGTATCA+AGG + chr5_4:4335370-4335389 None:intergenic 25.0%
! TTCAACTTAAATGGTTAACA+AGG + chr5_4:4335582-4335601 None:intergenic 25.0%
!!! TTAAGTTGAAATTCATTTGC+AGG - chr5_4:4335592-4335611 Msa0831310:CDS 25.0%
!!! AATTCCATTGGTTCTTATTT+TGG - chr5_4:4335681-4335700 Msa0831310:CDS 25.0%
!!! ATACTGATTCTTTAATCAGT+TGG - chr5_4:4335732-4335751 Msa0831310:CDS 25.0%
!!! TACTGATTCTTTAATCAGTT+GGG - chr5_4:4335733-4335752 Msa0831310:CDS 25.0%
! CAAAAGAATAGCATTTCAAA+TGG + chr5_4:4335762-4335781 None:intergenic 25.0%
! TCTCCTTTATGAATAAAACA+TGG - chr5_4:4335909-4335928 Msa0831310:five_prime_UTR 25.0%
! TTGAAATTTGTGTGTTATCA+TGG - chr5_4:4335933-4335952 Msa0831310:five_prime_UTR 25.0%
!!! CTGACAATATTAAGTTGATA+TGG + chr5_4:4334712-4334731 None:intergenic 25.0%
! AACCAAAAAAGAATATACCA+AGG - chr5_4:4334821-4334840 Msa0831310:three_prime_UTR 25.0%
!!! AATGAATATGAGTTTGGTTT+TGG - chr5_4:4334900-4334919 Msa0831310:three_prime_UTR 25.0%
! AGTCAGTGTAAAACTAATAA+TGG - chr5_4:4335192-4335211 Msa0831310:CDS 25.0%
! TCTCAATGTTCATATAGTTA+GGG + chr5_4:4335285-4335304 None:intergenic 25.0%
! ATCTCAATGTTCATATAGTT+AGG + chr5_4:4335286-4335305 None:intergenic 25.0%
!!! ACTTATCTTTTTGAGTATCA+AGG + chr5_4:4335370-4335389 None:intergenic 25.0%
! TTCAACTTAAATGGTTAACA+AGG + chr5_4:4335582-4335601 None:intergenic 25.0%
!!! TTAAGTTGAAATTCATTTGC+AGG - chr5_4:4335592-4335611 Msa0831310:CDS 25.0%
!!! AATTCCATTGGTTCTTATTT+TGG - chr5_4:4335681-4335700 Msa0831310:CDS 25.0%
!!! ATACTGATTCTTTAATCAGT+TGG - chr5_4:4335732-4335751 Msa0831310:CDS 25.0%
!!! TACTGATTCTTTAATCAGTT+GGG - chr5_4:4335733-4335752 Msa0831310:CDS 25.0%
! CAAAAGAATAGCATTTCAAA+TGG + chr5_4:4335762-4335781 None:intergenic 25.0%
! TCTCCTTTATGAATAAAACA+TGG - chr5_4:4335909-4335928 Msa0831310:five_prime_UTR 25.0%
! TTGAAATTTGTGTGTTATCA+TGG - chr5_4:4335933-4335952 Msa0831310:five_prime_UTR 25.0%
!!! GACCTTGGTATATTCTTTTT+TGG + chr5_4:4334826-4334845 None:intergenic 30.0%
CAGCAAAATGAATATGAGTT+TGG - chr5_4:4334894-4334913 Msa0831310:three_prime_UTR 30.0%
TATAGTTAAGACAAGGTGAT+AGG + chr5_4:4334990-4335009 None:intergenic 30.0%
CTTGTCTTAACTATATCACA+GGG - chr5_4:4334995-4335014 Msa0831310:CDS 30.0%
AATGTTCATATAGTTAGGGT+TGG + chr5_4:4335281-4335300 None:intergenic 30.0%
! ATTCATTTTGTGACCTCTAT+TGG - chr5_4:4335851-4335870 Msa0831310:five_prime_UTR 30.0%
! TTCATTTTGTGACCTCTATT+GGG - chr5_4:4335852-4335871 Msa0831310:five_prime_UTR 30.0%
! ACGTGATTTTGTATTATGAG+AGG - chr5_4:4335877-4335896 Msa0831310:five_prime_UTR 30.0%
! CGTGATTTTGTATTATGAGA+GGG - chr5_4:4335878-4335897 Msa0831310:five_prime_UTR 30.0%
!!! GACCTTGGTATATTCTTTTT+TGG + chr5_4:4334826-4334845 None:intergenic 30.0%
CAGCAAAATGAATATGAGTT+TGG - chr5_4:4334894-4334913 Msa0831310:three_prime_UTR 30.0%
TATAGTTAAGACAAGGTGAT+AGG + chr5_4:4334990-4335009 None:intergenic 30.0%
CTTGTCTTAACTATATCACA+GGG - chr5_4:4334995-4335014 Msa0831310:CDS 30.0%
AATGTTCATATAGTTAGGGT+TGG + chr5_4:4335281-4335300 None:intergenic 30.0%
! ATTCATTTTGTGACCTCTAT+TGG - chr5_4:4335851-4335870 Msa0831310:five_prime_UTR 30.0%
! TTCATTTTGTGACCTCTATT+GGG - chr5_4:4335852-4335871 Msa0831310:five_prime_UTR 30.0%
! ACGTGATTTTGTATTATGAG+AGG - chr5_4:4335877-4335896 Msa0831310:five_prime_UTR 30.0%
! CGTGATTTTGTATTATGAGA+GGG - chr5_4:4335878-4335897 Msa0831310:five_prime_UTR 30.0%
!!! GTTTTGGAAGAACAATGTCT+AGG + chr5_4:4334761-4334780 None:intergenic 35.0%
TGTTTACTCTGTGAAGACAA+TGG + chr5_4:4334786-4334805 None:intergenic 35.0%
ATATACCAAGGTCTATACCA+AGG - chr5_4:4334833-4334852 Msa0831310:three_prime_UTR 35.0%
TGCAAATGTGTTGAAAACCT+TGG + chr5_4:4334853-4334872 None:intergenic 35.0%
! ATCGAGTTGTACAAATGTCT+TGG - chr5_4:4334960-4334979 Msa0831310:CDS 35.0%
CCTGTGATATAGTTAAGACA+AGG + chr5_4:4334997-4335016 None:intergenic 35.0%
CCTTGTCTTAACTATATCAC+AGG - chr5_4:4334994-4335013 Msa0831310:CDS 35.0%
AATCAGCATCAATCAAACTC+AGG - chr5_4:4335125-4335144 Msa0831310:intron 35.0%
!!! TTAGTTTTACACTGACTCGT+GGG + chr5_4:4335189-4335208 None:intergenic 35.0%
!!! ATTAGTTTTACACTGACTCG+TGG + chr5_4:4335190-4335209 None:intergenic 35.0%
TCCATCAGGTACTAACATAT+TGG - chr5_4:4335505-4335524 Msa0831310:CDS 35.0%
CCATCAGGTACTAACATATT+GGG - chr5_4:4335506-4335525 Msa0831310:CDS 35.0%
CATCAGGTACTAACATATTG+GGG - chr5_4:4335507-4335526 Msa0831310:CDS 35.0%
TGATCATCCAATTTGAACCT+TGG - chr5_4:4335556-4335575 Msa0831310:CDS 35.0%
TTAAATGGTTAACAAGGCCA+AGG + chr5_4:4335576-4335595 None:intergenic 35.0%
TGAAATTCATTTGCAGGAAC+CGG - chr5_4:4335598-4335617 Msa0831310:CDS 35.0%
AATCAAGCTGTCAATTCCAT+TGG - chr5_4:4335669-4335688 Msa0831310:CDS 35.0%
TCAGTATGTTCAGAAAACTG+AGG + chr5_4:4335719-4335738 None:intergenic 35.0%
AAAATCACGTAACCCAATAG+AGG + chr5_4:4335867-4335886 None:intergenic 35.0%
TTTATGACAACCACTGAAAG+AGG - chr5_4:4335958-4335977 Msa0831310:five_prime_UTR 35.0%
!!! GTTTTGGAAGAACAATGTCT+AGG + chr5_4:4334761-4334780 None:intergenic 35.0%
TGTTTACTCTGTGAAGACAA+TGG + chr5_4:4334786-4334805 None:intergenic 35.0%
ATATACCAAGGTCTATACCA+AGG - chr5_4:4334833-4334852 Msa0831310:three_prime_UTR 35.0%
TGCAAATGTGTTGAAAACCT+TGG + chr5_4:4334853-4334872 None:intergenic 35.0%
! ATCGAGTTGTACAAATGTCT+TGG - chr5_4:4334960-4334979 Msa0831310:CDS 35.0%
CCTGTGATATAGTTAAGACA+AGG + chr5_4:4334997-4335016 None:intergenic 35.0%
CCTTGTCTTAACTATATCAC+AGG - chr5_4:4334994-4335013 Msa0831310:CDS 35.0%
AATCAGCATCAATCAAACTC+AGG - chr5_4:4335125-4335144 Msa0831310:intron 35.0%
!!! TTAGTTTTACACTGACTCGT+GGG + chr5_4:4335189-4335208 None:intergenic 35.0%
!!! ATTAGTTTTACACTGACTCG+TGG + chr5_4:4335190-4335209 None:intergenic 35.0%
TCCATCAGGTACTAACATAT+TGG - chr5_4:4335505-4335524 Msa0831310:CDS 35.0%
CCATCAGGTACTAACATATT+GGG - chr5_4:4335506-4335525 Msa0831310:CDS 35.0%
CATCAGGTACTAACATATTG+GGG - chr5_4:4335507-4335526 Msa0831310:CDS 35.0%
TGATCATCCAATTTGAACCT+TGG - chr5_4:4335556-4335575 Msa0831310:CDS 35.0%
TTAAATGGTTAACAAGGCCA+AGG + chr5_4:4335576-4335595 None:intergenic 35.0%
TGAAATTCATTTGCAGGAAC+CGG - chr5_4:4335598-4335617 Msa0831310:CDS 35.0%
AATCAAGCTGTCAATTCCAT+TGG - chr5_4:4335669-4335688 Msa0831310:CDS 35.0%
TCAGTATGTTCAGAAAACTG+AGG + chr5_4:4335719-4335738 None:intergenic 35.0%
AAAATCACGTAACCCAATAG+AGG + chr5_4:4335867-4335886 None:intergenic 35.0%
! AGGCTTTTGTAGAGTAAGGA+CGG + chr5_4:4334741-4334760 None:intergenic 40.0%
! GTCTAGGCTTTTGTAGAGTA+AGG + chr5_4:4334745-4334764 None:intergenic 40.0%
! TGTGAAGACAATGGTGGTTT+TGG + chr5_4:4334777-4334796 None:intergenic 40.0%
TTACTCTGTGAAGACAATGG+TGG + chr5_4:4334783-4334802 None:intergenic 40.0%
GAAAACCTTGGTATAGACCT+TGG + chr5_4:4334841-4334860 None:intergenic 40.0%
CCCAATATGTTAGTACCTGA+TGG + chr5_4:4335509-4335528 None:intergenic 40.0%
AACAAGGCCAAGGTTCAAAT+TGG + chr5_4:4335566-4335585 None:intergenic 40.0%
CAGCTTGATTGAATTTCCAC+TGG + chr5_4:4335659-4335678 None:intergenic 40.0%
GCTGCCAAAATAAGAACCAA+TGG + chr5_4:4335688-4335707 None:intergenic 40.0%
TGTTCAGAAAACTGAGGCAT+AGG + chr5_4:4335713-4335732 None:intergenic 40.0%
ATCAAAGTCCCTTGTGTTGA+AGG - chr5_4:4335819-4335838 Msa0831310:five_prime_UTR 40.0%
TCAAAGTCCCTTGTGTTGAA+GGG - chr5_4:4335820-4335839 Msa0831310:five_prime_UTR 40.0%
! AGGCTTTTGTAGAGTAAGGA+CGG + chr5_4:4334741-4334760 None:intergenic 40.0%
! GTCTAGGCTTTTGTAGAGTA+AGG + chr5_4:4334745-4334764 None:intergenic 40.0%
! TGTGAAGACAATGGTGGTTT+TGG + chr5_4:4334777-4334796 None:intergenic 40.0%
TTACTCTGTGAAGACAATGG+TGG + chr5_4:4334783-4334802 None:intergenic 40.0%
GAAAACCTTGGTATAGACCT+TGG + chr5_4:4334841-4334860 None:intergenic 40.0%
CCCAATATGTTAGTACCTGA+TGG + chr5_4:4335509-4335528 None:intergenic 40.0%
AACAAGGCCAAGGTTCAAAT+TGG + chr5_4:4335566-4335585 None:intergenic 40.0%
CAGCTTGATTGAATTTCCAC+TGG + chr5_4:4335659-4335678 None:intergenic 40.0%
GCTGCCAAAATAAGAACCAA+TGG + chr5_4:4335688-4335707 None:intergenic 40.0%
TGTTCAGAAAACTGAGGCAT+AGG + chr5_4:4335713-4335732 None:intergenic 40.0%
ATCAAAGTCCCTTGTGTTGA+AGG - chr5_4:4335819-4335838 Msa0831310:five_prime_UTR 40.0%
TCAAAGTCCCTTGTGTTGAA+GGG - chr5_4:4335820-4335839 Msa0831310:five_prime_UTR 40.0%
TTTGAGCAGCATCCTGAAGA+CGG + chr5_4:4335033-4335052 None:intergenic 45.0%
TGGTTGTGAATTCACCACAC+TGG + chr5_4:4335061-4335080 None:intergenic 45.0%
ACAACCACTATGCCTATGTC+AGG - chr5_4:4335074-4335093 Msa0831310:intron 45.0%
AGAACCTGACATAGGCATAG+TGG + chr5_4:4335081-4335100 None:intergenic 45.0%
CTATGCCTATGTCAGGTTCT+CGG - chr5_4:4335081-4335100 Msa0831310:intron 45.0%
!!! TTTTACACTGACTCGTGGGT+GGG + chr5_4:4335185-4335204 None:intergenic 45.0%
TCTCCAAACTCAGTTCCATC+AGG - chr5_4:4335491-4335510 Msa0831310:CDS 45.0%
GTACCTGATGGAACTGAGTT+TGG + chr5_4:4335497-4335516 None:intergenic 45.0%
!! TGAGGGAGTGGATTTTGATC+CGG + chr5_4:4335620-4335639 None:intergenic 45.0%
TCAAAATCCACTCCCTCAAC+CGG - chr5_4:4335622-4335641 Msa0831310:CDS 45.0%
GACTGAACCCTTCAACACAA+GGG + chr5_4:4335830-4335849 None:intergenic 45.0%
AGACTGAACCCTTCAACACA+AGG + chr5_4:4335831-4335850 None:intergenic 45.0%
TTTGAGCAGCATCCTGAAGA+CGG + chr5_4:4335033-4335052 None:intergenic 45.0%
TGGTTGTGAATTCACCACAC+TGG + chr5_4:4335061-4335080 None:intergenic 45.0%
ACAACCACTATGCCTATGTC+AGG - chr5_4:4335074-4335093 Msa0831310:intron 45.0%
AGAACCTGACATAGGCATAG+TGG + chr5_4:4335081-4335100 None:intergenic 45.0%
CTATGCCTATGTCAGGTTCT+CGG - chr5_4:4335081-4335100 Msa0831310:intron 45.0%
!!! TTTTACACTGACTCGTGGGT+GGG + chr5_4:4335185-4335204 None:intergenic 45.0%
TCTCCAAACTCAGTTCCATC+AGG - chr5_4:4335491-4335510 Msa0831310:CDS 45.0%
GTACCTGATGGAACTGAGTT+TGG + chr5_4:4335497-4335516 None:intergenic 45.0%
!! TGAGGGAGTGGATTTTGATC+CGG + chr5_4:4335620-4335639 None:intergenic 45.0%
TCAAAATCCACTCCCTCAAC+CGG - chr5_4:4335622-4335641 Msa0831310:CDS 45.0%
GACTGAACCCTTCAACACAA+GGG + chr5_4:4335830-4335849 None:intergenic 45.0%
AGACTGAACCCTTCAACACA+AGG + chr5_4:4335831-4335850 None:intergenic 45.0%
GTAATCGCAATGTTGTGCGC+TGG - chr5_4:4334925-4334944 Msa0831310:exon 50.0%
TTGAGCAGCATCCTGAAGAC+GGG + chr5_4:4335032-4335051 None:intergenic 50.0%
GTGAATTCACCACACTGGCA+AGG + chr5_4:4335056-4335075 None:intergenic 50.0%
!! TTTACACTGACTCGTGGGTG+GGG + chr5_4:4335184-4335203 None:intergenic 50.0%
!!! GTTTTACACTGACTCGTGGG+TGG + chr5_4:4335186-4335205 None:intergenic 50.0%
! GATGATCCATCACCGGTTGA+GGG + chr5_4:4335637-4335656 None:intergenic 50.0%
TCCACTGGATGATCCATCAC+CGG + chr5_4:4335644-4335663 None:intergenic 50.0%
GTAATCGCAATGTTGTGCGC+TGG - chr5_4:4334925-4334944 Msa0831310:exon 50.0%
TTGAGCAGCATCCTGAAGAC+GGG + chr5_4:4335032-4335051 None:intergenic 50.0%
GTGAATTCACCACACTGGCA+AGG + chr5_4:4335056-4335075 None:intergenic 50.0%
!! TTTACACTGACTCGTGGGTG+GGG + chr5_4:4335184-4335203 None:intergenic 50.0%
!!! GTTTTACACTGACTCGTGGG+TGG + chr5_4:4335186-4335205 None:intergenic 50.0%
! GATGATCCATCACCGGTTGA+GGG + chr5_4:4335637-4335656 None:intergenic 50.0%
TCCACTGGATGATCCATCAC+CGG + chr5_4:4335644-4335663 None:intergenic 50.0%
AGTTCCTCAACCCCGTCTTC+AGG - chr5_4:4335018-4335037 Msa0831310:CDS 55.0%
TGAGCAGCATCCTGAAGACG+GGG + chr5_4:4335031-4335050 None:intergenic 55.0%
CTGCTCAAACCTTGCCAGTG+TGG - chr5_4:4335044-4335063 Msa0831310:intron 55.0%
TGCCTATGTCAGGTTCTCGG+CGG - chr5_4:4335084-4335103 Msa0831310:intron 55.0%
GTTTGCACCTTGCAAGCACC+AGG + chr5_4:4335162-4335181 None:intergenic 55.0%
TTCCTGCTGGTGAGTCTGCT+GGG + chr5_4:4335460-4335479 None:intergenic 55.0%
GACTCTGCTTCTGTTCCTGC+TGG + chr5_4:4335473-4335492 None:intergenic 55.0%
! GGATGATCCATCACCGGTTG+AGG + chr5_4:4335638-4335657 None:intergenic 55.0%
!! ACCGGTGATGGATCATCCAG+TGG - chr5_4:4335640-4335659 Msa0831310:CDS 55.0%
AGTTCCTCAACCCCGTCTTC+AGG - chr5_4:4335018-4335037 Msa0831310:CDS 55.0%
TGAGCAGCATCCTGAAGACG+GGG + chr5_4:4335031-4335050 None:intergenic 55.0%
CTGCTCAAACCTTGCCAGTG+TGG - chr5_4:4335044-4335063 Msa0831310:intron 55.0%
TGCCTATGTCAGGTTCTCGG+CGG - chr5_4:4335084-4335103 Msa0831310:intron 55.0%
GTTTGCACCTTGCAAGCACC+AGG + chr5_4:4335162-4335181 None:intergenic 55.0%
TTCCTGCTGGTGAGTCTGCT+GGG + chr5_4:4335460-4335479 None:intergenic 55.0%
GACTCTGCTTCTGTTCCTGC+TGG + chr5_4:4335473-4335492 None:intergenic 55.0%
! GGATGATCCATCACCGGTTG+AGG + chr5_4:4335638-4335657 None:intergenic 55.0%
!! ACCGGTGATGGATCATCCAG+TGG - chr5_4:4335640-4335659 Msa0831310:CDS 55.0%
GCATCCTGAAGACGGGGTTG+AGG + chr5_4:4335025-4335044 None:intergenic 60.0%
GCCTATGTCAGGTTCTCGGC+GGG - chr5_4:4335085-4335104 Msa0831310:intron 60.0%
CCTATGTCAGGTTCTCGGCG+GGG - chr5_4:4335086-4335105 Msa0831310:intron 60.0%
CTATGTCAGGTTCTCGGCGG+GGG - chr5_4:4335087-4335106 Msa0831310:intron 60.0%
!! ACTCAGGCTCTAGCCTTGCC+TGG - chr5_4:4335141-4335160 Msa0831310:intron 60.0%
AGCCTTGCCTGGTGCTTGCA+AGG - chr5_4:4335152-4335171 Msa0831310:intron 60.0%
CACCTTGCAAGCACCAGGCA+AGG + chr5_4:4335157-4335176 None:intergenic 60.0%
TCCTGCTGGTGAGTCTGCTG+GGG + chr5_4:4335459-4335478 None:intergenic 60.0%
GTTCCTGCTGGTGAGTCTGC+TGG + chr5_4:4335461-4335480 None:intergenic 60.0%
TCCACTCCCTCAACCGGTGA+TGG - chr5_4:4335628-4335647 Msa0831310:CDS 60.0%
! TCCATCACCGGTTGAGGGAG+TGG + chr5_4:4335632-4335651 None:intergenic 60.0%
GCATCCTGAAGACGGGGTTG+AGG + chr5_4:4335025-4335044 None:intergenic 60.0%
GCCTATGTCAGGTTCTCGGC+GGG - chr5_4:4335085-4335104 Msa0831310:intron 60.0%
CCTATGTCAGGTTCTCGGCG+GGG - chr5_4:4335086-4335105 Msa0831310:intron 60.0%
CTATGTCAGGTTCTCGGCGG+GGG - chr5_4:4335087-4335106 Msa0831310:intron 60.0%
!! ACTCAGGCTCTAGCCTTGCC+TGG - chr5_4:4335141-4335160 Msa0831310:intron 60.0%
AGCCTTGCCTGGTGCTTGCA+AGG - chr5_4:4335152-4335171 Msa0831310:intron 60.0%
CACCTTGCAAGCACCAGGCA+AGG + chr5_4:4335157-4335176 None:intergenic 60.0%
TCCTGCTGGTGAGTCTGCTG+GGG + chr5_4:4335459-4335478 None:intergenic 60.0%
GTTCCTGCTGGTGAGTCTGC+TGG + chr5_4:4335461-4335480 None:intergenic 60.0%
TCCACTCCCTCAACCGGTGA+TGG - chr5_4:4335628-4335647 Msa0831310:CDS 60.0%
! TCCATCACCGGTTGAGGGAG+TGG + chr5_4:4335632-4335651 None:intergenic 60.0%
CCCCGCCGAGAACCTGACAT+AGG + chr5_4:4335089-4335108 None:intergenic 65.0%
TCCCCAGCAGACTCACCAGC+AGG - chr5_4:4335455-4335474 Msa0831310:intron 65.0%
CCCCGCCGAGAACCTGACAT+AGG + chr5_4:4335089-4335108 None:intergenic 65.0%
TCCCCAGCAGACTCACCAGC+AGG - chr5_4:4335455-4335474 Msa0831310:intron 65.0%
! GGCGGGGGTGCATCGTCGCT+GGG - chr5_4:4335102-4335121 Msa0831310:intron 75.0%
! GGCGGGGGTGCATCGTCGCT+GGG - chr5_4:4335102-4335121 Msa0831310:intron 75.0%
!! CGGCGGGGGTGCATCGTCGC+TGG - chr5_4:4335101-4335120 Msa0831310:intron 80.0%
!! CGGCGGGGGTGCATCGTCGC+TGG - chr5_4:4335101-4335120 Msa0831310:intron 80.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 4334691 4335979 4334691 ID=Msa0831310;Name=Msa0831310
chr5_4 mRNA 4334691 4335979 4334691 ID=Msa0831310-mRNA-1;Parent=Msa0831310;Name=Msa0831310-mRNA-1;_AED=0.02;_eAED=0.02;_QI=195|1|1|1|1|1|3|250|168
chr5_4 exon 4334691 4335056 4334691 ID=Msa0831310-mRNA-1:exon:1784;Parent=Msa0831310-mRNA-1
chr5_4 exon 4335158 4335220 4335158 ID=Msa0831310-mRNA-1:exon:1783;Parent=Msa0831310-mRNA-1
chr5_4 exon 4335457 4335979 4335457 ID=Msa0831310-mRNA-1:exon:1782;Parent=Msa0831310-mRNA-1
chr5_4 five_prime_UTR 4335785 4335979 4335785 ID=Msa0831310-mRNA-1:five_prime_utr;Parent=Msa0831310-mRNA-1
chr5_4 CDS 4335457 4335784 4335457 ID=Msa0831310-mRNA-1:cds;Parent=Msa0831310-mRNA-1
chr5_4 CDS 4335158 4335220 4335158 ID=Msa0831310-mRNA-1:cds;Parent=Msa0831310-mRNA-1
chr5_4 CDS 4334941 4335056 4334941 ID=Msa0831310-mRNA-1:cds;Parent=Msa0831310-mRNA-1
chr5_4 three_prime_UTR 4334691 4334940 4334691 ID=Msa0831310-mRNA-1:three_prime_utr;Parent=Msa0831310-mRNA-1
Gene Sequence

>Msa0831310

ATGGCACACAGCAAAATGAATATGAGTTTGGTTTTGGTTGTAATCGCAATGTTGTGCGCTGGAGCTGCTGCGCAATCGAGTTGTACAAATGTCTTGGTCAGCCTATCACCTTGTCTTAACTATATCACAGGGAGTTCCTCAACCCCGTCTTCAGGATGCTGCTCAAACCTTGCCAGTGTGGTGAATTCACAACCACTATGCCTATGTCAGGTTCTCGGCGGGGGTGCATCGTCGCTGGGAATCAGCATCAATCAAACTCAGGCTCTAGCCTTGCCTGGTGCTTGCAAGGTGCAAACCCCACCCACGAGTCAGTGTAAAACTAATAATGCTGCTTCCCCAGCAGACTCACCAGCAGGAACAGAAGCAGAGTCTCCAAACTCAGTTCCATCAGGAACCGGATCAAAATCCACTCCCTCAACCGGTGATGGATCATCCAGTGGAAATTCAATCAAGCTGTCAATTCCATTGGTTCTTATTTTGGCAGCAGCCTATGCCTCAGTTTTCTGA

Protein sequence

>Msa0831310

MAHSKMNMSLVLVVIAMLCAGAAAQSSCTNVLVSLSPCLNYITGSSSTPSSGCCSNLASVVNSQPLCLCQVLGGGASSLGISINQTQALALPGACKVQTPPTSQCKTNNAASPADSPAGTEAESPNSVPSGTGSKSTPSTGDGSSSGNSIKLSIPLVLILAAAYASVF*