Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0641290 | AES88286.2 | 88.623 | 879 | 64 | 5 | 1 | 876 | 1 | 846 | 0.0 | 1573 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0641290 | sp|Q9FQ03|XRN3_ARATH | 45.606 | 842 | 329 | 17 | 1 | 733 | 1 | 822 | 0.0 | 646 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000190 | Msa0641290 | 0.807513 | 4.872162e-50 | -8.615850e-47 |
| Msa0017510 | Msa0641290 | 0.807835 | 4.161949e-50 | -8.615850e-47 |
| Msa0641290 | Msa0679740 | 0.840462 | 8.571455e-58 | -8.615850e-47 |
| Msa0641290 | Msa0760130 | 0.810990 | 8.756013e-51 | -8.615850e-47 |
| Msa0641290 | Msa0880140 | 0.805590 | 1.240242e-49 | -8.615850e-47 |
| Msa0641290 | Msa0909120 | 0.803524 | 3.345216e-49 | -8.615850e-47 |
| Msa0641290 | Msa0909140 | 0.821335 | 4.264982e-53 | -8.615850e-47 |
| Msa0641290 | Msa0964840 | 0.801687 | 8.003957e-49 | -8.615850e-47 |
| Msa0641290 | Msa0967380 | 0.802454 | 5.567178e-49 | -8.615850e-47 |
| Msa0641290 | Msa0967870 | 0.800355 | 1.498408e-48 | -8.615850e-47 |
| Msa0641290 | Msa0969450 | 0.807335 | 5.314923e-50 | -8.615850e-47 |
| Msa0641290 | Msa1019000 | 0.802343 | 5.869442e-49 | -8.615850e-47 |
| Msa0641290 | Msa1147740 | 0.817680 | 2.908081e-52 | -8.615850e-47 |
| Msa0641290 | Msa1333480 | 0.805230 | 1.475920e-49 | -8.615850e-47 |
| Msa0641290 | Msa1438250 | 0.818704 | 1.705873e-52 | -8.615850e-47 |
| Msa0139060 | Msa0641290 | 0.815944 | 7.129658e-52 | -8.615850e-47 |
| Msa0157290 | Msa0641290 | 0.808067 | 3.716440e-50 | -8.615850e-47 |
| Msa0200260 | Msa0641290 | 0.803165 | 3.970448e-49 | -8.615850e-47 |
| Msa0211150 | Msa0641290 | 0.820041 | 8.456922e-53 | -8.615850e-47 |
| Msa0213520 | Msa0641290 | 0.802158 | 6.407067e-49 | -8.615850e-47 |
| Msa0376350 | Msa0641290 | 0.817329 | 3.489590e-52 | -8.615850e-47 |
| Msa0392510 | Msa0641290 | 0.806440 | 8.218313e-50 | -8.615850e-47 |
| Msa0393080 | Msa0641290 | 0.810920 | 9.065258e-51 | -8.615850e-47 |
| Msa0424790 | Msa0641290 | 0.808650 | 2.790947e-50 | -8.615850e-47 |
| Msa0440750 | Msa0641290 | 0.812030 | 5.202879e-51 | -8.615850e-47 |
| Msa0464680 | Msa0641290 | 0.814052 | 1.875180e-51 | -8.615850e-47 |
| Msa0287740 | Msa0641290 | 0.801101 | 1.055520e-48 | -8.615850e-47 |
| Msa0488560 | Msa0641290 | 0.808345 | 3.242400e-50 | -8.615850e-47 |
| Msa0516170 | Msa0641290 | 0.818784 | 1.636434e-52 | -8.615850e-47 |
| Msa0545200 | Msa0641290 | 0.844578 | 6.931896e-59 | -8.615850e-47 |
| Msa0545210 | Msa0641290 | 0.820897 | 5.379477e-53 | -8.615850e-47 |
| Msa0600700 | Msa0641290 | 0.812332 | 4.472145e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0641290 | MtrunA17_Chr4g0025871 | 89.167 | 720 | 51 | 3 | 1 | 719 | 1 | 694 | 0.0 | 1286 |
| Msa0641290 | MtrunA17_Chr1g0156381 | 44.380 | 863 | 344 | 16 | 1 | 745 | 1 | 845 | 0.0 | 686 |
| Msa0641290 | MtrunA17_Chr4g0030651 | 45.721 | 853 | 335 | 17 | 1 | 747 | 1 | 831 | 0.0 | 681 |
| Msa0641290 | MtrunA17_Chr7g0240901 | 44.767 | 860 | 345 | 18 | 1 | 750 | 1 | 840 | 0.0 | 665 |
| Msa0641290 | MtrunA17_Chr1g0191031 | 45.571 | 700 | 259 | 10 | 1 | 654 | 1 | 624 | 0.0 | 588 |
| Msa0641290 | MtrunA17_Chr7g0273801 | 42.999 | 807 | 308 | 20 | 1 | 733 | 1 | 729 | 0.0 | 580 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0641290 | AT1G75660.1 | 45.606 | 842 | 329 | 17 | 1 | 733 | 1 | 822 | 0.0 | 646 |
| Msa0641290 | AT5G42540.1 | 43.593 | 874 | 360 | 17 | 1 | 772 | 1 | 843 | 0.0 | 629 |
| Msa0641290 | AT5G42540.2 | 43.213 | 884 | 360 | 17 | 1 | 772 | 1 | 854 | 0.0 | 627 |
| Msa0641290 | AT1G54490.1 | 42.683 | 820 | 317 | 14 | 1 | 747 | 1 | 740 | 0.0 | 610 |
| Msa0641290 | AT1G54490.2 | 42.722 | 742 | 298 | 11 | 60 | 747 | 14 | 682 | 0.0 | 556 |
Find 165 sgRNAs with CRISPR-Local
Find 418 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTCATGATCGATCCTTTC+TGG | 0.136189 | 4_3:-41351785 | None:intergenic |
| CCTTAAGAGCCTTTGAAATT+TGG | 0.147817 | 4_3:-41346654 | None:intergenic |
| GCTTGCAGCTCTTGCATATT+TGG | 0.157293 | 4_3:+41347740 | Msa0641290:intron |
| CTCACTTAAGTTAAACAAAT+TGG | 0.162061 | 4_3:+41350677 | Msa0641290:CDS |
| TCCATTTGCTTCGGACTTAA+AGG | 0.176185 | 4_3:+41349529 | Msa0641290:CDS |
| ACATTTGTAGTGTTTGTGTT+AGG | 0.225392 | 4_3:-41345228 | None:intergenic |
| CCAAATTTCAAAGGCTCTTA+AGG | 0.227180 | 4_3:+41346654 | Msa0641290:CDS |
| GGTGGTCGAAATGATTATTT+TGG | 0.237859 | 4_3:+41352160 | Msa0641290:three_prime_UTR |
| AGTCAGCAATATAATCGTTT+TGG | 0.243811 | 4_3:+41351375 | Msa0641290:CDS |
| TCTGCCTCACTTGCCATCTT+TGG | 0.255825 | 4_3:+41347885 | Msa0641290:CDS |
| ATCTTCATTTGTTTCTTTGC+TGG | 0.261003 | 4_3:+41347853 | Msa0641290:CDS |
| GACACTTCACATTCTTGTTT+TGG | 0.261610 | 4_3:-41346592 | None:intergenic |
| GCTGGTGTTGGATGGGGTTC+AGG | 0.272833 | 4_3:+41351752 | Msa0641290:CDS |
| ATCTTATGTTCCCCTTCTTC+AGG | 0.298999 | 4_3:-41346885 | None:intergenic |
| AACACGGTCCACTGTCTATA+TGG | 0.301590 | 4_3:+41346954 | Msa0641290:CDS |
| GCCTCGCAAGCTATTGTATA+TGG | 0.302733 | 4_3:+41345491 | Msa0641290:CDS |
| AGCAAATGCATAAAAGATAA+AGG | 0.304261 | 4_3:+41348670 | Msa0641290:CDS |
| TTTGATTAAACCACAATTAG+TGG | 0.305130 | 4_3:+41352268 | Msa0641290:three_prime_UTR |
| CCACCAAAACTAGTTGAGTT+AGG | 0.311068 | 4_3:-41351683 | None:intergenic |
| TAGATAAAATTGGGAACATT+TGG | 0.313148 | 4_3:+41348893 | Msa0641290:intron |
| CCGCCGACATTGAGCTAAAA+AGG | 0.319916 | 4_3:+41348960 | Msa0641290:CDS |
| ATCAATTGTGCATAGGCTTT+AGG | 0.320131 | 4_3:-41349748 | None:intergenic |
| TGTATGCAAACTTCCATATA+TGG | 0.330217 | 4_3:+41350435 | Msa0641290:CDS |
| TACACGCATTTCATCGTCTT+TGG | 0.335886 | 4_3:-41346408 | None:intergenic |
| AAACACTTTACAAAACAAAA+AGG | 0.336730 | 4_3:-41352049 | None:intergenic |
| TCCATTATGGAAGGGTATTA+TGG | 0.337543 | 4_3:+41346705 | Msa0641290:CDS |
| GGATATCCTCTGATCCATTA+TGG | 0.339612 | 4_3:+41346692 | Msa0641290:CDS |
| TTGTTGTTGCTATCATCATT+AGG | 0.343938 | 4_3:-41345306 | None:intergenic |
| CCAATTCCAACAGCTCATTT+AGG | 0.346839 | 4_3:+41351963 | Msa0641290:CDS |
| CTATTGAGAAGTTGTGATTA+TGG | 0.348652 | 4_3:+41345143 | Msa0641290:exon |
| CAACGTTCGAGTGCGCCTTT+TGG | 0.353812 | 4_3:+41351881 | Msa0641290:CDS |
| GAAATTCAGTTGAAGTTGAT+AGG | 0.363011 | 4_3:+41350613 | Msa0641290:CDS |
| CAAATTTCAAAGGCTCTTAA+GGG | 0.364695 | 4_3:+41346655 | Msa0641290:CDS |
| GCTCCTTTGTGAATTGATTC+CGG | 0.366798 | 4_3:-41351731 | None:intergenic |
| TATAGACAGTGGACCGTGTT+TGG | 0.368333 | 4_3:-41346951 | None:intergenic |
| CCTAAATGAGCTGTTGGAAT+TGG | 0.368748 | 4_3:-41351963 | None:intergenic |
| CATTTGTAGTGTTTGTGTTA+GGG | 0.370412 | 4_3:-41345227 | None:intergenic |
| ATGACAGTCCAAGCATTATA+AGG | 0.371121 | 4_3:-41347078 | None:intergenic |
| TTACTGAAGAACATTGCTTT+TGG | 0.371608 | 4_3:+41352139 | Msa0641290:three_prime_UTR |
| TTGAACCGCTTTGGAGCATT+TGG | 0.372267 | 4_3:-41347541 | None:intergenic |
| GCAAATGCATAAAAGATAAA+GGG | 0.375415 | 4_3:+41348671 | Msa0641290:CDS |
| GATTAAACCTTGAACCGCTT+TGG | 0.375630 | 4_3:-41347550 | None:intergenic |
| CCATTTGCTTCGGACTTAAA+GGG | 0.386749 | 4_3:+41349530 | Msa0641290:CDS |
| TTAATGTCTTCAAACACCTT+TGG | 0.388588 | 4_3:-41345204 | None:intergenic |
| ACCATAATACCCTTCCATAA+TGG | 0.397535 | 4_3:-41346706 | None:intergenic |
| CCATTATGGTCCATTTGCTT+CGG | 0.407193 | 4_3:+41349520 | Msa0641290:CDS |
| AAGCTATTGTATATGGCTAT+TGG | 0.413300 | 4_3:+41345498 | Msa0641290:CDS |
| TAATCCATTCTTGAGATCTC+TGG | 0.415824 | 4_3:-41350482 | None:intergenic |
| GGTCAAATAATCAAGACAAT+TGG | 0.416873 | 4_3:+41351621 | Msa0641290:intron |
| CACCAAAACTAGTTGAGTTA+GGG | 0.419048 | 4_3:-41351682 | None:intergenic |
| TATTGAGAAGTTGTGATTAT+GGG | 0.427863 | 4_3:+41345144 | Msa0641290:exon |
| ACTGAGGAAGGAATTTGAAA+TGG | 0.428253 | 4_3:+41346552 | Msa0641290:CDS |
| ACTATCTGGTGTAAACCTTC+CGG | 0.432800 | 4_3:+41351051 | Msa0641290:CDS |
| TTAAGGGTTATATTTCTTCA+AGG | 0.435607 | 4_3:+41346671 | Msa0641290:CDS |
| CATAAACAACCTAATGATCA+TGG | 0.436115 | 4_3:+41351842 | Msa0641290:CDS |
| AATATTTGACTTGTATCCTC+AGG | 0.436724 | 4_3:+41349789 | Msa0641290:CDS |
| CTTGCATATTTGGTTGTTGA+GGG | 0.437057 | 4_3:+41347750 | Msa0641290:CDS |
| TAAAACGTCTAGTTCTTTGC+TGG | 0.439072 | 4_3:-41346379 | None:intergenic |
| TGGTGTAAACCTTCCGGAAA+AGG | 0.441855 | 4_3:+41351057 | Msa0641290:CDS |
| CCGAAGCAAATGGACCATAA+TGG | 0.445134 | 4_3:-41349520 | None:intergenic |
| AGAACTAAAGCAGCAGGGTT+AGG | 0.445423 | 4_3:-41352296 | None:intergenic |
| TGCAGCTTCTCATAGTAGTT+AGG | 0.445944 | 4_3:-41347517 | None:intergenic |
| ACAAATTGGATACAAGCATA+AGG | 0.446462 | 4_3:+41350691 | Msa0641290:CDS |
| GTTGATAGGTTGTTGGTTAG+TGG | 0.446578 | 4_3:+41350627 | Msa0641290:CDS |
| AGTTGAAGTTGATAGGTTGT+TGG | 0.447716 | 4_3:+41350620 | Msa0641290:CDS |
| CATGTTCAGCATCTACTATC+TGG | 0.451931 | 4_3:+41351037 | Msa0641290:CDS |
| TACGATCCTCCATGATCATT+AGG | 0.453549 | 4_3:-41351851 | None:intergenic |
| CCCTTTAAGTCCGAAGCAAA+TGG | 0.454665 | 4_3:-41349530 | None:intergenic |
| CAAAGGAGCTGGTGTTGGAT+GGG | 0.455954 | 4_3:+41351745 | Msa0641290:CDS |
| TCATTAGGTTGTTTATGAAA+AGG | 0.459890 | 4_3:-41351836 | None:intergenic |
| AGTTGATCAAAAGGTAAGAA+TGG | 0.463553 | 4_3:-41349590 | None:intergenic |
| ACACTTAAAAGTTGATCAAA+AGG | 0.465449 | 4_3:-41349599 | None:intergenic |
| TGCTCCTCCAACAACATTTG+TGG | 0.467498 | 4_3:+41345416 | Msa0641290:CDS |
| GTTGGATGGGGTTCAGGCAG+AGG | 0.469950 | 4_3:+41351758 | Msa0641290:CDS |
| AACACTTCCACAAATGTTGT+TGG | 0.470462 | 4_3:-41345423 | None:intergenic |
| AAATGCTCCAAAGCGGTTCA+AGG | 0.473649 | 4_3:+41347543 | Msa0641290:CDS |
| ACATGACTCGTACCGCCAAC+AGG | 0.474034 | 4_3:-41351019 | None:intergenic |
| CAGAAGTTGCTTCATGGACA+TGG | 0.477773 | 4_3:+41349198 | Msa0641290:CDS |
| AAATTAAGAACTAAAGCAGC+AGG | 0.478122 | 4_3:-41352302 | None:intergenic |
| TAAGTGTTCTCCCTCAAAAG+AGG | 0.480997 | 4_3:+41349615 | Msa0641290:CDS |
| ATAAGATTATGTCATTCATA+AGG | 0.484859 | 4_3:+41346901 | Msa0641290:CDS |
| ACAGCTCATTTAGGCCTCAA+TGG | 0.490917 | 4_3:+41351972 | Msa0641290:CDS |
| GAAACCAGAGATCTCAAGAA+TGG | 0.495375 | 4_3:+41350478 | Msa0641290:CDS |
| TGCTTCGGACTTAAAGGGCA+TGG | 0.502737 | 4_3:+41349535 | Msa0641290:CDS |
| GATGCTAATGTTCCTGAAGA+AGG | 0.503110 | 4_3:+41346873 | Msa0641290:CDS |
| AAGAAAGAGTTCAGTAAACT+TGG | 0.504746 | 4_3:+41348045 | Msa0641290:CDS |
| CGACCTCGTCCACGACCAAA+AGG | 0.509238 | 4_3:-41351896 | None:intergenic |
| ACAAAGGAGCTGGTGTTGGA+TGG | 0.510814 | 4_3:+41351744 | Msa0641290:CDS |
| AGGAAAGCGCTTCATGTGGC+AGG | 0.513892 | 4_3:+41349912 | Msa0641290:CDS |
| TGTTGCTATCATCATTAGGA+TGG | 0.516700 | 4_3:-41345302 | None:intergenic |
| TTTAGCAGCGACGGCATTGG+AGG | 0.516743 | 4_3:+41350836 | Msa0641290:intron |
| AGGGTAAAAGTGAAAACAGT+TGG | 0.520228 | 4_3:+41352104 | Msa0641290:intron |
| TTGAGGCCTAAATGAGCTGT+TGG | 0.520881 | 4_3:-41351969 | None:intergenic |
| ACCTCATGAATATCCAAAGA+TGG | 0.524284 | 4_3:-41347898 | None:intergenic |
| AGCCTATGCACAATTGATGT+TGG | 0.525564 | 4_3:+41349753 | Msa0641290:CDS |
| CAAATAATCAAGACAATTGG+AGG | 0.527407 | 4_3:+41351624 | Msa0641290:CDS |
| ATGCTAATGTTCCTGAAGAA+GGG | 0.531786 | 4_3:+41346874 | Msa0641290:CDS |
| ATTCACAAAGGAGCTGGTGT+TGG | 0.536127 | 4_3:+41351740 | Msa0641290:CDS |
| AAAGAGTTCAGTAAACTTGG+TGG | 0.537027 | 4_3:+41348048 | Msa0641290:CDS |
| AAAGGAGCTGGTGTTGGATG+GGG | 0.537514 | 4_3:+41351746 | Msa0641290:CDS |
| TTAGGCAAATCCACTAATTG+TGG | 0.538521 | 4_3:-41352278 | None:intergenic |
| GATGCTGACCTTATAATGCT+TGG | 0.541003 | 4_3:+41347070 | Msa0641290:CDS |
| ACAGAATGCATGTGATTACA+TGG | 0.542418 | 4_3:+41348450 | Msa0641290:CDS |
| GCGCACTCGAACGTTGATGA+TGG | 0.544916 | 4_3:-41351874 | None:intergenic |
| TCTTGCATATTTGGTTGTTG+AGG | 0.545104 | 4_3:+41347749 | Msa0641290:CDS |
| TGGAGGAATTCAAGCAGAGA+AGG | 0.546559 | 4_3:+41351641 | Msa0641290:CDS |
| AGGAAGGAATTTGAAATGGA+AGG | 0.549315 | 4_3:+41346556 | Msa0641290:CDS |
| AGACTGAAGACAAACATTGT+CGG | 0.549409 | 4_3:-41348530 | None:intergenic |
| ACCAAAACTAGTTGAGTTAG+GGG | 0.549416 | 4_3:-41351681 | None:intergenic |
| TAGGTTCAAAAGTACACTGA+AGG | 0.551381 | 4_3:+41349146 | Msa0641290:intron |
| GAATCAATTCACAAAGGAGC+TGG | 0.552611 | 4_3:+41351734 | Msa0641290:CDS |
| ACTTCGTCTTTGATCTTGAG+CGG | 0.552614 | 4_3:+41347815 | Msa0641290:CDS |
| ATCCTCTGATCCATTATGGA+AGG | 0.554798 | 4_3:+41346696 | Msa0641290:CDS |
| GCCTCAATGGAGTGATTCAA+AGG | 0.557141 | 4_3:+41351985 | Msa0641290:CDS |
| TAACACAAACACTACAAATG+TGG | 0.557233 | 4_3:+41345230 | Msa0641290:CDS |
| TCCTTTGAATCACTCCATTG+AGG | 0.564584 | 4_3:-41351986 | None:intergenic |
| GCAAATGGACCATAATGGAA+TGG | 0.565479 | 4_3:-41349515 | None:intergenic |
| ACTTCCACAAATGTTGTTGG+AGG | 0.568177 | 4_3:-41345420 | None:intergenic |
| CGGAGATTTCTTGACTGACA+AGG | 0.571449 | 4_3:+41348708 | Msa0641290:CDS |
| ATATTTGACTTGTATCCTCA+GGG | 0.572723 | 4_3:+41349790 | Msa0641290:CDS |
| TAAACTTGGTGGATATCTTG+TGG | 0.573614 | 4_3:+41348059 | Msa0641290:CDS |
| GCCATCTTTGGATATTCATG+AGG | 0.581463 | 4_3:+41347897 | Msa0641290:CDS |
| GTTCATGCACCAAATTTCAA+AGG | 0.582293 | 4_3:+41346645 | Msa0641290:CDS |
| AAAGGGGACTTGTTTAAAAG+CGG | 0.582784 | 4_3:+41348688 | Msa0641290:CDS |
| TGTTGTTCTCGACACACTCG+TGG | 0.584538 | 4_3:-41350874 | None:intergenic |
| GTCAAATACGAGCATCCTGT+TGG | 0.585042 | 4_3:+41351004 | Msa0641290:CDS |
| TGCTAATGTTCCTGAAGAAG+GGG | 0.588627 | 4_3:+41346875 | Msa0641290:CDS |
| GCCATATACAATAGCTTGCG+AGG | 0.591780 | 4_3:-41345492 | None:intergenic |
| CTTGTATTTATAGGAAGTCG+AGG | 0.592321 | 4_3:+41346522 | Msa0641290:intron |
| CGAGGAAGAGAGACTGAGGA+AGG | 0.595085 | 4_3:+41346540 | Msa0641290:CDS |
| TTAGCAGCGACGGCATTGGA+GGG | 0.605881 | 4_3:+41350837 | Msa0641290:intron |
| CAAATGCATAAAAGATAAAG+GGG | 0.607587 | 4_3:+41348672 | Msa0641290:CDS |
| ACCCTTCCATAATGGATCAG+AGG | 0.608192 | 4_3:-41346698 | None:intergenic |
| AAATACGAGCATCCTGTTGG+CGG | 0.609127 | 4_3:+41351007 | Msa0641290:CDS |
| TGGTGCATGAACTCAGTCCC+TGG | 0.609128 | 4_3:-41346634 | None:intergenic |
| ATCCAACATCAATTGTGCAT+AGG | 0.611572 | 4_3:-41349755 | None:intergenic |
| TCCTCTGATCCATTATGGAA+GGG | 0.614366 | 4_3:+41346697 | Msa0641290:CDS |
| CAGGCAGAGGAAAACCAGAA+AGG | 0.620411 | 4_3:+41351771 | Msa0641290:CDS |
| TGAAAATGACATAAATGAGA+CGG | 0.621619 | 4_3:+41351335 | Msa0641290:CDS |
| GTACACTGAAGGATTGCTGT+GGG | 0.629220 | 4_3:+41349157 | Msa0641290:CDS |
| GTTACTTAACAAATATCCAA+AGG | 0.635055 | 4_3:+41345188 | Msa0641290:CDS |
| ATATCCAAAGATGGCAAGTG+AGG | 0.636990 | 4_3:-41347889 | None:intergenic |
| AGAATTTCAATGTGTACACA+TGG | 0.639863 | 4_3:+41351927 | Msa0641290:CDS |
| GATTCTAATATAATAACACC+AGG | 0.640483 | 4_3:+41346616 | Msa0641290:CDS |
| GTGATTCAAAGGATAGAAGT+CGG | 0.641506 | 4_3:+41351996 | Msa0641290:CDS |
| AATTAAGAACTAAAGCAGCA+GGG | 0.642263 | 4_3:-41352301 | None:intergenic |
| CCTTTGTGAATTGATTCCGG+AGG | 0.644128 | 4_3:-41351728 | None:intergenic |
| AAGTCGAGGAAGAGAGACTG+AGG | 0.648676 | 4_3:+41346536 | Msa0641290:CDS |
| GGTCCACTGTCTATATGGAT+CGG | 0.650979 | 4_3:+41346959 | Msa0641290:CDS |
| AGTACACTGAAGGATTGCTG+TGG | 0.652414 | 4_3:+41349156 | Msa0641290:CDS |
| TCATCATTAGGATGGAAACA+AGG | 0.654793 | 4_3:-41345294 | None:intergenic |
| ATATCTTGTGGACATAAACA+AGG | 0.656031 | 4_3:+41348071 | Msa0641290:CDS |
| AGTAACCATCTATAAAACGA+TGG | 0.659634 | 4_3:-41345171 | None:intergenic |
| TAGAAGGAAAGCGCTTCATG+TGG | 0.670368 | 4_3:+41349908 | Msa0641290:CDS |
| TTCTGATTATGATCCAAACA+CGG | 0.670995 | 4_3:+41346938 | Msa0641290:CDS |
| TGCAACCAAATGCTCCAAAG+CGG | 0.679567 | 4_3:+41347536 | Msa0641290:CDS |
| AAACAGTTAGGGGAGAAACA+TGG | 0.682040 | 4_3:+41348203 | Msa0641290:intron |
| CCAAAACTAGTTGAGTTAGG+GGG | 0.684296 | 4_3:-41351680 | None:intergenic |
| ACATAAATGAGACGGTACTG+TGG | 0.689993 | 4_3:+41351343 | Msa0641290:CDS |
| ATACCGATCCATATAGACAG+TGG | 0.691742 | 4_3:-41346962 | None:intergenic |
| CCTCCGGAATCAATTCACAA+AGG | 0.701480 | 4_3:+41351728 | Msa0641290:CDS |
| ATTCAAAGGATAGAAGTCGG+TGG | 0.717801 | 4_3:+41351999 | Msa0641290:CDS |
| AAACAACCTAATGATCATGG+AGG | 0.725320 | 4_3:+41351845 | Msa0641290:CDS |
| ATTCTAATATAATAACACCA+GGG | 0.743037 | 4_3:+41346617 | Msa0641290:CDS |
| TCATTCATAAGGAAACAGCG+TGG | 0.793260 | 4_3:+41346912 | Msa0641290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCTTAAAATATAGTATA+AGG | - | chr4_3:41345549-41345568 | None:intergenic | 10.0% |
| !! | TGTTAATATAGTAATTTATT+TGG | + | chr4_3:41345769-41345788 | Msa0641290:intron | 10.0% |
| !! | AAAAAATTGAACTTATAAAA+TGG | + | chr4_3:41346456-41346475 | Msa0641290:intron | 10.0% |
| !! | TATTATAAATAATTTATCGT+TGG | + | chr4_3:41346766-41346785 | Msa0641290:intron | 10.0% |
| !!! | TTTTTCAAAATCTAAAAATA+AGG | - | chr4_3:41348625-41348644 | None:intergenic | 10.0% |
| !!! | AATTTTCTTAATTATAACTA+TGG | + | chr4_3:41349639-41349658 | Msa0641290:intron | 10.0% |
| !! | AAATCAAATAATATTTATCA+TGG | - | chr4_3:41349702-41349721 | None:intergenic | 10.0% |
| !!! | TGTCAAAATAACTTTTTTAT+TGG | + | chr4_3:41345746-41345765 | Msa0641290:intron | 15.0% |
| !! | AATTTATTTGGTTAAAACAA+CGG | + | chr4_3:41345781-41345800 | Msa0641290:intron | 15.0% |
| !!! | ATAATTTAATATGGTCTTTT+CGG | + | chr4_3:41345888-41345907 | Msa0641290:intron | 15.0% |
| !!! | AAACTTATATTGTTTTCTAT+AGG | - | chr4_3:41346060-41346079 | None:intergenic | 15.0% |
| !!! | AATTTTGTTCTTGTATTTAT+AGG | + | chr4_3:41346513-41346532 | Msa0641290:intron | 15.0% |
| !! | TATCGATAAATAATTAAAGA+TGG | - | chr4_3:41347148-41347167 | None:intergenic | 15.0% |
| !! | ATAACAATATCATTCAATAA+TGG | + | chr4_3:41349103-41349122 | Msa0641290:intron | 15.0% |
| !! | ATGCTTGAATAAAATTAAAT+CGG | + | chr4_3:41349234-41349253 | Msa0641290:intron | 15.0% |
| !!! | TTAAATGTTTTAATATGTGT+CGG | - | chr4_3:41350334-41350353 | None:intergenic | 15.0% |
| !! | ATTAATGATATTTCTCATTT+AGG | + | chr4_3:41350411-41350430 | Msa0641290:intron | 15.0% |
| !! | TTAATGATATTTCTCATTTA+GGG | + | chr4_3:41350412-41350431 | Msa0641290:intron | 15.0% |
| !!! | ATATATTGTGTTTAGAATTA+AGG | + | chr4_3:41350766-41350785 | Msa0641290:intron | 15.0% |
| !!! | TTGTTGTTTTATTTATCATT+TGG | + | chr4_3:41350942-41350961 | Msa0641290:intron | 15.0% |
| !! | GCAATATAAAAATGTAATTA+AGG | - | chr4_3:41350968-41350987 | None:intergenic | 15.0% |
| !! | TAGTAATATTAGGTAATATA+AGG | - | chr4_3:41351209-41351228 | None:intergenic | 15.0% |
| !! | TTATATTACCTAATATTACT+AGG | + | chr4_3:41351208-41351227 | Msa0641290:intron | 15.0% |
| !! | TATATTACCTAATATTACTA+GGG | + | chr4_3:41351209-41351228 | Msa0641290:intron | 15.0% |
| !! | GATTCAATTTAAAAAAATCT+TGG | + | chr4_3:41351577-41351596 | Msa0641290:intron | 15.0% |
| !!! | AGATTTTGTTTTTCTTTACT+AGG | + | chr4_3:41345563-41345582 | Msa0641290:intron | 20.0% |
| !! | TTAGTAACATAATGTTAAGA+GGG | + | chr4_3:41345597-41345616 | Msa0641290:intron | 20.0% |
| !! | TAAAATGGTTGAATGATTTA+AGG | + | chr4_3:41346471-41346490 | Msa0641290:intron | 20.0% |
| !! | ATTCTAATATAATAACACCA+GGG | + | chr4_3:41346617-41346636 | Msa0641290:CDS | 20.0% |
| !! | ATAAGATTATGTCATTCATA+AGG | + | chr4_3:41346901-41346920 | Msa0641290:CDS | 20.0% |
| !! | TCAAATATTTCAAATATCAG+AGG | - | chr4_3:41347023-41347042 | None:intergenic | 20.0% |
| !!! | TGAGATGAAACTTTTTATTT+TGG | + | chr4_3:41347040-41347059 | Msa0641290:intron | 20.0% |
| !! | ATTAAAGAAAACATTGACAT+CGG | + | chr4_3:41347325-41347344 | Msa0641290:intron | 20.0% |
| !!! | AAACATTTTTTCCTATAGTT+AGG | + | chr4_3:41347927-41347946 | Msa0641290:intron | 20.0% |
| !! | AGAAAAATAAATAAGGGATT+AGG | - | chr4_3:41348118-41348137 | None:intergenic | 20.0% |
| !! | AGTTGAAAAATTCATTCTTA+AGG | + | chr4_3:41348247-41348266 | Msa0641290:CDS | 20.0% |
| !!! | TTAGATTTTGAAAAACACAA+AGG | + | chr4_3:41348630-41348649 | Msa0641290:intron | 20.0% |
| !! | AAACTAAGAACAAATGTAAA+AGG | - | chr4_3:41348755-41348774 | None:intergenic | 20.0% |
| !!! | TGTTTTTGTTATCTGATAAA+TGG | + | chr4_3:41348791-41348810 | Msa0641290:intron | 20.0% |
| !!! | CATCCTTTTTAGATAAAATT+GGG | + | chr4_3:41348884-41348903 | Msa0641290:intron | 20.0% |
| !! | AATAACCAAACTGTATTAAA+TGG | + | chr4_3:41349339-41349358 | Msa0641290:intron | 20.0% |
| !!! | AGTTTGTTCTTTAACTATAA+TGG | - | chr4_3:41349422-41349441 | None:intergenic | 20.0% |
| !! | TTATAGTTAAAGAACAAACT+TGG | + | chr4_3:41349422-41349441 | Msa0641290:intron | 20.0% |
| !!! | GATTTTGAAATTGATATAGA+AGG | + | chr4_3:41349892-41349911 | Msa0641290:intron | 20.0% |
| !!! | ACCTTATTTATACAAACAAA+GGG | - | chr4_3:41350105-41350124 | None:intergenic | 20.0% |
| !! | TTTGTATAAATAAGGTCATT+TGG | + | chr4_3:41350109-41350128 | Msa0641290:intron | 20.0% |
| !! | GAATTCAAAATTGTTCAATT+AGG | + | chr4_3:41350146-41350165 | Msa0641290:intron | 20.0% |
| !!! | TCTTTTGATTCTCTTTAATT+TGG | + | chr4_3:41350283-41350302 | Msa0641290:intron | 20.0% |
| !!! | CTTTTGATTCTCTTTAATTT+GGG | + | chr4_3:41350284-41350303 | Msa0641290:intron | 20.0% |
| !! | AATGGTTAAAAAAAAATCGA+GGG | - | chr4_3:41350525-41350544 | None:intergenic | 20.0% |
| !! | TAATGGTTAAAAAAAAATCG+AGG | - | chr4_3:41350526-41350545 | None:intergenic | 20.0% |
| !! | CACAAAACACTAAAATTTAA+TGG | - | chr4_3:41350543-41350562 | None:intergenic | 20.0% |
| !! | AACATAGTTGGAAATTTAAA+GGG | - | chr4_3:41350570-41350589 | None:intergenic | 20.0% |
| !! | TAACATAGTTGGAAATTTAA+AGG | - | chr4_3:41350571-41350590 | None:intergenic | 20.0% |
| !!! | GGTTAGTTATTAAACAAATT+AGG | + | chr4_3:41351093-41351112 | Msa0641290:intron | 20.0% |
| !! | ACTAACAAAATTGAATATTC+AGG | + | chr4_3:41351600-41351619 | Msa0641290:intron | 20.0% |
| !! | AAACACTTTACAAAACAAAA+AGG | - | chr4_3:41352052-41352071 | None:intergenic | 20.0% |
| !!! | TTGTTTTGTAAAGTGTTTAA+TGG | + | chr4_3:41352054-41352073 | Msa0641290:intron | 20.0% |
| !!! | TTTGTTTTTTGTTAAATGAC+AGG | + | chr4_3:41352084-41352103 | Msa0641290:intron | 20.0% |
| !!! | TTGTTTTTTGTTAAATGACA+GGG | + | chr4_3:41352085-41352104 | Msa0641290:intron | 20.0% |
| !!! | TGGTTTAGGGTTTATATTTT+TGG | - | chr4_3:41345104-41345123 | None:intergenic | 25.0% |
| ! | TATTGAGAAGTTGTGATTAT+GGG | + | chr4_3:41345144-41345163 | Msa0641290:exon | 25.0% |
| ! | GTTACTTAACAAATATCCAA+AGG | + | chr4_3:41345188-41345207 | Msa0641290:CDS | 25.0% |
| !!! | TATAGTTTAGTTTCTGAAGT+TGG | + | chr4_3:41345373-41345392 | Msa0641290:intron | 25.0% |
| ! | GTTAGTAACATAATGTTAAG+AGG | + | chr4_3:41345596-41345615 | Msa0641290:intron | 25.0% |
| ! | TAGTAACATAATGTTAAGAG+GGG | + | chr4_3:41345598-41345617 | Msa0641290:intron | 25.0% |
| !!! | GAATGAGTTGTTACTTTTTT+GGG | - | chr4_3:41345646-41345665 | None:intergenic | 25.0% |
| !!! | TGAATGAGTTGTTACTTTTT+TGG | - | chr4_3:41345647-41345666 | None:intergenic | 25.0% |
| ! | ATTAAGTCATTTATGCAAAC+AGG | + | chr4_3:41346154-41346173 | Msa0641290:intron | 25.0% |
| ! | ACTAATAACCTATACACTAT+GGG | - | chr4_3:41346180-41346199 | None:intergenic | 25.0% |
| ! | TACTAATAACCTATACACTA+TGG | - | chr4_3:41346181-41346200 | None:intergenic | 25.0% |
| ! | AAGCAAATGTATAACATTAG+GGG | - | chr4_3:41346275-41346294 | None:intergenic | 25.0% |
| ! | CAAGCAAATGTATAACATTA+GGG | - | chr4_3:41346276-41346295 | None:intergenic | 25.0% |
| ! | ACAAGCAAATGTATAACATT+AGG | - | chr4_3:41346277-41346296 | None:intergenic | 25.0% |
| !! | TGTTTTTCATATTGATCAGA+TGG | + | chr4_3:41346332-41346351 | Msa0641290:intron | 25.0% |
| ! | GATTCTAATATAATAACACC+AGG | + | chr4_3:41346616-41346635 | Msa0641290:CDS | 25.0% |
| ! | TTAAGGGTTATATTTCTTCA+AGG | + | chr4_3:41346671-41346690 | Msa0641290:CDS | 25.0% |
| !!! | TCGTTAATGTTTTTTGACTT+AGG | + | chr4_3:41346839-41346858 | Msa0641290:intron | 25.0% |
| ! | TCTCTTAGAATTGAAAAATG+AGG | - | chr4_3:41347112-41347131 | None:intergenic | 25.0% |
| !!! | TCATTTTTCAATTCTAAGAG+AGG | + | chr4_3:41347111-41347130 | Msa0641290:CDS | 25.0% |
| !!! | AATTCTAAGAGAGGTTATTT+TGG | + | chr4_3:41347120-41347139 | Msa0641290:intron | 25.0% |
| ! | CATATATTCAACCTAACTAT+AGG | - | chr4_3:41347941-41347960 | None:intergenic | 25.0% |
| ! | ACCATTATATGAAAACAGTT+AGG | + | chr4_3:41348191-41348210 | Msa0641290:intron | 25.0% |
| ! | CCATTATATGAAAACAGTTA+GGG | + | chr4_3:41348192-41348211 | Msa0641290:intron | 25.0% |
| ! | CATTATATGAAAACAGTTAG+GGG | + | chr4_3:41348193-41348212 | Msa0641290:intron | 25.0% |
| ! | GAAAAATTCATTCTTAAGGT+TGG | + | chr4_3:41348251-41348270 | Msa0641290:CDS | 25.0% |
| ! | TGCGTATACTATTTGAAAAA+TGG | + | chr4_3:41348368-41348387 | Msa0641290:intron | 25.0% |
| !! | ATGGATTAATTATGCATTCA+TGG | + | chr4_3:41348387-41348406 | Msa0641290:intron | 25.0% |
| ! | AGCAAATGCATAAAAGATAA+AGG | + | chr4_3:41348670-41348689 | Msa0641290:CDS | 25.0% |
| ! | GCAAATGCATAAAAGATAAA+GGG | + | chr4_3:41348671-41348690 | Msa0641290:CDS | 25.0% |
| ! | CAAATGCATAAAAGATAAAG+GGG | + | chr4_3:41348672-41348691 | Msa0641290:CDS | 25.0% |
| !! | CCAATTTTATCTAAAAAGGA+TGG | - | chr4_3:41348886-41348905 | None:intergenic | 25.0% |
| !! | CCATCCTTTTTAGATAAAAT+TGG | + | chr4_3:41348883-41348902 | Msa0641290:intron | 25.0% |
| !! | GTTCCCAATTTTATCTAAAA+AGG | - | chr4_3:41348890-41348909 | None:intergenic | 25.0% |
| ! | TAGATAAAATTGGGAACATT+TGG | + | chr4_3:41348893-41348912 | Msa0641290:intron | 25.0% |
| !! | TTATAAAGAGAAGTTTTCTG+TGG | + | chr4_3:41348931-41348950 | Msa0641290:CDS | 25.0% |
| ! | AAAAATAAGAAAGTCTCTGT+AGG | - | chr4_3:41349014-41349033 | None:intergenic | 25.0% |
| ! | AATTAAATCGGACAACAAAA+AGG | + | chr4_3:41349246-41349265 | Msa0641290:intron | 25.0% |
| !! | ATCTAGGTTTGAACATTTTA+AGG | - | chr4_3:41349297-41349316 | None:intergenic | 25.0% |
| !! | TTATTTTCTCTGTTCAATCA+AGG | - | chr4_3:41349324-41349343 | None:intergenic | 25.0% |
| !!! | TTTTAAAAACTGAAGCGAAA+CGG | - | chr4_3:41349393-41349412 | None:intergenic | 25.0% |
| !! | ACACTTAAAAGTTGATCAAA+AGG | - | chr4_3:41349602-41349621 | None:intergenic | 25.0% |
| !! | AAGAAAATTACCTCTTTTGA+GGG | - | chr4_3:41349628-41349647 | None:intergenic | 25.0% |
| !! | TAAGAAAATTACCTCTTTTG+AGG | - | chr4_3:41349629-41349648 | None:intergenic | 25.0% |
| ! | AAGAATGTTATTAGATGTGA+TGG | - | chr4_3:41349676-41349695 | None:intergenic | 25.0% |
| !! | GACCTTATTTATACAAACAA+AGG | - | chr4_3:41350106-41350125 | None:intergenic | 25.0% |
| !! | TAATCACTTCTATTTTCTCT+AGG | + | chr4_3:41350351-41350370 | Msa0641290:intron | 25.0% |
| !!! | TTTCAGCTAAAAGTCTTTTT+TGG | - | chr4_3:41350462-41350481 | None:intergenic | 25.0% |
| ! | ATTTCCAACTATGTTAATGT+AGG | + | chr4_3:41350575-41350594 | Msa0641290:intron | 25.0% |
| ! | CTCACTTAAGTTAAACAAAT+TGG | + | chr4_3:41350677-41350696 | Msa0641290:CDS | 25.0% |
| !! | AAGAAGCTGAACATATTTTT+CGG | - | chr4_3:41350743-41350762 | None:intergenic | 25.0% |
| ! | AGAAAACATAAGACAAAACA+CGG | - | chr4_3:41350808-41350827 | None:intergenic | 25.0% |
| !! | AACAAGATTTTTACCTTTTC+CGG | - | chr4_3:41351073-41351092 | None:intergenic | 25.0% |
| !! | TCATTAGCTAACAAATTTTC+TGG | - | chr4_3:41351141-41351160 | None:intergenic | 25.0% |
| ! | AGCTAATGACAAAATTGATT+AGG | + | chr4_3:41351152-41351171 | Msa0641290:intron | 25.0% |
| ! | AATGACAAAATTGATTAGGA+TGG | + | chr4_3:41351156-41351175 | Msa0641290:intron | 25.0% |
| ! | TGAAAATGACATAAATGAGA+CGG | + | chr4_3:41351335-41351354 | Msa0641290:CDS | 25.0% |
| ! | AATGTAATACAATCTACAGT+CGG | - | chr4_3:41351503-41351522 | None:intergenic | 25.0% |
| ! | TAAATTGAATCTTCTGTAGT+TGG | - | chr4_3:41351568-41351587 | None:intergenic | 25.0% |
| !! | TCATTAGGTTGTTTATGAAA+AGG | - | chr4_3:41351839-41351858 | None:intergenic | 25.0% |
| !!! | GAAATGATTATTTTGGCTTT+GGG | + | chr4_3:41352167-41352186 | Msa0641290:three_prime_UTR | 25.0% |
| ! | TTTGATTAAACCACAATTAG+TGG | + | chr4_3:41352268-41352287 | Msa0641290:three_prime_UTR | 25.0% |
| !!! | GTTTCTCTTTTGTTGGTTTA+GGG | - | chr4_3:41345117-41345136 | None:intergenic | 30.0% |
| !!! | TGTTTCTCTTTTGTTGGTTT+AGG | - | chr4_3:41345118-41345137 | None:intergenic | 30.0% |
| ! | GTACTATGTTTCTCTTTTGT+TGG | - | chr4_3:41345124-41345143 | None:intergenic | 30.0% |
| CTATTGAGAAGTTGTGATTA+TGG | + | chr4_3:41345143-41345162 | Msa0641290:exon | 30.0% | |
| AGTAACCATCTATAAAACGA+TGG | - | chr4_3:41345174-41345193 | None:intergenic | 30.0% | |
| TTAATGTCTTCAAACACCTT+TGG | - | chr4_3:41345207-41345226 | None:intergenic | 30.0% | |
| CATTTGTAGTGTTTGTGTTA+GGG | - | chr4_3:41345230-41345249 | None:intergenic | 30.0% | |
| ACATTTGTAGTGTTTGTGTT+AGG | - | chr4_3:41345231-41345250 | None:intergenic | 30.0% | |
| TAACACAAACACTACAAATG+TGG | + | chr4_3:41345230-41345249 | Msa0641290:CDS | 30.0% | |
| ! | TTGTTGTTGCTATCATCATT+AGG | - | chr4_3:41345309-41345328 | None:intergenic | 30.0% |
| AAGCTATTGTATATGGCTAT+TGG | + | chr4_3:41345498-41345517 | Msa0641290:CDS | 30.0% | |
| ! | GTAACAACTCATTCACATTT+TGG | + | chr4_3:41345652-41345671 | Msa0641290:intron | 30.0% |
| TGATTGAACATGTGTGTTAT+CGG | + | chr4_3:41345827-41345846 | Msa0641290:intron | 30.0% | |
| GAACTTATGAAAGCAACTTA+TGG | + | chr4_3:41345965-41345984 | Msa0641290:intron | 30.0% | |
| CATGACAAGCACTTATATAT+CGG | - | chr4_3:41346108-41346127 | None:intergenic | 30.0% | |
| GGAAATGTACTAATACACTA+TGG | - | chr4_3:41346232-41346251 | None:intergenic | 30.0% | |
| CAAATTTCAAAGGCTCTTAA+GGG | + | chr4_3:41346655-41346674 | Msa0641290:CDS | 30.0% | |
| TTCTGATTATGATCCAAACA+CGG | + | chr4_3:41346938-41346957 | Msa0641290:CDS | 30.0% | |
| !!! | AACTTTTTATTTTGGTGTGC+AGG | + | chr4_3:41347048-41347067 | Msa0641290:intron | 30.0% |
| ACTAAAGCCAAAAGGATAAA+GGG | - | chr4_3:41347242-41347261 | None:intergenic | 30.0% | |
| TACTAAAGCCAAAAGGATAA+AGG | - | chr4_3:41347243-41347262 | None:intergenic | 30.0% | |
| ATCACATTACTAAAGCCAAA+AGG | - | chr4_3:41347250-41347269 | None:intergenic | 30.0% | |
| ATGCTTCGTAGATTTCAAAT+AGG | - | chr4_3:41347307-41347326 | None:intergenic | 30.0% | |
| TTGAATGTAATTACACGTGT+TGG | + | chr4_3:41347379-41347398 | Msa0641290:intron | 30.0% | |
| !! | TTGAAATACAATTTGCTGAG+TGG | + | chr4_3:41347461-41347480 | Msa0641290:intron | 30.0% |
| AATTAATTCTTTGCATGTGC+AGG | + | chr4_3:41347489-41347508 | Msa0641290:intron | 30.0% | |
| ! | AGATCAAAGACGAAGTTTTT+GGG | - | chr4_3:41347811-41347830 | None:intergenic | 30.0% |
| ! | AAGATCAAAGACGAAGTTTT+TGG | - | chr4_3:41347812-41347831 | None:intergenic | 30.0% |
| ! | ATCTTCATTTGTTTCTTTGC+TGG | + | chr4_3:41347853-41347872 | Msa0641290:CDS | 30.0% |
| ! | TTGTATGGTTCCATTTTGTT+AGG | + | chr4_3:41347993-41348012 | Msa0641290:intron | 30.0% |
| ! | TGTATGGTTCCATTTTGTTA+GGG | + | chr4_3:41347994-41348013 | Msa0641290:intron | 30.0% |
| AAGAAAGAGTTCAGTAAACT+TGG | + | chr4_3:41348045-41348064 | Msa0641290:CDS | 30.0% | |
| ATATCTTGTGGACATAAACA+AGG | + | chr4_3:41348071-41348090 | Msa0641290:CDS | 30.0% | |
| ! | CCCTAACTGTTTTCATATAA+TGG | - | chr4_3:41348195-41348214 | None:intergenic | 30.0% |
| GAAGAAGTAAGTACTCATAT+TGG | + | chr4_3:41348556-41348575 | Msa0641290:intron | 30.0% | |
| !!! | TTTCCTTTTTAGCTCAATGT+CGG | - | chr4_3:41348966-41348985 | None:intergenic | 30.0% |
| GATGAGAGATTTCAATTTGT+AGG | + | chr4_3:41349127-41349146 | Msa0641290:intron | 30.0% | |
| AATGGCCATTTAATACAGTT+TGG | - | chr4_3:41349347-41349366 | None:intergenic | 30.0% | |
| TGTATTAAATGGCCATTCAA+AGG | + | chr4_3:41349350-41349369 | Msa0641290:intron | 30.0% | |
| !!! | CGCTTCAGTTTTTAAAACAA+TGG | + | chr4_3:41349396-41349415 | Msa0641290:intron | 30.0% |
| AAATCATCGCTGAAAAATAC+AGG | + | chr4_3:41349486-41349505 | Msa0641290:intron | 30.0% | |
| !! | AGGTTTTATCCATTCCATTA+TGG | + | chr4_3:41349506-41349525 | Msa0641290:intron | 30.0% |
| !! | GTGAGAGTAAATTTTGAGAA+AGG | + | chr4_3:41349563-41349582 | Msa0641290:CDS | 30.0% |
| AGTTGATCAAAAGGTAAGAA+TGG | - | chr4_3:41349593-41349612 | None:intergenic | 30.0% | |
| !! | AATATTTGACTTGTATCCTC+AGG | + | chr4_3:41349789-41349808 | Msa0641290:CDS | 30.0% |
| !! | ATATTTGACTTGTATCCTCA+GGG | + | chr4_3:41349790-41349809 | Msa0641290:CDS | 30.0% |
| AAAATTAAAAGCTTACCCTG+AGG | - | chr4_3:41349808-41349827 | None:intergenic | 30.0% | |
| !! | ATGCAGTATTTGTGTTGATT+AGG | + | chr4_3:41350046-41350065 | Msa0641290:intron | 30.0% |
| ! | GCCCTTTGTTTGTATAAATA+AGG | + | chr4_3:41350101-41350120 | Msa0641290:intron | 30.0% |
| TGTTCAATTAGGAACCTTAT+TGG | + | chr4_3:41350157-41350176 | Msa0641290:intron | 30.0% | |
| !!! | ATTAGGAACCTTATTGGTTT+TGG | + | chr4_3:41350163-41350182 | Msa0641290:intron | 30.0% |
| !!! | TTAGGAACCTTATTGGTTTT+GGG | + | chr4_3:41350164-41350183 | Msa0641290:intron | 30.0% |
| TTCTCTAGGTATTATGATTG+CGG | + | chr4_3:41350365-41350384 | Msa0641290:intron | 30.0% | |
| TGTATGCAAACTTCCATATA+TGG | + | chr4_3:41350435-41350454 | Msa0641290:CDS | 30.0% | |
| !!! | AGTCTTTTTTGGTCCATATA+TGG | - | chr4_3:41350451-41350470 | None:intergenic | 30.0% |
| ! | GAAATTCAGTTGAAGTTGAT+AGG | + | chr4_3:41350613-41350632 | Msa0641290:CDS | 30.0% |
| !!! | GCAAATTTTTTCTGCTAACT+TGG | - | chr4_3:41350658-41350677 | None:intergenic | 30.0% |
| ACAAATTGGATACAAGCATA+AGG | + | chr4_3:41350691-41350710 | Msa0641290:CDS | 30.0% | |
| !!! | TCATATTTTTTTAGCAGCGA+CGG | + | chr4_3:41350827-41350846 | Msa0641290:intron | 30.0% |
| GGAAAAGGTAAAAATCTTGT+TGG | + | chr4_3:41351072-41351091 | Msa0641290:intron | 30.0% | |
| AATTGATTAGGATGGACAAA+AGG | + | chr4_3:41351164-41351183 | Msa0641290:intron | 30.0% | |
| ACCTAATATTACTAGGGTTT+AGG | + | chr4_3:41351215-41351234 | Msa0641290:intron | 30.0% | |
| ACCTAAACCCTAGTAATATT+AGG | - | chr4_3:41351219-41351238 | None:intergenic | 30.0% | |
| ATGATAGTCTGCAAAACAAA+TGG | - | chr4_3:41351315-41351334 | None:intergenic | 30.0% | |
| ! | AGTCAGCAATATAATCGTTT+TGG | + | chr4_3:41351375-41351394 | Msa0641290:CDS | 30.0% |
| ! | GTCAGCAATATAATCGTTTT+GGG | + | chr4_3:41351376-41351395 | Msa0641290:CDS | 30.0% |
| CAAAATAGACCAATTACAGT+CGG | + | chr4_3:41351464-41351483 | Msa0641290:intron | 30.0% | |
| GGTCAAATAATCAAGACAAT+TGG | + | chr4_3:41351621-41351640 | Msa0641290:intron | 30.0% | |
| CAAATAATCAAGACAATTGG+AGG | + | chr4_3:41351624-41351643 | Msa0641290:CDS | 30.0% | |
| CATAAACAACCTAATGATCA+TGG | + | chr4_3:41351842-41351861 | Msa0641290:CDS | 30.0% | |
| AGAATTTCAATGTGTACACA+TGG | + | chr4_3:41351927-41351946 | Msa0641290:CDS | 30.0% | |
| ! | TGTAAAGTGTTTAATGGATG+TGG | + | chr4_3:41352060-41352079 | Msa0641290:intron | 30.0% |
| ! | TTACTGAAGAACATTGCTTT+TGG | + | chr4_3:41352139-41352158 | Msa0641290:three_prime_UTR | 30.0% |
| !!! | CGAAATGATTATTTTGGCTT+TGG | + | chr4_3:41352166-41352185 | Msa0641290:three_prime_UTR | 30.0% |
| AATTAAGAACTAAAGCAGCA+GGG | - | chr4_3:41352304-41352323 | None:intergenic | 30.0% | |
| AAATTAAGAACTAAAGCAGC+AGG | - | chr4_3:41352305-41352324 | None:intergenic | 30.0% | |
| ! | GTGTTCCATCGTTTTATAGA+TGG | + | chr4_3:41345166-41345185 | Msa0641290:CDS | 35.0% |
| TCATCATTAGGATGGAAACA+AGG | - | chr4_3:41345297-41345316 | None:intergenic | 35.0% | |
| TGTTGCTATCATCATTAGGA+TGG | - | chr4_3:41345305-41345324 | None:intergenic | 35.0% | |
| AACACTTCCACAAATGTTGT+TGG | - | chr4_3:41345426-41345445 | None:intergenic | 35.0% | |
| ACTTATTTGAGCTTATGTGC+TGG | + | chr4_3:41345915-41345934 | Msa0641290:intron | 35.0% | |
| !! | GCTGTTTTCGTAAGTAATCT+TGG | - | chr4_3:41346031-41346050 | None:intergenic | 35.0% |
| ! | TATAACATTAGGGGCTTGTT+TGG | - | chr4_3:41346266-41346285 | None:intergenic | 35.0% |
| !! | TAAAACGTCTAGTTCTTTGC+TGG | - | chr4_3:41346382-41346401 | None:intergenic | 35.0% |
| ! | TGGTTGAATGATTTAAGGCT+TGG | + | chr4_3:41346476-41346495 | Msa0641290:intron | 35.0% |
| CTTGTATTTATAGGAAGTCG+AGG | + | chr4_3:41346522-41346541 | Msa0641290:intron | 35.0% | |
| ACTGAGGAAGGAATTTGAAA+TGG | + | chr4_3:41346552-41346571 | Msa0641290:CDS | 35.0% | |
| ! | AGGAAGGAATTTGAAATGGA+AGG | + | chr4_3:41346556-41346575 | Msa0641290:CDS | 35.0% |
| !! | GACACTTCACATTCTTGTTT+TGG | - | chr4_3:41346595-41346614 | None:intergenic | 35.0% |
| GTTCATGCACCAAATTTCAA+AGG | + | chr4_3:41346645-41346664 | Msa0641290:CDS | 35.0% | |
| !! | CCTTAAGAGCCTTTGAAATT+TGG | - | chr4_3:41346657-41346676 | None:intergenic | 35.0% |
| CCAAATTTCAAAGGCTCTTA+AGG | + | chr4_3:41346654-41346673 | Msa0641290:CDS | 35.0% | |
| !! | TCCATTATGGAAGGGTATTA+TGG | + | chr4_3:41346705-41346724 | Msa0641290:CDS | 35.0% |
| ACCATAATACCCTTCCATAA+TGG | - | chr4_3:41346709-41346728 | None:intergenic | 35.0% | |
| ATGCTAATGTTCCTGAAGAA+GGG | + | chr4_3:41346874-41346893 | Msa0641290:CDS | 35.0% | |
| TATGGATCGGTATCAAATCT+TGG | + | chr4_3:41346972-41346991 | Msa0641290:intron | 35.0% | |
| ATGACAGTCCAAGCATTATA+AGG | - | chr4_3:41347081-41347100 | None:intergenic | 35.0% | |
| GAATTGAAAAATGAGGCTCA+TGG | - | chr4_3:41347105-41347124 | None:intergenic | 35.0% | |
| ! | GATGAAACCCTTTATCCTTT+TGG | + | chr4_3:41347232-41347251 | Msa0641290:intron | 35.0% |
| ! | ACACCTTCAATCTAGAATGT+TGG | + | chr4_3:41347427-41347446 | Msa0641290:intron | 35.0% |
| GAACCAACATTCTAGATTGA+AGG | - | chr4_3:41347433-41347452 | None:intergenic | 35.0% | |
| TCTTGCATATTTGGTTGTTG+AGG | + | chr4_3:41347749-41347768 | Msa0641290:CDS | 35.0% | |
| CTTGCATATTTGGTTGTTGA+GGG | + | chr4_3:41347750-41347769 | Msa0641290:CDS | 35.0% | |
| ACCTCATGAATATCCAAAGA+TGG | - | chr4_3:41347901-41347920 | None:intergenic | 35.0% | |
| TCAATTGCACCCTAACAAAA+TGG | - | chr4_3:41348006-41348025 | None:intergenic | 35.0% | |
| AAAGAGTTCAGTAAACTTGG+TGG | + | chr4_3:41348048-41348067 | Msa0641290:CDS | 35.0% | |
| ! | TAAACTTGGTGGATATCTTG+TGG | + | chr4_3:41348059-41348078 | Msa0641290:CDS | 35.0% |
| TTATGCATTCATGGACTCAT+TGG | + | chr4_3:41348396-41348415 | Msa0641290:intron | 35.0% | |
| ACAGAATGCATGTGATTACA+TGG | + | chr4_3:41348450-41348469 | Msa0641290:CDS | 35.0% | |
| AGACTGAAGACAAACATTGT+CGG | - | chr4_3:41348533-41348552 | None:intergenic | 35.0% | |
| ! | AAAGGGGACTTGTTTAAAAG+CGG | + | chr4_3:41348688-41348707 | Msa0641290:CDS | 35.0% |
| ACAAATGTAAAAGGCCAACA+GGG | - | chr4_3:41348746-41348765 | None:intergenic | 35.0% | |
| AACAAATGTAAAAGGCCAAC+AGG | - | chr4_3:41348747-41348766 | None:intergenic | 35.0% | |
| ! | TAAAGAGAAGTTTTCTGTGG+AGG | + | chr4_3:41348934-41348953 | Msa0641290:CDS | 35.0% |
| ! | AAAGAGAAGTTTTCTGTGGA+GGG | + | chr4_3:41348935-41348954 | Msa0641290:CDS | 35.0% |
| AGAATAGCAGTTGTCTATGA+CGG | - | chr4_3:41349072-41349091 | None:intergenic | 35.0% | |
| ! | TAGGTTCAAAAGTACACTGA+AGG | + | chr4_3:41349146-41349165 | Msa0641290:intron | 35.0% |
| ! | ACTTTTCAGAAGTTGCTTCA+TGG | + | chr4_3:41349192-41349211 | Msa0641290:CDS | 35.0% |
| GTTCAATCAAGGTTTCATCT+AGG | - | chr4_3:41349313-41349332 | None:intergenic | 35.0% | |
| TAAACGTGTCAACCTTTGAA+TGG | - | chr4_3:41349365-41349384 | None:intergenic | 35.0% | |
| ! | TGTGTCATGCATTTTATGAG+TGG | + | chr4_3:41349455-41349474 | Msa0641290:intron | 35.0% |
| ATCAATTGTGCATAGGCTTT+AGG | - | chr4_3:41349751-41349770 | None:intergenic | 35.0% | |
| ATCCAACATCAATTGTGCAT+AGG | - | chr4_3:41349758-41349777 | None:intergenic | 35.0% | |
| AATCTGACTCATACACTGTT+AGG | + | chr4_3:41349936-41349955 | Msa0641290:intron | 35.0% | |
| TAATCCATTCTTGAGATCTC+TGG | - | chr4_3:41350485-41350504 | None:intergenic | 35.0% | |
| CCTTCCTACATTAACATAGT+TGG | - | chr4_3:41350582-41350601 | None:intergenic | 35.0% | |
| CCAACTATGTTAATGTAGGA+AGG | + | chr4_3:41350579-41350598 | Msa0641290:intron | 35.0% | |
| !! | AGTTGAAGTTGATAGGTTGT+TGG | + | chr4_3:41350620-41350639 | Msa0641290:CDS | 35.0% |
| ! | AGATTTTTACCTTTTCCGGA+AGG | - | chr4_3:41351069-41351088 | None:intergenic | 35.0% |
| AGTCTGCAAAACAAATGGAA+TGG | - | chr4_3:41351310-41351329 | None:intergenic | 35.0% | |
| !! | AGCAATATAATCGTTTTGGG+AGG | + | chr4_3:41351379-41351398 | Msa0641290:CDS | 35.0% |
| !!! | TATAATCGTTTTGGGAGGTA+CGG | + | chr4_3:41351384-41351403 | Msa0641290:intron | 35.0% |
| AATCCACACACAAAGTAAAC+GGG | - | chr4_3:41351430-41351449 | None:intergenic | 35.0% | |
| CAATCCACACACAAAGTAAA+CGG | - | chr4_3:41351431-41351450 | None:intergenic | 35.0% | |
| !! | CGACTGTAATTGGTCTATTT+TGG | - | chr4_3:41351466-41351485 | None:intergenic | 35.0% |
| CACATAAAACCGACTGTAAT+TGG | - | chr4_3:41351476-41351495 | None:intergenic | 35.0% | |
| !! | CAATTACAGTCGGTTTTATG+TGG | + | chr4_3:41351474-41351493 | Msa0641290:intron | 35.0% |
| !! | ATCTTCTGTAGTTGGCTTTA+TGG | - | chr4_3:41351560-41351579 | None:intergenic | 35.0% |
| ACCAAAACTAGTTGAGTTAG+GGG | - | chr4_3:41351684-41351703 | None:intergenic | 35.0% | |
| CACCAAAACTAGTTGAGTTA+GGG | - | chr4_3:41351685-41351704 | None:intergenic | 35.0% | |
| AAACAACCTAATGATCATGG+AGG | + | chr4_3:41351845-41351864 | Msa0641290:CDS | 35.0% | |
| GTGATTCAAAGGATAGAAGT+CGG | + | chr4_3:41351996-41352015 | Msa0641290:CDS | 35.0% | |
| AGGGTAAAAGTGAAAACAGT+TGG | + | chr4_3:41352104-41352123 | Msa0641290:intron | 35.0% | |
| ! | GGTGGTCGAAATGATTATTT+TGG | + | chr4_3:41352160-41352179 | Msa0641290:three_prime_UTR | 35.0% |
| TTAGGCAAATCCACTAATTG+TGG | - | chr4_3:41352281-41352300 | None:intergenic | 35.0% | |
| ACTTCCACAAATGTTGTTGG+AGG | - | chr4_3:41345423-41345442 | None:intergenic | 40.0% | |
| AAGCGAGACTGGAATTTGTA+GGG | - | chr4_3:41345693-41345712 | None:intergenic | 40.0% | |
| TCTCGCTTGCAATAGTACTA+AGG | + | chr4_3:41345705-41345724 | Msa0641290:intron | 40.0% | |
| ! | GAAGTGTTCGTACTATGTGA+TGG | - | chr4_3:41345807-41345826 | None:intergenic | 40.0% |
| TGCTTGTGTTTATCTCAAGC+AGG | + | chr4_3:41346205-41346224 | Msa0641290:intron | 40.0% | |
| GCTTGTGTTTATCTCAAGCA+GGG | + | chr4_3:41346206-41346225 | Msa0641290:intron | 40.0% | |
| !! | GCTTGTTTGGATTGGCTTAT+TGG | - | chr4_3:41346253-41346272 | None:intergenic | 40.0% |
| TACACGCATTTCATCGTCTT+TGG | - | chr4_3:41346411-41346430 | None:intergenic | 40.0% | |
| GGATATCCTCTGATCCATTA+TGG | + | chr4_3:41346692-41346711 | Msa0641290:CDS | 40.0% | |
| ATCCTCTGATCCATTATGGA+AGG | + | chr4_3:41346696-41346715 | Msa0641290:CDS | 40.0% | |
| TCCTCTGATCCATTATGGAA+GGG | + | chr4_3:41346697-41346716 | Msa0641290:CDS | 40.0% | |
| GATGCTAATGTTCCTGAAGA+AGG | + | chr4_3:41346873-41346892 | Msa0641290:CDS | 40.0% | |
| TGCTAATGTTCCTGAAGAAG+GGG | + | chr4_3:41346875-41346894 | Msa0641290:CDS | 40.0% | |
| ATCTTATGTTCCCCTTCTTC+AGG | - | chr4_3:41346888-41346907 | None:intergenic | 40.0% | |
| TCATTCATAAGGAAACAGCG+TGG | + | chr4_3:41346912-41346931 | Msa0641290:CDS | 40.0% | |
| ATACCGATCCATATAGACAG+TGG | - | chr4_3:41346965-41346984 | None:intergenic | 40.0% | |
| GATGCTGACCTTATAATGCT+TGG | + | chr4_3:41347070-41347089 | Msa0641290:CDS | 40.0% | |
| TGCAGCTTCTCATAGTAGTT+AGG | - | chr4_3:41347520-41347539 | None:intergenic | 40.0% | |
| GATTAAACCTTGAACCGCTT+TGG | - | chr4_3:41347553-41347572 | None:intergenic | 40.0% | |
| !! | TCAAAGACGAAGTTTTTGGG+AGG | - | chr4_3:41347808-41347827 | None:intergenic | 40.0% |
| ACTTCGTCTTTGATCTTGAG+CGG | + | chr4_3:41347815-41347834 | Msa0641290:CDS | 40.0% | |
| ATATCCAAAGATGGCAAGTG+AGG | - | chr4_3:41347892-41347911 | None:intergenic | 40.0% | |
| GCCATCTTTGGATATTCATG+AGG | + | chr4_3:41347897-41347916 | Msa0641290:CDS | 40.0% | |
| AAACAGTTAGGGGAGAAACA+TGG | + | chr4_3:41348203-41348222 | Msa0641290:intron | 40.0% | |
| !!! | GGTATTCACTTTTTCCCTGT+TGG | + | chr4_3:41348729-41348748 | Msa0641290:intron | 40.0% |
| AGGCAGTTTGAACATGAACT+AGG | - | chr4_3:41349277-41349296 | None:intergenic | 40.0% | |
| ! | GCAAATGGACCATAATGGAA+TGG | - | chr4_3:41349518-41349537 | None:intergenic | 40.0% |
| CCATTATGGTCCATTTGCTT+CGG | + | chr4_3:41349520-41349539 | Msa0641290:CDS | 40.0% | |
| TCCATTTGCTTCGGACTTAA+AGG | + | chr4_3:41349529-41349548 | Msa0641290:CDS | 40.0% | |
| CCATTTGCTTCGGACTTAAA+GGG | + | chr4_3:41349530-41349549 | Msa0641290:CDS | 40.0% | |
| TAAGTGTTCTCCCTCAAAAG+AGG | + | chr4_3:41349615-41349634 | Msa0641290:CDS | 40.0% | |
| AGCCTATGCACAATTGATGT+TGG | + | chr4_3:41349753-41349772 | Msa0641290:CDS | 40.0% | |
| CTCATACACTGTTAGGTATC+CGG | + | chr4_3:41349943-41349962 | Msa0641290:intron | 40.0% | |
| AGTTACCCTATCAATACCAC+CGG | - | chr4_3:41349965-41349984 | None:intergenic | 40.0% | |
| !! | TGTGTTGATTAGGAGCAGTT+AGG | + | chr4_3:41350056-41350075 | Msa0641290:intron | 40.0% |
| GCAGTTAGGCAGTTTATTAC+AGG | + | chr4_3:41350070-41350089 | Msa0641290:intron | 40.0% | |
| TTTGAATTCCCCTTCTGTTG+TGG | - | chr4_3:41350135-41350154 | None:intergenic | 40.0% | |
| AGAGAAATGTCTCTTCTCTG+AGG | + | chr4_3:41350192-41350211 | Msa0641290:intron | 40.0% | |
| !!! | TTTTGCTCTGGGATTACAGA+GGG | + | chr4_3:41350218-41350237 | Msa0641290:intron | 40.0% |
| GAAACCAGAGATCTCAAGAA+TGG | + | chr4_3:41350478-41350497 | Msa0641290:CDS | 40.0% | |
| ! | GTTGATAGGTTGTTGGTTAG+TGG | + | chr4_3:41350627-41350646 | Msa0641290:CDS | 40.0% |
| CATGTTCAGCATCTACTATC+TGG | + | chr4_3:41351037-41351056 | Msa0641290:CDS | 40.0% | |
| ACTATCTGGTGTAAACCTTC+CGG | + | chr4_3:41351051-41351070 | Msa0641290:CDS | 40.0% | |
| GATTAGGATGGACAAAAGGA+AGG | + | chr4_3:41351168-41351187 | Msa0641290:intron | 40.0% | |
| TAGGTTGCGATATGGTATCT+TGG | + | chr4_3:41351234-41351253 | Msa0641290:intron | 40.0% | |
| TATGGTATCTTGGTCTCTTG+TGG | + | chr4_3:41351244-41351263 | Msa0641290:intron | 40.0% | |
| ACATAAATGAGACGGTACTG+TGG | + | chr4_3:41351343-41351362 | Msa0641290:CDS | 40.0% | |
| TTTCCCGTTTACTTTGTGTG+TGG | + | chr4_3:41351424-41351443 | Msa0641290:intron | 40.0% | |
| CCAAAACTAGTTGAGTTAGG+GGG | - | chr4_3:41351683-41351702 | None:intergenic | 40.0% | |
| CCACCAAAACTAGTTGAGTT+AGG | - | chr4_3:41351686-41351705 | None:intergenic | 40.0% | |
| !!! | CCTAACTCAACTAGTTTTGG+TGG | + | chr4_3:41351683-41351702 | Msa0641290:CDS | 40.0% |
| ! | GCTCCTTTGTGAATTGATTC+CGG | - | chr4_3:41351734-41351753 | None:intergenic | 40.0% |
| GAATCAATTCACAAAGGAGC+TGG | + | chr4_3:41351734-41351753 | Msa0641290:CDS | 40.0% | |
| ATCTCATGATCGATCCTTTC+TGG | - | chr4_3:41351788-41351807 | None:intergenic | 40.0% | |
| TACGATCCTCCATGATCATT+AGG | - | chr4_3:41351854-41351873 | None:intergenic | 40.0% | |
| CCTAAATGAGCTGTTGGAAT+TGG | - | chr4_3:41351966-41351985 | None:intergenic | 40.0% | |
| CCAATTCCAACAGCTCATTT+AGG | + | chr4_3:41351963-41351982 | Msa0641290:CDS | 40.0% | |
| TCCTTTGAATCACTCCATTG+AGG | - | chr4_3:41351989-41352008 | None:intergenic | 40.0% | |
| ATTCAAAGGATAGAAGTCGG+TGG | + | chr4_3:41351999-41352018 | Msa0641290:CDS | 40.0% | |
| !! | CTGAAGAACATTGCTTTTGG+TGG | + | chr4_3:41352142-41352161 | Msa0641290:three_prime_UTR | 40.0% |
| TGCTCCTCCAACAACATTTG+TGG | + | chr4_3:41345416-41345435 | Msa0641290:CDS | 45.0% | |
| GCCTCGCAAGCTATTGTATA+TGG | + | chr4_3:41345491-41345510 | Msa0641290:CDS | 45.0% | |
| ! | GCCATATACAATAGCTTGCG+AGG | - | chr4_3:41345495-41345514 | None:intergenic | 45.0% |
| !! | CACATTTTGGCCAACCTAAG+TGG | + | chr4_3:41345665-41345684 | Msa0641290:intron | 45.0% |
| GAATTTGTAGGGGACCACTT+AGG | - | chr4_3:41345682-41345701 | None:intergenic | 45.0% | |
| AGCGAGACTGGAATTTGTAG+GGG | - | chr4_3:41345692-41345711 | None:intergenic | 45.0% | |
| CAAGCGAGACTGGAATTTGT+AGG | - | chr4_3:41345694-41345713 | None:intergenic | 45.0% | |
| AGTACTATTGCAAGCGAGAC+TGG | - | chr4_3:41345704-41345723 | None:intergenic | 45.0% | |
| ATCGGTCATGTGTCACAAGT+CGG | + | chr4_3:41345845-41345864 | Msa0641290:intron | 45.0% | |
| CAAACAGGCCCATAGTGTAT+AGG | + | chr4_3:41346169-41346188 | Msa0641290:intron | 45.0% | |
| ! | CATTAGGGGCTTGTTTGGAT+TGG | - | chr4_3:41346261-41346280 | None:intergenic | 45.0% |
| !! | ACCCTTCCATAATGGATCAG+AGG | - | chr4_3:41346701-41346720 | None:intergenic | 45.0% |
| TATAGACAGTGGACCGTGTT+TGG | - | chr4_3:41346954-41346973 | None:intergenic | 45.0% | |
| AACACGGTCCACTGTCTATA+TGG | + | chr4_3:41346954-41346973 | Msa0641290:CDS | 45.0% | |
| GGTCCACTGTCTATATGGAT+CGG | + | chr4_3:41346959-41346978 | Msa0641290:CDS | 45.0% | |
| ! | TGGTGTCAGACATTGACATG+TGG | + | chr4_3:41347399-41347418 | Msa0641290:intron | 45.0% |
| TGCAACCAAATGCTCCAAAG+CGG | + | chr4_3:41347536-41347555 | Msa0641290:CDS | 45.0% | |
| !! | TTGAACCGCTTTGGAGCATT+TGG | - | chr4_3:41347544-41347563 | None:intergenic | 45.0% |
| AAATGCTCCAAAGCGGTTCA+AGG | + | chr4_3:41347543-41347562 | Msa0641290:CDS | 45.0% | |
| GCTTGCAGCTCTTGCATATT+TGG | + | chr4_3:41347740-41347759 | Msa0641290:intron | 45.0% | |
| GTCGCGTGTGTTTGATTGTA+TGG | + | chr4_3:41347978-41347997 | Msa0641290:intron | 45.0% | |
| CGGAGATTTCTTGACTGACA+AGG | + | chr4_3:41348708-41348727 | Msa0641290:CDS | 45.0% | |
| !!! | CCTTTTTAGCTCAATGTCGG+CGG | - | chr4_3:41348963-41348982 | None:intergenic | 45.0% |
| CGCTTTCGTAGAGTTTGAGA+AGG | - | chr4_3:41349049-41349068 | None:intergenic | 45.0% | |
| AGTACACTGAAGGATTGCTG+TGG | + | chr4_3:41349156-41349175 | Msa0641290:CDS | 45.0% | |
| GTACACTGAAGGATTGCTGT+GGG | + | chr4_3:41349157-41349176 | Msa0641290:CDS | 45.0% | |
| CAGAAGTTGCTTCATGGACA+TGG | + | chr4_3:41349198-41349217 | Msa0641290:CDS | 45.0% | |
| CCGAAGCAAATGGACCATAA+TGG | - | chr4_3:41349523-41349542 | None:intergenic | 45.0% | |
| CCCTTTAAGTCCGAAGCAAA+TGG | - | chr4_3:41349533-41349552 | None:intergenic | 45.0% | |
| !! | TAGAAGGAAAGCGCTTCATG+TGG | + | chr4_3:41349908-41349927 | Msa0641290:CDS | 45.0% |
| ATACACTGTTAGGTATCCGG+TGG | + | chr4_3:41349946-41349965 | Msa0641290:intron | 45.0% | |
| !! | AGGTATCCGGTGGTATTGAT+AGG | + | chr4_3:41349956-41349975 | Msa0641290:intron | 45.0% |
| !! | GGTATCCGGTGGTATTGATA+GGG | + | chr4_3:41349957-41349976 | Msa0641290:intron | 45.0% |
| GTCATTTGGCCACAACAGAA+GGG | + | chr4_3:41350123-41350142 | Msa0641290:intron | 45.0% | |
| TCATTTGGCCACAACAGAAG+GGG | + | chr4_3:41350124-41350143 | Msa0641290:intron | 45.0% | |
| CTCTCTGCCCAAAACCAATA+AGG | - | chr4_3:41350174-41350193 | None:intergenic | 45.0% | |
| !!! | CTTTTGCTCTGGGATTACAG+AGG | + | chr4_3:41350217-41350236 | Msa0641290:intron | 45.0% |
| !! | AATATGTGTCGGTGTCGTGT+CGG | - | chr4_3:41350323-41350342 | None:intergenic | 45.0% |
| !!! | TTTTTTAGCAGCGACGGCAT+TGG | + | chr4_3:41350833-41350852 | Msa0641290:intron | 45.0% |
| GTCAAATACGAGCATCCTGT+TGG | + | chr4_3:41351004-41351023 | Msa0641290:CDS | 45.0% | |
| AAATACGAGCATCCTGTTGG+CGG | + | chr4_3:41351007-41351026 | Msa0641290:CDS | 45.0% | |
| TGGTGTAAACCTTCCGGAAA+AGG | + | chr4_3:41351057-41351076 | Msa0641290:CDS | 45.0% | |
| !! | CTAGGGTTTAGGTTGCGATA+TGG | + | chr4_3:41351226-41351245 | Msa0641290:intron | 45.0% |
| ATCTTGGTCTCTTGTGGTCT+TGG | + | chr4_3:41351250-41351269 | Msa0641290:intron | 45.0% | |
| ! | TGGTCTTGGTCATTAGCGTA+AGG | + | chr4_3:41351264-41351283 | Msa0641290:intron | 45.0% |
| TGGAGGAATTCAAGCAGAGA+AGG | + | chr4_3:41351641-41351660 | Msa0641290:CDS | 45.0% | |
| !! | CCCCCTAACTCAACTAGTTT+TGG | + | chr4_3:41351680-41351699 | Msa0641290:CDS | 45.0% |
| ! | CTTTTCACGAAATGCACCTC+CGG | + | chr4_3:41351712-41351731 | Msa0641290:CDS | 45.0% |
| ! | CCTTTGTGAATTGATTCCGG+AGG | - | chr4_3:41351731-41351750 | None:intergenic | 45.0% |
| CCTCCGGAATCAATTCACAA+AGG | + | chr4_3:41351728-41351747 | Msa0641290:CDS | 45.0% | |
| ATTCACAAAGGAGCTGGTGT+TGG | + | chr4_3:41351740-41351759 | Msa0641290:CDS | 45.0% | |
| TTGAGGCCTAAATGAGCTGT+TGG | - | chr4_3:41351972-41351991 | None:intergenic | 45.0% | |
| ACAGCTCATTTAGGCCTCAA+TGG | + | chr4_3:41351972-41351991 | Msa0641290:CDS | 45.0% | |
| GCCTCAATGGAGTGATTCAA+AGG | + | chr4_3:41351985-41352004 | Msa0641290:CDS | 45.0% | |
| AGAACTAAAGCAGCAGGGTT+AGG | - | chr4_3:41352299-41352318 | None:intergenic | 45.0% | |
| !! | ATATTAAATTATTAAATGTA+AGG | - | chr4_3:41345880-41345899 | None:intergenic | 5.0% |
| !! | TTACATTTAATAATTTAATA+TGG | + | chr4_3:41345879-41345898 | Msa0641290:intron | 5.0% |
| !! | TAATATAGAAAAATAAATAA+GGG | - | chr4_3:41348124-41348143 | None:intergenic | 5.0% |
| !! | TTAATATAGAAAAATAAATA+AGG | - | chr4_3:41348125-41348144 | None:intergenic | 5.0% |
| !!! | ATTTTAATATATAGTTATTT+AGG | + | chr4_3:41350001-41350020 | Msa0641290:intron | 5.0% |
| TTGTAGGGGACCACTTAGGT+TGG | - | chr4_3:41345678-41345697 | None:intergenic | 50.0% | |
| AAGTCGAGGAAGAGAGACTG+AGG | + | chr4_3:41346536-41346555 | Msa0641290:CDS | 50.0% | |
| TCTGCCTCACTTGCCATCTT+TGG | + | chr4_3:41347885-41347904 | Msa0641290:CDS | 50.0% | |
| CCGCCGACATTGAGCTAAAA+AGG | + | chr4_3:41348960-41348979 | Msa0641290:CDS | 50.0% | |
| TGCTTCGGACTTAAAGGGCA+TGG | + | chr4_3:41349535-41349554 | Msa0641290:CDS | 50.0% | |
| GGTCATTTGGCCACAACAGA+AGG | + | chr4_3:41350122-41350141 | Msa0641290:intron | 50.0% | |
| !! | TCTCTGAGGAGCTTTTGCTC+TGG | + | chr4_3:41350206-41350225 | Msa0641290:intron | 50.0% |
| !! | CTCTGAGGAGCTTTTGCTCT+GGG | + | chr4_3:41350207-41350226 | Msa0641290:intron | 50.0% |
| ! | GTGTCGTGTCGGTGTATGAT+AGG | - | chr4_3:41350312-41350331 | None:intergenic | 50.0% |
| TGTTGTTCTCGACACACTCG+TGG | - | chr4_3:41350877-41350896 | None:intergenic | 50.0% | |
| GCTCGTATTTGACACAGCTG+CGG | - | chr4_3:41350997-41351016 | None:intergenic | 50.0% | |
| ATGGCGCAACAAGCTGTTGA+CGG | - | chr4_3:41351541-41351560 | None:intergenic | 50.0% | |
| ! | ACAAAGGAGCTGGTGTTGGA+TGG | + | chr4_3:41351744-41351763 | Msa0641290:CDS | 50.0% |
| ! | CAAAGGAGCTGGTGTTGGAT+GGG | + | chr4_3:41351745-41351764 | Msa0641290:CDS | 50.0% |
| ! | AAAGGAGCTGGTGTTGGATG+GGG | + | chr4_3:41351746-41351765 | Msa0641290:CDS | 50.0% |
| CAGGCAGAGGAAAACCAGAA+AGG | + | chr4_3:41351771-41351790 | Msa0641290:CDS | 50.0% | |
| !!! | TGCTGGTTCATTTTCGCGCG+TGG | - | chr4_3:41346365-41346384 | None:intergenic | 55.0% |
| CGAGGAAGAGAGACTGAGGA+AGG | + | chr4_3:41346540-41346559 | Msa0641290:CDS | 55.0% | |
| TGGTGCATGAACTCAGTCCC+TGG | - | chr4_3:41346637-41346656 | None:intergenic | 55.0% | |
| !! | AGGAAAGCGCTTCATGTGGC+AGG | + | chr4_3:41349912-41349931 | Msa0641290:CDS | 55.0% |
| ! | TTTAGCAGCGACGGCATTGG+AGG | + | chr4_3:41350836-41350855 | Msa0641290:intron | 55.0% |
| ! | TTAGCAGCGACGGCATTGGA+GGG | + | chr4_3:41350837-41350856 | Msa0641290:intron | 55.0% |
| ACATGACTCGTACCGCCAAC+AGG | - | chr4_3:41351022-41351041 | None:intergenic | 55.0% | |
| ! | GCGCACTCGAACGTTGATGA+TGG | - | chr4_3:41351877-41351896 | None:intergenic | 55.0% |
| ! | CAACGTTCGAGTGCGCCTTT+TGG | + | chr4_3:41351881-41351900 | Msa0641290:CDS | 55.0% |
| ! | CTTTTGGTCGTGGACGAGGT+CGG | + | chr4_3:41351897-41351916 | Msa0641290:CDS | 55.0% |
| ! | GCTGGTGTTGGATGGGGTTC+AGG | + | chr4_3:41351752-41351771 | Msa0641290:CDS | 60.0% |
| GTTGGATGGGGTTCAGGCAG+AGG | + | chr4_3:41351758-41351777 | Msa0641290:CDS | 60.0% | |
| ! | TCGAGTGCGCCTTTTGGTCG+TGG | + | chr4_3:41351887-41351906 | Msa0641290:CDS | 60.0% |
| CGACCTCGTCCACGACCAAA+AGG | - | chr4_3:41351899-41351918 | None:intergenic | 60.0% | |
| ! | GCGCCTTTTGGTCGTGGACG+AGG | + | chr4_3:41351893-41351912 | Msa0641290:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 41345100 | 41352325 | 41345100 | ID=Msa0641290;Name=Msa0641290 |
| chr4_3 | mRNA | 41345100 | 41352325 | 41345100 | ID=Msa0641290-mRNA-1;Parent=Msa0641290;Name=Msa0641290-mRNA-1;_AED=0.18;_eAED=0.18;_QI=62|1|1|1|0.91|0.88|25|227|876 |
| chr4_3 | exon | 41345100 | 41345329 | 41345100 | ID=Msa0641290-mRNA-1:exon:9285;Parent=Msa0641290-mRNA-1 |
| chr4_3 | exon | 41345414 | 41345519 | 41345414 | ID=Msa0641290-mRNA-1:exon:9286;Parent=Msa0641290-mRNA-1 |
| chr4_3 | exon | 41346351 | 41346427 | 41346351 | ID=Msa0641290-mRNA-1:exon:9287;Parent=Msa0641290-mRNA-1 |
| chr4_3 | exon | 41346535 | 41346726 | 41346535 | ID=Msa0641290-mRNA-1:exon:9288;Parent=Msa0641290-mRNA-1 |
| chr4_3 | exon | 41346861 | 41346980 | 41346861 | ID=Msa0641290-mRNA-1:exon:9289;Parent=Msa0641290-mRNA-1 |
| chr4_3 | exon | 41347070 | 41347132 | 41347070 | ID=Msa0641290-mRNA-1:exon:9290;Parent=Msa0641290-mRNA-1 |
| chr4_3 | exon | 41347511 | 41347564 | 41347511 | ID=Msa0641290-mRNA-1:exon:9291;Parent=Msa0641290-mRNA-1 |
| chr4_3 | exon | 41347748 | 41347918 | 41347748 | ID=Msa0641290-mRNA-1:exon:9292;Parent=Msa0641290-mRNA-1 |
| chr4_3 | exon | 41348015 | 41348092 | 41348015 | ID=Msa0641290-mRNA-1:exon:9293;Parent=Msa0641290-mRNA-1 |
| chr4_3 | exon | 41348209 | 41348358 | 41348209 | ID=Msa0641290-mRNA-1:exon:9294;Parent=Msa0641290-mRNA-1 |
| chr4_3 | exon | 41348442 | 41348561 | 41348442 | ID=Msa0641290-mRNA-1:exon:9295;Parent=Msa0641290-mRNA-1 |
| chr4_3 | exon | 41348634 | 41348729 | 41348634 | ID=Msa0641290-mRNA-1:exon:9296;Parent=Msa0641290-mRNA-1 |
| chr4_3 | exon | 41348896 | 41348991 | 41348896 | ID=Msa0641290-mRNA-1:exon:9297;Parent=Msa0641290-mRNA-1 |
| chr4_3 | exon | 41349149 | 41349219 | 41349149 | ID=Msa0641290-mRNA-1:exon:9298;Parent=Msa0641290-mRNA-1 |
| chr4_3 | exon | 41349508 | 41349636 | 41349508 | ID=Msa0641290-mRNA-1:exon:9299;Parent=Msa0641290-mRNA-1 |
| chr4_3 | exon | 41349735 | 41349811 | 41349735 | ID=Msa0641290-mRNA-1:exon:9300;Parent=Msa0641290-mRNA-1 |
| chr4_3 | exon | 41349893 | 41349933 | 41349893 | ID=Msa0641290-mRNA-1:exon:9301;Parent=Msa0641290-mRNA-1 |
| chr4_3 | exon | 41350433 | 41350507 | 41350433 | ID=Msa0641290-mRNA-1:exon:9302;Parent=Msa0641290-mRNA-1 |
| chr4_3 | exon | 41350597 | 41350712 | 41350597 | ID=Msa0641290-mRNA-1:exon:9303;Parent=Msa0641290-mRNA-1 |
| chr4_3 | exon | 41350841 | 41350915 | 41350841 | ID=Msa0641290-mRNA-1:exon:9304;Parent=Msa0641290-mRNA-1 |
| chr4_3 | exon | 41351000 | 41351078 | 41351000 | ID=Msa0641290-mRNA-1:exon:9305;Parent=Msa0641290-mRNA-1 |
| chr4_3 | exon | 41351327 | 41351400 | 41351327 | ID=Msa0641290-mRNA-1:exon:9306;Parent=Msa0641290-mRNA-1 |
| chr4_3 | exon | 41351622 | 41352060 | 41351622 | ID=Msa0641290-mRNA-1:exon:9307;Parent=Msa0641290-mRNA-1 |
| chr4_3 | exon | 41352106 | 41352198 | 41352106 | ID=Msa0641290-mRNA-1:exon:9308;Parent=Msa0641290-mRNA-1 |
| chr4_3 | exon | 41352228 | 41352325 | 41352228 | ID=Msa0641290-mRNA-1:exon:9309;Parent=Msa0641290-mRNA-1 |
| chr4_3 | five_prime_UTR | 41345100 | 41345161 | 41345100 | ID=Msa0641290-mRNA-1:five_prime_utr;Parent=Msa0641290-mRNA-1 |
| chr4_3 | CDS | 41345162 | 41345329 | 41345162 | ID=Msa0641290-mRNA-1:cds;Parent=Msa0641290-mRNA-1 |
| chr4_3 | CDS | 41345414 | 41345519 | 41345414 | ID=Msa0641290-mRNA-1:cds;Parent=Msa0641290-mRNA-1 |
| chr4_3 | CDS | 41346351 | 41346427 | 41346351 | ID=Msa0641290-mRNA-1:cds;Parent=Msa0641290-mRNA-1 |
| chr4_3 | CDS | 41346535 | 41346726 | 41346535 | ID=Msa0641290-mRNA-1:cds;Parent=Msa0641290-mRNA-1 |
| chr4_3 | CDS | 41346861 | 41346980 | 41346861 | ID=Msa0641290-mRNA-1:cds;Parent=Msa0641290-mRNA-1 |
| chr4_3 | CDS | 41347070 | 41347132 | 41347070 | ID=Msa0641290-mRNA-1:cds;Parent=Msa0641290-mRNA-1 |
| chr4_3 | CDS | 41347511 | 41347564 | 41347511 | ID=Msa0641290-mRNA-1:cds;Parent=Msa0641290-mRNA-1 |
| chr4_3 | CDS | 41347748 | 41347918 | 41347748 | ID=Msa0641290-mRNA-1:cds;Parent=Msa0641290-mRNA-1 |
| chr4_3 | CDS | 41348015 | 41348092 | 41348015 | ID=Msa0641290-mRNA-1:cds;Parent=Msa0641290-mRNA-1 |
| chr4_3 | CDS | 41348209 | 41348358 | 41348209 | ID=Msa0641290-mRNA-1:cds;Parent=Msa0641290-mRNA-1 |
| chr4_3 | CDS | 41348442 | 41348561 | 41348442 | ID=Msa0641290-mRNA-1:cds;Parent=Msa0641290-mRNA-1 |
| chr4_3 | CDS | 41348634 | 41348729 | 41348634 | ID=Msa0641290-mRNA-1:cds;Parent=Msa0641290-mRNA-1 |
| chr4_3 | CDS | 41348896 | 41348991 | 41348896 | ID=Msa0641290-mRNA-1:cds;Parent=Msa0641290-mRNA-1 |
| chr4_3 | CDS | 41349149 | 41349219 | 41349149 | ID=Msa0641290-mRNA-1:cds;Parent=Msa0641290-mRNA-1 |
| chr4_3 | CDS | 41349508 | 41349636 | 41349508 | ID=Msa0641290-mRNA-1:cds;Parent=Msa0641290-mRNA-1 |
| chr4_3 | CDS | 41349735 | 41349811 | 41349735 | ID=Msa0641290-mRNA-1:cds;Parent=Msa0641290-mRNA-1 |
| chr4_3 | CDS | 41349893 | 41349933 | 41349893 | ID=Msa0641290-mRNA-1:cds;Parent=Msa0641290-mRNA-1 |
| chr4_3 | CDS | 41350433 | 41350507 | 41350433 | ID=Msa0641290-mRNA-1:cds;Parent=Msa0641290-mRNA-1 |
| chr4_3 | CDS | 41350597 | 41350712 | 41350597 | ID=Msa0641290-mRNA-1:cds;Parent=Msa0641290-mRNA-1 |
| chr4_3 | CDS | 41350841 | 41350915 | 41350841 | ID=Msa0641290-mRNA-1:cds;Parent=Msa0641290-mRNA-1 |
| chr4_3 | CDS | 41351000 | 41351078 | 41351000 | ID=Msa0641290-mRNA-1:cds;Parent=Msa0641290-mRNA-1 |
| chr4_3 | CDS | 41351327 | 41351400 | 41351327 | ID=Msa0641290-mRNA-1:cds;Parent=Msa0641290-mRNA-1 |
| chr4_3 | CDS | 41351622 | 41352024 | 41351622 | ID=Msa0641290-mRNA-1:cds;Parent=Msa0641290-mRNA-1 |
| chr4_3 | three_prime_UTR | 41352025 | 41352060 | 41352025 | ID=Msa0641290-mRNA-1:three_prime_utr;Parent=Msa0641290-mRNA-1 |
| chr4_3 | three_prime_UTR | 41352106 | 41352198 | 41352106 | ID=Msa0641290-mRNA-1:three_prime_utr;Parent=Msa0641290-mRNA-1 |
| chr4_3 | three_prime_UTR | 41352228 | 41352325 | 41352228 | ID=Msa0641290-mRNA-1:three_prime_utr;Parent=Msa0641290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
