Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0659540 | AET04830.2 | 49.239 | 197 | 59 | 8 | 3 | 178 | 98 | 274 | 9.26e-40 | 147 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0610430 | Msa0659540 | 0.802589 | 5.220872e-49 | -8.615850e-47 |
| Msa0657970 | Msa0659540 | 0.813795 | 2.136510e-51 | -8.615850e-47 |
| Msa0659540 | Msa0673460 | 0.812482 | 4.147053e-51 | -8.615850e-47 |
| Msa0659540 | Msa0692950 | 0.800260 | 1.566358e-48 | -8.615850e-47 |
| Msa0659540 | Msa0693380 | 0.804010 | 2.652275e-49 | -8.615850e-47 |
| Msa0659540 | Msa0745790 | 0.804164 | 2.463076e-49 | -8.615850e-47 |
| Msa0659540 | Msa0969520 | 0.818467 | 1.930358e-52 | -8.615850e-47 |
| Msa0659540 | Msa1014540 | 0.817038 | 4.056343e-52 | -8.615850e-47 |
| Msa0659540 | Msa1074530 | 0.805468 | 1.315855e-49 | -8.615850e-47 |
| Msa0659540 | Msa1082500 | 0.811573 | 6.544052e-51 | -8.615850e-47 |
| Msa0659540 | Msa1129730 | 0.800127 | 1.666971e-48 | -8.615850e-47 |
| Msa0659540 | Msa1162550 | -0.801031 | 1.090847e-48 | -8.615850e-47 |
| Msa0659540 | Msa1276440 | 0.800565 | 1.357702e-48 | -8.615850e-47 |
| Msa0659540 | Msa1305340 | 0.804826 | 1.793184e-49 | -8.615850e-47 |
| Msa0659540 | Msa1340650 | 0.803719 | 3.048869e-49 | -8.615850e-47 |
| Msa0659540 | Msa1343760 | 0.800775 | 1.230118e-48 | -8.615850e-47 |
| Msa0659540 | Msa1372760 | 0.801883 | 7.296377e-49 | -8.615850e-47 |
| Msa0659540 | Msa1427230 | 0.801653 | 8.136340e-49 | -8.615850e-47 |
| Msa0659540 | Msa1435270 | 0.806639 | 7.461797e-50 | -8.615850e-47 |
| Msa0379640 | Msa0659540 | 0.816728 | 4.762010e-52 | -8.615850e-47 |
| Msa0467060 | Msa0659540 | 0.801581 | 8.416395e-49 | -8.615850e-47 |
| Msa0481530 | Msa0659540 | 0.802267 | 6.084057e-49 | -8.615850e-47 |
| Msa0319170 | Msa0659540 | 0.805381 | 1.372079e-49 | -8.615850e-47 |
| Msa0363790 | Msa0659540 | 0.807877 | 4.077144e-50 | -8.615850e-47 |
| Msa0484780 | Msa0659540 | 0.820097 | 8.213425e-53 | -8.615850e-47 |
| Msa0495320 | Msa0659540 | 0.801897 | 7.248005e-49 | -8.615850e-47 |
| Msa0512750 | Msa0659540 | 0.819802 | 9.591413e-53 | -8.615850e-47 |
| Msa0512900 | Msa0659540 | 0.805377 | 1.374949e-49 | -8.615850e-47 |
| Msa0558690 | Msa0659540 | 0.800903 | 1.158529e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0659540 | MtrunA17_Chr8g0384811 | 78.378 | 37 | 8 | 0 | 93 | 129 | 1 | 37 | 5.84e-14 | 63.9 |
| Msa0659540 | MtrunA17_Chr4g0003561 | 71.429 | 49 | 11 | 1 | 84 | 129 | 197 | 245 | 8.83e-14 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 48 sgRNAs with CRISPR-Local
Find 304 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCATAGTCAAATCATATT+TGG | 0.193425 | 4_3:-69935286 | Msa0659540:CDS |
| TATACATGCAAAAGCTGTTT+TGG | 0.239737 | 4_3:-69933701 | Msa0659540:CDS |
| ACGAAGGTAGAGAGACAAAA+AGG | 0.292768 | 4_3:+69934191 | None:intergenic |
| AAAGTACTGAACATCGTCTA+AGG | 0.315346 | 4_3:+69934646 | None:intergenic |
| GGCTCCTGGTTCCAAGGGTT+TGG | 0.316944 | 4_3:+69934242 | None:intergenic |
| GTGGCTGGAGATGGTCTTAT+TGG | 0.335382 | 4_3:-69933809 | Msa0659540:intron |
| TTTGTCTCTCTACCTTCGTT+TGG | 0.355011 | 4_3:-69934187 | Msa0659540:CDS |
| CTTGTTACTGATCTATGAAT+TGG | 0.359173 | 4_3:-69935380 | None:intergenic |
| CCATGGAGACCCTTTGCAAT+TGG | 0.360439 | 4_3:-69935338 | Msa0659540:CDS |
| CATTGCATCTAGAAGCTTAG+AGG | 0.363803 | 4_3:+69934221 | None:intergenic |
| CTGGCTATATGCAACCTTAT+CGG | 0.368591 | 4_3:+69934161 | None:intergenic |
| AGAGCAGCTCTTGCATATAA+AGG | 0.385108 | 4_3:+69934288 | None:intergenic |
| TGGCTATATGCAACCTTATC+GGG | 0.391989 | 4_3:+69934162 | None:intergenic |
| TTCGTTGAGAAGGCTAGAAT+TGG | 0.409429 | 4_3:+69933738 | None:intergenic |
| CCTTCGTTTGGAGCCCGATA+AGG | 0.442527 | 4_3:-69934175 | Msa0659540:intron |
| CTTTGCAATTGGTGGCTACA+AGG | 0.444589 | 4_3:-69935327 | Msa0659540:CDS |
| TTGGAACTGATGGAAATTGA+AGG | 0.449535 | 4_3:-69933790 | Msa0659540:CDS |
| ATATCAGAGTATATTGCTAC+TGG | 0.451236 | 4_3:-69934734 | Msa0659540:CDS |
| TTGCAAGGTGGCCAAACCCT+TGG | 0.463438 | 4_3:-69934253 | Msa0659540:CDS |
| GTTACTGATCTATGAATTGG+TGG | 0.469191 | 4_3:-69935377 | None:intergenic |
| TGGAGACCCTTTGCAATTGG+TGG | 0.483786 | 4_3:-69935335 | Msa0659540:CDS |
| CTTAGAGGCTCCTGGTTCCA+AGG | 0.496632 | 4_3:+69934236 | None:intergenic |
| GATGGTCTTATTGGAACTGA+TGG | 0.500388 | 4_3:-69933800 | Msa0659540:CDS |
| ATATACTCTGATATATCCAT+TGG | 0.503147 | 4_3:+69934743 | None:intergenic |
| GGGTTGCAGACCCCTTGCCA+TGG | 0.508665 | 4_3:-69935355 | Msa0659540:CDS |
| AGAAATCTTCTTCGTTGAGA+AGG | 0.512326 | 4_3:+69933728 | None:intergenic |
| TTACTGATCTATGAATTGGT+GGG | 0.517681 | 4_3:-69935376 | None:intergenic |
| GTGCAGCTCTACTCTACGAT+TGG | 0.529661 | 4_3:-69934769 | Msa0659540:intron |
| TGGAACTGATGGAAATTGAA+GGG | 0.532226 | 4_3:-69933789 | Msa0659540:CDS |
| TCTAGAAGCTTAGAGGCTCC+TGG | 0.538074 | 4_3:+69934228 | None:intergenic |
| TACTGATCTATGAATTGGTG+GGG | 0.541789 | 4_3:-69935375 | None:intergenic |
| TAATCAAGAAAATAAAATAG+TGG | 0.550763 | 4_3:-69933639 | None:intergenic |
| CTTGTAGCCACCAATTGCAA+AGG | 0.550954 | 4_3:+69935328 | None:intergenic |
| TTAGAGGCTCCTGGTTCCAA+GGG | 0.553476 | 4_3:+69934237 | None:intergenic |
| TGCAAAGGGTCTCCATGGCA+AGG | 0.553771 | 4_3:+69935343 | None:intergenic |
| GTGGCCAAACCCTTGGAACC+AGG | 0.557092 | 4_3:-69934246 | Msa0659540:CDS |
| GCAAAGGGTCTCCATGGCAA+GGG | 0.563628 | 4_3:+69935344 | None:intergenic |
| ACTCTACGATTGGAAACCAA+TGG | 0.567217 | 4_3:-69934759 | Msa0659540:CDS |
| TTTGCAATTGGTGGCTACAA+GGG | 0.571923 | 4_3:-69935326 | Msa0659540:CDS |
| CCAATTGCAAAGGGTCTCCA+TGG | 0.574080 | 4_3:+69935338 | None:intergenic |
| TGGCTACAAGGGCATCAACC+AGG | 0.575920 | 4_3:-69935315 | Msa0659540:CDS |
| TTGTAGCCACCAATTGCAAA+GGG | 0.580236 | 4_3:+69935329 | None:intergenic |
| AAGTACTGAACATCGTCTAA+GGG | 0.580680 | 4_3:+69934647 | None:intergenic |
| TATCAGAGTATATTGCTACT+GGG | 0.607095 | 4_3:-69934733 | Msa0659540:CDS |
| TCTGTGTCAAGCTTGTTGCA+AGG | 0.634897 | 4_3:-69934268 | Msa0659540:CDS |
| CAAAGGGTCTCCATGGCAAG+GGG | 0.637668 | 4_3:+69935345 | None:intergenic |
| GTGTCAAGCTTGTTGCAAGG+TGG | 0.650855 | 4_3:-69934265 | Msa0659540:CDS |
| CCTTATCGGGCTCCAAACGA+AGG | 0.660174 | 4_3:+69934175 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTCCTAAATTATTACT+CGG | - | chr4_3:69933931-69933950 | Msa0659540:intron | 15.0% |
| !!! | CTTATTTTCATTGAAAATAA+TGG | - | chr4_3:69934504-69934523 | Msa0659540:intron | 15.0% |
| !! | AAATCAAAGAAAAGAAAAAT+TGG | + | chr4_3:69934680-69934699 | None:intergenic | 15.0% |
| !! | ATATTTCCTAAATTATTACT+CGG | - | chr4_3:69933931-69933950 | Msa0659540:intron | 15.0% |
| !!! | CTTATTTTCATTGAAAATAA+TGG | - | chr4_3:69934504-69934523 | Msa0659540:intron | 15.0% |
| !! | AAATCAAAGAAAAGAAAAAT+TGG | + | chr4_3:69934680-69934699 | None:intergenic | 15.0% |
| !! | TATTTCCTAAATTATTACTC+GGG | - | chr4_3:69933932-69933951 | Msa0659540:intron | 20.0% |
| !!! | GTCTTTTTAAATTCTTGAAA+TGG | - | chr4_3:69934217-69934236 | Msa0659540:CDS | 20.0% |
| !! | ATAAGAACAATCAATAGAAA+TGG | + | chr4_3:69934489-69934508 | None:intergenic | 20.0% |
| !! | TCATTGAAAATAATGGTTAT+TGG | - | chr4_3:69934511-69934530 | Msa0659540:intron | 20.0% |
| !! | TATTTCCTAAATTATTACTC+GGG | - | chr4_3:69933932-69933951 | Msa0659540:intron | 20.0% |
| !!! | GTCTTTTTAAATTCTTGAAA+TGG | - | chr4_3:69934217-69934236 | Msa0659540:CDS | 20.0% |
| !! | ATAAGAACAATCAATAGAAA+TGG | + | chr4_3:69934489-69934508 | None:intergenic | 20.0% |
| !! | TCATTGAAAATAATGGTTAT+TGG | - | chr4_3:69934511-69934530 | Msa0659540:intron | 20.0% |
| ! | TTGCATAGTCAAATCATATT+TGG | - | chr4_3:69933722-69933741 | Msa0659540:CDS | 25.0% |
| !!! | AAGTTTTGAAGGCTAAAATT+TGG | - | chr4_3:69933758-69933777 | Msa0659540:CDS | 25.0% |
| ! | CAATCATTCAAACACAAATA+GGG | + | chr4_3:69934032-69934051 | None:intergenic | 25.0% |
| ! | ATATACTCTGATATATCCAT+TGG | + | chr4_3:69934268-69934287 | None:intergenic | 25.0% |
| !!! | CTCTCTTGAATTTTAATTTC+AGG | - | chr4_3:69934338-69934357 | Msa0659540:intron | 25.0% |
| ! | TGAAAATAATGGTTATTGGT+TGG | - | chr4_3:69934515-69934534 | Msa0659540:intron | 25.0% |
| ! | AGACTAATTCAACATATGAT+TGG | - | chr4_3:69934573-69934592 | Msa0659540:intron | 25.0% |
| ! | TTGCATAGTCAAATCATATT+TGG | - | chr4_3:69933722-69933741 | Msa0659540:CDS | 25.0% |
| !!! | AAGTTTTGAAGGCTAAAATT+TGG | - | chr4_3:69933758-69933777 | Msa0659540:CDS | 25.0% |
| ! | CAATCATTCAAACACAAATA+GGG | + | chr4_3:69934032-69934051 | None:intergenic | 25.0% |
| ! | ATATACTCTGATATATCCAT+TGG | + | chr4_3:69934268-69934287 | None:intergenic | 25.0% |
| !!! | CTCTCTTGAATTTTAATTTC+AGG | - | chr4_3:69934338-69934357 | Msa0659540:intron | 25.0% |
| ! | TGAAAATAATGGTTATTGGT+TGG | - | chr4_3:69934515-69934534 | Msa0659540:intron | 25.0% |
| ! | AGACTAATTCAACATATGAT+TGG | - | chr4_3:69934573-69934592 | Msa0659540:intron | 25.0% |
| CCAATCATTCAAACACAAAT+AGG | + | chr4_3:69934033-69934052 | None:intergenic | 30.0% | |
| CCTATTTGTGTTTGAATGAT+TGG | - | chr4_3:69934030-69934049 | Msa0659540:intron | 30.0% | |
| !!! | GTTTTAGTGATAATGGAACT+TGG | - | chr4_3:69934074-69934093 | Msa0659540:intron | 30.0% |
| CAACTCAAGAAATCTTACTT+TGG | - | chr4_3:69934102-69934121 | Msa0659540:intron | 30.0% | |
| TTGGCTAATGAAATTTGCAA+TGG | - | chr4_3:69934121-69934140 | Msa0659540:intron | 30.0% | |
| ATATCAGAGTATATTGCTAC+TGG | - | chr4_3:69934274-69934293 | Msa0659540:CDS | 30.0% | |
| TATCAGAGTATATTGCTACT+GGG | - | chr4_3:69934275-69934294 | Msa0659540:CDS | 30.0% | |
| ! | GTTATTGGTTGGTTCAATTA+CGG | - | chr4_3:69934526-69934545 | Msa0659540:intron | 30.0% |
| !! | CTTTTTGTTTCAATCTCTGA+TGG | + | chr4_3:69934623-69934642 | None:intergenic | 30.0% |
| !!! | TTTTAAAGTGTGGATAAGTG+GGG | + | chr4_3:69935085-69935104 | None:intergenic | 30.0% |
| !!! | CTTTTAAAGTGTGGATAAGT+GGG | + | chr4_3:69935086-69935105 | None:intergenic | 30.0% |
| !!! | ACTTTTAAAGTGTGGATAAG+TGG | + | chr4_3:69935087-69935106 | None:intergenic | 30.0% |
| !!! | TTTTTGGTTAAATAGCCTAG+TGG | + | chr4_3:69935121-69935140 | None:intergenic | 30.0% |
| !!! | AAGCTCTCATTAGGTTTTTT+TGG | + | chr4_3:69935137-69935156 | None:intergenic | 30.0% |
| ! | GAAGTATTAAAGCTCTCATT+AGG | + | chr4_3:69935146-69935165 | None:intergenic | 30.0% |
| ! | TATACATGCAAAAGCTGTTT+TGG | - | chr4_3:69935307-69935326 | Msa0659540:CDS | 30.0% |
| CCAATCATTCAAACACAAAT+AGG | + | chr4_3:69934033-69934052 | None:intergenic | 30.0% | |
| CCTATTTGTGTTTGAATGAT+TGG | - | chr4_3:69934030-69934049 | Msa0659540:intron | 30.0% | |
| !!! | GTTTTAGTGATAATGGAACT+TGG | - | chr4_3:69934074-69934093 | Msa0659540:intron | 30.0% |
| CAACTCAAGAAATCTTACTT+TGG | - | chr4_3:69934102-69934121 | Msa0659540:intron | 30.0% | |
| TTGGCTAATGAAATTTGCAA+TGG | - | chr4_3:69934121-69934140 | Msa0659540:intron | 30.0% | |
| ATATCAGAGTATATTGCTAC+TGG | - | chr4_3:69934274-69934293 | Msa0659540:CDS | 30.0% | |
| TATCAGAGTATATTGCTACT+GGG | - | chr4_3:69934275-69934294 | Msa0659540:CDS | 30.0% | |
| ! | GTTATTGGTTGGTTCAATTA+CGG | - | chr4_3:69934526-69934545 | Msa0659540:intron | 30.0% |
| !! | CTTTTTGTTTCAATCTCTGA+TGG | + | chr4_3:69934623-69934642 | None:intergenic | 30.0% |
| !!! | TTTTAAAGTGTGGATAAGTG+GGG | + | chr4_3:69935085-69935104 | None:intergenic | 30.0% |
| !!! | CTTTTAAAGTGTGGATAAGT+GGG | + | chr4_3:69935086-69935105 | None:intergenic | 30.0% |
| !!! | ACTTTTAAAGTGTGGATAAG+TGG | + | chr4_3:69935087-69935106 | None:intergenic | 30.0% |
| !!! | TTTTTGGTTAAATAGCCTAG+TGG | + | chr4_3:69935121-69935140 | None:intergenic | 30.0% |
| !!! | AAGCTCTCATTAGGTTTTTT+TGG | + | chr4_3:69935137-69935156 | None:intergenic | 30.0% |
| ! | GAAGTATTAAAGCTCTCATT+AGG | + | chr4_3:69935146-69935165 | None:intergenic | 30.0% |
| ! | TATACATGCAAAAGCTGTTT+TGG | - | chr4_3:69935307-69935326 | Msa0659540:CDS | 30.0% |
| !!! | CTACTGACTTCAAGTTTTGA+AGG | - | chr4_3:69933747-69933766 | Msa0659540:CDS | 35.0% |
| GTTGTGATTAATTGTAGCAC+AGG | - | chr4_3:69933883-69933902 | Msa0659540:intron | 35.0% | |
| CTACACCCGAGTAATAATTT+AGG | + | chr4_3:69933940-69933959 | None:intergenic | 35.0% | |
| CTAAATTATTACTCGGGTGT+AGG | - | chr4_3:69933938-69933957 | Msa0659540:intron | 35.0% | |
| GTTTGAATGATTGGCATTTG+AGG | - | chr4_3:69934039-69934058 | Msa0659540:intron | 35.0% | |
| !! | GCTTAGCGTTTTAGTGATAA+TGG | - | chr4_3:69934067-69934086 | Msa0659540:intron | 35.0% |
| TAATGAAATTTGCAATGGCC+AGG | - | chr4_3:69934126-69934145 | Msa0659540:intron | 35.0% | |
| AATGAAATTTGCAATGGCCA+GGG | - | chr4_3:69934127-69934146 | Msa0659540:intron | 35.0% | |
| GTTAAGTTAGGGTATAACCT+GGG | - | chr4_3:69934149-69934168 | Msa0659540:intron | 35.0% | |
| !! | AAGTACTGAACATCGTCTAA+GGG | + | chr4_3:69934364-69934383 | None:intergenic | 35.0% |
| !! | AAAGTACTGAACATCGTCTA+AGG | + | chr4_3:69934365-69934384 | None:intergenic | 35.0% |
| CTTGGCTGTTAAATGAAACA+AGG | - | chr4_3:69934452-69934471 | Msa0659540:intron | 35.0% | |
| !!! | GATCACACACTTTTAAAGTG+TGG | + | chr4_3:69935095-69935114 | None:intergenic | 35.0% |
| TTGGAACTGATGGAAATTGA+AGG | - | chr4_3:69935218-69935237 | Msa0659540:intron | 35.0% | |
| TGGAACTGATGGAAATTGAA+GGG | - | chr4_3:69935219-69935238 | Msa0659540:intron | 35.0% | |
| AGAAATCTTCTTCGTTGAGA+AGG | + | chr4_3:69935283-69935302 | None:intergenic | 35.0% | |
| !!! | CTACTGACTTCAAGTTTTGA+AGG | - | chr4_3:69933747-69933766 | Msa0659540:CDS | 35.0% |
| GTTGTGATTAATTGTAGCAC+AGG | - | chr4_3:69933883-69933902 | Msa0659540:intron | 35.0% | |
| CTACACCCGAGTAATAATTT+AGG | + | chr4_3:69933940-69933959 | None:intergenic | 35.0% | |
| CTAAATTATTACTCGGGTGT+AGG | - | chr4_3:69933938-69933957 | Msa0659540:intron | 35.0% | |
| GTTTGAATGATTGGCATTTG+AGG | - | chr4_3:69934039-69934058 | Msa0659540:intron | 35.0% | |
| !! | GCTTAGCGTTTTAGTGATAA+TGG | - | chr4_3:69934067-69934086 | Msa0659540:intron | 35.0% |
| TAATGAAATTTGCAATGGCC+AGG | - | chr4_3:69934126-69934145 | Msa0659540:intron | 35.0% | |
| AATGAAATTTGCAATGGCCA+GGG | - | chr4_3:69934127-69934146 | Msa0659540:intron | 35.0% | |
| GTTAAGTTAGGGTATAACCT+GGG | - | chr4_3:69934149-69934168 | Msa0659540:intron | 35.0% | |
| !! | AAGTACTGAACATCGTCTAA+GGG | + | chr4_3:69934364-69934383 | None:intergenic | 35.0% |
| !! | AAAGTACTGAACATCGTCTA+AGG | + | chr4_3:69934365-69934384 | None:intergenic | 35.0% |
| CTTGGCTGTTAAATGAAACA+AGG | - | chr4_3:69934452-69934471 | Msa0659540:intron | 35.0% | |
| !!! | GATCACACACTTTTAAAGTG+TGG | + | chr4_3:69935095-69935114 | None:intergenic | 35.0% |
| TTGGAACTGATGGAAATTGA+AGG | - | chr4_3:69935218-69935237 | Msa0659540:intron | 35.0% | |
| TGGAACTGATGGAAATTGAA+GGG | - | chr4_3:69935219-69935238 | Msa0659540:intron | 35.0% | |
| AGAAATCTTCTTCGTTGAGA+AGG | + | chr4_3:69935283-69935302 | None:intergenic | 35.0% | |
| TTGTAGCCACCAATTGCAAA+GGG | + | chr4_3:69933682-69933701 | None:intergenic | 40.0% | |
| ! | TTTGCAATTGGTGGCTACAA+GGG | - | chr4_3:69933682-69933701 | Msa0659540:CDS | 40.0% |
| !! | TTGACTATGCAAAAAGCACC+TGG | + | chr4_3:69933714-69933733 | None:intergenic | 40.0% |
| ACATAGCACCAGAATCTCAT+TGG | - | chr4_3:69933843-69933862 | Msa0659540:intron | 40.0% | |
| CATAGCACCAGAATCTCATT+GGG | - | chr4_3:69933844-69933863 | Msa0659540:intron | 40.0% | |
| TAGCTATCCCAATGAGATTC+TGG | + | chr4_3:69933854-69933873 | None:intergenic | 40.0% | |
| GTGTCCATGCTTCATTTACT+AGG | - | chr4_3:69933983-69934002 | Msa0659540:intron | 40.0% | |
| CAAGCCTAGTAAATGAAGCA+TGG | + | chr4_3:69933990-69934009 | None:intergenic | 40.0% | |
| GTTATACCCTAACTTAACCC+TGG | + | chr4_3:69934147-69934166 | None:intergenic | 40.0% | |
| GGTTAAGTTAGGGTATAACC+TGG | - | chr4_3:69934148-69934167 | Msa0659540:intron | 40.0% | |
| ACTCTACGATTGGAAACCAA+TGG | - | chr4_3:69934249-69934268 | Msa0659540:CDS | 40.0% | |
| ! | ATTGGTTGGTTCAATTACGG+CGG | - | chr4_3:69934529-69934548 | Msa0659540:intron | 40.0% |
| TTCAAGTCGACTGTAGCAAA+AGG | - | chr4_3:69934649-69934668 | Msa0659540:intron | 40.0% | |
| AGAGCAGCTCTTGCATATAA+AGG | + | chr4_3:69934723-69934742 | None:intergenic | 40.0% | |
| CATTGCATCTAGAAGCTTAG+AGG | + | chr4_3:69934790-69934809 | None:intergenic | 40.0% | |
| CGAAGGTAGAGAGACAAAAA+GGG | + | chr4_3:69934819-69934838 | None:intergenic | 40.0% | |
| ACGAAGGTAGAGAGACAAAA+AGG | + | chr4_3:69934820-69934839 | None:intergenic | 40.0% | |
| TTTGTCTCTCTACCTTCGTT+TGG | - | chr4_3:69934821-69934840 | Msa0659540:intron | 40.0% | |
| TGGCTATATGCAACCTTATC+GGG | + | chr4_3:69934849-69934868 | None:intergenic | 40.0% | |
| CTGGCTATATGCAACCTTAT+CGG | + | chr4_3:69934850-69934869 | None:intergenic | 40.0% | |
| ! | TTTGATAGTTAGCCCGCATT+TGG | - | chr4_3:69934950-69934969 | Msa0659540:intron | 40.0% |
| TAAAGCTCTCATTAGGTGTG+GGG | + | chr4_3:69934989-69935008 | None:intergenic | 40.0% | |
| CTAAAGCTCTCATTAGGTGT+GGG | + | chr4_3:69934990-69935009 | None:intergenic | 40.0% | |
| ACTAAAGCTCTCATTAGGTG+TGG | + | chr4_3:69934991-69935010 | None:intergenic | 40.0% | |
| TACCAACTGAGCTACACTTA+CGG | + | chr4_3:69935015-69935034 | None:intergenic | 40.0% | |
| !! | GATGGTCTTATTGGAACTGA+TGG | - | chr4_3:69935208-69935227 | Msa0659540:intron | 40.0% |
| TTCGTTGAGAAGGCTAGAAT+TGG | + | chr4_3:69935273-69935292 | None:intergenic | 40.0% | |
| TTGTAGCCACCAATTGCAAA+GGG | + | chr4_3:69933682-69933701 | None:intergenic | 40.0% | |
| ! | TTTGCAATTGGTGGCTACAA+GGG | - | chr4_3:69933682-69933701 | Msa0659540:CDS | 40.0% |
| !! | TTGACTATGCAAAAAGCACC+TGG | + | chr4_3:69933714-69933733 | None:intergenic | 40.0% |
| ACATAGCACCAGAATCTCAT+TGG | - | chr4_3:69933843-69933862 | Msa0659540:intron | 40.0% | |
| CATAGCACCAGAATCTCATT+GGG | - | chr4_3:69933844-69933863 | Msa0659540:intron | 40.0% | |
| TAGCTATCCCAATGAGATTC+TGG | + | chr4_3:69933854-69933873 | None:intergenic | 40.0% | |
| GTGTCCATGCTTCATTTACT+AGG | - | chr4_3:69933983-69934002 | Msa0659540:intron | 40.0% | |
| CAAGCCTAGTAAATGAAGCA+TGG | + | chr4_3:69933990-69934009 | None:intergenic | 40.0% | |
| GTTATACCCTAACTTAACCC+TGG | + | chr4_3:69934147-69934166 | None:intergenic | 40.0% | |
| GGTTAAGTTAGGGTATAACC+TGG | - | chr4_3:69934148-69934167 | Msa0659540:intron | 40.0% | |
| ACTCTACGATTGGAAACCAA+TGG | - | chr4_3:69934249-69934268 | Msa0659540:CDS | 40.0% | |
| ! | ATTGGTTGGTTCAATTACGG+CGG | - | chr4_3:69934529-69934548 | Msa0659540:intron | 40.0% |
| TTCAAGTCGACTGTAGCAAA+AGG | - | chr4_3:69934649-69934668 | Msa0659540:intron | 40.0% | |
| AGAGCAGCTCTTGCATATAA+AGG | + | chr4_3:69934723-69934742 | None:intergenic | 40.0% | |
| CATTGCATCTAGAAGCTTAG+AGG | + | chr4_3:69934790-69934809 | None:intergenic | 40.0% | |
| CGAAGGTAGAGAGACAAAAA+GGG | + | chr4_3:69934819-69934838 | None:intergenic | 40.0% | |
| ACGAAGGTAGAGAGACAAAA+AGG | + | chr4_3:69934820-69934839 | None:intergenic | 40.0% | |
| TTTGTCTCTCTACCTTCGTT+TGG | - | chr4_3:69934821-69934840 | Msa0659540:intron | 40.0% | |
| TGGCTATATGCAACCTTATC+GGG | + | chr4_3:69934849-69934868 | None:intergenic | 40.0% | |
| CTGGCTATATGCAACCTTAT+CGG | + | chr4_3:69934850-69934869 | None:intergenic | 40.0% | |
| ! | TTTGATAGTTAGCCCGCATT+TGG | - | chr4_3:69934950-69934969 | Msa0659540:intron | 40.0% |
| TAAAGCTCTCATTAGGTGTG+GGG | + | chr4_3:69934989-69935008 | None:intergenic | 40.0% | |
| CTAAAGCTCTCATTAGGTGT+GGG | + | chr4_3:69934990-69935009 | None:intergenic | 40.0% | |
| ACTAAAGCTCTCATTAGGTG+TGG | + | chr4_3:69934991-69935010 | None:intergenic | 40.0% | |
| TACCAACTGAGCTACACTTA+CGG | + | chr4_3:69935015-69935034 | None:intergenic | 40.0% | |
| !! | GATGGTCTTATTGGAACTGA+TGG | - | chr4_3:69935208-69935227 | Msa0659540:intron | 40.0% |
| TTCGTTGAGAAGGCTAGAAT+TGG | + | chr4_3:69935273-69935292 | None:intergenic | 40.0% | |
| CTTGTAGCCACCAATTGCAA+AGG | + | chr4_3:69933683-69933702 | None:intergenic | 45.0% | |
| ! | CTTTGCAATTGGTGGCTACA+AGG | - | chr4_3:69933681-69933700 | Msa0659540:CDS | 45.0% |
| CTAGGCTTGTCGAAATCACT+TGG | - | chr4_3:69934001-69934020 | Msa0659540:intron | 45.0% | |
| CAATGGCCAGGGTTAAGTTA+GGG | - | chr4_3:69934138-69934157 | Msa0659540:intron | 45.0% | |
| TTAGGGTATAACCTGGGATG+AGG | - | chr4_3:69934155-69934174 | Msa0659540:intron | 45.0% | |
| TAGGGTATAACCTGGGATGA+GGG | - | chr4_3:69934156-69934175 | Msa0659540:intron | 45.0% | |
| TCACAGAGCTGCAATCATGA+AGG | + | chr4_3:69934418-69934437 | None:intergenic | 45.0% | |
| !! | TTGCTACAGTCGACTTGAAC+AGG | + | chr4_3:69934648-69934667 | None:intergenic | 45.0% |
| GTCGACTGTAGCAAAAGGAA+AGG | - | chr4_3:69934654-69934673 | Msa0659540:CDS | 45.0% | |
| !! | TCTGTGTCAAGCTTGTTGCA+AGG | - | chr4_3:69934740-69934759 | Msa0659540:CDS | 45.0% |
| TATAGCCAGTGCCAATACCA+TGG | - | chr4_3:69934861-69934880 | Msa0659540:intron | 45.0% | |
| CTTTGATGGAAGCAGGTGAA+AGG | + | chr4_3:69934887-69934906 | None:intergenic | 45.0% | |
| CTGCTTCCATCAAAGCCATA+GGG | - | chr4_3:69934892-69934911 | Msa0659540:intron | 45.0% | |
| TGCTTCCATCAAAGCCATAG+GGG | - | chr4_3:69934893-69934912 | Msa0659540:intron | 45.0% | |
| GGGCTAACTATCAAAGTCTC+GGG | + | chr4_3:69934945-69934964 | None:intergenic | 45.0% | |
| CGGGCTAACTATCAAAGTCT+CGG | + | chr4_3:69934946-69934965 | None:intergenic | 45.0% | |
| AACTCTCTCACTCCAAATGC+GGG | + | chr4_3:69934965-69934984 | None:intergenic | 45.0% | |
| GAACTCTCTCACTCCAAATG+CGG | + | chr4_3:69934966-69934985 | None:intergenic | 45.0% | |
| AAAGCTCTCATTAGGTGTGG+GGG | + | chr4_3:69934988-69935007 | None:intergenic | 45.0% | |
| ACGGGACTAAAGCTCTCATT+AGG | + | chr4_3:69934996-69935015 | None:intergenic | 45.0% | |
| ACCAACTGAGCTACACTTAC+GGG | + | chr4_3:69935014-69935033 | None:intergenic | 45.0% | |
| TACCAGGGACAATGTTTGCA+GGG | - | chr4_3:69935037-69935056 | Msa0659540:intron | 45.0% | |
| AAGTGTGTGATCTAGCCACT+AGG | - | chr4_3:69935103-69935122 | Msa0659540:intron | 45.0% | |
| CTTGTAGCCACCAATTGCAA+AGG | + | chr4_3:69933683-69933702 | None:intergenic | 45.0% | |
| ! | CTTTGCAATTGGTGGCTACA+AGG | - | chr4_3:69933681-69933700 | Msa0659540:CDS | 45.0% |
| CTAGGCTTGTCGAAATCACT+TGG | - | chr4_3:69934001-69934020 | Msa0659540:intron | 45.0% | |
| CAATGGCCAGGGTTAAGTTA+GGG | - | chr4_3:69934138-69934157 | Msa0659540:intron | 45.0% | |
| TTAGGGTATAACCTGGGATG+AGG | - | chr4_3:69934155-69934174 | Msa0659540:intron | 45.0% | |
| TAGGGTATAACCTGGGATGA+GGG | - | chr4_3:69934156-69934175 | Msa0659540:intron | 45.0% | |
| TCACAGAGCTGCAATCATGA+AGG | + | chr4_3:69934418-69934437 | None:intergenic | 45.0% | |
| !! | TTGCTACAGTCGACTTGAAC+AGG | + | chr4_3:69934648-69934667 | None:intergenic | 45.0% |
| GTCGACTGTAGCAAAAGGAA+AGG | - | chr4_3:69934654-69934673 | Msa0659540:CDS | 45.0% | |
| !! | TCTGTGTCAAGCTTGTTGCA+AGG | - | chr4_3:69934740-69934759 | Msa0659540:CDS | 45.0% |
| TATAGCCAGTGCCAATACCA+TGG | - | chr4_3:69934861-69934880 | Msa0659540:intron | 45.0% | |
| CTTTGATGGAAGCAGGTGAA+AGG | + | chr4_3:69934887-69934906 | None:intergenic | 45.0% | |
| CTGCTTCCATCAAAGCCATA+GGG | - | chr4_3:69934892-69934911 | Msa0659540:intron | 45.0% | |
| TGCTTCCATCAAAGCCATAG+GGG | - | chr4_3:69934893-69934912 | Msa0659540:intron | 45.0% | |
| GGGCTAACTATCAAAGTCTC+GGG | + | chr4_3:69934945-69934964 | None:intergenic | 45.0% | |
| CGGGCTAACTATCAAAGTCT+CGG | + | chr4_3:69934946-69934965 | None:intergenic | 45.0% | |
| AACTCTCTCACTCCAAATGC+GGG | + | chr4_3:69934965-69934984 | None:intergenic | 45.0% | |
| GAACTCTCTCACTCCAAATG+CGG | + | chr4_3:69934966-69934985 | None:intergenic | 45.0% | |
| AAAGCTCTCATTAGGTGTGG+GGG | + | chr4_3:69934988-69935007 | None:intergenic | 45.0% | |
| ACGGGACTAAAGCTCTCATT+AGG | + | chr4_3:69934996-69935015 | None:intergenic | 45.0% | |
| ACCAACTGAGCTACACTTAC+GGG | + | chr4_3:69935014-69935033 | None:intergenic | 45.0% | |
| TACCAGGGACAATGTTTGCA+GGG | - | chr4_3:69935037-69935056 | Msa0659540:intron | 45.0% | |
| AAGTGTGTGATCTAGCCACT+AGG | - | chr4_3:69935103-69935122 | Msa0659540:intron | 45.0% | |
| CCAATTGCAAAGGGTCTCCA+TGG | + | chr4_3:69933673-69933692 | None:intergenic | 50.0% | |
| CCATGGAGACCCTTTGCAAT+TGG | - | chr4_3:69933670-69933689 | Msa0659540:CDS | 50.0% | |
| TGGAGACCCTTTGCAATTGG+TGG | - | chr4_3:69933673-69933692 | Msa0659540:CDS | 50.0% | |
| GCAATGGCCAGGGTTAAGTT+AGG | - | chr4_3:69934137-69934156 | Msa0659540:intron | 50.0% | |
| CAATCATCAACCCTCATCCC+AGG | + | chr4_3:69934169-69934188 | None:intergenic | 50.0% | |
| !! | CTGGGATGAGGGTTGATGAT+TGG | - | chr4_3:69934167-69934186 | Msa0659540:intron | 50.0% |
| GTGCAGCTCTACTCTACGAT+TGG | - | chr4_3:69934239-69934258 | Msa0659540:CDS | 50.0% | |
| !! | GTGTCAAGCTTGTTGCAAGG+TGG | - | chr4_3:69934743-69934762 | Msa0659540:CDS | 50.0% |
| TTAGAGGCTCCTGGTTCCAA+GGG | + | chr4_3:69934774-69934793 | None:intergenic | 50.0% | |
| TCTAGAAGCTTAGAGGCTCC+TGG | + | chr4_3:69934783-69934802 | None:intergenic | 50.0% | |
| !! | AAAGGCCATGGTATTGGCAC+TGG | + | chr4_3:69934869-69934888 | None:intergenic | 50.0% |
| CAGGTGAAAGGCCATGGTAT+TGG | + | chr4_3:69934875-69934894 | None:intergenic | 50.0% | |
| !! | CCTATGGCTTTGATGGAAGC+AGG | + | chr4_3:69934894-69934913 | None:intergenic | 50.0% |
| CCTGCTTCCATCAAAGCCAT+AGG | - | chr4_3:69934891-69934910 | Msa0659540:intron | 50.0% | |
| TCCCGTAAGTGTAGCTCAGT+TGG | - | chr4_3:69935010-69935029 | Msa0659540:intron | 50.0% | |
| !! | TAGCTCAGTTGGTAGCTACC+AGG | - | chr4_3:69935021-69935040 | Msa0659540:intron | 50.0% |
| !! | AGCTCAGTTGGTAGCTACCA+GGG | - | chr4_3:69935022-69935041 | Msa0659540:intron | 50.0% |
| CTACCAGGGACAATGTTTGC+AGG | - | chr4_3:69935036-69935055 | Msa0659540:intron | 50.0% | |
| ACCAGGGACAATGTTTGCAG+GGG | - | chr4_3:69935038-69935057 | Msa0659540:intron | 50.0% | |
| TGTGGATAAGTGGGGAATCC+GGG | + | chr4_3:69935077-69935096 | None:intergenic | 50.0% | |
| GTGTGGATAAGTGGGGAATC+CGG | + | chr4_3:69935078-69935097 | None:intergenic | 50.0% | |
| !! | GTGGCTGGAGATGGTCTTAT+TGG | - | chr4_3:69935199-69935218 | Msa0659540:intron | 50.0% |
| CCAATTGCAAAGGGTCTCCA+TGG | + | chr4_3:69933673-69933692 | None:intergenic | 50.0% | |
| CCATGGAGACCCTTTGCAAT+TGG | - | chr4_3:69933670-69933689 | Msa0659540:CDS | 50.0% | |
| TGGAGACCCTTTGCAATTGG+TGG | - | chr4_3:69933673-69933692 | Msa0659540:CDS | 50.0% | |
| GCAATGGCCAGGGTTAAGTT+AGG | - | chr4_3:69934137-69934156 | Msa0659540:intron | 50.0% | |
| CAATCATCAACCCTCATCCC+AGG | + | chr4_3:69934169-69934188 | None:intergenic | 50.0% | |
| !! | CTGGGATGAGGGTTGATGAT+TGG | - | chr4_3:69934167-69934186 | Msa0659540:intron | 50.0% |
| GTGCAGCTCTACTCTACGAT+TGG | - | chr4_3:69934239-69934258 | Msa0659540:CDS | 50.0% | |
| !! | GTGTCAAGCTTGTTGCAAGG+TGG | - | chr4_3:69934743-69934762 | Msa0659540:CDS | 50.0% |
| TTAGAGGCTCCTGGTTCCAA+GGG | + | chr4_3:69934774-69934793 | None:intergenic | 50.0% | |
| TCTAGAAGCTTAGAGGCTCC+TGG | + | chr4_3:69934783-69934802 | None:intergenic | 50.0% | |
| !! | AAAGGCCATGGTATTGGCAC+TGG | + | chr4_3:69934869-69934888 | None:intergenic | 50.0% |
| CAGGTGAAAGGCCATGGTAT+TGG | + | chr4_3:69934875-69934894 | None:intergenic | 50.0% | |
| !! | CCTATGGCTTTGATGGAAGC+AGG | + | chr4_3:69934894-69934913 | None:intergenic | 50.0% |
| CCTGCTTCCATCAAAGCCAT+AGG | - | chr4_3:69934891-69934910 | Msa0659540:intron | 50.0% | |
| TCCCGTAAGTGTAGCTCAGT+TGG | - | chr4_3:69935010-69935029 | Msa0659540:intron | 50.0% | |
| !! | TAGCTCAGTTGGTAGCTACC+AGG | - | chr4_3:69935021-69935040 | Msa0659540:intron | 50.0% |
| !! | AGCTCAGTTGGTAGCTACCA+GGG | - | chr4_3:69935022-69935041 | Msa0659540:intron | 50.0% |
| CTACCAGGGACAATGTTTGC+AGG | - | chr4_3:69935036-69935055 | Msa0659540:intron | 50.0% | |
| ACCAGGGACAATGTTTGCAG+GGG | - | chr4_3:69935038-69935057 | Msa0659540:intron | 50.0% | |
| TGTGGATAAGTGGGGAATCC+GGG | + | chr4_3:69935077-69935096 | None:intergenic | 50.0% | |
| GTGTGGATAAGTGGGGAATC+CGG | + | chr4_3:69935078-69935097 | None:intergenic | 50.0% | |
| !! | GTGGCTGGAGATGGTCTTAT+TGG | - | chr4_3:69935199-69935218 | Msa0659540:intron | 50.0% |
| CAAAGGGTCTCCATGGCAAG+GGG | + | chr4_3:69933666-69933685 | None:intergenic | 55.0% | |
| GCAAAGGGTCTCCATGGCAA+GGG | + | chr4_3:69933667-69933686 | None:intergenic | 55.0% | |
| TGCAAAGGGTCTCCATGGCA+AGG | + | chr4_3:69933668-69933687 | None:intergenic | 55.0% | |
| !! | TGGCTACAAGGGCATCAACC+AGG | - | chr4_3:69933693-69933712 | Msa0659540:CDS | 55.0% |
| CTCGGGTGTAGGTGTCAATG+CGG | - | chr4_3:69933949-69933968 | Msa0659540:intron | 55.0% | |
| ATTGCAGCTCTGTGACCGTG+TGG | - | chr4_3:69934423-69934442 | Msa0659540:intron | 55.0% | |
| TTGCAGCTCTGTGACCGTGT+GGG | - | chr4_3:69934424-69934443 | Msa0659540:intron | 55.0% | |
| ACAGCCAAGCAATGCCCACA+CGG | + | chr4_3:69934441-69934460 | None:intergenic | 55.0% | |
| TTGCAAGGTGGCCAAACCCT+TGG | - | chr4_3:69934755-69934774 | Msa0659540:CDS | 55.0% | |
| CTTAGAGGCTCCTGGTTCCA+AGG | + | chr4_3:69934775-69934794 | None:intergenic | 55.0% | |
| CCTTATCGGGCTCCAAACGA+AGG | + | chr4_3:69934836-69934855 | None:intergenic | 55.0% | |
| ! | CCTTCGTTTGGAGCCCGATA+AGG | - | chr4_3:69934833-69934852 | Msa0659540:intron | 55.0% |
| TGGAAGCAGGTGAAAGGCCA+TGG | + | chr4_3:69934881-69934900 | None:intergenic | 55.0% | |
| !! | TGCTGCCCCTATGGCTTTGA+TGG | + | chr4_3:69934901-69934920 | None:intergenic | 55.0% |
| ! | TAGTGCTACTGCTGCCCCTA+TGG | + | chr4_3:69934910-69934929 | None:intergenic | 55.0% |
| GTGGATAAGTGGGGAATCCG+GGG | + | chr4_3:69935076-69935095 | None:intergenic | 55.0% | |
| CCACGAGGTTTCATGGTTGG+CGG | + | chr4_3:69935183-69935202 | None:intergenic | 55.0% | |
| CAGCCACGAGGTTTCATGGT+TGG | + | chr4_3:69935186-69935205 | None:intergenic | 55.0% | |
| CAACCATGAAACCTCGTGGC+TGG | - | chr4_3:69935184-69935203 | Msa0659540:intron | 55.0% | |
| TCTCCAGCCACGAGGTTTCA+TGG | + | chr4_3:69935190-69935209 | None:intergenic | 55.0% | |
| TGAAACCTCGTGGCTGGAGA+TGG | - | chr4_3:69935190-69935209 | Msa0659540:intron | 55.0% | |
| TAAGACCATCTCCAGCCACG+AGG | + | chr4_3:69935198-69935217 | None:intergenic | 55.0% | |
| CAAAGGGTCTCCATGGCAAG+GGG | + | chr4_3:69933666-69933685 | None:intergenic | 55.0% | |
| GCAAAGGGTCTCCATGGCAA+GGG | + | chr4_3:69933667-69933686 | None:intergenic | 55.0% | |
| TGCAAAGGGTCTCCATGGCA+AGG | + | chr4_3:69933668-69933687 | None:intergenic | 55.0% | |
| !! | TGGCTACAAGGGCATCAACC+AGG | - | chr4_3:69933693-69933712 | Msa0659540:CDS | 55.0% |
| CTCGGGTGTAGGTGTCAATG+CGG | - | chr4_3:69933949-69933968 | Msa0659540:intron | 55.0% | |
| ATTGCAGCTCTGTGACCGTG+TGG | - | chr4_3:69934423-69934442 | Msa0659540:intron | 55.0% | |
| TTGCAGCTCTGTGACCGTGT+GGG | - | chr4_3:69934424-69934443 | Msa0659540:intron | 55.0% | |
| ACAGCCAAGCAATGCCCACA+CGG | + | chr4_3:69934441-69934460 | None:intergenic | 55.0% | |
| TTGCAAGGTGGCCAAACCCT+TGG | - | chr4_3:69934755-69934774 | Msa0659540:CDS | 55.0% | |
| CTTAGAGGCTCCTGGTTCCA+AGG | + | chr4_3:69934775-69934794 | None:intergenic | 55.0% | |
| CCTTATCGGGCTCCAAACGA+AGG | + | chr4_3:69934836-69934855 | None:intergenic | 55.0% | |
| ! | CCTTCGTTTGGAGCCCGATA+AGG | - | chr4_3:69934833-69934852 | Msa0659540:intron | 55.0% |
| TGGAAGCAGGTGAAAGGCCA+TGG | + | chr4_3:69934881-69934900 | None:intergenic | 55.0% | |
| !! | TGCTGCCCCTATGGCTTTGA+TGG | + | chr4_3:69934901-69934920 | None:intergenic | 55.0% |
| ! | TAGTGCTACTGCTGCCCCTA+TGG | + | chr4_3:69934910-69934929 | None:intergenic | 55.0% |
| GTGGATAAGTGGGGAATCCG+GGG | + | chr4_3:69935076-69935095 | None:intergenic | 55.0% | |
| CCACGAGGTTTCATGGTTGG+CGG | + | chr4_3:69935183-69935202 | None:intergenic | 55.0% | |
| CAGCCACGAGGTTTCATGGT+TGG | + | chr4_3:69935186-69935205 | None:intergenic | 55.0% | |
| CAACCATGAAACCTCGTGGC+TGG | - | chr4_3:69935184-69935203 | Msa0659540:intron | 55.0% | |
| TCTCCAGCCACGAGGTTTCA+TGG | + | chr4_3:69935190-69935209 | None:intergenic | 55.0% | |
| TGAAACCTCGTGGCTGGAGA+TGG | - | chr4_3:69935190-69935209 | Msa0659540:intron | 55.0% | |
| TAAGACCATCTCCAGCCACG+AGG | + | chr4_3:69935198-69935217 | None:intergenic | 55.0% | |
| ! | GTGACCGTGTGGGCATTGCT+TGG | - | chr4_3:69934434-69934453 | Msa0659540:intron | 60.0% |
| GTGGCCAAACCCTTGGAACC+AGG | - | chr4_3:69934762-69934781 | Msa0659540:CDS | 60.0% | |
| GGCTCCTGGTTCCAAGGGTT+TGG | + | chr4_3:69934769-69934788 | None:intergenic | 60.0% | |
| AGGGGCAGCAGTAGCACTAG+TGG | - | chr4_3:69934911-69934930 | Msa0659540:intron | 60.0% | |
| GCCCCTGCAAACATTGTCCC+TGG | + | chr4_3:69935042-69935061 | None:intergenic | 60.0% | |
| GGGACAATGTTTGCAGGGGC+CGG | - | chr4_3:69935042-69935061 | Msa0659540:intron | 60.0% | |
| GGACAATGTTTGCAGGGGCC+GGG | - | chr4_3:69935043-69935062 | Msa0659540:intron | 60.0% | |
| GACAATGTTTGCAGGGGCCG+GGG | - | chr4_3:69935044-69935063 | Msa0659540:intron | 60.0% | |
| CCGCCAACCATGAAACCTCG+TGG | - | chr4_3:69935180-69935199 | Msa0659540:intron | 60.0% | |
| ! | GTGACCGTGTGGGCATTGCT+TGG | - | chr4_3:69934434-69934453 | Msa0659540:intron | 60.0% |
| GTGGCCAAACCCTTGGAACC+AGG | - | chr4_3:69934762-69934781 | Msa0659540:CDS | 60.0% | |
| GGCTCCTGGTTCCAAGGGTT+TGG | + | chr4_3:69934769-69934788 | None:intergenic | 60.0% | |
| AGGGGCAGCAGTAGCACTAG+TGG | - | chr4_3:69934911-69934930 | Msa0659540:intron | 60.0% | |
| GCCCCTGCAAACATTGTCCC+TGG | + | chr4_3:69935042-69935061 | None:intergenic | 60.0% | |
| GGGACAATGTTTGCAGGGGC+CGG | - | chr4_3:69935042-69935061 | Msa0659540:intron | 60.0% | |
| GGACAATGTTTGCAGGGGCC+GGG | - | chr4_3:69935043-69935062 | Msa0659540:intron | 60.0% | |
| GACAATGTTTGCAGGGGCCG+GGG | - | chr4_3:69935044-69935063 | Msa0659540:intron | 60.0% | |
| CCGCCAACCATGAAACCTCG+TGG | - | chr4_3:69935180-69935199 | Msa0659540:intron | 60.0% | |
| GGGTTGCAGACCCCTTGCCA+TGG | - | chr4_3:69933653-69933672 | Msa0659540:CDS | 65.0% | |
| GGAATCCGGGGTTCGAACCC+CGG | + | chr4_3:69935064-69935083 | None:intergenic | 65.0% | |
| GGGTTGCAGACCCCTTGCCA+TGG | - | chr4_3:69933653-69933672 | Msa0659540:CDS | 65.0% | |
| GGAATCCGGGGTTCGAACCC+CGG | + | chr4_3:69935064-69935083 | None:intergenic | 65.0% | |
| AGGGGCCGGGGTTCGAACCC+CGG | - | chr4_3:69935056-69935075 | Msa0659540:intron | 75.0% | |
| AGGGGCCGGGGTTCGAACCC+CGG | - | chr4_3:69935056-69935075 | Msa0659540:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 69933642 | 69935388 | 69933642 | ID=Msa0659540;Name=Msa0659540 |
| chr4_3 | mRNA | 69933642 | 69935388 | 69933642 | ID=Msa0659540-mRNA-1;Parent=Msa0659540;Name=Msa0659540-mRNA-1;_AED=0.47;_eAED=0.61;_QI=0|0|0|1|0.33|0.25|4|0|189 |
| chr4_3 | exon | 69935271 | 69935388 | 69935271 | ID=Msa0659540-mRNA-1:exon:20668;Parent=Msa0659540-mRNA-1 |
| chr4_3 | exon | 69934653 | 69934785 | 69934653 | ID=Msa0659540-mRNA-1:exon:20667;Parent=Msa0659540-mRNA-1 |
| chr4_3 | exon | 69934176 | 69934314 | 69934176 | ID=Msa0659540-mRNA-1:exon:20666;Parent=Msa0659540-mRNA-1 |
| chr4_3 | exon | 69933642 | 69933821 | 69933642 | ID=Msa0659540-mRNA-1:exon:20665;Parent=Msa0659540-mRNA-1 |
| chr4_3 | CDS | 69935271 | 69935388 | 69935271 | ID=Msa0659540-mRNA-1:cds;Parent=Msa0659540-mRNA-1 |
| chr4_3 | CDS | 69934653 | 69934785 | 69934653 | ID=Msa0659540-mRNA-1:cds;Parent=Msa0659540-mRNA-1 |
| chr4_3 | CDS | 69934176 | 69934314 | 69934176 | ID=Msa0659540-mRNA-1:cds;Parent=Msa0659540-mRNA-1 |
| chr4_3 | CDS | 69933642 | 69933821 | 69933642 | ID=Msa0659540-mRNA-1:cds;Parent=Msa0659540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
