AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0467060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0467060 MtrunA17_Chr3g0120781 94.848 427 20 1 1 427 1 425 0.0 838
Msa0467060 MtrunA17_Chr6g0466721 78.841 397 78 2 31 427 2 392 0.0 647
Msa0467060 MtrunA17_Chr3g0120771 65.496 484 108 8 1 427 1 482 0.0 603
Msa0467060 MtrunA17_Chr6g0466711 89.888 89 9 0 257 345 1 89 3.47e-53 172
Msa0467060 MtrunA17_Chr6g0466701 69.231 117 36 0 24 140 4 120 4.72e-52 171
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0467060 AT4G25330.1 34.921 189 121 2 21 208 14 201 8.38e-32 121

Find 92 sgRNAs with CRISPR-Local

Find 439 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCACAAGAAGCTTGCATTTC+TGG 0.094771 3_3:+68208967 Msa0467060:CDS
ATACCATATATATACTTAAA+TGG 0.185219 3_3:-68209158 None:intergenic
TGAAGGCCTACCTCAGATTT+AGG 0.217628 3_3:-68208430 None:intergenic
GCAGTCAACTTTCCTTCATT+TGG 0.248052 3_3:-68206786 None:intergenic
GAAGATGTTATGATGTAATT+TGG 0.259481 3_3:-68208036 None:intergenic
TCCAGCTGTGGCTTTGTTCT+TGG 0.265674 3_3:+68206857 Msa0467060:CDS
ACCTGTTTCCGTTCAAGTTC+AGG 0.273946 3_3:+68202722 Msa0467060:CDS
GGAAGCTTGTTAAGGGTGTT+AGG 0.294916 3_3:+68202757 Msa0467060:CDS
AATGCAAATGTCACCAATTT+CGG 0.311234 3_3:-68206811 None:intergenic
TTTATCCTGTCCTGGTTACA+TGG 0.325135 3_3:+68206762 Msa0467060:CDS
TTATCTTCCATGCTTTCGTC+AGG 0.351621 3_3:-68207796 None:intergenic
GCTTCTTGTGCAGCCGCACT+TGG 0.370760 3_3:-68208955 None:intergenic
ATCACAATCTGGACAGGAAT+TGG 0.382289 3_3:+68206902 Msa0467060:CDS
TCCTGAACTTGAACGGAAAC+AGG 0.382857 3_3:-68202723 None:intergenic
TACTTAAATGGGAAATAATC+TGG 0.387959 3_3:-68209146 None:intergenic
AAGTTGACTGCTGCCGAAAT+TGG 0.405877 3_3:+68206798 Msa0467060:CDS
TTGTTCAGTGTGCAACATAA+TGG 0.408316 3_3:-68207980 None:intergenic
TGTGTACCTTTATCCTGTCC+TGG 0.409349 3_3:+68206754 Msa0467060:CDS
TGAATGTCGGAAGCTTGTTA+AGG 0.417479 3_3:+68202749 Msa0467060:CDS
TATGGTTACGTTGGAGGAAA+AGG 0.420140 3_3:+68202590 Msa0467060:CDS
AATTTGAAGGTTGTACATTC+AGG 0.426606 3_3:+68208872 Msa0467060:CDS
AAGAACTCTACAGCTGTTGA+TGG 0.426928 3_3:-68207883 None:intergenic
TACCATATATATACTTAAAT+GGG 0.431382 3_3:-68209157 None:intergenic
CTTTGTTCTTGGAGATTACA+AGG 0.432464 3_3:+68206868 Msa0467060:CDS
GAATGTCGGAAGCTTGTTAA+GGG 0.438452 3_3:+68202750 Msa0467060:CDS
GGCACCCACAACAGATCGTT+TGG 0.446503 3_3:-68207138 None:intergenic
ATGTAACCAGGACAGGATAA+AGG 0.447391 3_3:-68206760 None:intergenic
AAACAAACCTTCAGGAGAAC+AGG 0.449635 3_3:-68207159 None:intergenic
CGGTGCATGGTACACCGTTA+TGG 0.449853 3_3:+68202572 Msa0467060:CDS
GTGGGTGCCTGTTCTCCTGA+AGG 0.452638 3_3:+68207152 Msa0467060:CDS
AGACTACTCCGAGGTTGAAA+TGG 0.454523 3_3:+68202407 Msa0467060:exon
TCATAGAAGCGAAGATCATC+AGG 0.457906 3_3:-68202804 None:intergenic
CGGAGTAGTCTAGTGTAGAA+AGG 0.461818 3_3:-68202395 None:intergenic
TACATCATAACATCTTCAAC+TGG 0.462959 3_3:+68208042 Msa0467060:CDS
TCCAAGAACAAAGCCACAGC+TGG 0.465807 3_3:-68206858 None:intergenic
ATTTCTCTCTTCGCCGGCGT+CGG 0.467245 3_3:-68202489 None:intergenic
GAAGCTTGTTAAGGGTGTTA+GGG 0.472459 3_3:+68202758 Msa0467060:CDS
GAAGATATTGTCTTCTTCAT+CGG 0.481912 3_3:-68202643 None:intergenic
TTCATTTGGCCCATGTAACC+AGG 0.482362 3_3:-68206772 None:intergenic
TAGAAGGAGTAGCAATTTGA+AGG 0.484742 3_3:+68208859 Msa0467060:CDS
TGGTTACATGGGCCAAATGA+AGG 0.494473 3_3:+68206774 Msa0467060:CDS
AAAAGGAAACACTTCGAGTA+AGG 0.495048 3_3:+68202607 Msa0467060:CDS
TATATCTCCAATGATAAACT+TGG 0.495829 3_3:-68207946 None:intergenic
CACCGTTATGGTTACGTTGG+AGG 0.498761 3_3:+68202584 Msa0467060:CDS
TTTCTCTGCCATTTCAACCT+CGG 0.500358 3_3:-68202415 None:intergenic
CACAGGATGGAAACAATAGA+AGG 0.503654 3_3:+68208843 Msa0467060:CDS
TGTCTTTCAGAATGCATCAC+AGG 0.505039 3_3:+68208826 Msa0467060:intron
CAAGATTGCCAGTGCTAAGA+GGG 0.506155 3_3:+68208907 Msa0467060:CDS
AATGTGTGTATGATTCTGAT+AGG 0.508534 3_3:+68207838 Msa0467060:CDS
CGCGCCAAACGATCTGTTGT+GGG 0.514658 3_3:+68207134 Msa0467060:CDS
GGAGTAGTCTAGTGTAGAAA+GGG 0.514709 3_3:-68202394 None:intergenic
ATTCTTCGAAACTCCGACGC+CGG 0.520295 3_3:+68202476 Msa0467060:CDS
TCAAGATTGCCAGTGCTAAG+AGG 0.527389 3_3:+68208906 Msa0467060:CDS
TTCCTCCAACGTAACCATAA+CGG 0.536523 3_3:-68202586 None:intergenic
GTGCAACATAATGGCACCCC+TGG 0.537920 3_3:-68207971 None:intergenic
TATCTTCCATGCTTTCGTCA+GGG 0.539922 3_3:-68207795 None:intergenic
TTGGCCCATGTAACCAGGAC+AGG 0.541376 3_3:-68206767 None:intergenic
AGGAGACTAGAATCACAATC+TGG 0.543384 3_3:+68206891 Msa0467060:CDS
TATTCATGAAATCTGAAACT+AGG 0.544715 3_3:+68208997 Msa0467060:exon
ACCCGCATTTCTCTCTTCGC+CGG 0.544935 3_3:-68202495 None:intergenic
CTATGATGCTGTTGTTGATG+CGG 0.545847 3_3:+68202821 Msa0467060:CDS
TTCATAATCCTGAACTTGAA+CGG 0.546295 3_3:-68202730 None:intergenic
TTATCCTGTCCTGGTTACAT+GGG 0.548307 3_3:+68206763 Msa0467060:CDS
GCCGGCGAAGAGAGAAATGC+GGG 0.550980 3_3:+68202494 Msa0467060:CDS
ACTAGAATCACAATCTGGAC+AGG 0.563849 3_3:+68206896 Msa0467060:CDS
GAAACTACGAAGACGGTGCA+TGG 0.564040 3_3:+68202559 Msa0467060:CDS
AAACAAATCCCTCTTAGCAC+TGG 0.565621 3_3:-68208915 None:intergenic
TCATAACATCTTCAACTGGC+AGG 0.571205 3_3:+68208046 Msa0467060:CDS
AAATGGGAAATAATCTGGTA+CGG 0.574331 3_3:-68209141 None:intergenic
AAGCATGGAAGATAAAGAGT+TGG 0.577522 3_3:+68207804 Msa0467060:CDS
AGTCAGCCCTGACGAAAGCA+TGG 0.581574 3_3:+68207789 Msa0467060:intron
ACGCGCCAAACGATCTGTTG+TGG 0.589617 3_3:+68207133 Msa0467060:CDS
ATCATTGGAGATATATACCA+GGG 0.613270 3_3:+68207954 Msa0467060:CDS
AAGTTCAGGATTATGAATGT+CGG 0.614070 3_3:+68202736 Msa0467060:CDS
TATCATTGGAGATATATACC+AGG 0.616124 3_3:+68207953 Msa0467060:CDS
TTGGTTGTGATCTTCCACAA+AGG 0.616755 3_3:+68206921 Msa0467060:CDS
CGGAGTTTCGAAGAATGAAA+CGG 0.617296 3_3:-68202469 None:intergenic
ATGTGTGTATGATTCTGATA+GGG 0.622574 3_3:+68207839 Msa0467060:CDS
TTTCAGAATGCATCACAGGA+TGG 0.624598 3_3:+68208830 Msa0467060:intron
TGCCACACCATGTTTCACAC+TGG 0.624600 3_3:-68209114 None:intergenic
AACACTGTTTCCTAAATCTG+AGG 0.629543 3_3:+68208420 Msa0467060:CDS
AAAAGAGCACGATCCAGCTG+TGG 0.646327 3_3:+68206845 Msa0467060:CDS
ACAAAATCAAAATTACATCA+CGG 0.651230 3_3:+68202530 Msa0467060:CDS
GTACACCGTTATGGTTACGT+TGG 0.652740 3_3:+68202581 Msa0467060:CDS
GAATTTCGAAACTACGAAGA+CGG 0.658399 3_3:+68202552 Msa0467060:CDS
AATTTGCTGATCACCAAGTG+CGG 0.680550 3_3:+68208942 Msa0467060:CDS
GGCGGATCCAGTGTGAAACA+TGG 0.683700 3_3:+68209107 Msa0467060:three_prime_UTR
CGCCGGCGAAGAGAGAAATG+CGG 0.696234 3_3:+68202493 Msa0467060:CDS
ATCCAGTGTGAAACATGGTG+TGG 0.712406 3_3:+68209112 Msa0467060:three_prime_UTR
TCATTGGAGATATATACCAG+GGG 0.719859 3_3:+68207955 Msa0467060:CDS
TGTTCTTGGAGATTACAAGG+AGG 0.739840 3_3:+68206871 Msa0467060:CDS
TTCTACACTAGACTACTCCG+AGG 0.796836 3_3:+68202398 Msa0467060:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATGAAGTTAAATATTA+AGG + chr3_3:68202971-68202990 Msa0467060:intron 10.0%
!!! TAAAATCAATTATATTTTAG+AGG + chr3_3:68203727-68203746 Msa0467060:intron 10.0%
!! ATAAAAAATAAATATCAGAA+AGG - chr3_3:68207261-68207280 None:intergenic 10.0%
!!! ATTTAAAATAGAGATTTATA+CGG - chr3_3:68207452-68207471 None:intergenic 10.0%
!!! TAGTTTTCAATCATAATTTA+AGG + chr3_3:68203846-68203865 Msa0467060:intron 15.0%
!! TAATTGAATGCATATATTAA+TGG + chr3_3:68203892-68203911 Msa0467060:intron 15.0%
!! AATTGAATGCATATATTAAT+GGG + chr3_3:68203893-68203912 Msa0467060:intron 15.0%
!! AAATACTTGTATTAATTGAT+TGG + chr3_3:68203917-68203936 Msa0467060:intron 15.0%
!! AATACTTGTATTAATTGATT+GGG + chr3_3:68203918-68203937 Msa0467060:intron 15.0%
!!! ATAAAGATATTTTATGCATA+AGG + chr3_3:68204584-68204603 Msa0467060:intron 15.0%
!! GAAGTAAAATTTACTAAAAA+AGG - chr3_3:68206644-68206663 None:intergenic 15.0%
!! AATAAAAACTAAAACCAAAA+TGG + chr3_3:68206944-68206963 Msa0467060:CDS 15.0%
!! ATAAAAACTAAAACCAAAAT+GGG + chr3_3:68206945-68206964 Msa0467060:CDS 15.0%
!! AAATAAAAAATGAAAAAGTG+AGG - chr3_3:68207764-68207783 None:intergenic 15.0%
!!! ATGTAATTTTGATTTTGTTC+AGG - chr3_3:68202528-68202547 None:intergenic 20.0%
!! ACAAAATCAAAATTACATCA+CGG + chr3_3:68202530-68202549 Msa0467060:CDS 20.0%
!! CGTATGATTAAAAAAAATAC+CGG + chr3_3:68203063-68203082 Msa0467060:intron 20.0%
!!! TTTTTTCAATTAAGATTGCA+CGG - chr3_3:68203207-68203226 None:intergenic 20.0%
!! ATACTTGTATTAATTGATTG+GGG + chr3_3:68203919-68203938 Msa0467060:intron 20.0%
!! ATGAACTTCAATAATATGAT+TGG - chr3_3:68203964-68203983 None:intergenic 20.0%
!!! TATTTTCTGCATAAAGTTTA+AGG + chr3_3:68204022-68204041 Msa0467060:intron 20.0%
!!! AATATTGAAGTTAAGTATTG+TGG + chr3_3:68204359-68204378 Msa0467060:intron 20.0%
!! TAAGTAGATACGTATATTAA+TGG + chr3_3:68204551-68204570 Msa0467060:intron 20.0%
!! AAGTAGATACGTATATTAAT+GGG + chr3_3:68204552-68204571 Msa0467060:intron 20.0%
!! GCATAAAGTTCAAAATTAAT+TGG + chr3_3:68204599-68204618 Msa0467060:intron 20.0%
!!! AAAACACTTTTATTGCTAAA+TGG + chr3_3:68204686-68204705 Msa0467060:intron 20.0%
!! AATAGAATTTCAACTTCTAT+GGG + chr3_3:68205268-68205287 Msa0467060:intron 20.0%
!! TGAATTATTGAGATTACAAT+AGG + chr3_3:68206043-68206062 Msa0467060:intron 20.0%
!! TATGTAAATGCCTATATTAA+TGG + chr3_3:68206271-68206290 Msa0467060:intron 20.0%
!! ATGTAAATGCCTATATTAAT+GGG + chr3_3:68206272-68206291 Msa0467060:intron 20.0%
!! TAAGTAAATGCATGTATTAA+TGG + chr3_3:68206456-68206475 Msa0467060:intron 20.0%
!! AAGTAAATGCATGTATTAAT+GGG + chr3_3:68206457-68206476 Msa0467060:intron 20.0%
!!! GAAATTGTGAATGTTTTTAT+AGG + chr3_3:68206683-68206702 Msa0467060:intron 20.0%
!!! TTTTAGTTTTTATTCCTTTG+TGG - chr3_3:68206938-68206957 None:intergenic 20.0%
!! TTTCTCAACATACAAAATAA+CGG - chr3_3:68207041-68207060 None:intergenic 20.0%
!! AAAATTCTATGTAATAGTAG+AGG + chr3_3:68207184-68207203 Msa0467060:intron 20.0%
!! TAAAATTTGATTCAACTCAT+TGG + chr3_3:68207214-68207233 Msa0467060:intron 20.0%
!! AAAATTTGATTCAACTCATT+GGG + chr3_3:68207215-68207234 Msa0467060:intron 20.0%
!! TATTTATTTACTATACCTGT+AGG + chr3_3:68207378-68207397 Msa0467060:intron 20.0%
!!! AGTTGATGAATATGATAAAT+GGG - chr3_3:68207660-68207679 None:intergenic 20.0%
!!! AAGTTGATGAATATGATAAA+TGG - chr3_3:68207661-68207680 None:intergenic 20.0%
!! TTTATCATATTCATCAACTT+TGG + chr3_3:68207661-68207680 Msa0467060:intron 20.0%
!! CCTTGTTAAAATAATAACTT+AGG - chr3_3:68208188-68208207 None:intergenic 20.0%
!!! CCTAAGTTATTATTTTAACA+AGG + chr3_3:68208185-68208204 Msa0467060:intron 20.0%
!!! AATAATTTTGTAAGTGTTGT+GGG - chr3_3:68208251-68208270 None:intergenic 20.0%
!!! TAATAATTTTGTAAGTGTTG+TGG - chr3_3:68208252-68208271 None:intergenic 20.0%
!! CAACACTTACAAAATTATTA+TGG + chr3_3:68208252-68208271 Msa0467060:intron 20.0%
!!! AAAAATATCAAAGCATCAAT+AGG + chr3_3:68208397-68208416 Msa0467060:CDS 20.0%
!!! AATACAAATAACGTTTCTTT+TGG - chr3_3:68208568-68208587 None:intergenic 20.0%
!! ACATTTATCAATCTTATACT+TGG + chr3_3:68208599-68208618 Msa0467060:intron 20.0%
!! ATTAAAACTACAAAGTTATC+TGG - chr3_3:68208692-68208711 None:intergenic 20.0%
!!! ATTTTGATTTTGTTCAGGAA+CGG - chr3_3:68202523-68202542 None:intergenic 25.0%
! AAAAAAGCAGTAAAAACAGA+AGG - chr3_3:68202863-68202882 None:intergenic 25.0%
! GAAATGCTAAAAACTCAAAA+CGG - chr3_3:68202892-68202911 None:intergenic 25.0%
! GAAGTTAAATATTAAGGCAA+TGG + chr3_3:68202977-68202996 Msa0467060:intron 25.0%
!! GATTAAAAAAAATACCGGTT+TGG + chr3_3:68203068-68203087 Msa0467060:intron 25.0%
! AAAAATATGGGATAGTTGAT+TGG - chr3_3:68203380-68203399 None:intergenic 25.0%
! CTCTGTTTGGTAAAAAATAT+GGG - chr3_3:68203392-68203411 None:intergenic 25.0%
!!! GTCAATTCTAGAATCAATTT+CGG + chr3_3:68203766-68203785 Msa0467060:intron 25.0%
! TACTTGTATTAATTGATTGG+GGG + chr3_3:68203920-68203939 Msa0467060:intron 25.0%
!!! CATCTAAATTTTCTAAAGCT+AGG - chr3_3:68204053-68204072 None:intergenic 25.0%
!!! TTAAAGTTTTAGCTATGAGT+TGG + chr3_3:68204139-68204158 Msa0467060:intron 25.0%
!!! TACTTTTTCACATTCATTTC+TGG + chr3_3:68204428-68204447 Msa0467060:intron 25.0%
! CAAGTATTTACACAAAACTA+TGG - chr3_3:68204513-68204532 None:intergenic 25.0%
!! GTTTAAGATTAAGATGAAGT+TGG + chr3_3:68204624-68204643 Msa0467060:intron 25.0%
!! AGTAACAATTCTAATTTTCC+TGG - chr3_3:68204923-68204942 None:intergenic 25.0%
!!! TCATTTTTACGCTTTTCTAA+TGG - chr3_3:68205121-68205140 None:intergenic 25.0%
! CAATAGAATTTCAACTTCTA+TGG + chr3_3:68205267-68205286 Msa0467060:intron 25.0%
!! TTCTACTAAATTTGAAGCAT+GGG - chr3_3:68205687-68205706 None:intergenic 25.0%
!! TTTCTACTAAATTTGAAGCA+TGG - chr3_3:68205688-68205707 None:intergenic 25.0%
! TTACCAAATAATGATGAAGT+TGG + chr3_3:68205762-68205781 Msa0467060:intron 25.0%
!!! CTAGTTTTCTAATATGGTAA+TGG - chr3_3:68205973-68205992 None:intergenic 25.0%
! TGATAAAGTTCATTTATGCA+TGG + chr3_3:68206239-68206258 Msa0467060:intron 25.0%
! ATGTATCTACCCATTAATAT+AGG - chr3_3:68206284-68206303 None:intergenic 25.0%
! GGCAATACAAACATTTAATT+TGG - chr3_3:68206369-68206388 None:intergenic 25.0%
! ATGCATACAATATCTTTACA+TGG - chr3_3:68206488-68206507 None:intergenic 25.0%
!!! ATTGTGAATGTTTTTATAGG+TGG + chr3_3:68206686-68206705 Msa0467060:intron 25.0%
!!! ATTTTTCGAAAGAATGCAAA+AGG + chr3_3:68206968-68206987 Msa0467060:CDS 25.0%
!!! AAAATAACGGAAAGTACTTT+GGG - chr3_3:68207028-68207047 None:intergenic 25.0%
!!! AATTTTAGAAACAAACCTTC+AGG - chr3_3:68207170-68207189 None:intergenic 25.0%
! TAGAGAAAAATTGATAAGTC+AGG - chr3_3:68207577-68207596 None:intergenic 25.0%
! AAAATGAAAAAGTGAGGAAA+AGG - chr3_3:68207758-68207777 None:intergenic 25.0%
!! CATTTTTCCAAGTTTATCAT+TGG + chr3_3:68207939-68207958 Msa0467060:CDS 25.0%
! TATATCTCCAATGATAAACT+TGG - chr3_3:68207949-68207968 None:intergenic 25.0%
! GAAGATGTTATGATGTAATT+TGG - chr3_3:68208039-68208058 None:intergenic 25.0%
!!! ATTTTGATGAATAGCTTACT+TGG + chr3_3:68208113-68208132 Msa0467060:intron 25.0%
!! TTTTGATGAATAGCTTACTT+GGG + chr3_3:68208114-68208133 Msa0467060:intron 25.0%
!! GAGGAAATAAATTTGTTTGA+AGG - chr3_3:68208450-68208469 None:intergenic 25.0%
! TCCTCCAAAGAATAATTTAA+CGG + chr3_3:68208476-68208495 Msa0467060:intron 25.0%
!! TATTCATGAAATCTGAAACT+AGG + chr3_3:68208997-68209016 Msa0467060:exon 25.0%
GAAGATATTGTCTTCTTCAT+CGG - chr3_3:68202646-68202665 None:intergenic 30.0%
!!! ACCTTCTTTTTTCGAATCAT+TGG + chr3_3:68202668-68202687 Msa0467060:CDS 30.0%
TCCAATGATTCGAAAAAAGA+AGG - chr3_3:68202672-68202691 None:intergenic 30.0%
TTCATAATCCTGAACTTGAA+CGG - chr3_3:68202733-68202752 None:intergenic 30.0%
AAGTTCAGGATTATGAATGT+CGG + chr3_3:68202736-68202755 Msa0467060:CDS 30.0%
ATATTAAGGCAATGGTATGT+TGG + chr3_3:68202985-68203004 Msa0467060:intron 30.0%
AAAAATGACAGATACCAAAC+CGG - chr3_3:68203085-68203104 None:intergenic 30.0%
CCAAACACTACAAATTCAAT+CGG + chr3_3:68203298-68203317 Msa0467060:intron 30.0%
GCTCTGTTTGGTAAAAAATA+TGG - chr3_3:68203393-68203412 None:intergenic 30.0%
!! TTCGAGATTGATTGATTTTG+TGG + chr3_3:68203475-68203494 Msa0467060:intron 30.0%
!! AGATTGATTGATTTTGTGGA+TGG + chr3_3:68203479-68203498 Msa0467060:intron 30.0%
!! TCTGACTAAAATTGAGTTGA+AGG + chr3_3:68203600-68203619 Msa0467060:intron 30.0%
AGAATTGACTATGACATGTT+TGG - chr3_3:68203755-68203774 None:intergenic 30.0%
ACATGACTGTATCAATTGAT+TGG + chr3_3:68203809-68203828 Msa0467060:intron 30.0%
CATGACTGTATCAATTGATT+GGG + chr3_3:68203810-68203829 Msa0467060:intron 30.0%
ATGACTGTATCAATTGATTG+GGG + chr3_3:68203811-68203830 Msa0467060:intron 30.0%
ACTTGTATTAATTGATTGGG+GGG + chr3_3:68203921-68203940 Msa0467060:intron 30.0%
ATTCATGTATGTAGCATGAA+TGG + chr3_3:68203982-68204001 Msa0467060:intron 30.0%
TTCATGTATGTAGCATGAAT+GGG + chr3_3:68203983-68204002 Msa0467060:intron 30.0%
CTTTAATTCATGTTGCTAGA+CGG - chr3_3:68204125-68204144 None:intergenic 30.0%
ACATAGCGAATAACTCAAAA+TGG - chr3_3:68204275-68204294 None:intergenic 30.0%
! ACTTTAGACCGTTCAATTTT+TGG + chr3_3:68204386-68204405 Msa0467060:intron 30.0%
! CTTTAGACCGTTCAATTTTT+GGG + chr3_3:68204387-68204406 Msa0467060:intron 30.0%
! TTTAGACCGTTCAATTTTTG+GGG + chr3_3:68204388-68204407 Msa0467060:intron 30.0%
TGATTGTGTGTGATTTGAAT+TGG + chr3_3:68204458-68204477 Msa0467060:intron 30.0%
ACCATTAACCATAGAATTAG+TGG + chr3_3:68204890-68204909 Msa0467060:intron 30.0%
TCCACTAATTCTATGGTTAA+TGG - chr3_3:68204894-68204913 None:intergenic 30.0%
AACCATAGAATTAGTGGAAT+TGG + chr3_3:68204896-68204915 Msa0467060:intron 30.0%
! TAGAATTGTTACTCTTTTGC+TGG + chr3_3:68204930-68204949 Msa0467060:intron 30.0%
CTGTTATCATAGATTCAAGA+AGG - chr3_3:68204984-68205003 None:intergenic 30.0%
TATGATAACAGATAGAAGCA+TGG + chr3_3:68204993-68205012 Msa0467060:intron 30.0%
AATTTCAACTTCTATGGGAA+TGG + chr3_3:68205273-68205292 Msa0467060:intron 30.0%
TCTACCATCTCATTAATTAG+TGG - chr3_3:68205310-68205329 None:intergenic 30.0%
! ATTGATTCAATTCACGCAAT+TGG - chr3_3:68205396-68205415 None:intergenic 30.0%
TCCTATCATGTTCAATACTT+CGG - chr3_3:68205732-68205751 None:intergenic 30.0%
TTGAACATGATAGGAATCAA+AGG + chr3_3:68205737-68205756 Msa0467060:intron 30.0%
ACACCAACTTCATCATTATT+TGG - chr3_3:68205768-68205787 None:intergenic 30.0%
! ATTGAGAGAACTATCTTTTC+TGG - chr3_3:68205820-68205839 None:intergenic 30.0%
ACCATATTAGAAAACTAGCT+AGG + chr3_3:68205975-68205994 Msa0467060:intron 30.0%
CCATATTAGAAAACTAGCTA+GGG + chr3_3:68205976-68205995 Msa0467060:intron 30.0%
CATATTAGAAAACTAGCTAG+GGG + chr3_3:68205977-68205996 Msa0467060:intron 30.0%
TTTAGACCTTACATGTTTAC+TGG + chr3_3:68206080-68206099 Msa0467060:intron 30.0%
CTATAACCAGTAAACATGTA+AGG - chr3_3:68206089-68206108 None:intergenic 30.0%
GCATAAATGAACTTTATCAG+AGG - chr3_3:68206238-68206257 None:intergenic 30.0%
ATGTTTGTATTGCCATTCTT+TGG + chr3_3:68206375-68206394 Msa0467060:intron 30.0%
TGTTTGTATTGCCATTCTTT+GGG + chr3_3:68206376-68206395 Msa0467060:intron 30.0%
!! CTTCTAGGTTTTATAAAGCT+AGG - chr3_3:68206527-68206546 None:intergenic 30.0%
! AGCAATCTAAAGCCTTAATA+CGG - chr3_3:68206554-68206573 None:intergenic 30.0%
!!! AATTGAAGTTTTAGCTGAGT+TGG + chr3_3:68206617-68206636 Msa0467060:intron 30.0%
AATGCAAATGTCACCAATTT+CGG - chr3_3:68206814-68206833 None:intergenic 30.0%
! TCTTTCGAAAAATCCCATTT+TGG - chr3_3:68206961-68206980 None:intergenic 30.0%
!! CAAAATAACGGAAAGTACTT+TGG - chr3_3:68207029-68207048 None:intergenic 30.0%
ATATCTTATATTCCTCTCCA+GGG + chr3_3:68207104-68207123 Msa0467060:intron 30.0%
!! ATATGTGATTTTGACAACCA+TGG - chr3_3:68207332-68207351 None:intergenic 30.0%
ATAGATACAATTCCTCTAGT+AGG + chr3_3:68207489-68207508 Msa0467060:intron 30.0%
AATGTGTGTATGATTCTGAT+AGG + chr3_3:68207838-68207857 Msa0467060:CDS 30.0%
ATGTGTGTATGATTCTGATA+GGG + chr3_3:68207839-68207858 Msa0467060:CDS 30.0%
TATCATTGGAGATATATACC+AGG + chr3_3:68207953-68207972 Msa0467060:CDS 30.0%
ATCATTGGAGATATATACCA+GGG + chr3_3:68207954-68207973 Msa0467060:CDS 30.0%
! TCAAAAAGTCACAAAGCTTT+TGG - chr3_3:68208011-68208030 None:intergenic 30.0%
TACATCATAACATCTTCAAC+TGG + chr3_3:68208042-68208061 Msa0467060:CDS 30.0%
TAACACAGACATCAATGTTT+AGG - chr3_3:68208090-68208109 None:intergenic 30.0%
!!! ATTATTTTAACAAGGCTTCC+AGG + chr3_3:68208193-68208212 Msa0467060:intron 30.0%
GTGGTAATTGAAAAACAAGT+AGG + chr3_3:68208370-68208389 Msa0467060:CDS 30.0%
! ATTATTCTTTGGAGGAAAAG+AGG - chr3_3:68208472-68208491 None:intergenic 30.0%
TGAGCCGTTAAATTATTCTT+TGG - chr3_3:68208483-68208502 None:intergenic 30.0%
AATAAGACTTTCAGAACCAA+TGG - chr3_3:68208661-68208680 None:intergenic 30.0%
AGTGTCTAATTAAGTGAACT+TGG - chr3_3:68208726-68208745 None:intergenic 30.0%
AGTTCACTTAATTAGACACT+AGG + chr3_3:68208726-68208745 Msa0467060:intron 30.0%
AATTTGAAGGTTGTACATTC+AGG + chr3_3:68208872-68208891 Msa0467060:CDS 30.0%
! GTATATAATTTTGTGGGCAT+GGG + chr3_3:68209086-68209105 Msa0467060:three_prime_UTR 30.0%
AAATGGGAAATAATCTGGTA+CGG - chr3_3:68209144-68209163 None:intergenic 30.0%
GAATTTCGAAACTACGAAGA+CGG + chr3_3:68202552-68202571 Msa0467060:CDS 35.0%
AAAAGGAAACACTTCGAGTA+AGG + chr3_3:68202607-68202626 Msa0467060:CDS 35.0%
CCGATTGAATTTGTAGTGTT+TGG - chr3_3:68203301-68203320 None:intergenic 35.0%
GTACAATTTACGTGCATGTT+TGG + chr3_3:68203526-68203545 Msa0467060:intron 35.0%
!! AAGCTACAATTTCTAGCTTC+AGG + chr3_3:68203704-68203723 Msa0467060:intron 35.0%
!! TTCTAGAATCAATTTCGGCT+TGG + chr3_3:68203771-68203790 Msa0467060:intron 35.0%
TGACTGTATCAATTGATTGG+GGG + chr3_3:68203812-68203831 Msa0467060:intron 35.0%
AATTGATTGGGGGATTTGAA+GGG + chr3_3:68203822-68203841 Msa0467060:intron 35.0%
! AATTTAAGGTCATCCATGCA+TGG + chr3_3:68203860-68203879 Msa0467060:intron 35.0%
!! ATTACAAAAGCATCCATGCA+TGG - chr3_3:68203876-68203895 None:intergenic 35.0%
TGCATTCCATATTAGAGCTT+TGG + chr3_3:68204071-68204090 Msa0467060:intron 35.0%
TCACTTCCCCAAAAATTGAA+CGG - chr3_3:68204397-68204416 None:intergenic 35.0%
!! TCTCTCTCTGTTTTTCTACT+TGG - chr3_3:68204775-68204794 None:intergenic 35.0%
! CATAATCCTTCGAGTTACTT+TGG - chr3_3:68204813-68204832 None:intergenic 35.0%
GTCCAATTCCACTAATTCTA+TGG - chr3_3:68204901-68204920 None:intergenic 35.0%
! TGATTGTTGCTCTAAGTTAG+AGG + chr3_3:68205138-68205157 Msa0467060:intron 35.0%
! GAAGCAGTGAAATTGATAGT+AGG + chr3_3:68205199-68205218 Msa0467060:intron 35.0%
TCATTAATTAGTGGCAGGAT+TGG - chr3_3:68205301-68205320 None:intergenic 35.0%
ATGGTAGACTTGTAATCTTG+AGG + chr3_3:68205322-68205341 Msa0467060:intron 35.0%
!! ACCGAAGTATTGAACATGAT+AGG + chr3_3:68205728-68205747 Msa0467060:intron 35.0%
GATTGCAGAGAATGAATTTG+TGG + chr3_3:68205853-68205872 Msa0467060:intron 35.0%
!!! CCCTAGCTAGTTTTCTAATA+TGG - chr3_3:68205979-68205998 None:intergenic 35.0%
TGAGATTACAATAGGTGCAA+TGG + chr3_3:68206051-68206070 Msa0467060:intron 35.0%
TCACTGAAACGTAGTTACTA+GGG + chr3_3:68206126-68206145 Msa0467060:intron 35.0%
CTTTGTTCTTGGAGATTACA+AGG + chr3_3:68206868-68206887 Msa0467060:CDS 35.0%
AGAATGCAAAAGGTAAGTAG+TGG + chr3_3:68206978-68206997 Msa0467060:intron 35.0%
GAATGCAAAAGGTAAGTAGT+GGG + chr3_3:68206979-68206998 Msa0467060:intron 35.0%
GATATCTTATATTCCTCTCC+AGG + chr3_3:68207103-68207122 Msa0467060:intron 35.0%
! TAGGTTGAACTTGCGAATAT+GGG + chr3_3:68207549-68207568 Msa0467060:intron 35.0%
AAGCATGGAAGATAAAGAGT+TGG + chr3_3:68207804-68207823 Msa0467060:CDS 35.0%
TCATTGGAGATATATACCAG+GGG + chr3_3:68207955-68207974 Msa0467060:CDS 35.0%
TTGTTCAGTGTGCAACATAA+TGG - chr3_3:68207983-68208002 None:intergenic 35.0%
!! ACTATTGATTCATCCGTGAA+AGG + chr3_3:68208143-68208162 Msa0467060:intron 35.0%
!! ATAACTTAGGTTGACGAATC+AGG - chr3_3:68208175-68208194 None:intergenic 35.0%
AAATTACTGCCAAAACAACC+TGG - chr3_3:68208214-68208233 None:intergenic 35.0%
TATTATGGATCTGCAAGTCT+AGG + chr3_3:68208267-68208286 Msa0467060:intron 35.0%
!! TGTTTTTCAATTACCACCCA+TGG - chr3_3:68208367-68208386 None:intergenic 35.0%
AACACTGTTTCCTAAATCTG+AGG + chr3_3:68208420-68208439 Msa0467060:CDS 35.0%
GCCGTTAAATTATTCTTTGG+AGG - chr3_3:68208480-68208499 None:intergenic 35.0%
GTCTAATTAAGTGAACTTGG+TGG - chr3_3:68208723-68208742 None:intergenic 35.0%
ACTTAATTAGACACTAGGCA+CGG + chr3_3:68208731-68208750 Msa0467060:intron 35.0%
TAGAAGGAGTAGCAATTTGA+AGG + chr3_3:68208859-68208878 Msa0467060:CDS 35.0%
!! TGCTAAGAGGGATTTGTTTT+CGG + chr3_3:68208919-68208938 Msa0467060:CDS 35.0%
! TTGTCCTCTATACTCGTTTT+TGG + chr3_3:68209055-68209074 Msa0467060:three_prime_UTR 35.0%
ACAACCAAAAACGAGTATAG+AGG - chr3_3:68209062-68209081 None:intergenic 35.0%
!!! TCTATACTCGTTTTTGGTTG+TGG + chr3_3:68209061-68209080 Msa0467060:three_prime_UTR 35.0%
!!! CTATACTCGTTTTTGGTTGT+GGG + chr3_3:68209062-68209081 Msa0467060:three_prime_UTR 35.0%
! TGTGGGCGTATATAATTTTG+TGG + chr3_3:68209079-68209098 Msa0467060:three_prime_UTR 35.0%
! GTGGGCGTATATAATTTTGT+GGG + chr3_3:68209080-68209099 Msa0467060:three_prime_UTR 35.0%
! CGTATATAATTTTGTGGGCA+TGG + chr3_3:68209085-68209104 Msa0467060:three_prime_UTR 35.0%
GGAGTAGTCTAGTGTAGAAA+GGG - chr3_3:68202397-68202416 None:intergenic 40.0%
! TTTCTCTGCCATTTCAACCT+CGG - chr3_3:68202418-68202437 None:intergenic 40.0%
CGGAGTTTCGAAGAATGAAA+CGG - chr3_3:68202472-68202491 None:intergenic 40.0%
TTCCTCCAACGTAACCATAA+CGG - chr3_3:68202589-68202608 None:intergenic 40.0%
TATGGTTACGTTGGAGGAAA+AGG + chr3_3:68202590-68202609 Msa0467060:CDS 40.0%
!! TGAATGTCGGAAGCTTGTTA+AGG + chr3_3:68202749-68202768 Msa0467060:CDS 40.0%
!! GAATGTCGGAAGCTTGTTAA+GGG + chr3_3:68202750-68202769 Msa0467060:CDS 40.0%
!! GAAGCTTGTTAAGGGTGTTA+GGG + chr3_3:68202758-68202777 Msa0467060:CDS 40.0%
TCATAGAAGCGAAGATCATC+AGG - chr3_3:68202807-68202826 None:intergenic 40.0%
CTATGATGCTGTTGTTGATG+CGG + chr3_3:68202821-68202840 Msa0467060:CDS 40.0%
AGATTGCACGGATAAAACTG+AGG - chr3_3:68203195-68203214 None:intergenic 40.0%
ATCTGCTATCAGCTATAAGC+TGG + chr3_3:68203328-68203347 Msa0467060:intron 40.0%
TTACCAAACAGAGCCATAGT+TGG + chr3_3:68203399-68203418 Msa0467060:intron 40.0%
! AATCCAACTATGGCTCTGTT+TGG - chr3_3:68203405-68203424 None:intergenic 40.0%
! ACAGAGCCATAGTTGGATTT+TGG + chr3_3:68203406-68203425 Msa0467060:intron 40.0%
! CAGAGCCATAGTTGGATTTT+GGG + chr3_3:68203407-68203426 Msa0467060:intron 40.0%
! AGAGCCATAGTTGGATTTTG+GGG + chr3_3:68203408-68203427 Msa0467060:intron 40.0%
TACGTGCATGTTTGGTTATG+TGG + chr3_3:68203534-68203553 Msa0467060:intron 40.0%
TGCATGTTTGGTTATGTGGT+GGG + chr3_3:68203538-68203557 Msa0467060:intron 40.0%
CAATTGATTGGGGGATTTGA+AGG + chr3_3:68203821-68203840 Msa0467060:intron 40.0%
AATTGATTGGGGGGATTTGA+AGG + chr3_3:68203930-68203949 Msa0467060:intron 40.0%
ATTGATTGGGGGGATTTGAA+GGG + chr3_3:68203931-68203950 Msa0467060:intron 40.0%
TGTATGTAGCATGAATGGGT+AGG + chr3_3:68203987-68204006 Msa0467060:intron 40.0%
! GGCAATCCAAAGCTCTAATA+TGG - chr3_3:68204080-68204099 None:intergenic 40.0%
TTCTTCGACTATCAGCACTA+CGG + chr3_3:68204732-68204751 Msa0467060:intron 40.0%
TCTACTTGGCATAACAGACT+AGG - chr3_3:68204761-68204780 None:intergenic 40.0%
AACAGAGAGAGAATAAGCAG+TGG + chr3_3:68204783-68204802 Msa0467060:intron 40.0%
GATTATGAGACCATGGTACA+GGG + chr3_3:68204826-68204845 Msa0467060:intron 40.0%
AGAATTAGTGGAATTGGACC+AGG + chr3_3:68204902-68204921 Msa0467060:intron 40.0%
GTCAAGTGTGCCATAAGTTT+GGG - chr3_3:68205021-68205040 None:intergenic 40.0%
TGTCAAGTGTGCCATAAGTT+TGG - chr3_3:68205022-68205041 None:intergenic 40.0%
! TTACGCTTTTCTAATGGCTC+AGG - chr3_3:68205115-68205134 None:intergenic 40.0%
! CCTTGAGCGTTTTTGCAAAA+TGG - chr3_3:68205230-68205249 None:intergenic 40.0%
! CCATTTTGCAAAAACGCTCA+AGG + chr3_3:68205227-68205246 Msa0467060:intron 40.0%
CCATCTCATTAATTAGTGGC+AGG - chr3_3:68205306-68205325 None:intergenic 40.0%
CCTGCCACTAATTAATGAGA+TGG + chr3_3:68205303-68205322 Msa0467060:intron 40.0%
TGCGTGAATTGAATCAATCG+TGG + chr3_3:68205398-68205417 Msa0467060:intron 40.0%
TGAGCTTCGCAATACGAAAA+TGG - chr3_3:68205463-68205482 None:intergenic 40.0%
! GCTTTGCATTGATGTGTGTT+TGG + chr3_3:68205507-68205526 Msa0467060:intron 40.0%
CAAGAATTCTTGGCAACTAG+GGG - chr3_3:68205552-68205571 None:intergenic 40.0%
CCAAGAATTCTTGGCAACTA+GGG - chr3_3:68205553-68205572 None:intergenic 40.0%
TCCAAGAATTCTTGGCAACT+AGG - chr3_3:68205554-68205573 None:intergenic 40.0%
! TGATCGGTTCCAAGAATTCT+TGG - chr3_3:68205562-68205581 None:intergenic 40.0%
! TTGTGGATTGTAACCAAGCT+AGG + chr3_3:68205606-68205625 Msa0467060:intron 40.0%
! TTGTGGATTGTAACCAAGCT+AGG + chr3_3:68205606-68205625 Msa0467060:intron 40.0%
AAGTTTAGTTGCTCCTAGCT+TGG - chr3_3:68205658-68205677 None:intergenic 40.0%
ACAGGTAGAACCTGTGATTA+AGG - chr3_3:68205792-68205811 None:intergenic 40.0%
TAATCACAGGTTCTACCTGT+CGG + chr3_3:68205792-68205811 Msa0467060:intron 40.0%
GAATGAATTTGTGGCCAAGA+CGG + chr3_3:68205862-68205881 Msa0467060:intron 40.0%
ATTAGAAAACTAGCTAGGGG+TGG + chr3_3:68205980-68205999 Msa0467060:intron 40.0%
! TACTGGTTATAGCCAGTAAC+AGG + chr3_3:68206097-68206116 Msa0467060:intron 40.0%
ACTGGTTATAGCCAGTAACA+GGG + chr3_3:68206098-68206117 Msa0467060:intron 40.0%
CTCACTGAAACGTAGTTACT+AGG + chr3_3:68206125-68206144 Msa0467060:intron 40.0%
ACGTAGTTACTAGGGAGTTA+AGG + chr3_3:68206134-68206153 Msa0467060:intron 40.0%
!! ATTGCCATTCTTTGGGTTGA+AGG + chr3_3:68206383-68206402 Msa0467060:intron 40.0%
!! TTGCCATTCTTTGGGTTGAA+GGG + chr3_3:68206384-68206403 Msa0467060:intron 40.0%
TAACCCTTCAACCCAAAGAA+TGG - chr3_3:68206390-68206409 None:intergenic 40.0%
CCTTAATACGGAATGCTTCT+AGG - chr3_3:68206542-68206561 None:intergenic 40.0%
!! CCTAGAAGCATTCCGTATTA+AGG + chr3_3:68206539-68206558 Msa0467060:intron 40.0%
ATGTAACCAGGACAGGATAA+AGG - chr3_3:68206763-68206782 None:intergenic 40.0%
TTTATCCTGTCCTGGTTACA+TGG + chr3_3:68206762-68206781 Msa0467060:CDS 40.0%
TTATCCTGTCCTGGTTACAT+GGG + chr3_3:68206763-68206782 Msa0467060:CDS 40.0%
GCAGTCAACTTTCCTTCATT+TGG - chr3_3:68206789-68206808 None:intergenic 40.0%
TGTTCTTGGAGATTACAAGG+AGG + chr3_3:68206871-68206890 Msa0467060:CDS 40.0%
AGGAGACTAGAATCACAATC+TGG + chr3_3:68206891-68206910 Msa0467060:CDS 40.0%
ACTAGAATCACAATCTGGAC+AGG + chr3_3:68206896-68206915 Msa0467060:CDS 40.0%
ATCACAATCTGGACAGGAAT+TGG + chr3_3:68206902-68206921 Msa0467060:CDS 40.0%
TTGGTTGTGATCTTCCACAA+AGG + chr3_3:68206921-68206940 Msa0467060:CDS 40.0%
AAACAAACCTTCAGGAGAAC+AGG - chr3_3:68207162-68207181 None:intergenic 40.0%
! ATTTTCCTCGTGACTCTGTT+AGG + chr3_3:68207296-68207315 Msa0467060:intron 40.0%
TTTGACAACCATGGTTACCA+AGG - chr3_3:68207323-68207342 None:intergenic 40.0%
AGAATCTGACATGATCCTAC+AGG - chr3_3:68207396-68207415 None:intergenic 40.0%
AGGATCATGTCAGATTCTAC+TGG + chr3_3:68207398-68207417 Msa0467060:intron 40.0%
GATACAATTCCTCTAGTAGG+TGG + chr3_3:68207492-68207511 Msa0467060:intron 40.0%
TAGTAAGATCCACCTACTAG+AGG - chr3_3:68207504-68207523 None:intergenic 40.0%
TGGATCTTACTATCCTTGAG+AGG + chr3_3:68207512-68207531 Msa0467060:intron 40.0%
CATATTCGCAAGTTCAACCT+AGG - chr3_3:68207550-68207569 None:intergenic 40.0%
! CTAGGTTGAACTTGCGAATA+TGG + chr3_3:68207548-68207567 Msa0467060:intron 40.0%
TATCTTCCATGCTTTCGTCA+GGG - chr3_3:68207798-68207817 None:intergenic 40.0%
TTATCTTCCATGCTTTCGTC+AGG - chr3_3:68207799-68207818 None:intergenic 40.0%
AAGAACTCTACAGCTGTTGA+TGG - chr3_3:68207886-68207905 None:intergenic 40.0%
TCATAACATCTTCAACTGGC+AGG + chr3_3:68208046-68208065 Msa0467060:CDS 40.0%
AATCAGGCATTCACCTTTCA+CGG - chr3_3:68208159-68208178 None:intergenic 40.0%
CCTGAAAAAAGACAGTGAAG+AGG - chr3_3:68208344-68208363 None:intergenic 40.0%
!!! CCTCTTCACTGTCTTTTTTC+AGG + chr3_3:68208341-68208360 Msa0467060:intron 40.0%
!!! ACTGTCTTTTTTCAGGCCAT+GGG + chr3_3:68208348-68208367 Msa0467060:intron 40.0%
! CTGTTTCCTAAATCTGAGGT+AGG + chr3_3:68208424-68208443 Msa0467060:intron 40.0%
! ATTCTTTGGAGGAAAAGAGG+AGG - chr3_3:68208469-68208488 None:intergenic 40.0%
TGGCTATTGGTCAAGACTAT+AGG + chr3_3:68208514-68208533 Msa0467060:intron 40.0%
!!! GTTTCTTTTGGTGCCTTAGA+CGG - chr3_3:68208556-68208575 None:intergenic 40.0%
!! CCAATGGACTACATGTTTGA+CGG - chr3_3:68208645-68208664 None:intergenic 40.0%
TGTCTTTCAGAATGCATCAC+AGG + chr3_3:68208826-68208845 Msa0467060:intron 40.0%
TTTCAGAATGCATCACAGGA+TGG + chr3_3:68208830-68208849 Msa0467060:intron 40.0%
CACAGGATGGAAACAATAGA+AGG + chr3_3:68208843-68208862 Msa0467060:CDS 40.0%
AAACAAATCCCTCTTAGCAC+TGG - chr3_3:68208918-68208937 None:intergenic 40.0%
!! AATTTGCTGATCACCAAGTG+CGG + chr3_3:68208942-68208961 Msa0467060:CDS 40.0%
! TATAATTTTGTGGGCATGGG+CGG + chr3_3:68209089-68209108 Msa0467060:three_prime_UTR 40.0%
CGGAGTAGTCTAGTGTAGAA+AGG - chr3_3:68202398-68202417 None:intergenic 45.0%
TTCTACACTAGACTACTCCG+AGG + chr3_3:68202398-68202417 Msa0467060:five_prime_UTR 45.0%
AGACTACTCCGAGGTTGAAA+TGG + chr3_3:68202407-68202426 Msa0467060:exon 45.0%
!!! ACGGTGTCGTTTTGTTTCGA+CGG - chr3_3:68202453-68202472 None:intergenic 45.0%
GTACACCGTTATGGTTACGT+TGG + chr3_3:68202581-68202600 Msa0467060:CDS 45.0%
! ACCTGTTTCCGTTCAAGTTC+AGG + chr3_3:68202722-68202741 Msa0467060:CDS 45.0%
TCCTGAACTTGAACGGAAAC+AGG - chr3_3:68202726-68202745 None:intergenic 45.0%
!! GGAAGCTTGTTAAGGGTGTT+AGG + chr3_3:68202757-68202776 Msa0467060:CDS 45.0%
! GAGCCATAGTTGGATTTTGG+GGG + chr3_3:68203409-68203428 Msa0467060:intron 45.0%
CTTCCCCCAAAATCCAACTA+TGG - chr3_3:68203415-68203434 None:intergenic 45.0%
GTGCATGTTTGGTTATGTGG+TGG + chr3_3:68203537-68203556 Msa0467060:intron 45.0%
TCAGGTTATTGCGCAGAGAA+CGG - chr3_3:68204101-68204120 None:intergenic 45.0%
TTCATGTTGCTAGACGGTTC+AGG - chr3_3:68204119-68204138 None:intergenic 45.0%
TGATGAACTGCATCAACGAG+AGG - chr3_3:68204219-68204238 None:intergenic 45.0%
! TTCTGCACTTCTTGCTGTCT+AGG - chr3_3:68204663-68204682 None:intergenic 45.0%
AGAGAGAGAATAAGCAGTGG+AGG + chr3_3:68204786-68204805 Msa0467060:intron 45.0%
CTCGAAGGATTATGAGACCA+TGG + chr3_3:68204819-68204838 Msa0467060:intron 45.0%
GGATTATGAGACCATGGTAC+AGG + chr3_3:68204825-68204844 Msa0467060:intron 45.0%
! CTCTTTTGCTGGTGATCAAG+AGG + chr3_3:68204941-68204960 Msa0467060:intron 45.0%
! TGGTGATCAAGAGGTACAGA+GGG + chr3_3:68204950-68204969 Msa0467060:intron 45.0%
AAGCATGGTGCCCAAACTTA+TGG + chr3_3:68205008-68205027 Msa0467060:intron 45.0%
ACTTATGGCACACTTGACAC+TGG + chr3_3:68205023-68205042 Msa0467060:intron 45.0%
TGCTTCCTCAACTGCAAATG+AGG - chr3_3:68205185-68205204 None:intergenic 45.0%
GCATCTGGATGTCACTCTTA+GGG - chr3_3:68205352-68205371 None:intergenic 45.0%
TATTTCTCCATGTGCGCATC+TGG - chr3_3:68205367-68205386 None:intergenic 45.0%
CATCAATGCAAAGCTGTTCC+AGG - chr3_3:68205501-68205520 None:intergenic 45.0%
CCCTAGTTGCCAAGAATTCT+TGG + chr3_3:68205550-68205569 Msa0467060:intron 45.0%
! AGTTGGTGTGCCTTAATCAC+AGG + chr3_3:68205779-68205798 Msa0467060:intron 45.0%
TGCCATTGATGTTTCCGTCT+TGG - chr3_3:68205879-68205898 None:intergenic 45.0%
CTGGTTATAGCCAGTAACAG+GGG + chr3_3:68206099-68206118 Msa0467060:intron 45.0%
CTATTGTAGCAGCAGCATCT+AGG + chr3_3:68206588-68206607 Msa0467060:intron 45.0%
GCATTCTCGCAAAAAAGACG+CGG + chr3_3:68206719-68206738 Msa0467060:CDS 45.0%
TGTGTACCTTTATCCTGTCC+TGG + chr3_3:68206754-68206773 Msa0467060:CDS 45.0%
TTCATTTGGCCCATGTAACC+AGG - chr3_3:68206775-68206794 None:intergenic 45.0%
TGGTTACATGGGCCAAATGA+AGG + chr3_3:68206774-68206793 Msa0467060:CDS 45.0%
AAGTTGACTGCTGCCGAAAT+TGG + chr3_3:68206798-68206817 Msa0467060:CDS 45.0%
! GCTGGATCGTGCTCTTTTAT+AGG - chr3_3:68206843-68206862 None:intergenic 45.0%
! TGTTAGGACCTTGGTAACCA+TGG + chr3_3:68207312-68207331 Msa0467060:intron 45.0%
CATGTCAGATTCTACTGGAC+TGG + chr3_3:68207403-68207422 Msa0467060:intron 45.0%
TTCAACCTAGGAACCAAGCT+TGG - chr3_3:68207538-68207557 None:intergenic 45.0%
AGCATGCTGGAAAGCAAAGT+AGG - chr3_3:68207632-68207651 None:intergenic 45.0%
TAAATGGGTGTAGAGCATGC+TGG - chr3_3:68207645-68207664 None:intergenic 45.0%
! ACAAGGCTTCCAGGTTGTTT+TGG + chr3_3:68208202-68208221 Msa0467060:intron 45.0%
!!! CACTGTCTTTTTTCAGGCCA+TGG + chr3_3:68208347-68208366 Msa0467060:intron 45.0%
TGAAGGCCTACCTCAGATTT+AGG - chr3_3:68208433-68208452 None:intergenic 45.0%
CAGTAGTAGAGCATGGCTAT+TGG + chr3_3:68208501-68208520 Msa0467060:intron 45.0%
GTCACATCATCAACCGTCTA+AGG + chr3_3:68208540-68208559 Msa0467060:intron 45.0%
! GACGGCATGCATTTTCATCA+GGG - chr3_3:68208627-68208646 None:intergenic 45.0%
! TGACGGCATGCATTTTCATC+AGG - chr3_3:68208628-68208647 None:intergenic 45.0%
CCGTCAAACATGTAGTCCAT+TGG + chr3_3:68208642-68208661 Msa0467060:intron 45.0%
! AGGCACGGCAGATTTTCATT+TGG + chr3_3:68208746-68208765 Msa0467060:intron 45.0%
TCAAGATTGCCAGTGCTAAG+AGG + chr3_3:68208906-68208925 Msa0467060:CDS 45.0%
CAAGATTGCCAGTGCTAAGA+GGG + chr3_3:68208907-68208926 Msa0467060:CDS 45.0%
GCACAAGAAGCTTGCATTTC+TGG + chr3_3:68208967-68208986 Msa0467060:CDS 45.0%
ATCCAGTGTGAAACATGGTG+TGG + chr3_3:68209112-68209131 Msa0467060:three_prime_UTR 45.0%
ATTCTTCGAAACTCCGACGC+CGG + chr3_3:68202476-68202495 Msa0467060:CDS 50.0%
GAAACTACGAAGACGGTGCA+TGG + chr3_3:68202559-68202578 Msa0467060:CDS 50.0%
CACCGTTATGGTTACGTTGG+AGG + chr3_3:68202584-68202603 Msa0467060:CDS 50.0%
GGAGGTCCAAAGTAACTCGA+AGG + chr3_3:68204804-68204823 Msa0467060:intron 50.0%
CTAACTCTTGCCCTGTACCA+TGG - chr3_3:68204839-68204858 None:intergenic 50.0%
AGAGTTAGACTGCCATGGCA+TGG + chr3_3:68204851-68204870 Msa0467060:intron 50.0%
GAGTTAGACTGCCATGGCAT+GGG + chr3_3:68204852-68204871 Msa0467060:intron 50.0%
! CTGGTGATCAAGAGGTACAG+AGG + chr3_3:68204949-68204968 Msa0467060:intron 50.0%
ATGGCACACTTGACACTGGA+TGG + chr3_3:68205027-68205046 Msa0467060:intron 50.0%
CTCTGCCTCATTTGCAGTTG+AGG + chr3_3:68205177-68205196 Msa0467060:intron 50.0%
CGCATCTGGATGTCACTCTT+AGG - chr3_3:68205353-68205372 None:intergenic 50.0%
TGCGAAGCTCAGAACAAAGC+TGG + chr3_3:68205472-68205491 Msa0467060:intron 50.0%
TCAGAACAAAGCTGGAAGCC+TGG + chr3_3:68205480-68205499 Msa0467060:intron 50.0%
GACATGTTGTGACGCGTGAT+CGG - chr3_3:68205578-68205597 None:intergenic 50.0%
CAACATGTCGCGCGTAATTG+TGG + chr3_3:68205589-68205608 Msa0467060:intron 50.0%
!!! CTATCTTTTCTGGTGCCGAC+AGG - chr3_3:68205810-68205829 None:intergenic 50.0%
GGCCAAGACGGAAACATCAA+TGG + chr3_3:68205874-68205893 Msa0467060:intron 50.0%
! ATGCACTGGCAAGGTTTGTG+TGG + chr3_3:68205918-68205937 Msa0467060:intron 50.0%
! TGCACTGGCAAGGTTTGTGT+GGG + chr3_3:68205919-68205938 Msa0467060:intron 50.0%
CAGTAAAGAAGCCGATCCTG+TGG - chr3_3:68205947-68205966 None:intergenic 50.0%
CAGTGAGAATCCCCTGTTAC+TGG - chr3_3:68206112-68206131 None:intergenic 50.0%
! CACTAGCTCTTGTGAGCTCT+AGG + chr3_3:68206203-68206222 Msa0467060:intron 50.0%
!! TAGCTCTTGTGAGCTCTAGG+CGG + chr3_3:68206206-68206225 Msa0467060:intron 50.0%
! TAGCAGCAGCATCTAGGATC+AGG + chr3_3:68206594-68206613 Msa0467060:intron 50.0%
! AAAAGAGCACGATCCAGCTG+TGG + chr3_3:68206845-68206864 Msa0467060:CDS 50.0%
!! TCCAGCTGTGGCTTTGTTCT+TGG + chr3_3:68206857-68206876 Msa0467060:CDS 50.0%
TCCAAGAACAAAGCCACAGC+TGG - chr3_3:68206861-68206880 None:intergenic 50.0%
AAGGTCCTAACAGAGTCACG+AGG - chr3_3:68207304-68207323 None:intergenic 50.0%
TCGTGACTCTGTTAGGACCT+TGG + chr3_3:68207303-68207322 Msa0467060:intron 50.0%
TATCCTTGAGAGGCCAAGCT+TGG + chr3_3:68207522-68207541 Msa0467060:intron 50.0%
!!! GTCTTTTTTCAGGCCATGGG+TGG + chr3_3:68208351-68208370 Msa0467060:intron 50.0%
AACGGCTCAGTAGTAGAGCA+TGG + chr3_3:68208494-68208513 Msa0467060:intron 50.0%
TGCCACACCATGTTTCACAC+TGG - chr3_3:68209117-68209136 None:intergenic 50.0%
ATTTCTCTCTTCGCCGGCGT+CGG - chr3_3:68202492-68202511 None:intergenic 55.0%
ACCCGCATTTCTCTCTTCGC+CGG - chr3_3:68202498-68202517 None:intergenic 55.0%
CGGTGCATGGTACACCGTTA+TGG + chr3_3:68202572-68202591 Msa0467060:CDS 55.0%
GGGCAAGAGTTAGACTGCCA+TGG + chr3_3:68204846-68204865 Msa0467060:intron 55.0%
ACTGCCATGGCATGGGTGAT+TGG + chr3_3:68204859-68204878 Msa0467060:intron 55.0%
CTGCCATGGCATGGGTGATT+GGG + chr3_3:68204860-68204879 Msa0467060:intron 55.0%
TGCCATGGCATGGGTGATTG+GGG + chr3_3:68204861-68204880 Msa0467060:intron 55.0%
TTCCCCAATCACCCATGCCA+TGG - chr3_3:68204866-68204885 None:intergenic 55.0%
CATGGTGGCAATGGTTGTGG+TGG - chr3_3:68205061-68205080 None:intergenic 55.0%
GGACATGGTGGCAATGGTTG+TGG - chr3_3:68205064-68205083 None:intergenic 55.0%
TGTCGTGGACATGGTGGCAA+TGG - chr3_3:68205070-68205089 None:intergenic 55.0%
TCTAATGGCTCAGGTGAGCG+TGG - chr3_3:68205106-68205125 None:intergenic 55.0%
GTGACATCCAGATGCGCACA+TGG + chr3_3:68205357-68205376 Msa0467060:intron 55.0%
TAGGACGTCGCGCGTAATTG+TGG + chr3_3:68205625-68205644 Msa0467060:intron 55.0%
! GCACTGGCAAGGTTTGTGTG+GGG + chr3_3:68205920-68205939 Msa0467060:intron 55.0%
CACTGGCAAGGTTTGTGTGG+GGG + chr3_3:68205921-68205940 Msa0467060:intron 55.0%
TTGGCCCATGTAACCAGGAC+AGG - chr3_3:68206770-68206789 None:intergenic 55.0%
ACGCGCCAAACGATCTGTTG+TGG + chr3_3:68207133-68207152 Msa0467060:CDS 55.0%
CGCGCCAAACGATCTGTTGT+GGG + chr3_3:68207134-68207153 Msa0467060:CDS 55.0%
GGCACCCACAACAGATCGTT+TGG - chr3_3:68207141-68207160 None:intergenic 55.0%
GAACCAAGCTTGGCCTCTCA+AGG - chr3_3:68207528-68207547 None:intergenic 55.0%
AGAGGCCAAGCTTGGTTCCT+AGG + chr3_3:68207530-68207549 Msa0467060:intron 55.0%
AGTCAGCCCTGACGAAAGCA+TGG + chr3_3:68207789-68207808 Msa0467060:intron 55.0%
GTGCAACATAATGGCACCCC+TGG - chr3_3:68207974-68207993 None:intergenic 55.0%
GGCGGATCCAGTGTGAAACA+TGG + chr3_3:68209107-68209126 Msa0467060:three_prime_UTR 55.0%
CGCCGGCGAAGAGAGAAATG+CGG + chr3_3:68202493-68202512 Msa0467060:CDS 60.0%
GCCGGCGAAGAGAGAAATGC+GGG + chr3_3:68202494-68202513 Msa0467060:CDS 60.0%
TCTGGCTGTCGTGGACATGG+TGG - chr3_3:68205076-68205095 None:intergenic 60.0%
CACTCTGGCTGTCGTGGACA+TGG - chr3_3:68205079-68205098 None:intergenic 60.0%
AATGGCTCAGGTGAGCGTGG+TGG - chr3_3:68205103-68205122 None:intergenic 60.0%
TTACGCGCGACGTCCTAGCT+TGG - chr3_3:68205622-68205641 None:intergenic 60.0%
TGGCAGAGCTCGCATCACTG+CGG + chr3_3:68205894-68205913 Msa0467060:intron 60.0%
CGCATCACTGCGGAATGCAC+TGG + chr3_3:68205904-68205923 Msa0467060:intron 60.0%
! CACTGCGGAATGCACTGGCA+AGG + chr3_3:68205909-68205928 Msa0467060:intron 60.0%
AAGGTTTGTGTGGGGGCCAC+AGG + chr3_3:68205928-68205947 Msa0467060:intron 60.0%
TTGTGTGGGGGCCACAGGAT+CGG + chr3_3:68205933-68205952 Msa0467060:intron 60.0%
GTGGGTGCCTGTTCTCCTGA+AGG + chr3_3:68207152-68207171 Msa0467060:CDS 60.0%
GCTTCTTGTGCAGCCGCACT+TGG - chr3_3:68208958-68208977 None:intergenic 60.0%
GGTGGTCACTCTGGCTGTCG+TGG - chr3_3:68205085-68205104 None:intergenic 65.0%
GGTGAGCGTGGTGGTCACTC+TGG - chr3_3:68205094-68205113 None:intergenic 65.0%
GTTTGGCGCGTCGTCTTCCC+TGG - chr3_3:68207124-68207143 None:intergenic 65.0%
GCGCGTCGTCTTCCCTGGAG+AGG - chr3_3:68207119-68207138 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 68202341 68209166 68202341 ID=Msa0467060;Name=Msa0467060
chr3_3 mRNA 68202341 68209166 68202341 ID=Msa0467060-mRNA-1;Parent=Msa0467060;Name=Msa0467060-mRNA-1;_AED=0.14;_eAED=0.14;_QI=85|1|1|1|1|1|6|154|427
chr3_3 exon 68202341 68202842 68202341 ID=Msa0467060-mRNA-1:exon:15767;Parent=Msa0467060-mRNA-1
chr3_3 exon 68206705 68206989 68206705 ID=Msa0467060-mRNA-1:exon:15768;Parent=Msa0467060-mRNA-1
chr3_3 exon 68207125 68207173 68207125 ID=Msa0467060-mRNA-1:exon:15769;Parent=Msa0467060-mRNA-1
chr3_3 exon 68207791 68208067 68207791 ID=Msa0467060-mRNA-1:exon:15770;Parent=Msa0467060-mRNA-1
chr3_3 exon 68208363 68208441 68208363 ID=Msa0467060-mRNA-1:exon:15771;Parent=Msa0467060-mRNA-1
chr3_3 exon 68208836 68209166 68208836 ID=Msa0467060-mRNA-1:exon:15772;Parent=Msa0467060-mRNA-1
chr3_3 five_prime_UTR 68202341 68202425 68202341 ID=Msa0467060-mRNA-1:five_prime_utr;Parent=Msa0467060-mRNA-1
chr3_3 CDS 68202426 68202842 68202426 ID=Msa0467060-mRNA-1:cds;Parent=Msa0467060-mRNA-1
chr3_3 CDS 68206705 68206989 68206705 ID=Msa0467060-mRNA-1:cds;Parent=Msa0467060-mRNA-1
chr3_3 CDS 68207125 68207173 68207125 ID=Msa0467060-mRNA-1:cds;Parent=Msa0467060-mRNA-1
chr3_3 CDS 68207791 68208067 68207791 ID=Msa0467060-mRNA-1:cds;Parent=Msa0467060-mRNA-1
chr3_3 CDS 68208363 68208441 68208363 ID=Msa0467060-mRNA-1:cds;Parent=Msa0467060-mRNA-1
chr3_3 CDS 68208836 68209012 68208836 ID=Msa0467060-mRNA-1:cds;Parent=Msa0467060-mRNA-1
chr3_3 three_prime_UTR 68209013 68209166 68209013 ID=Msa0467060-mRNA-1:three_prime_utr;Parent=Msa0467060-mRNA-1
Gene Sequence

>Msa0467060

ATGGCAGAGAAACAGAAAACGATACCGTCGAAACAAAACGACACCGTTTCATTCTTCGAAACTCCGACGCCGGCGAAGAGAGAAATGCGGGTAACCGTTCCTGAACAAAATCAAAATTACATCACGGAATTTCGAAACTACGAAGACGGTGCATGGTACACCGTTATGGTTACGTTGGAGGAAAAGGAAACACTTCGAGTAAGGTACGAAAAATTCACCGATGAAGAAGACAATATCTTCGAACCTTCTTTTTTCGAATCATTGGAAGAGCTTGTTGAGTTTGAGAAACGATTCAGACCTGTTTCCGTTCAAGTTCAGGATTATGAATGTCGGAAGCTTGTTAAGGGTGTTAGGGTTTGCGCTTCGCTGCGTTTCACACCTGATGATCTTCGCTTCTATGATGCTGTTGTTGATGCGGTGGATGAACGCAAGCATTCTCGCAAAAAAGACGCGGAGTGCTTGTGCTTGTGTACCTTTATCCTGTCCTGGTTACATGGGCCAAATGAAGGAAAGTTGACTGCTGCCGAAATTGGTGACATTTGCATTGTGCAGCCTATAAAAGAGCACGATCCAGCTGTGGCTTTGTTCTTGGAGATTACAAGGAGGAGACTAGAATCACAATCTGGACAGGAATTGGTTGTGATCTTCCACAAAGGAATAAAAACTAAAACCAAAATGGGATTTTTCGAAAGAATGCAAAAGGGAAGACGACGCGCCAAACGATCTGTTGTGGGTGCCTGTTCTCCTGAAGTCAGCCCTGACGAAAGCATGGAAGATAAAGAGTTGGAAGCTAAAAGAAATGTGTGTATGATTCTGATAGGGAATCTTGATAAAGAATTATGTCCATCAACAGCTGTAGAGTTCTTATACAAACATACTCAAGTATCAGCTAGTGTGTTCATTTTTCCAAGTTTATCATTGGAGATATATACCAGGGGTGCCATTATGTTGCACACTGAACAAGATTTCCAAAAGCTTTGTGACTTTTTGACAAATCCAAATTACATCATAACATCTTCAACTGGCAGGCCATGGGTGGTAATTGAAAAACAAGTAGGTCTCAAAAATATCAAAGCATCAATAGGAACACTGTTTCCTAAATCTGAGAATGCATCACAGGATGGAAACAATAGAAGGAGTAGCAATTTGAAGGTTGTACATTCAGGAACTCAAGAATTCAAGATTGCCAGTGCTAAGAGGGATTTGTTTTCGGAATTTGCTGATCACCAAGTGCGGCTGCACAAGAAGCTTGCATTTCTGGAAGCAAGTATTCATGAAATCTGA

Protein sequence

>Msa0467060

MAEKQKTIPSKQNDTVSFFETPTPAKREMRVTVPEQNQNYITEFRNYEDGAWYTVMVTLEEKETLRVRYEKFTDEEDNIFEPSFFESLEELVEFEKRFRPVSVQVQDYECRKLVKGVRVCASLRFTPDDLRFYDAVVDAVDERKHSRKKDAECLCLCTFILSWLHGPNEGKLTAAEIGDICIVQPIKEHDPAVALFLEITRRRLESQSGQELVVIFHKGIKTKTKMGFFERMQKGRRRAKRSVVGACSPEVSPDESMEDKELEAKRNVCMILIGNLDKELCPSTAVEFLYKHTQVSASVFIFPSLSLEIYTRGAIMLHTEQDFQKLCDFLTNPNYIITSSTGRPWVVIEKQVGLKNIKASIGTLFPKSENASQDGNNRRSSNLKVVHSGTQEFKIASAKRDLFSEFADHQVRLHKKLAFLEASIHEI*