AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0611450

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0611450 MtrunA17_Chr4g0044851 98.089 471 9 0 1 471 1 471 0.0 954
Msa0611450 MtrunA17_Chr4g0044841 84.501 471 69 2 3 469 1 471 0.0 802
Msa0611450 MtrunA17_Chr1g0153371 67.382 466 145 4 6 469 8 468 0.0 655
Msa0611450 MtrunA17_Chr8g0369791 54.968 473 204 5 1 471 1 466 0.0 537
Msa0611450 MtrunA17_Chr5g0408181 55.365 466 188 7 5 468 14 461 0.0 535
Msa0611450 MtrunA17_Chr1g0164371 55.292 463 197 4 5 466 19 472 1.23e-173 496
Msa0611450 MtrunA17_Chr2g0293421 33.183 443 280 8 37 466 45 484 2.55e-80 257
Msa0611450 MtrunA17_Chr2g0293411 32.809 445 282 7 37 466 41 483 5.20e-78 251
Msa0611450 MtrunA17_Chr8g0341951 33.111 450 287 7 3 442 1 446 1.12e-77 250
Msa0611450 MtrunA17_Chr3g0089361 32.960 446 281 10 36 470 39 477 2.57e-77 249
Msa0611450 MtrunA17_Chr6g0455461 31.501 473 302 11 2 467 4 461 5.07e-77 248
Msa0611450 MtrunA17_Chr3g0078411 30.867 473 305 11 2 467 4 461 1.23e-76 247
Msa0611450 MtrunA17_Chr8g0388921 29.979 477 310 9 6 468 9 475 2.38e-74 241
Msa0611450 MtrunA17_Chr3g0141801 30.947 475 310 9 10 471 16 485 1.68e-72 237
Msa0611450 MtrunA17_Chr8g0381541 33.570 423 266 7 37 445 43 464 4.25e-72 236
Msa0611450 MtrunA17_Chr3g0113321 32.160 426 264 9 33 442 25 441 1.02e-71 235
Msa0611450 MtrunA17_Chr3g0107501 30.769 442 293 4 37 466 33 473 1.08e-71 234
Msa0611450 MtrunA17_Chr8g0381571 33.652 419 263 7 37 441 43 460 1.15e-71 234
Msa0611450 MtrunA17_Chr7g0219961 29.540 457 306 8 13 466 16 459 3.58e-71 233
Msa0611450 MtrunA17_Chr5g0443401 30.689 479 313 8 1 466 1 473 3.66e-71 233
Msa0611450 MtrunA17_Chr3g0107511 30.462 476 314 6 1 464 1 471 3.74e-71 233
Msa0611450 MtrunA17_Chr5g0400421 31.481 486 304 13 10 470 9 490 4.82e-71 233
Msa0611450 MtrunA17_Chr5g0397971 31.265 419 277 6 36 445 30 446 1.07e-70 232
Msa0611450 MtrunA17_Chr7g0226771 30.989 455 300 8 6 453 7 454 2.03e-70 231
Msa0611450 MtrunA17_Chr5g0403931 31.933 476 293 11 13 466 10 476 2.30e-69 228
Msa0611450 MtrunA17_Chr5g0443731 31.207 439 289 6 36 463 28 464 6.15e-69 227
Msa0611450 MtrunA17_Chr3g0089351 30.846 402 268 8 72 470 1 395 7.93e-67 219
Msa0611450 MtrunA17_Chr8g0372711 29.724 471 316 6 2 464 16 479 1.07e-66 222
Msa0611450 MtrunA17_Chr5g0400411 31.884 483 305 11 10 470 9 489 1.92e-66 221
Msa0611450 MtrunA17_Chr8g0372411 31.050 438 286 8 38 464 40 472 1.54e-65 218
Msa0611450 MtrunA17_Chr8g0380471 30.105 475 306 11 6 467 12 473 2.69e-65 218
Msa0611450 MtrunA17_Chr8g0339861 31.973 441 278 12 37 462 45 478 3.85e-64 215
Msa0611450 MtrunA17_Chr8g0380931 30.128 468 285 10 26 467 51 502 7.40e-63 212
Msa0611450 MtrunA17_Chr8g0373441 30.947 433 264 11 13 429 10 423 3.01e-60 203
Msa0611450 MtrunA17_Chr6g0478161 30.501 459 282 12 5 443 23 464 9.60e-58 198
Msa0611450 MtrunA17_Chr1g0161671 28.767 292 195 5 37 316 29 319 1.03e-35 134
Msa0611450 MtrunA17_Chr8g0381551 29.897 291 190 6 37 314 43 332 1.53e-35 134
Msa0611450 MtrunA17_Chr4g0000161 30.368 326 199 10 10 312 6 326 1.97e-32 126
Msa0611450 MtrunA17_Chr5g0404861 43.357 143 76 2 327 466 15 155 7.76e-32 119
Msa0611450 MtrunA17_Chr6g0463551 32.402 179 113 2 195 366 12 189 2.78e-30 116
Msa0611450 MtrunA17_Chr4g0013471 27.541 305 194 8 37 328 43 333 4.16e-29 118
Msa0611450 MtrunA17_Chr4g0000171 28.767 292 186 8 37 313 43 327 9.75e-29 115
Msa0611450 MtrunA17_Chr5g0405001 24.375 480 307 12 3 444 20 481 7.25e-26 110
Msa0611450 MtrunA17_Chr8g0381561 47.115 104 54 1 339 441 8 111 2.27e-25 100
Msa0611450 MtrunA17_Chr5g0436981 38.272 162 86 5 36 187 27 184 2.21e-24 100
Msa0611450 MtrunA17_Chr1g0162811 25.053 471 311 16 5 444 9 468 4.59e-24 105
Msa0611450 MtrunA17_Chr3g0101751 23.967 484 315 14 1 444 6 476 6.31e-24 104
Msa0611450 MtrunA17_Chr4g0000151 38.281 128 77 2 333 459 5 131 7.98e-24 97.1
Msa0611450 MtrunA17_Chr8g0334891 24.449 454 288 16 33 457 34 461 8.19e-24 103
Msa0611450 MtrunA17_Chr5g0403321 25.110 454 283 16 36 444 33 474 1.66e-23 103
Msa0611450 MtrunA17_Chr3g0101691 25.052 479 300 17 9 444 11 473 1.86e-23 103
Msa0611450 MtrunA17_Chr5g0404881 30.131 229 152 4 3 225 1 227 1.95e-23 98.6
Msa0611450 MtrunA17_Chr1g0160851 25.052 483 297 17 10 446 4 467 2.10e-23 102
Msa0611450 MtrunA17_Chr1g0174481 23.690 477 316 15 7 446 7 472 2.85e-23 102
Msa0611450 MtrunA17_Chr7g0235261 26.047 430 255 19 66 455 85 491 3.22e-23 102
Msa0611450 MtrunA17_Chr4g0004601 25.672 409 249 15 83 455 123 512 3.50e-23 102
Msa0611450 MtrunA17_Chr3g0089291 26.522 230 161 7 72 298 1 225 8.14e-23 97.1
Msa0611450 MtrunA17_Chr3g0101661 24.174 484 305 17 7 446 9 474 1.69e-22 100
Msa0611450 MtrunA17_Chr5g0437001 41.667 108 59 1 334 437 1 108 1.75e-22 94.0
Msa0611450 MtrunA17_Chr1g0176831 23.960 505 327 15 2 470 33 516 1.89e-22 100
Msa0611450 MtrunA17_Chr3g0101711 23.319 476 315 15 7 444 9 472 2.37e-22 99.8
Msa0611450 MtrunA17_Chr3g0101671 24.583 480 307 18 6 444 8 473 3.22e-22 99.4
Msa0611450 MtrunA17_Chr2g0314731 22.817 504 337 12 1 470 1 486 4.87e-22 98.6
Msa0611450 MtrunA17_Chr5g0445421 23.707 464 302 15 7 444 84 521 6.21e-22 99.0
Msa0611450 MtrunA17_Chr6g0463801 23.454 469 302 12 22 453 23 471 1.39e-21 97.4
Msa0611450 MtrunA17_Chr1g0174451 22.614 482 327 14 3 446 5 478 4.01e-21 96.3
Msa0611450 MtrunA17_Chr6g0463541 38.235 102 63 0 364 465 4 105 8.36e-21 87.4
Msa0611450 MtrunA17_Chr3g0101801 23.062 503 328 17 1 461 5 490 8.56e-21 95.1
Msa0611450 MtrunA17_Chr5g0445381 24.000 475 316 17 2 444 38 499 9.12e-21 95.1
Msa0611450 MtrunA17_Chr5g0445451 24.573 468 314 16 7 444 10 468 1.24e-20 94.7
Msa0611450 MtrunA17_Chr4g0035921 23.747 459 283 15 38 444 38 481 1.24e-20 94.7
Msa0611450 MtrunA17_Chr7g0258221 23.849 478 317 13 7 446 8 476 1.25e-20 94.7
Msa0611450 MtrunA17_Chr3g0101701 24.738 477 308 17 9 446 11 475 1.26e-20 94.7
Msa0611450 MtrunA17_Chr8g0334941 28.235 255 157 7 216 457 65 306 1.64e-20 92.4
Msa0611450 MtrunA17_Chr5g0395331 24.843 479 299 17 11 444 10 472 2.35e-20 93.6
Msa0611450 MtrunA17_Chr7g0218611 24.053 449 285 12 38 444 34 468 2.90e-20 93.6
Msa0611450 MtrunA17_Chr8g0372251 22.717 449 294 11 38 444 36 473 3.15e-20 93.2
Msa0611450 MtrunA17_Chr8g0362731 26.385 379 236 16 97 444 15 381 3.89e-20 92.4
Msa0611450 MtrunA17_Chr1g0205371 25.732 478 311 16 3 446 1 468 3.90e-20 93.2
Msa0611450 MtrunA17_Chr3g0101631 23.188 483 311 13 3 444 1 464 4.20e-20 92.8
Msa0611450 MtrunA17_Chr3g0116741 23.992 496 305 15 4 452 21 491 4.93e-20 92.8
Msa0611450 MtrunA17_Chr7g0265611 22.637 455 302 13 31 444 40 485 5.17e-20 92.8
Msa0611450 MtrunA17_Chr2g0314721 24.167 480 315 12 18 459 23 491 5.26e-20 92.8
Msa0611450 MtrunA17_Chr5g0395321 23.729 472 319 15 2 444 6 465 5.99e-20 92.8
Msa0611450 MtrunA17_Chr3g0084921 23.918 485 319 16 9 451 10 486 6.09e-20 92.4
Msa0611450 MtrunA17_Chr4g0011901 24.190 463 289 14 26 444 20 464 6.17e-20 92.4
Msa0611450 MtrunA17_Chr1g0205361 25.466 483 290 16 11 446 8 467 6.82e-20 92.4
Msa0611450 MtrunA17_Chr4g0011981 24.123 456 298 12 26 444 20 464 7.08e-20 92.4
Msa0611450 MtrunA17_Chr8g0361471 24.211 475 314 17 6 444 5 469 8.83e-20 92.0
Msa0611450 MtrunA17_Chr8g0356001 24.947 469 296 16 19 444 19 474 9.39e-20 92.0
Msa0611450 MtrunA17_Chr2g0310381 21.967 478 318 14 5 444 1 461 1.18e-19 91.7
Msa0611450 MtrunA17_Chr4g0058231 24.544 493 300 20 10 449 1 474 1.30e-19 91.3
Msa0611450 MtrunA17_Chr3g0101821 23.092 498 335 20 6 466 3 489 1.30e-19 91.7
Msa0611450 MtrunA17_Chr4g0057001 24.070 457 286 14 33 444 44 484 1.83e-19 91.3
Msa0611450 MtrunA17_Chr7g0215181 26.667 315 204 11 149 444 176 482 2.04e-19 90.9
Msa0611450 MtrunA17_Chr8g0390881 22.385 478 320 16 5 444 8 472 2.09e-19 90.9
Msa0611450 MtrunA17_Chr8g0364651 23.353 501 300 18 10 454 6 478 2.43e-19 90.5
Msa0611450 MtrunA17_Chr1g0162801 23.591 479 311 16 6 444 8 471 2.59e-19 90.5
Msa0611450 MtrunA17_Chr8g0339331 25.216 464 297 17 24 444 28 484 2.85e-19 90.5
Msa0611450 MtrunA17_Chr6g0465511 24.375 480 307 19 6 444 5 469 3.59e-19 90.1
Msa0611450 MtrunA17_Chr6g0466331 24.421 475 313 18 6 444 5 469 4.04e-19 90.1
Msa0611450 MtrunA17_Chr3g0101611 23.991 446 293 13 36 445 37 472 4.37e-19 89.7
Msa0611450 MtrunA17_Chr1g0160861 28.384 229 146 6 230 446 86 308 4.52e-19 88.2
Msa0611450 MtrunA17_Chr6g0484811 22.996 474 317 17 8 444 11 473 4.64e-19 89.7
Msa0611450 MtrunA17_Chr7g0262111 26.933 401 256 15 69 444 90 478 5.95e-19 89.4
Msa0611450 MtrunA17_Chr2g0296651 24.268 478 300 14 8 446 9 463 6.77e-19 89.4
Msa0611450 MtrunA17_Chr1g0167321 24.431 483 309 14 3 444 1 468 7.58e-19 89.0
Msa0611450 MtrunA17_Chr5g0403351 24.528 477 308 19 6 444 9 471 8.63e-19 89.0
Msa0611450 MtrunA17_Chr6g0463561 30.625 160 100 2 7 161 14 167 9.16e-19 84.3
Msa0611450 MtrunA17_Chr7g0235551 23.909 481 311 17 7 444 8 476 1.06e-18 88.6
Msa0611450 MtrunA17_Chr8g0382901 22.414 464 312 13 5 444 4 443 1.08e-18 89.4
Msa0611450 MtrunA17_Chr5g0430031 22.199 473 321 14 6 444 13 472 1.13e-18 88.6
Msa0611450 MtrunA17_Chr5g0401681 21.237 485 316 13 2 446 5 463 1.35e-18 88.2
Msa0611450 MtrunA17_Chr3g0089381 31.056 161 107 2 208 366 34 192 2.80e-18 83.6
Msa0611450 MtrunA17_Chr4g0063221 22.727 440 298 14 61 467 86 516 3.21e-18 87.4
Msa0611450 MtrunA17_Chr0c19g0493771 26.906 223 140 6 239 445 406 621 4.31e-18 87.4
Msa0611450 MtrunA17_Chr6g0484841 23.251 443 300 15 36 444 36 472 4.40e-18 86.7
Msa0611450 MtrunA17_Chr8g0377341 22.831 438 291 14 40 442 70 495 5.85e-18 86.7
Msa0611450 MtrunA17_Chr3g0101601 23.789 475 319 14 3 444 1 465 6.31e-18 86.3
Msa0611450 MtrunA17_Chr5g0446161 23.555 467 320 14 7 444 10 468 6.66e-18 86.3
Msa0611450 MtrunA17_Chr1g0161651 25.532 282 157 6 37 267 43 322 7.00e-18 84.7
Msa0611450 MtrunA17_Chr5g0445461 22.930 471 318 17 7 444 10 468 7.42e-18 85.9
Msa0611450 MtrunA17_Chr2g0286091 23.400 453 291 15 23 438 32 465 7.60e-18 86.3
Msa0611450 MtrunA17_Chr3g0128461 28.889 225 142 7 231 444 280 497 1.31e-17 85.5
Msa0611450 MtrunA17_Chr6g0458561 23.505 485 315 20 3 444 26 497 1.61e-17 85.1
Msa0611450 MtrunA17_Chr4g0046321 23.832 428 272 14 67 451 65 481 1.72e-17 85.1
Msa0611450 MtrunA17_Chr7g0224551 23.279 494 317 15 3 451 1 477 1.79e-17 85.1
Msa0611450 MtrunA17_Chr5g0446151 22.727 440 297 13 37 444 41 469 1.83e-17 84.7
Msa0611450 MtrunA17_Chr1g0179811 22.897 428 265 15 69 449 108 517 2.11e-17 84.7
Msa0611450 MtrunA17_Chr3g0101761 22.574 474 325 17 6 444 3 469 2.12e-17 84.7
Msa0611450 MtrunA17_Chr5g0406651 23.555 467 301 13 20 444 13 465 2.55e-17 84.3
Msa0611450 MtrunA17_Chr7g0224561 23.279 494 317 15 3 451 1 477 2.75e-17 84.3
Msa0611450 MtrunA17_Chr4g0053621 21.525 446 303 15 37 445 31 466 3.22e-17 84.0
Msa0611450 MtrunA17_Chr4g0024771 21.581 468 324 16 11 444 10 468 3.70e-17 84.0
Msa0611450 MtrunA17_Chr4g0039901 23.620 453 283 16 36 444 34 467 3.97e-17 84.0
Msa0611450 MtrunA17_Chr3g0101651 23.382 479 312 16 9 446 11 475 4.45e-17 83.6
Msa0611450 MtrunA17_Chr1g0174471 22.981 483 317 16 7 446 23 493 5.13e-17 83.6
Msa0611450 MtrunA17_Chr5g0431501 22.198 455 290 15 37 444 33 470 5.98e-17 83.2
Msa0611450 MtrunA17_Chr5g0431461 22.198 455 290 15 37 444 33 470 5.98e-17 83.2
Msa0611450 MtrunA17_Chr8g0370651 22.736 497 325 17 7 454 17 503 7.45e-17 83.2
Msa0611450 MtrunA17_Chr8g0357421 24.416 471 315 18 6 444 8 469 7.84e-17 82.8
Msa0611450 MtrunA17_Chr8g0387101 25.057 439 285 15 61 458 58 493 9.05e-17 82.8
Msa0611450 MtrunA17_Chr1g0203141 23.272 434 293 12 61 464 86 509 9.28e-17 82.8
Msa0611450 MtrunA17_Chr3g0101571 21.973 446 298 14 36 444 35 467 9.90e-17 82.4
Msa0611450 MtrunA17_Chr1g0193811 22.917 432 284 15 69 464 92 510 1.13e-16 82.4
Msa0611450 MtrunA17_Chr6g0457421 28.511 235 153 7 219 444 252 480 1.35e-16 82.0
Msa0611450 MtrunA17_Chr8g0357431 22.479 476 329 14 3 444 1 470 1.74e-16 82.0
Msa0611450 MtrunA17_Chr3g0135841 22.152 474 283 15 39 440 44 503 1.75e-16 82.0
Msa0611450 MtrunA17_Chr7g0218601 23.820 445 291 10 37 444 34 467 2.00e-16 81.6
Msa0611450 MtrunA17_Chr5g0431511 23.011 465 309 16 37 464 33 485 2.69e-16 81.3
Msa0611450 MtrunA17_Chr3g0101731 22.594 478 320 16 5 444 4 469 3.55e-16 80.9
Msa0611450 MtrunA17_Chr3g0101811 21.815 518 329 20 9 466 3 504 3.87e-16 80.9
Msa0611450 MtrunA17_Chr2g0280261 22.022 445 290 11 37 442 34 460 5.30e-16 80.5
Msa0611450 MtrunA17_Chr6g0451681 21.957 460 286 15 2 440 31 438 6.09e-16 80.1
Msa0611450 MtrunA17_Chr1g0161641 42.105 76 43 1 367 441 13 88 6.49e-16 72.8
Msa0611450 MtrunA17_Chr7g0255531 23.975 488 297 18 3 442 1 462 6.68e-16 80.1
Msa0611450 MtrunA17_Chr3g0101721 23.427 461 305 17 37 461 37 485 9.04e-16 79.7
Msa0611450 MtrunA17_Chr3g0101831 23.307 502 327 19 9 466 3 490 1.01e-15 79.3
Msa0611450 MtrunA17_Chr4g0056951 20.930 430 297 13 52 444 56 479 1.02e-15 79.3
Msa0611450 MtrunA17_Chr5g0430101 21.519 474 321 17 6 444 12 469 1.24e-15 79.3
Msa0611450 MtrunA17_Chr3g0101581 22.807 456 284 17 36 444 36 470 1.27e-15 79.3
Msa0611450 MtrunA17_Chr7g0258211 23.707 232 153 4 235 446 255 482 1.41e-15 79.0
Msa0611450 MtrunA17_Chr5g0419691 23.714 447 289 12 38 444 30 464 1.66e-15 79.0
Msa0611450 MtrunA17_Chr5g0396521 25.769 260 151 8 227 452 299 550 1.97e-15 79.0
Msa0611450 MtrunA17_Chr5g0431671 22.273 440 302 15 37 444 38 469 2.19e-15 78.6
Msa0611450 MtrunA17_Chr1g0200961 22.422 446 298 13 38 444 29 465 2.64e-15 78.2
Msa0611450 MtrunA17_Chr4g0030711 22.989 435 285 11 62 451 61 490 2.90e-15 78.2
Msa0611450 MtrunA17_Chr5g0430081 21.712 479 331 15 1 444 1 470 3.33e-15 77.8
Msa0611450 MtrunA17_Chr4g0011921 24.536 485 294 15 8 444 4 464 4.59e-15 77.4
Msa0611450 MtrunA17_Chr5g0413911 25.103 486 284 19 25 445 30 500 5.63e-15 77.4
Msa0611450 MtrunA17_Chr4g0047641 22.904 489 305 17 7 444 17 484 5.66e-15 77.0
Msa0611450 MtrunA17_Chr1g0207841 23.684 418 261 15 71 451 93 489 7.33e-15 77.0
Msa0611450 MtrunA17_Chr8g0370641 21.660 494 330 16 7 454 17 499 8.66e-15 76.6
Msa0611450 MtrunA17_Chr4g0052881 23.188 207 154 2 238 443 259 461 1.23e-14 76.3
Msa0611450 MtrunA17_Chr4g0017411 26.168 214 149 3 231 443 243 448 1.30e-14 75.9
Msa0611450 MtrunA17_Chr4g0011871 23.214 448 291 11 38 444 30 465 1.60e-14 75.9
Msa0611450 MtrunA17_Chr1g0197871 23.950 476 315 19 3 444 1 463 1.62e-14 75.5
Msa0611450 MtrunA17_Chr5g0431641 21.609 435 310 12 37 444 38 468 1.85e-14 75.5
Msa0611450 MtrunA17_Chr5g0400391 39.535 86 51 1 385 469 2 87 2.17e-14 69.3
Msa0611450 MtrunA17_Chr4g0052851 26.636 214 148 3 231 443 246 451 2.59e-14 75.1
Msa0611450 MtrunA17_Chr4g0052861 22.535 213 160 2 235 446 255 463 2.61e-14 75.1
Msa0611450 MtrunA17_Chr5g0401691 23.500 200 146 3 252 448 287 482 3.88e-14 74.7
Msa0611450 MtrunA17_Chr5g0403331 22.407 482 320 18 3 444 5 472 4.19e-14 74.3
Msa0611450 MtrunA17_Chr5g0395381 28.000 200 132 5 251 444 247 440 5.92e-14 73.9
Msa0611450 MtrunA17_Chr8g0362481 22.113 407 269 13 81 446 9 408 7.24e-14 73.6
Msa0611450 MtrunA17_Chr2g0296661 24.870 193 140 2 252 443 277 465 1.25e-13 72.8
Msa0611450 MtrunA17_Chr5g0430131 21.901 484 325 18 1 444 1 471 1.54e-13 72.8
Msa0611450 MtrunA17_Chr8g0364631 24.503 453 287 18 37 443 32 475 1.59e-13 72.8
Msa0611450 MtrunA17_Chr2g0280011 31.073 177 107 4 280 444 9 182 1.86e-13 69.3
Msa0611450 MtrunA17_Chr5g0409051 25.389 193 130 3 262 444 291 479 4.23e-13 71.2
Msa0611450 MtrunA17_Chr5g0430091 22.222 477 316 16 6 444 13 472 6.66e-13 70.9
Msa0611450 MtrunA17_Chr1g0213671 23.841 453 287 15 36 442 33 473 6.69e-13 70.9
Msa0611450 MtrunA17_Chr5g0419451 23.230 452 297 18 26 442 50 486 1.12e-12 70.1
Msa0611450 MtrunA17_Chr6g0479681 22.594 478 316 17 35 464 52 523 2.34e-12 68.9
Msa0611450 MtrunA17_Chr2g0288661 22.222 441 268 13 45 444 85 491 3.35e-12 68.6
Msa0611450 MtrunA17_Chr2g0280061 32.222 180 101 6 280 444 9 182 4.58e-12 65.5
Msa0611450 MtrunA17_Chr7g0246221 25.726 241 155 7 219 445 242 472 5.38e-12 67.8
Msa0611450 MtrunA17_Chr4g0058191 26.943 193 130 4 269 454 280 468 5.71e-12 67.8
Msa0611450 MtrunA17_Chr3g0101741 25.000 196 140 4 250 442 198 389 6.50e-12 67.4
Msa0611450 MtrunA17_Chr4g0026941 28.235 255 154 9 231 468 295 537 1.15e-11 67.0
Msa0611450 MtrunA17_Chr2g0280041 22.738 431 274 15 61 444 88 506 1.24e-11 66.6
Msa0611450 MtrunA17_Chr7g0246181 25.726 241 163 7 217 445 235 471 2.38e-11 65.9
Msa0611450 MtrunA17_Chr8g0354531 24.250 400 252 14 81 444 234 618 3.85e-11 65.5
Msa0611450 MtrunA17_Chr8g0373431 48.333 60 30 1 407 466 4 62 3.93e-11 58.9
Msa0611450 MtrunA17_Chr7g0246151 25.225 222 151 7 234 445 255 471 7.96e-11 64.3
Msa0611450 MtrunA17_Chr1g0184461 26.374 182 115 4 272 441 298 472 9.02e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0611450 AT3G19270.2 69.397 464 133 2 6 469 11 465 0.0 682
Msa0611450 AT3G19270.1 69.108 437 126 2 6 442 11 438 0.0 642
Msa0611450 AT4G19230.1 57.569 469 189 5 3 469 1 461 0.0 576
Msa0611450 AT5G45340.1 57.050 461 184 6 9 469 15 461 0.0 558
Msa0611450 AT4G19230.2 56.494 462 184 7 3 457 1 452 0.0 545
Msa0611450 AT5G45340.2 57.275 433 171 6 9 441 15 433 0.0 525
Msa0611450 AT2G29090.2 56.481 432 186 2 36 466 48 478 1.21e-179 512
Msa0611450 AT2G29090.1 56.481 432 186 2 36 466 48 478 1.21e-179 512
Msa0611450 AT2G29090.3 54.688 384 172 2 84 466 1 383 1.92e-149 431
Msa0611450 AT2G29090.4 52.555 274 128 2 36 308 48 320 5.30e-95 291
Msa0611450 AT1G05160.2 34.607 445 273 9 37 466 45 486 2.52e-85 271
Msa0611450 AT1G05160.1 34.607 445 273 9 37 466 45 486 2.52e-85 271
Msa0611450 AT2G32440.2 35.570 447 270 10 37 469 44 486 1.05e-83 266
Msa0611450 AT2G32440.1 35.570 447 270 10 37 469 44 486 1.05e-83 266
Msa0611450 AT3G30180.1 32.374 417 275 6 33 446 30 442 4.16e-74 241
Msa0611450 AT5G05690.1 34.163 442 267 9 37 464 31 462 1.09e-73 240
Msa0611450 AT1G19630.1 31.933 476 306 11 7 469 4 474 2.08e-73 239
Msa0611450 AT5G36110.1 32.743 452 273 11 35 466 32 472 1.46e-72 237
Msa0611450 AT5G38970.1 29.844 449 301 7 1 446 5 442 3.20e-72 236
Msa0611450 AT1G19630.3 31.696 448 289 10 7 442 4 446 1.95e-68 226
Msa0611450 AT3G13730.1 32.644 435 273 8 24 442 35 465 4.85e-68 226
Msa0611450 AT3G50660.1 30.435 483 278 10 37 470 39 512 1.44e-67 225
Msa0611450 AT1G12740.1 30.588 425 278 5 33 445 27 446 1.98e-67 223
Msa0611450 AT3G13730.2 32.488 434 273 8 24 441 35 464 8.03e-67 222
Msa0611450 AT1G12740.2 30.394 431 277 6 33 445 27 452 1.94e-65 218
Msa0611450 AT1G12740.4 30.162 431 278 6 33 445 27 452 5.57e-65 217
Msa0611450 AT4G36380.1 31.265 419 274 6 37 442 69 486 4.79e-64 216
Msa0611450 AT2G42850.1 31.293 441 286 8 37 466 45 479 1.07e-61 209
Msa0611450 AT5G38970.3 29.383 405 274 6 1 404 5 398 1.15e-61 207
Msa0611450 AT5G05690.2 34.133 375 228 7 37 401 31 396 2.62e-61 206
Msa0611450 AT1G55940.1 30.536 429 265 13 36 440 44 463 4.04e-56 194
Msa0611450 AT1G55940.2 29.954 434 271 13 36 445 44 468 8.82e-56 194
Msa0611450 AT1G19630.2 30.958 407 264 10 7 401 4 405 1.46e-55 191
Msa0611450 AT5G48000.2 30.090 442 295 9 36 466 34 472 1.90e-55 192
Msa0611450 AT5G48000.4 30.090 442 295 9 36 466 34 472 1.90e-55 192
Msa0611450 AT5G48000.7 30.090 442 295 9 36 466 34 472 1.90e-55 192
Msa0611450 AT5G48000.6 30.090 442 295 9 36 466 34 472 1.90e-55 192
Msa0611450 AT5G48000.5 30.090 442 295 9 36 466 34 472 1.90e-55 192
Msa0611450 AT5G48000.3 30.090 442 295 9 36 466 34 472 1.90e-55 192
Msa0611450 AT1G73340.1 29.302 430 269 9 33 442 39 453 3.94e-55 191
Msa0611450 AT5G48000.1 30.090 442 295 9 36 466 75 513 5.87e-55 192
Msa0611450 AT5G14400.2 29.018 448 266 13 42 467 1 418 3.28e-54 187
Msa0611450 AT5G14400.3 29.426 418 249 11 42 442 1 389 2.73e-52 181
Msa0611450 AT5G38970.2 28.763 372 256 6 89 457 4 369 1.17e-51 179
Msa0611450 AT5G38970.4 28.763 372 256 6 89 457 4 369 1.17e-51 179
Msa0611450 AT3G50660.2 29.353 402 238 9 37 401 39 431 1.85e-51 181
Msa0611450 AT1G78490.1 29.630 432 290 9 36 456 34 462 3.40e-51 181
Msa0611450 AT3G44970.1 28.066 424 284 7 36 444 34 451 3.19e-50 178
Msa0611450 AT5G05690.3 31.818 352 220 8 123 464 2 343 1.29e-47 168
Msa0611450 AT1G65670.1 29.147 422 272 9 36 444 34 441 8.73e-46 166
Msa0611450 AT4G15300.3 27.488 422 283 9 36 444 24 435 1.34e-45 165
Msa0611450 AT4G15300.2 27.488 422 283 9 36 444 34 445 1.52e-45 165
Msa0611450 AT4G15393.2 28.979 421 277 12 36 444 34 444 2.31e-45 165
Msa0611450 AT4G15396.1 27.619 420 286 10 36 444 34 446 4.63e-45 164
Msa0611450 AT4G15396.3 27.512 418 285 10 36 442 34 444 1.02e-43 160
Msa0611450 AT1G12740.3 27.246 345 237 4 33 368 27 366 8.61e-43 155
Msa0611450 AT5G36110.2 30.000 360 221 10 35 375 32 379 2.92e-42 154
Msa0611450 AT5G14400.1 28.499 393 233 12 93 467 2 364 1.15e-41 152
Msa0611450 AT1G78490.2 28.075 374 259 7 36 401 34 405 6.19e-40 149
Msa0611450 AT4G15300.1 26.126 444 283 11 36 444 24 457 1.60e-39 149
Msa0611450 AT4G15310.1 28.571 427 280 11 33 444 32 448 4.99e-39 147
Msa0611450 AT4G36380.2 28.024 339 234 5 37 366 69 406 1.73e-37 142
Msa0611450 AT4G15396.2 26.066 422 269 11 36 444 34 425 1.94e-37 142
Msa0611450 AT2G42850.2 29.427 384 247 10 9 375 12 388 3.27e-35 135
Msa0611450 AT4G15393.1 27.807 374 253 10 36 401 34 398 1.02e-34 134
Msa0611450 AT4G15396.4 26.005 373 263 8 36 401 34 400 4.01e-34 132
Msa0611450 AT5G14400.4 27.566 341 220 9 42 366 1 330 7.02e-34 130
Msa0611450 AT5G36130.1 44.444 135 73 2 334 466 1 135 7.93e-32 119
Msa0611450 AT5G36140.1 28.866 291 184 9 35 309 31 314 6.44e-30 119
Msa0611450 AT3G30290.1 24.603 378 272 8 73 444 5 375 1.55e-28 117
Msa0611450 AT4G13770.1 25.000 476 314 14 3 444 1 467 3.14e-25 108
Msa0611450 AT4G15393.3 25.469 373 230 10 36 401 34 365 2.72e-23 101
Msa0611450 AT1G11680.1 23.992 471 313 15 11 457 14 463 4.50e-22 99.4
Msa0611450 AT5G04330.1 24.009 454 303 13 28 444 24 472 1.10e-21 98.2
Msa0611450 AT5G57220.1 23.640 478 307 15 3 445 1 455 1.45e-21 97.8
Msa0611450 AT3G44970.2 23.193 332 237 6 36 355 34 359 3.61e-21 95.5
Msa0611450 AT2G45560.1 23.918 485 316 17 3 444 1 475 3.72e-21 96.7
Msa0611450 AT2G26710.1 23.303 442 294 13 61 470 87 515 5.25e-21 96.3
Msa0611450 AT4G37370.1 25.000 220 160 2 230 448 247 462 5.60e-21 95.9
Msa0611450 AT3G28740.1 25.806 217 156 2 230 445 256 468 7.09e-21 95.9
Msa0611450 AT4G37320.1 22.199 482 320 16 3 448 1 463 1.15e-20 95.1
Msa0611450 AT4G37400.1 27.347 245 161 5 215 449 228 465 1.58e-20 94.7
Msa0611450 AT3G20940.1 23.608 449 304 14 33 446 38 482 2.46e-20 94.4
Msa0611450 AT4G37430.1 22.453 481 310 18 7 445 5 464 4.29e-20 93.2
Msa0611450 AT5G25120.1 25.210 476 298 17 7 444 6 461 5.85e-20 92.8
Msa0611450 AT2G23190.1 24.771 218 159 2 230 446 292 505 1.28e-19 92.0
Msa0611450 AT5G25140.1 24.211 475 305 16 6 444 6 461 1.77e-19 91.3
Msa0611450 AT4G31500.1 24.895 478 311 17 3 444 1 466 2.48e-19 90.9
Msa0611450 AT2G42250.1 24.286 490 322 14 3 448 1 485 4.28e-19 90.5
Msa0611450 AT5G06905.1 22.151 465 313 12 33 452 27 487 4.71e-19 90.1
Msa0611450 AT5G52400.1 26.147 436 273 16 62 464 94 513 1.06e-18 89.4
Msa0611450 AT1G66540.2 25.688 218 154 3 232 448 81 291 1.73e-18 86.7
Msa0611450 AT1G66540.1 25.688 218 154 3 232 448 140 350 2.45e-18 87.0
Msa0611450 AT2G45550.1 23.663 486 316 15 3 444 1 475 3.08e-18 87.8
Msa0611450 AT1G74110.1 23.245 413 255 16 83 446 112 511 3.77e-18 87.4
Msa0611450 AT4G37340.1 24.887 221 160 3 230 448 247 463 7.10e-18 86.7
Msa0611450 AT5G24910.1 21.868 439 303 13 66 469 98 531 7.29e-18 86.7
Msa0611450 AT4G36220.1 22.398 442 297 10 44 444 47 483 7.44e-18 86.7
Msa0611450 AT4G37360.1 26.768 198 140 2 252 448 270 463 7.67e-18 86.3
Msa0611450 AT3G61040.1 24.439 446 298 12 36 451 32 468 1.04e-17 85.9
Msa0611450 AT4G15110.1 26.154 260 150 7 227 452 307 558 1.41e-17 85.9
Msa0611450 AT2G28860.1 22.689 357 245 8 111 445 114 461 3.69e-17 84.3
Msa0611450 AT2G27010.1 22.010 418 285 13 68 458 66 469 4.33e-17 84.0
Msa0611450 AT2G40890.1 22.869 481 301 17 8 442 5 461 4.35e-17 84.3
Msa0611450 AT2G46660.1 23.462 439 288 17 39 442 72 497 4.55e-17 84.3
Msa0611450 AT2G26170.1 22.667 450 284 12 39 436 47 484 4.74e-17 84.0
Msa0611450 AT4G37410.1 25.523 239 163 5 215 445 230 461 1.12e-16 82.8
Msa0611450 AT5G42580.1 21.256 414 274 13 68 446 70 466 1.28e-16 82.8
Msa0611450 AT5G25130.1 23.909 481 298 18 7 444 6 461 1.48e-16 82.4
Msa0611450 AT4G37330.1 25.229 218 158 2 230 446 245 458 1.51e-16 82.4
Msa0611450 AT4G27710.1 23.709 426 289 14 68 464 93 511 1.57e-16 82.4
Msa0611450 AT2G45580.1 22.545 448 289 13 47 451 48 480 1.81e-16 82.4
Msa0611450 AT5G09970.1 23.266 447 287 16 39 442 71 504 2.85e-16 81.6
Msa0611450 AT2G23220.1 22.273 220 166 2 230 448 263 478 4.54e-16 80.9
Msa0611450 AT5G67310.1 23.188 483 304 18 3 443 12 469 4.86e-16 80.9
Msa0611450 AT5G24900.2 26.961 204 133 5 272 466 210 406 1.10e-15 79.3
Msa0611450 AT5G24900.1 21.769 441 302 11 62 466 90 523 1.18e-15 79.7
Msa0611450 AT2G28850.1 22.129 357 247 7 111 445 114 461 1.62e-15 79.3
Msa0611450 AT1G33720.1 25.259 483 312 20 3 444 1 475 1.76e-15 79.3
Msa0611450 AT5G24950.1 22.511 462 311 14 29 454 24 474 2.44e-15 78.6
Msa0611450 AT4G31940.1 27.604 192 120 6 248 425 283 469 3.33e-15 78.2
Msa0611450 AT1G50520.1 21.810 431 289 14 62 452 68 490 4.17e-15 78.2
Msa0611450 AT5G47990.1 23.113 424 278 18 62 446 67 481 4.29e-15 77.8
Msa0611450 AT1G64930.1 29.851 201 121 7 261 448 291 484 5.22e-15 77.8
Msa0611450 AT2G34490.1 21.443 485 339 16 5 462 15 484 9.11e-15 77.0
Msa0611450 AT2G46950.1 21.642 402 282 10 66 441 146 540 1.07e-14 77.0
Msa0611450 AT2G24180.1 23.543 446 295 16 37 445 36 472 1.64e-14 76.3
Msa0611450 AT5G36220.1 19.626 321 238 5 128 446 165 467 1.77e-14 75.9
Msa0611450 AT1G13710.1 22.912 467 280 18 37 442 35 482 1.84e-14 75.9
Msa0611450 AT4G37310.1 24.783 230 163 5 241 464 263 488 2.72e-14 75.5
Msa0611450 AT5G36220.2 23.810 210 155 2 238 446 116 321 4.19e-14 73.9
Msa0611450 AT3G52970.1 22.958 453 305 11 33 444 32 481 9.30e-14 73.9
Msa0611450 AT2G26170.2 27.119 236 151 5 215 436 173 401 9.33e-14 73.6
Msa0611450 AT4G31950.1 26.027 219 137 7 227 425 244 457 1.04e-13 73.6
Msa0611450 AT1G50560.1 24.242 231 157 4 230 446 259 485 1.47e-13 73.2
Msa0611450 AT3G26190.1 24.832 447 276 17 33 430 24 459 1.82e-13 72.8
Msa0611450 AT3G26200.1 24.887 442 282 16 33 430 24 459 1.87e-13 72.8
Msa0611450 AT2G45580.2 24.180 244 163 5 223 451 90 326 1.96e-13 72.0
Msa0611450 AT1G28430.1 22.363 237 166 4 230 452 253 485 3.91e-13 72.0
Msa0611450 AT4G15360.1 21.384 477 333 13 2 444 8 476 4.32e-13 71.6
Msa0611450 AT3G44250.1 24.444 450 273 19 33 430 24 458 4.86e-13 71.6
Msa0611450 AT4G12330.1 22.118 425 288 10 57 444 63 481 6.05e-13 71.2
Msa0611450 AT1G75130.1 24.868 378 254 13 69 425 89 457 6.60e-13 71.2
Msa0611450 AT3G25180.1 22.651 415 275 15 62 440 65 469 7.24e-13 70.9
Msa0611450 AT4G13290.1 23.632 457 295 17 24 444 20 458 1.45e-12 70.1
Msa0611450 AT1G01190.1 22.103 466 299 17 20 442 55 499 1.82e-12 69.7
Msa0611450 AT1G01190.2 22.103 466 299 17 20 442 60 504 2.50e-12 69.3
Msa0611450 AT1G11600.1 27.083 192 125 3 262 442 291 478 2.82e-12 69.3
Msa0611450 AT3G53300.1 21.174 477 308 18 34 462 25 481 1.28e-11 67.0
Msa0611450 AT1G33730.1 24.569 232 163 5 221 444 112 339 1.36e-11 66.2
Msa0611450 AT1G33730.2 24.569 232 163 5 221 444 112 339 1.36e-11 66.2
Msa0611450 AT3G26150.1 20.077 518 336 15 7 466 3 500 3.99e-11 65.5
Msa0611450 AT3G20120.4 19.759 415 291 12 68 446 72 480 6.85e-11 64.7

Find 138 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTTAAATTTACCTAAATT+TGG 0.175919 4_2:-59671807 None:intergenic
CGCTTTCCATGAAATGAAAA+AGG 0.175957 4_2:+59670045 Msa0611450:CDS
ATCAATTTCTTAATTGATTC+AGG 0.190411 4_2:-59669956 None:intergenic
GATGTTCCGGGTATCTTATT+TGG 0.196265 4_2:-59670507 None:intergenic
CTTAAGCTGTTCTCTATAAT+TGG 0.196410 4_2:-59670445 None:intergenic
TTATGGCTTCAAGAAGTTTC+TGG 0.199013 4_2:-59670917 None:intergenic
TAAAATCAACATGTTCAATT+TGG 0.206623 4_2:-59671768 None:intergenic
CTAAACTACAAGGATGAAAA+AGG 0.227377 4_2:+59670783 Msa0611450:CDS
AAAAGCAAAGAAAAGCTTAT+TGG 0.228275 4_2:+59669860 Msa0611450:CDS
GGATTGGGAATGGGCTATAT+TGG 0.245695 4_2:-59671959 None:intergenic
TTGTATTGTGTAGGTAATAT+TGG 0.249201 4_2:+59671265 Msa0611450:intron
GCATCATATCATTCACGTTT+AGG 0.258699 4_2:+59671306 Msa0611450:CDS
ATCATACTCCAAAGCTCTTT+TGG 0.265661 4_2:+59670527 Msa0611450:CDS
TGAAAAGTTTCTCCTATATA+AGG 0.274969 4_2:-59669562 None:intergenic
TGAGGAGCAGGGTAGAATTC+TGG 0.289769 4_2:-59671531 None:intergenic
CATCATATCATTCACGTTTA+GGG 0.289792 4_2:+59671307 Msa0611450:CDS
TTAGAAGCAAAGAAGATGTT+AGG 0.291777 4_2:-59669601 None:intergenic
TTGCTACACTTGCATGTATA+TGG 0.301879 4_2:+59669417 Msa0611450:exon
GTTTGGCAGGTGGGAGGTAG+TGG 0.304492 4_2:+59671920 Msa0611450:intron
AGCTTTGGAGTATGATGTTC+CGG 0.315647 4_2:-59670520 None:intergenic
AATGAACCTGGAGGAAGTTT+AGG 0.317092 4_2:-59669532 None:intergenic
CCAAATGGCATAAAAGTATT+GGG 0.318496 4_2:-59671710 None:intergenic
ATATTTAAGACACACATATT+AGG 0.320706 4_2:+59669752 Msa0611450:CDS
ATCATCTAGTAACCAAATTT+AGG 0.324641 4_2:+59671795 Msa0611450:CDS
CTACAGCTAGTGTTCTTACT+TGG 0.327558 4_2:+59670871 Msa0611450:CDS
CCTCTCTGTCTTTGGTAACT+TGG 0.334282 4_2:+59670419 Msa0611450:CDS
ATCTTTGTGTGGATGGAATA+TGG 0.334855 4_2:-59669357 None:intergenic
ATGTTCCGGGTATCTTATTT+GGG 0.340127 4_2:-59670506 None:intergenic
TAAACTTCCTCCAGGTTCAT+TGG 0.346471 4_2:+59669534 Msa0611450:CDS
AAGGTCTACCCACAAGATTT+TGG 0.363059 4_2:+59671988 Msa0611450:CDS
AATTTGGCTAGCTCATTTCC+TGG 0.372245 4_2:-59671752 None:intergenic
GTCGGGATCCTCTCTGTCTT+TGG 0.372445 4_2:+59670411 Msa0611450:CDS
TCATTGGGTTGGCCTTATAT+AGG 0.376295 4_2:+59669550 Msa0611450:CDS
GGCAGTTCTCTTTCAATGTC+GGG 0.378579 4_2:+59670394 Msa0611450:intron
TTCCTCCAGGTTCATTGGGT+TGG 0.381628 4_2:+59669539 Msa0611450:CDS
GGCATAAAAGTATTGGGCTT+TGG 0.388055 4_2:-59671704 None:intergenic
GGCATTACTTTCCAACCCTT+TGG 0.388434 4_2:-59671483 None:intergenic
TTGAATGAGAAGGATCTATT+AGG 0.391625 4_2:+59670753 Msa0611450:CDS
TAAATTTGGTTACTAGATGA+TGG 0.399270 4_2:-59671793 None:intergenic
GAAGCTTACCAAAAGAGCTT+TGG 0.399481 4_2:-59670535 None:intergenic
TTATTGAATTTCTTTATGAA+TGG 0.400718 4_2:-59669490 None:intergenic
GCCAAATGGCATAAAAGTAT+TGG 0.401232 4_2:-59671711 None:intergenic
AGCAACTTTGGAGTAGTTGC+AGG 0.403947 4_2:-59669399 None:intergenic
GGTAGACCTTGCTGAGGGAT+TGG 0.409632 4_2:-59671975 None:intergenic
GGAGTAGTTGCAGGCGTAGA+AGG 0.411323 4_2:-59669390 None:intergenic
TAGTATACCTCAAATCTTGA+TGG 0.414171 4_2:-59671564 None:intergenic
AAACTTCCTCCAGGTTCATT+GGG 0.414333 4_2:+59669535 Msa0611450:CDS
ATGAGAGAAAGATGAGGAAG+AGG 0.416062 4_2:-59669453 None:intergenic
CATCCTTGTAGTTTAGCAAA+TGG 0.417428 4_2:-59670776 None:intergenic
AGGGAAAATGTTAACTGATA+AGG 0.417614 4_2:+59670803 Msa0611450:CDS
TCATTTCCTCACTAGAATCC+TGG 0.422005 4_2:+59669999 Msa0611450:CDS
ACCTGGAGGAAGTTTAGGTT+TGG 0.430894 4_2:-59669527 None:intergenic
TAAAGTAATAAGAAAGTTGA+TGG 0.434959 4_2:-59672416 None:intergenic
ACATGCAAGTGTAGCAACTT+TGG 0.437973 4_2:-59669411 None:intergenic
CATATTACAGGCTGAGCAAA+TGG 0.441567 4_2:+59671042 Msa0611450:intron
TTTGGCAGGTGGGAGGTAGT+GGG 0.445491 4_2:+59671921 Msa0611450:intron
CATACCTATTCTATTGTAAA+GGG 0.446010 4_2:+59672196 Msa0611450:three_prime_UTR
AATCAAATGAGATCAATGTT+GGG 0.446309 4_2:-59672087 None:intergenic
GAAGTTGCTGATAATGTCAT+TGG 0.447481 4_2:+59670825 Msa0611450:CDS
AAATATGCCACTTACTCATA+AGG 0.449078 4_2:+59671120 Msa0611450:CDS
TTTATCTGACCCCATGTCAA+TGG 0.449977 4_2:-59671097 None:intergenic
TGGAATCTTCCCTCCATCAT+TGG 0.450558 4_2:-59671077 None:intergenic
GTAGACCTTGCTGAGGGATT+GGG 0.450729 4_2:-59671974 None:intergenic
ACATACCTATTCTATTGTAA+AGG 0.451493 4_2:+59672195 Msa0611450:three_prime_UTR
CATATAGGTATGAAGGTACT+AGG 0.455239 4_2:-59672146 None:intergenic
TTCTAAGCATATAGGTATGA+AGG 0.457842 4_2:-59672153 None:intergenic
GCTTTGGAGTATGATGTTCC+GGG 0.462286 4_2:-59670519 None:intergenic
GGGTCAAAATTATGAGGAGC+AGG 0.462427 4_2:-59671543 None:intergenic
GAATCAAATGAGATCAATGT+TGG 0.463221 4_2:-59672088 None:intergenic
CAACACAAATCTTGCAGCCT+CGG 0.464916 4_2:-59669801 None:intergenic
TGGCAGTTCTCTTTCAATGT+CGG 0.465740 4_2:+59670393 Msa0611450:intron
ATATGATGCTTGACATCCTT+AGG 0.466886 4_2:-59671292 None:intergenic
CATTTCCTCACTAGAATCCT+GGG 0.467464 4_2:+59670000 Msa0611450:CDS
TTTGATTCTCCAAAATCTTG+TGG 0.468913 4_2:-59671997 None:intergenic
TGAGATAATTTGCAAGAGAA+AGG 0.471556 4_2:+59670722 Msa0611450:CDS
CAATTATAGAGAACAGCTTA+AGG 0.481085 4_2:+59670446 Msa0611450:CDS
AACACAAATCTTGCAGCCTC+GGG 0.482925 4_2:-59669800 None:intergenic
CTGCGAAATCTTTGTGTGGA+TGG 0.486127 4_2:-59669364 None:intergenic
CCTTGCTGAGGGATTGGGAA+TGG 0.487232 4_2:-59671969 None:intergenic
TACCATACCTTATGAGTAAG+TGG 0.488143 4_2:-59671127 None:intergenic
GATATTTAATACCAAAGGGT+TGG 0.489000 4_2:+59671472 Msa0611450:CDS
TTGATTCTCCAAAATCTTGT+GGG 0.489166 4_2:-59671996 None:intergenic
AGGAAGTTTAGGTTTGGCTA+TGG 0.490163 4_2:-59669521 None:intergenic
CTTGCTGAGGGATTGGGAAT+GGG 0.490233 4_2:-59671968 None:intergenic
CTTGATGGGTCAAAATTATG+AGG 0.491919 4_2:-59671549 None:intergenic
GAGATTACCACACTCGCATC+AGG 0.493579 4_2:+59669909 Msa0611450:CDS
TAGAAGCAAAGAAGATGTTA+GGG 0.494475 4_2:-59669600 None:intergenic
TCAAGGATATTTAATACCAA+AGG 0.499241 4_2:+59671467 Msa0611450:intron
CAAGGATATTTAATACCAAA+GGG 0.500893 4_2:+59671468 Msa0611450:intron
AATGGAGTGCACTCATGTCC+AGG 0.511845 4_2:+59671734 Msa0611450:CDS
GGTAGAATTCTGGATTATGA+TGG 0.525486 4_2:-59671521 None:intergenic
GCCAAACCTAAACTTCCTCC+AGG 0.527470 4_2:+59669526 Msa0611450:CDS
TGCGAGTGTGGTAATCTCCT+TGG 0.532116 4_2:-59669904 None:intergenic
GCCACCCTTTACAATAGAAT+AGG 0.535094 4_2:-59672200 None:intergenic
TAAGGCCAACCCAATGAACC+TGG 0.538206 4_2:-59669544 None:intergenic
AGGCCATTTGCTAAACTACA+AGG 0.540203 4_2:+59670773 Msa0611450:CDS
GAGTGCACTCCATTGCCAAA+TGG 0.545280 4_2:-59671725 None:intergenic
TTAGAAACCACTTACATACT+CGG 0.550095 4_2:-59672253 None:intergenic
AGATCAATGTTGGGGTGGCA+AGG 0.558406 4_2:-59672078 None:intergenic
TGTGGATGGAATATGGTTCA+AGG 0.566212 4_2:-59669350 None:intergenic
AGGTAATATTGGAAAGCCTA+AGG 0.566695 4_2:+59671276 Msa0611450:intron
GAGGGAAGATTCCATTGACA+TGG 0.569287 4_2:+59671086 Msa0611450:CDS
GGAGCAGAGATTGAATGAGA+AGG 0.573774 4_2:+59670743 Msa0611450:CDS
AATTACTGCATAGTAGAGAA+AGG 0.574763 4_2:+59670471 Msa0611450:CDS
CGAGGCTGCAAGATTTGTGT+TGG 0.576217 4_2:+59669802 Msa0611450:CDS
AGTATACCTCAAATCTTGAT+GGG 0.581207 4_2:-59671563 None:intergenic
TCTTTATGAATGGATATGAG+AGG 0.581633 4_2:-59669480 None:intergenic
CATACTCGGATTAATTGACA+TGG 0.587601 4_2:-59672239 None:intergenic
GGAGAGATGAGAGAAAGATG+AGG 0.587664 4_2:-59669459 None:intergenic
GATGGAATATGGTTCAAGGC+AGG 0.598157 4_2:-59669346 None:intergenic
ACCTATTCTATTGTAAAGGG+TGG 0.599372 4_2:+59672199 Msa0611450:three_prime_UTR
TGTGGTTGATGTGGTATACA+AGG 0.599457 4_2:+59671334 Msa0611450:CDS
ATCAAATGAGATCAATGTTG+GGG 0.613062 4_2:-59672086 None:intergenic
AAATGAGATCAATGTTGGGG+TGG 0.614190 4_2:-59672083 None:intergenic
GCAGTATGTGATACCAATGA+TGG 0.615249 4_2:+59671064 Msa0611450:CDS
GTATGTGATACCAATGATGG+AGG 0.619371 4_2:+59671067 Msa0611450:CDS
ATTCACGTTTAGGGAAGCTG+TGG 0.619792 4_2:+59671316 Msa0611450:CDS
TAGGGAAGCTGTGGTTGATG+TGG 0.623756 4_2:+59671325 Msa0611450:CDS
CGAGTTTCCTGATGCGAGTG+TGG 0.624057 4_2:-59669916 None:intergenic
TCTTTCCCAAATAAGATACC+CGG 0.625072 4_2:+59670501 Msa0611450:CDS
AGGGAAGATTCCATTGACAT+GGG 0.626500 4_2:+59671087 Msa0611450:CDS
TTGTGGGTAGACCTTGCTGA+GGG 0.629302 4_2:-59671980 None:intergenic
GGACTTGTTAACATCACACA+TGG 0.637062 4_2:-59669779 None:intergenic
GAGGTAGTGGGATATCAAAG+TGG 0.640983 4_2:+59671933 Msa0611450:CDS
ATTGTCTAAATTAGGCGAGG+TGG 0.644327 4_2:+59670679 Msa0611450:intron
ATATTTGTTTGGCAGGTGGG+AGG 0.645744 4_2:+59671914 Msa0611450:intron
TCTGCATTATTCTTTCACCA+AGG 0.653614 4_2:+59669887 Msa0611450:CDS
CTTGTGGGTAGACCTTGCTG+AGG 0.655922 4_2:-59671981 None:intergenic
TATGTGATACCAATGATGGA+GGG 0.670681 4_2:+59671068 Msa0611450:CDS
GGTCAAAATTATGAGGAGCA+GGG 0.673511 4_2:-59671542 None:intergenic
CCATTCCCAATCCCTCAGCA+AGG 0.677459 4_2:+59671969 Msa0611450:CDS
TGATGGATGTTTCTGAACAG+TGG 0.679204 4_2:-59671504 None:intergenic
GAAACTGCGAAATCTTTGTG+TGG 0.684889 4_2:-59669368 None:intergenic
CCAAGTTACCAAAGACAGAG+AGG 0.687120 4_2:-59670419 None:intergenic
GGGAAGATTCCATTGACATG+GGG 0.697651 4_2:+59671088 Msa0611450:CDS
GGCCAACCCAATGAACCTGG+AGG 0.704247 4_2:-59669541 None:intergenic
TGTGATGTTAACAAGTCCCG+AGG 0.744003 4_2:+59669784 Msa0611450:CDS
GTGGTTGATGTGGTATACAA+GGG 0.754107 4_2:+59671335 Msa0611450:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTTTTTTATATAT+AGG + chr4_2:59670186-59670205 Msa0611450:intron 0.0%
!! AAATAATTTACATATGATTA+AGG - chr4_2:59669650-59669669 None:intergenic 10.0%
!!! TAATCATATGTAAATTATTT+TGG + chr4_2:59669650-59669669 Msa0611450:intron 10.0%
!!! AATCATATGTAAATTATTTT+GGG + chr4_2:59669651-59669670 Msa0611450:intron 10.0%
!!! TTTTTTTTTATATATAGGAT+CGG + chr4_2:59670191-59670210 Msa0611450:intron 10.0%
!!! ATTAATTTTTGTACATTTAT+AGG + chr4_2:59671374-59671393 Msa0611450:intron 10.0%
!! AATTTAAATTTACCTAAATT+TGG - chr4_2:59671810-59671829 None:intergenic 10.0%
!! TTATTGAATTTCTTTATGAA+TGG - chr4_2:59669493-59669512 None:intergenic 15.0%
!! AATATAACTTGACTAAAAAT+TGG + chr4_2:59670652-59670671 Msa0611450:intron 15.0%
!! ATATATATACATATATGACT+AGG - chr4_2:59671624-59671643 None:intergenic 15.0%
!! TATTTATGCTTATGAATATA+TGG + chr4_2:59671661-59671680 Msa0611450:intron 15.0%
!! ATTGCATTATGAATAAAATA+TGG - chr4_2:59671861-59671880 None:intergenic 15.0%
!!! CATCATATAATAATTTTCTT+TGG - chr4_2:59672028-59672047 None:intergenic 15.0%
!!! TTATTTTATCATTTAGTTGA+TGG + chr4_2:59672391-59672410 Msa0611450:three_prime_UTR 15.0%
!! ATATTGATCATAATCAGATA+CGG + chr4_2:59669725-59669744 Msa0611450:intron 20.0%
!!! ATATTTAAGACACACATATT+AGG + chr4_2:59669752-59669771 Msa0611450:CDS 20.0%
!!! ATCAATTTCTTAATTGATTC+AGG - chr4_2:59669959-59669978 None:intergenic 20.0%
!! GATGAAATATATTGTCTTAT+TGG + chr4_2:59670263-59670282 Msa0611450:intron 20.0%
!!! TGAATTTTGTTTTCATTTGT+CGG + chr4_2:59670304-59670323 Msa0611450:intron 20.0%
!! TTGGTTAAATTGTCTAAATT+AGG + chr4_2:59670671-59670690 Msa0611450:intron 20.0%
!!! ATATTGATTTTCAAAACTGA+GGG - chr4_2:59670989-59671008 None:intergenic 20.0%
!!! AATATTGATTTTCAAAACTG+AGG - chr4_2:59670990-59671009 None:intergenic 20.0%
!! TAATAAACTGTACATATTAC+AGG + chr4_2:59671030-59671049 Msa0611450:intron 20.0%
!! TAAAATCAACATGTTCAATT+TGG - chr4_2:59671771-59671790 None:intergenic 20.0%
!! TAAAGTAATAAGAAAGTTGA+TGG - chr4_2:59672419-59672438 None:intergenic 20.0%
! TGAAAAGTTTCTCCTATATA+AGG - chr4_2:59669565-59669584 None:intergenic 25.0%
! TCTTTGCTTCTAAACAAAAA+AGG + chr4_2:59669611-59669630 Msa0611450:CDS 25.0%
!!! GGGTTAGCTTAATTAATTAT+TGG + chr4_2:59669671-59669690 Msa0611450:intron 25.0%
!!! ATAAGCTTTTCTTTGCTTTT+GGG - chr4_2:59669860-59669879 None:intergenic 25.0%
!! AATAAGCTTTTCTTTGCTTT+TGG - chr4_2:59669861-59669880 None:intergenic 25.0%
! AAAAGCAAAGAAAAGCTTAT+TGG + chr4_2:59669860-59669879 Msa0611450:CDS 25.0%
!! TGACTTCATTTTCAATATCA+GGG - chr4_2:59669982-59670001 None:intergenic 25.0%
!! ATGACTTCATTTTCAATATC+AGG - chr4_2:59669983-59670002 None:intergenic 25.0%
!!! AACAAACCTTTTTCATTTCA+TGG - chr4_2:59670054-59670073 None:intergenic 25.0%
!!! TTTTTTATATATAGGATCGG+AGG + chr4_2:59670194-59670213 Msa0611450:intron 25.0%
! GTGACAATAAATTCATGATT+AGG - chr4_2:59670331-59670350 None:intergenic 25.0%
! AATCATGAATTTATTGTCAC+TGG + chr4_2:59670331-59670350 Msa0611450:intron 25.0%
! ATCATGAATTTATTGTCACT+GGG + chr4_2:59670332-59670351 Msa0611450:intron 25.0%
! TAAACTACAAGGATGAAAAA+GGG + chr4_2:59670784-59670803 Msa0611450:CDS 25.0%
!!! GACAAAAACTCTTACTTTTA+TGG - chr4_2:59670937-59670956 None:intergenic 25.0%
!! GTAAATAACTTGTATTGTGT+AGG + chr4_2:59671256-59671275 Msa0611450:intron 25.0%
! TTGTATTGTGTAGGTAATAT+TGG + chr4_2:59671265-59671284 Msa0611450:intron 25.0%
! TCAAGGATATTTAATACCAA+AGG + chr4_2:59671467-59671486 Msa0611450:intron 25.0%
! CAAGGATATTTAATACCAAA+GGG + chr4_2:59671468-59671487 Msa0611450:intron 25.0%
! TATATACATATATGACTAGG+TGG - chr4_2:59671621-59671640 None:intergenic 25.0%
!! CTTATGAATATATGGATTGA+TGG + chr4_2:59671669-59671688 Msa0611450:intron 25.0%
! TAAATTTGGTTACTAGATGA+TGG - chr4_2:59671796-59671815 None:intergenic 25.0%
! ATCATCTAGTAACCAAATTT+AGG + chr4_2:59671795-59671814 Msa0611450:CDS 25.0%
! AATCAAATGAGATCAATGTT+GGG - chr4_2:59672090-59672109 None:intergenic 25.0%
!!! TTCTTTTGTTCTAAGCATAT+AGG - chr4_2:59672164-59672183 None:intergenic 25.0%
! ACATACCTATTCTATTGTAA+AGG + chr4_2:59672195-59672214 Msa0611450:three_prime_UTR 25.0%
! CATACCTATTCTATTGTAAA+GGG + chr4_2:59672196-59672215 Msa0611450:three_prime_UTR 25.0%
TCTTTATGAATGGATATGAG+AGG - chr4_2:59669483-59669502 None:intergenic 30.0%
TAGAAGCAAAGAAGATGTTA+GGG - chr4_2:59669603-59669622 None:intergenic 30.0%
TTAGAAGCAAAGAAGATGTT+AGG - chr4_2:59669604-59669623 None:intergenic 30.0%
TCCTTCATTATTGTTTGGTT+TGG + chr4_2:59670361-59670380 Msa0611450:intron 30.0%
ACCAAACCAAACAATAATGA+AGG - chr4_2:59670365-59670384 None:intergenic 30.0%
!! GTTTGGTTTGGTTTGATTAT+TGG + chr4_2:59670373-59670392 Msa0611450:intron 30.0%
CTTAAGCTGTTCTCTATAAT+TGG - chr4_2:59670448-59670467 None:intergenic 30.0%
CAATTATAGAGAACAGCTTA+AGG + chr4_2:59670446-59670465 Msa0611450:CDS 30.0%
AATTACTGCATAGTAGAGAA+AGG + chr4_2:59670471-59670490 Msa0611450:CDS 30.0%
TAAATTGTCTAAATTAGGCG+AGG + chr4_2:59670676-59670695 Msa0611450:intron 30.0%
! TGAGATAATTTGCAAGAGAA+AGG + chr4_2:59670722-59670741 Msa0611450:CDS 30.0%
TTGAATGAGAAGGATCTATT+AGG + chr4_2:59670753-59670772 Msa0611450:CDS 30.0%
CTAAACTACAAGGATGAAAA+AGG + chr4_2:59670783-59670802 Msa0611450:CDS 30.0%
AGGGAAAATGTTAACTGATA+AGG + chr4_2:59670803-59670822 Msa0611450:CDS 30.0%
! AAGAGTTTTTGTCTCTATCA+TGG + chr4_2:59670944-59670963 Msa0611450:intron 30.0%
ATGGATTTCCTATTCCTTAT+TGG + chr4_2:59670963-59670982 Msa0611450:intron 30.0%
! AAATATGCCACTTACTCATA+AGG + chr4_2:59671120-59671139 Msa0611450:CDS 30.0%
TACTATATACTATGCATGCA+TGG + chr4_2:59671161-59671180 Msa0611450:intron 30.0%
CATCATATCATTCACGTTTA+GGG + chr4_2:59671307-59671326 Msa0611450:CDS 30.0%
! ACAAGGGTAAGAATTTTAGA+CGG + chr4_2:59671351-59671370 Msa0611450:intron 30.0%
GATATTTAATACCAAAGGGT+TGG + chr4_2:59671472-59671491 Msa0611450:CDS 30.0%
AGTATACCTCAAATCTTGAT+GGG - chr4_2:59671566-59671585 None:intergenic 30.0%
TAGTATACCTCAAATCTTGA+TGG - chr4_2:59671567-59671586 None:intergenic 30.0%
!! CCAAATGGCATAAAAGTATT+GGG - chr4_2:59671713-59671732 None:intergenic 30.0%
GGTTGTGTTCAATATTTGTT+TGG + chr4_2:59671903-59671922 Msa0611450:intron 30.0%
TTGATTCTCCAAAATCTTGT+GGG - chr4_2:59671999-59672018 None:intergenic 30.0%
TTTGATTCTCCAAAATCTTG+TGG - chr4_2:59672000-59672019 None:intergenic 30.0%
ATCAAATGAGATCAATGTTG+GGG - chr4_2:59672089-59672108 None:intergenic 30.0%
GAATCAAATGAGATCAATGT+TGG - chr4_2:59672091-59672110 None:intergenic 30.0%
TTCTAAGCATATAGGTATGA+AGG - chr4_2:59672156-59672175 None:intergenic 30.0%
AATTAATCCGAGTATGTAAG+TGG + chr4_2:59672246-59672265 Msa0611450:intron 30.0%
TTAGAAACCACTTACATACT+CGG - chr4_2:59672256-59672275 None:intergenic 30.0%
ATCTTTGTGTGGATGGAATA+TGG - chr4_2:59669360-59669379 None:intergenic 35.0%
TTGCTACACTTGCATGTATA+TGG + chr4_2:59669417-59669436 Msa0611450:exon 35.0%
!!! TCTTTGCTTTTGGGATATGT+AGG - chr4_2:59669851-59669870 None:intergenic 35.0%
TCTGCATTATTCTTTCACCA+AGG + chr4_2:59669887-59669906 Msa0611450:CDS 35.0%
! CTAGAATCCTGGGTTTTTAT+TGG + chr4_2:59670010-59670029 Msa0611450:CDS 35.0%
CGCTTTCCATGAAATGAAAA+AGG + chr4_2:59670045-59670064 Msa0611450:CDS 35.0%
CCAAACAATAATGAAGGAGA+AGG - chr4_2:59670359-59670378 None:intergenic 35.0%
CCTTCTCCTTCATTATTGTT+TGG + chr4_2:59670356-59670375 Msa0611450:intron 35.0%
TCTTTCCCAAATAAGATACC+CGG + chr4_2:59670501-59670520 Msa0611450:CDS 35.0%
! ATGTTCCGGGTATCTTATTT+GGG - chr4_2:59670509-59670528 None:intergenic 35.0%
! ATCATACTCCAAAGCTCTTT+TGG + chr4_2:59670527-59670546 Msa0611450:CDS 35.0%
CATCCTTGTAGTTTAGCAAA+TGG - chr4_2:59670779-59670798 None:intergenic 35.0%
! GAAGTTGCTGATAATGTCAT+TGG + chr4_2:59670825-59670844 Msa0611450:CDS 35.0%
TTATGGCTTCAAGAAGTTTC+TGG - chr4_2:59670920-59670939 None:intergenic 35.0%
! TATGTGATACCAATGATGGA+GGG + chr4_2:59671068-59671087 Msa0611450:CDS 35.0%
TACCATACCTTATGAGTAAG+TGG - chr4_2:59671130-59671149 None:intergenic 35.0%
AGGTAATATTGGAAAGCCTA+AGG + chr4_2:59671276-59671295 Msa0611450:intron 35.0%
ATATGATGCTTGACATCCTT+AGG - chr4_2:59671295-59671314 None:intergenic 35.0%
GCATCATATCATTCACGTTT+AGG + chr4_2:59671306-59671325 Msa0611450:CDS 35.0%
GTTCTTTGATGCAACTATCA+AGG + chr4_2:59671450-59671469 Msa0611450:intron 35.0%
GGTAGAATTCTGGATTATGA+TGG - chr4_2:59671524-59671543 None:intergenic 35.0%
! CTTGATGGGTCAAAATTATG+AGG - chr4_2:59671552-59671571 None:intergenic 35.0%
! TTTTGACCCATCAAGATTTG+AGG + chr4_2:59671557-59671576 Msa0611450:CDS 35.0%
ATACATATATGACTAGGTGG+TGG - chr4_2:59671618-59671637 None:intergenic 35.0%
! CCCAATACTTTTATGCCATT+TGG + chr4_2:59671710-59671729 Msa0611450:CDS 35.0%
! GCCAAATGGCATAAAAGTAT+TGG - chr4_2:59671714-59671733 None:intergenic 35.0%
!! ACTTTTATGCCATTTGGCAA+TGG + chr4_2:59671716-59671735 Msa0611450:CDS 35.0%
GTGTTCAATATTTGTTTGGC+AGG + chr4_2:59671907-59671926 Msa0611450:intron 35.0%
TTCAATATTTGTTTGGCAGG+TGG + chr4_2:59671910-59671929 Msa0611450:intron 35.0%
TCAATATTTGTTTGGCAGGT+GGG + chr4_2:59671911-59671930 Msa0611450:intron 35.0%
!! CATATAGGTATGAAGGTACT+AGG - chr4_2:59672149-59672168 None:intergenic 35.0%
ACCTATTCTATTGTAAAGGG+TGG + chr4_2:59672199-59672218 Msa0611450:three_prime_UTR 35.0%
CATACTCGGATTAATTGACA+TGG - chr4_2:59672242-59672261 None:intergenic 35.0%
TGTGGATGGAATATGGTTCA+AGG - chr4_2:59669353-59669372 None:intergenic 40.0%
GAAACTGCGAAATCTTTGTG+TGG - chr4_2:59669371-59669390 None:intergenic 40.0%
ACATGCAAGTGTAGCAACTT+TGG - chr4_2:59669414-59669433 None:intergenic 40.0%
ATGAGAGAAAGATGAGGAAG+AGG - chr4_2:59669456-59669475 None:intergenic 40.0%
! AGGAAGTTTAGGTTTGGCTA+TGG - chr4_2:59669524-59669543 None:intergenic 40.0%
AATGAACCTGGAGGAAGTTT+AGG - chr4_2:59669535-59669554 None:intergenic 40.0%
TAAACTTCCTCCAGGTTCAT+TGG + chr4_2:59669534-59669553 Msa0611450:CDS 40.0%
AAACTTCCTCCAGGTTCATT+GGG + chr4_2:59669535-59669554 Msa0611450:CDS 40.0%
!! TCATTGGGTTGGCCTTATAT+AGG + chr4_2:59669550-59669569 Msa0611450:CDS 40.0%
!! GGACTTGTTAACATCACACA+TGG - chr4_2:59669782-59669801 None:intergenic 40.0%
TCATTTCCTCACTAGAATCC+TGG + chr4_2:59669999-59670018 Msa0611450:CDS 40.0%
CATTTCCTCACTAGAATCCT+GGG + chr4_2:59670000-59670019 Msa0611450:CDS 40.0%
AAAAACCCAGGATTCTAGTG+AGG - chr4_2:59670008-59670027 None:intergenic 40.0%
GACTTGTCCAATAAAAACCC+AGG - chr4_2:59670020-59670039 None:intergenic 40.0%
TGGCAGTTCTCTTTCAATGT+CGG + chr4_2:59670393-59670412 Msa0611450:intron 40.0%
GATGTTCCGGGTATCTTATT+TGG - chr4_2:59670510-59670529 None:intergenic 40.0%
!! AGCTTTGGAGTATGATGTTC+CGG - chr4_2:59670523-59670542 None:intergenic 40.0%
GAAGCTTACCAAAAGAGCTT+TGG - chr4_2:59670538-59670557 None:intergenic 40.0%
! CTTCAATGCAGTGCAACTTT+TGG + chr4_2:59670554-59670573 Msa0611450:intron 40.0%
TCGATCACTAACTGCAATTG+CGG + chr4_2:59670606-59670625 Msa0611450:intron 40.0%
ATTGTCTAAATTAGGCGAGG+TGG + chr4_2:59670679-59670698 Msa0611450:intron 40.0%
! AGGCCATTTGCTAAACTACA+AGG + chr4_2:59670773-59670792 Msa0611450:CDS 40.0%
CTACAGCTAGTGTTCTTACT+TGG + chr4_2:59670871-59670890 Msa0611450:CDS 40.0%
TTCAAAACTGAGGGCCAATA+AGG - chr4_2:59670980-59670999 None:intergenic 40.0%
CATATTACAGGCTGAGCAAA+TGG + chr4_2:59671042-59671061 Msa0611450:intron 40.0%
GCAGTATGTGATACCAATGA+TGG + chr4_2:59671064-59671083 Msa0611450:CDS 40.0%
GTATGTGATACCAATGATGG+AGG + chr4_2:59671067-59671086 Msa0611450:CDS 40.0%
AGGGAAGATTCCATTGACAT+GGG + chr4_2:59671087-59671106 Msa0611450:CDS 40.0%
TTTATCTGACCCCATGTCAA+TGG - chr4_2:59671100-59671119 None:intergenic 40.0%
! TGCCACTTACTCATAAGGTA+TGG + chr4_2:59671125-59671144 Msa0611450:intron 40.0%
! TGTGGTTGATGTGGTATACA+AGG + chr4_2:59671334-59671353 Msa0611450:CDS 40.0%
! GTGGTTGATGTGGTATACAA+GGG + chr4_2:59671335-59671354 Msa0611450:CDS 40.0%
! TGATGGATGTTTCTGAACAG+TGG - chr4_2:59671507-59671526 None:intergenic 40.0%
GGTCAAAATTATGAGGAGCA+GGG - chr4_2:59671545-59671564 None:intergenic 40.0%
!! GGCATAAAAGTATTGGGCTT+TGG - chr4_2:59671707-59671726 None:intergenic 40.0%
! AATTTGGCTAGCTCATTTCC+TGG - chr4_2:59671755-59671774 None:intergenic 40.0%
! TCAAGATCAGAGTGCTCATT+TGG + chr4_2:59671882-59671901 Msa0611450:intron 40.0%
! AAGGTCTACCCACAAGATTT+TGG + chr4_2:59671988-59672007 Msa0611450:CDS 40.0%
AAATGAGATCAATGTTGGGG+TGG - chr4_2:59672086-59672105 None:intergenic 40.0%
GCCACCCTTTACAATAGAAT+AGG - chr4_2:59672203-59672222 None:intergenic 40.0%
GATGGAATATGGTTCAAGGC+AGG - chr4_2:59669349-59669368 None:intergenic 45.0%
CTGCGAAATCTTTGTGTGGA+TGG - chr4_2:59669367-59669386 None:intergenic 45.0%
!! AGCAACTTTGGAGTAGTTGC+AGG - chr4_2:59669402-59669421 None:intergenic 45.0%
GGAGAGATGAGAGAAAGATG+AGG - chr4_2:59669462-59669481 None:intergenic 45.0%
! ACCTGGAGGAAGTTTAGGTT+TGG - chr4_2:59669530-59669549 None:intergenic 45.0%
TGTGATGTTAACAAGTCCCG+AGG + chr4_2:59669784-59669803 Msa0611450:CDS 45.0%
AACACAAATCTTGCAGCCTC+GGG - chr4_2:59669803-59669822 None:intergenic 45.0%
CAACACAAATCTTGCAGCCT+CGG - chr4_2:59669804-59669823 None:intergenic 45.0%
GGCAGTTCTCTTTCAATGTC+GGG + chr4_2:59670394-59670413 Msa0611450:intron 45.0%
CCAAGTTACCAAAGACAGAG+AGG - chr4_2:59670422-59670441 None:intergenic 45.0%
! CCTCTCTGTCTTTGGTAACT+TGG + chr4_2:59670419-59670438 Msa0611450:CDS 45.0%
!! GCTTTGGAGTATGATGTTCC+GGG - chr4_2:59670522-59670541 None:intergenic 45.0%
GGAGCAGAGATTGAATGAGA+AGG + chr4_2:59670743-59670762 Msa0611450:CDS 45.0%
ACTGAGGGCCAATAAGGAAT+AGG - chr4_2:59670974-59670993 None:intergenic 45.0%
TGGAATCTTCCCTCCATCAT+TGG - chr4_2:59671080-59671099 None:intergenic 45.0%
GAGGGAAGATTCCATTGACA+TGG + chr4_2:59671086-59671105 Msa0611450:CDS 45.0%
GGGAAGATTCCATTGACATG+GGG + chr4_2:59671088-59671107 Msa0611450:CDS 45.0%
ATTCACGTTTAGGGAAGCTG+TGG + chr4_2:59671316-59671335 Msa0611450:CDS 45.0%
GGCATTACTTTCCAACCCTT+TGG - chr4_2:59671486-59671505 None:intergenic 45.0%
GGGTCAAAATTATGAGGAGC+AGG - chr4_2:59671546-59671565 None:intergenic 45.0%
ATATTTGTTTGGCAGGTGGG+AGG + chr4_2:59671914-59671933 Msa0611450:intron 45.0%
!! GAGGTAGTGGGATATCAAAG+TGG + chr4_2:59671933-59671952 Msa0611450:CDS 45.0%
!! GGATTGGGAATGGGCTATAT+TGG - chr4_2:59671962-59671981 None:intergenic 45.0%
GCCAAACCTAAACTTCCTCC+AGG + chr4_2:59669526-59669545 Msa0611450:CDS 50.0%
TTCCTCCAGGTTCATTGGGT+TGG + chr4_2:59669539-59669558 Msa0611450:CDS 50.0%
TAAGGCCAACCCAATGAACC+TGG - chr4_2:59669547-59669566 None:intergenic 50.0%
CGAGGCTGCAAGATTTGTGT+TGG + chr4_2:59669802-59669821 Msa0611450:CDS 50.0%
TGCGAGTGTGGTAATCTCCT+TGG - chr4_2:59669907-59669926 None:intergenic 50.0%
GAGATTACCACACTCGCATC+AGG + chr4_2:59669909-59669928 Msa0611450:CDS 50.0%
! TAGGGAAGCTGTGGTTGATG+TGG + chr4_2:59671325-59671344 Msa0611450:CDS 50.0%
TGAGGAGCAGGGTAGAATTC+TGG - chr4_2:59671534-59671553 None:intergenic 50.0%
GAGTGCACTCCATTGCCAAA+TGG - chr4_2:59671728-59671747 None:intergenic 50.0%
AATGGAGTGCACTCATGTCC+AGG + chr4_2:59671734-59671753 Msa0611450:CDS 50.0%
CTTGCTGAGGGATTGGGAAT+GGG - chr4_2:59671971-59671990 None:intergenic 50.0%
GTAGACCTTGCTGAGGGATT+GGG - chr4_2:59671977-59671996 None:intergenic 50.0%
TTGTGGGTAGACCTTGCTGA+GGG - chr4_2:59671983-59672002 None:intergenic 50.0%
AGATCAATGTTGGGGTGGCA+AGG - chr4_2:59672081-59672100 None:intergenic 50.0%
GGAGTAGTTGCAGGCGTAGA+AGG - chr4_2:59669393-59669412 None:intergenic 55.0%
CGAGTTTCCTGATGCGAGTG+TGG - chr4_2:59669919-59669938 None:intergenic 55.0%
GTCGGGATCCTCTCTGTCTT+TGG + chr4_2:59670411-59670430 Msa0611450:CDS 55.0%
TTTGGCAGGTGGGAGGTAGT+GGG + chr4_2:59671921-59671940 Msa0611450:intron 55.0%
CCTTGCTGAGGGATTGGGAA+TGG - chr4_2:59671972-59671991 None:intergenic 55.0%
CCATTCCCAATCCCTCAGCA+AGG + chr4_2:59671969-59671988 Msa0611450:CDS 55.0%
GGTAGACCTTGCTGAGGGAT+TGG - chr4_2:59671978-59671997 None:intergenic 55.0%
CTTGTGGGTAGACCTTGCTG+AGG - chr4_2:59671984-59672003 None:intergenic 55.0%
GGCCAACCCAATGAACCTGG+AGG - chr4_2:59669544-59669563 None:intergenic 60.0%
GTTTGGCAGGTGGGAGGTAG+TGG + chr4_2:59671920-59671939 Msa0611450:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 59669319 59672441 59669319 ID=Msa0611450;Name=Msa0611450
chr4_2 mRNA 59669319 59672441 59669319 ID=Msa0611450-mRNA-1;Parent=Msa0611450;Name=Msa0611450-mRNA-1;_AED=0.14;_eAED=0.14;_QI=111|1|1|1|0.77|0.6|10|394|471
chr4_2 exon 59669319 59669632 59669319 ID=Msa0611450-mRNA-1:exon:15841;Parent=Msa0611450-mRNA-1
chr4_2 exon 59669742 59670066 59669742 ID=Msa0611450-mRNA-1:exon:15842;Parent=Msa0611450-mRNA-1
chr4_2 exon 59670399 59670548 59670399 ID=Msa0611450-mRNA-1:exon:15843;Parent=Msa0611450-mRNA-1
chr4_2 exon 59670693 59670941 59670693 ID=Msa0611450-mRNA-1:exon:15844;Parent=Msa0611450-mRNA-1
chr4_2 exon 59671052 59671141 59671052 ID=Msa0611450-mRNA-1:exon:15845;Parent=Msa0611450-mRNA-1
chr4_2 exon 59671278 59671356 59671278 ID=Msa0611450-mRNA-1:exon:15846;Parent=Msa0611450-mRNA-1
chr4_2 exon 59671472 59671578 59671472 ID=Msa0611450-mRNA-1:exon:15847;Parent=Msa0611450-mRNA-1
chr4_2 exon 59671698 59671816 59671698 ID=Msa0611450-mRNA-1:exon:15848;Parent=Msa0611450-mRNA-1
chr4_2 exon 59671929 59672260 59671929 ID=Msa0611450-mRNA-1:exon:15849;Parent=Msa0611450-mRNA-1
chr4_2 exon 59672286 59672441 59672286 ID=Msa0611450-mRNA-1:exon:15850;Parent=Msa0611450-mRNA-1
chr4_2 five_prime_UTR 59669319 59669429 59669319 ID=Msa0611450-mRNA-1:five_prime_utr;Parent=Msa0611450-mRNA-1
chr4_2 CDS 59669430 59669632 59669430 ID=Msa0611450-mRNA-1:cds;Parent=Msa0611450-mRNA-1
chr4_2 CDS 59669742 59670066 59669742 ID=Msa0611450-mRNA-1:cds;Parent=Msa0611450-mRNA-1
chr4_2 CDS 59670399 59670548 59670399 ID=Msa0611450-mRNA-1:cds;Parent=Msa0611450-mRNA-1
chr4_2 CDS 59670693 59670941 59670693 ID=Msa0611450-mRNA-1:cds;Parent=Msa0611450-mRNA-1
chr4_2 CDS 59671052 59671141 59671052 ID=Msa0611450-mRNA-1:cds;Parent=Msa0611450-mRNA-1
chr4_2 CDS 59671278 59671356 59671278 ID=Msa0611450-mRNA-1:cds;Parent=Msa0611450-mRNA-1
chr4_2 CDS 59671472 59671578 59671472 ID=Msa0611450-mRNA-1:cds;Parent=Msa0611450-mRNA-1
chr4_2 CDS 59671698 59671816 59671698 ID=Msa0611450-mRNA-1:cds;Parent=Msa0611450-mRNA-1
chr4_2 CDS 59671929 59672022 59671929 ID=Msa0611450-mRNA-1:cds;Parent=Msa0611450-mRNA-1
chr4_2 three_prime_UTR 59672023 59672260 59672023 ID=Msa0611450-mRNA-1:three_prime_utr;Parent=Msa0611450-mRNA-1
chr4_2 three_prime_UTR 59672286 59672441 59672286 ID=Msa0611450-mRNA-1:three_prime_utr;Parent=Msa0611450-mRNA-1
Gene Sequence

>Msa0611450

ATGTATATGGACATTATTATTATCCTCTTCCTCATCTTTCTCTCATCTCTCCTCTCATATCCATTCATAAAGAAATTCAATAAACACGAAACCATAGCCAAACCTAAACTTCCTCCAGGTTCATTGGGTTGGCCTTATATAGGAGAAACTTTTCAACTTTACTCTCAACACCCTAACATCTTCTTTGCTTCTAAACAAAAAAGATACGGAGAAATATTTAAGACACACATATTAGGATGTCCATGTGTGATGTTAACAAGTCCCGAGGCTGCAAGATTTGTGTTGGTGACTCATTCTCATTTGTTTAAGCCTACATATCCCAAAAGCAAAGAAAAGCTTATTGGTTCTTCTGCATTATTCTTTCACCAAGGAGATTACCACACTCGCATCAGGAAACTCGTTCAAAACTCTCTTGCTCCTGAATCAATTAAGAAATTGATCCCTGATATTGAAAATGAAGTCATTTCCTCACTAGAATCCTGGGTTTTTATTGGACAAGTCATCAACGCTTTCCATGAAATGAAAAAGTTCTCTTTCAATGTCGGGATCCTCTCTGTCTTTGGTAACTTGGAAGCCAATTATAGAGAACAGCTTAAGGAGAATTACTGCATAGTAGAGAAAGGTTACAATTCTTTCCCAAATAAGATACCCGGAACATCATACTCCAAAGCTCTTTTGGCGAGGTGGCGAATTCAAGAGATTATAAGTGAGATAATTTGCAAGAGAAAGGAGCAGAGATTGAATGAGAAGGATCTATTAGGCCATTTGCTAAACTACAAGGATGAAAAAGGGAAAATGTTAACTGATAAGGAAGTTGCTGATAATGTCATTGGAGTACTATTTGCAGCTCAAGATACTACAGCTAGTGTTCTTACTTGGATTCTCAAGTATCTTCATGATGACCAGAAACTTCTTGAAGCCATAAAAGCTGAGCAAATGGCAGTATGTGATACCAATGATGGAGGGAAGATTCCATTGACATGGGGTCAGATAAAAAATATGCCACTTACTCATAAGGTAATATTGGAAAGCCTAAGGATGTCAAGCATCATATCATTCACGTTTAGGGAAGCTGTGGTTGATGTGGTATACAAGGGATATTTAATACCAAAGGGTTGGAAAGTAATGCCACTGTTCAGAAACATCCATCATAATCCAGAATTCTACCCTGCTCCTCATAATTTTGACCCATCAAGATTTGAGTTTGCTCCAAAGCCCAATACTTTTATGCCATTTGGCAATGGAGTGCACTCATGTCCAGGAAATGAGCTAGCCAAATTGAACATGTTGATTTTAATCCATCATCTAGTAACCAAATTTAGGTGGGAGGTAGTGGGATATCAAAGTGGAATCCAATATAGCCCATTCCCAATCCCTCAGCAAGGTCTACCCACAAGATTTTGGAGAATCAAATAG
Protein sequence

>Msa0611450

MYMDIIIILFLIFLSSLLSYPFIKKFNKHETIAKPKLPPGSLGWPYIGETFQLYSQHPNIFFASKQKRYGEIFKTHILGCPCVMLTSPEAARFVLVTHSHLFKPTYPKSKEKLIGSSALFFHQGDYHTRIRKLVQNSLAPESIKKLIPDIENEVISSLESWVFIGQVINAFHEMKKFSFNVGILSVFGNLEANYREQLKENYCIVEKGYNSFPNKIPGTSYSKALLARWRIQEIISEIICKRKEQRLNEKDLLGHLLNYKDEKGKMLTDKEVADNVIGVLFAAQDTTASVLTWILKYLHDDQKLLEAIKAEQMAVCDTNDGGKIPLTWGQIKNMPLTHKVILESLRMSSIISFTFREAVVDVVYKGYLIPKGWKVMPLFRNIHHNPEFYPAPHNFDPSRFEFAPKPNTFMPFGNGVHSCPGNELAKLNMLILIHHLVTKFRWEVVGYQSGIQYSPFPIPQQGLPTRFWRIK*