AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0426680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0426680 MtrunA17_Chr3g0128821 99.415 171 1 0 1 171 1 171 4.46e-127 353
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0426680 AT3G56290.1 60.920 174 62 2 1 170 1 172 5.25e-70 209

Find 64 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTCAAGAACATACATAAA+TGG 0.182001 3_2:-77128245 Msa0426680:exon
AAACGGAAACTATAATTCTT+TGG 0.229221 3_2:-77127102 Msa0426680:three_prime_UTR
TTCTTCCTTCTTCTCTTGTT+TGG 0.250102 3_2:+77128105 None:intergenic
ACAAAGTTCAAATTCATTCT+AGG 0.289101 3_2:-77128275 Msa0426680:five_prime_UTR
GGAAGTTCCCTTTGGCCATT+AGG 0.300224 3_2:-77127288 Msa0426680:three_prime_UTR
AACAAATGGAGAATTGATTC+AGG 0.315306 3_2:-77127238 Msa0426680:three_prime_UTR
TGTGGACTATGTGGCACCTT+AGG 0.339207 3_2:+77128450 None:intergenic
TAAGAATGCAACAGTTCATT+TGG 0.340491 3_2:+77127392 None:intergenic
GCTAGAGAAGCCACAAAATC+TGG 0.342436 3_2:-77127989 Msa0426680:CDS
TTTAGTAGAAGCAAAATTGT+AGG 0.344583 3_2:+77127143 None:intergenic
AACATGCAAGGTGTGCAAAA+AGG 0.352645 3_2:-77127620 Msa0426680:CDS
AACGGAAACTATAATTCTTT+GGG 0.352846 3_2:-77127101 Msa0426680:three_prime_UTR
CACTTGTCTTGCTTCACCCT+TGG 0.361736 3_2:+77127594 None:intergenic
CTTTATCATTATATCTTGTC+TGG 0.378103 3_2:-77127348 Msa0426680:three_prime_UTR
CAGACAAGATATAATGATAA+AGG 0.383938 3_2:+77127349 None:intergenic
TGTGCAGAGAAGGCAAAATC+TGG 0.391867 3_2:-77127541 Msa0426680:CDS
GGAGCTCTTAGAAGGAAAAT+TGG 0.394746 3_2:-77127848 Msa0426680:CDS
GAGAATATGTTGAAGAGGGT+TGG 0.421247 3_2:-77127651 Msa0426680:CDS
ATAGTTGTGTCTCAAACAAA+TGG 0.426309 3_2:-77127252 Msa0426680:three_prime_UTR
AGAATATGTTGAAGAGGGTT+GGG 0.437524 3_2:-77127650 Msa0426680:CDS
GCTCAAGAACATACATAAAT+GGG 0.443542 3_2:-77128244 Msa0426680:exon
CCATTGGTGGAAGTTCCCTT+TGG 0.444226 3_2:-77127296 Msa0426680:three_prime_UTR
CACTGTTGCCACTCACAACT+TGG 0.444238 3_2:+77128417 None:intergenic
TGCAGTATGGAGCTCTTAGA+AGG 0.445617 3_2:-77127856 Msa0426680:intron
TGAGCATCTTGTGCGGATCT+TGG 0.446163 3_2:+77128025 None:intergenic
AACATACATAAATGGGTCTT+GGG 0.452482 3_2:-77128237 Msa0426680:exon
GAACATACATAAATGGGTCT+TGG 0.457157 3_2:-77128238 Msa0426680:exon
GTGGACTATGTGGCACCTTA+GGG 0.458509 3_2:+77128451 None:intergenic
TTCAGCCAAACAAGAGAAGA+AGG 0.459242 3_2:-77128110 Msa0426680:CDS
ATAAAATTAAAATCACCTAA+TGG 0.470916 3_2:+77127273 None:intergenic
GTATAATAAGGAGGGGTCAA+TGG 0.496878 3_2:+77128208 None:intergenic
GAAAATTGGTGGGACTTACA+AGG 0.499480 3_2:-77127834 Msa0426680:CDS
GCAAGACAAGTGGACAAGCT+TGG 0.505588 3_2:-77127583 Msa0426680:CDS
TATAACATAACGTACAATAC+AGG 0.505989 3_2:-77128305 Msa0426680:five_prime_UTR
GGGCATCAAATTGTAGCCAC+AGG 0.511147 3_2:+77128372 None:intergenic
AATCTGGAGAACAAATGAGC+AGG 0.519508 3_2:-77127973 Msa0426680:CDS
CAAAGGGAACTTCCACCAAT+GGG 0.525664 3_2:+77127297 None:intergenic
AAAATCACCTAATGGCCAAA+GGG 0.529684 3_2:+77127281 None:intergenic
TGTTGCCACTCACAACTTGG+TGG 0.530474 3_2:+77128420 None:intergenic
CTCTTAGAAGGAAAATTGGT+GGG 0.533115 3_2:-77127844 Msa0426680:CDS
TGGTCATAAAGAGAAGAGTC+TGG 0.537908 3_2:+77127507 None:intergenic
AGAACAAATGAGCAGGGAGC+AGG 0.543107 3_2:-77127966 Msa0426680:intron
GGATGGAGAATATGTTGAAG+AGG 0.544093 3_2:-77127656 Msa0426680:CDS
CAACTTGGTGGTTAACATTG+TGG 0.549129 3_2:+77128432 None:intergenic
CCAAAGGGAACTTCCACCAA+TGG 0.558456 3_2:+77127296 None:intergenic
TCATGTAGCATGTGCAGAGA+AGG 0.566077 3_2:-77127551 Msa0426680:CDS
ATCAAATTGTAGCCACAGGT+TGG 0.571562 3_2:+77128376 None:intergenic
ATCTGGAGAACAAATGAGCA+GGG 0.576834 3_2:-77127972 Msa0426680:CDS
TAAAATCACCTAATGGCCAA+AGG 0.580336 3_2:+77127280 None:intergenic
AGATGCTCAGCTTATACAAG+AGG 0.596458 3_2:-77128011 Msa0426680:CDS
TCCACTACAATACCATGTCA+TGG 0.604222 3_2:+77127487 None:intergenic
GATGGAGAATATGTTGAAGA+GGG 0.605246 3_2:-77127655 Msa0426680:CDS
GCTCTTAGAAGGAAAATTGG+TGG 0.606049 3_2:-77127845 Msa0426680:CDS
AAAACTTGTATAATAAGGAG+GGG 0.613562 3_2:+77128201 None:intergenic
CAAGGGTGAAGCAAGACAAG+TGG 0.622923 3_2:-77127593 Msa0426680:CDS
GGTTAACATTGTGGACTATG+TGG 0.624904 3_2:+77128441 None:intergenic
ACCATGACATGGTATTGTAG+TGG 0.643236 3_2:-77127488 Msa0426680:three_prime_UTR
TTCTCTTTATGACCATGACA+TGG 0.643568 3_2:-77127499 Msa0426680:exon
GTTAACCACCAAGTTGTGAG+TGG 0.647087 3_2:-77128425 Msa0426680:five_prime_UTR
TTGGGTAGACAAAACATGCA+AGG 0.652458 3_2:-77127632 Msa0426680:CDS
TGTGAGTGGCAACAGTGCTG+TGG 0.655065 3_2:-77128411 Msa0426680:five_prime_UTR
TATAAGCTGAGCATCTTGTG+CGG 0.655921 3_2:+77128018 None:intergenic
AAGTTCAAATTCATTCTAGG+TGG 0.670611 3_2:-77128272 Msa0426680:five_prime_UTR
ACAAAATTAACACCAACCTG+TGG 0.731920 3_2:-77128388 Msa0426680:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATCCAATTTAAAAAAATT+AGG + chr3_2:77128368-77128387 None:intergenic 10.0%
!! TAATCCAATTTAAAAAAATT+AGG + chr3_2:77128368-77128387 None:intergenic 10.0%
!!! TTTTTTTAAATAATGCAGTA+TGG - chr3_2:77127673-77127692 Msa0426680:intron 15.0%
!!! GAATGAAATTTTAAAGTATA+TGG - chr3_2:77128112-77128131 Msa0426680:CDS 15.0%
!! AAGGAAAATAAAAATTTGTA+TGG + chr3_2:77128177-77128196 None:intergenic 15.0%
!! ATAAAATTAAAATCACCTAA+TGG + chr3_2:77128272-77128291 None:intergenic 15.0%
!!! TTGTCCTAATTTTTTTAAAT+TGG - chr3_2:77128361-77128380 Msa0426680:five_prime_UTR 15.0%
!!! TTTTTTTAAATAATGCAGTA+TGG - chr3_2:77127673-77127692 Msa0426680:intron 15.0%
!!! GAATGAAATTTTAAAGTATA+TGG - chr3_2:77128112-77128131 Msa0426680:CDS 15.0%
!! AAGGAAAATAAAAATTTGTA+TGG + chr3_2:77128177-77128196 None:intergenic 15.0%
!! ATAAAATTAAAATCACCTAA+TGG + chr3_2:77128272-77128291 None:intergenic 15.0%
!!! TTGTCCTAATTTTTTTAAAT+TGG - chr3_2:77128361-77128380 Msa0426680:five_prime_UTR 15.0%
!! AAAAACTTGTATAATAAGGA+GGG + chr3_2:77127345-77127364 None:intergenic 20.0%
!! GAAGAAAAACTTGTATAATA+AGG + chr3_2:77127349-77127368 None:intergenic 20.0%
!!! TTTTTCAAATCTTATGTTGA+AGG - chr3_2:77127733-77127752 Msa0426680:intron 20.0%
!!! AATTATAGGAGTATATTGTT+TGG - chr3_2:77127819-77127838 Msa0426680:CDS 20.0%
!!! ATCAGAATTTTAATCTGAAA+CGG - chr3_2:77128423-77128442 Msa0426680:five_prime_UTR 20.0%
!! AAAAACTTGTATAATAAGGA+GGG + chr3_2:77127345-77127364 None:intergenic 20.0%
!! GAAGAAAAACTTGTATAATA+AGG + chr3_2:77127349-77127368 None:intergenic 20.0%
!!! TTTTTCAAATCTTATGTTGA+AGG - chr3_2:77127733-77127752 Msa0426680:intron 20.0%
!!! AATTATAGGAGTATATTGTT+TGG - chr3_2:77127819-77127838 Msa0426680:CDS 20.0%
!!! ATCAGAATTTTAATCTGAAA+CGG - chr3_2:77128423-77128442 Msa0426680:five_prime_UTR 20.0%
!! TTCATTCTTTTCAGTATTTG+GGG + chr3_2:77127193-77127212 None:intergenic 25.0%
!! CTTCATTCTTTTCAGTATTT+GGG + chr3_2:77127194-77127213 None:intergenic 25.0%
! TATAACATAACGTACAATAC+AGG - chr3_2:77127237-77127256 Msa0426680:three_prime_UTR 25.0%
! ACAAAGTTCAAATTCATTCT+AGG - chr3_2:77127267-77127286 Msa0426680:three_prime_UTR 25.0%
! AAAACTTGTATAATAAGGAG+GGG + chr3_2:77127344-77127363 None:intergenic 25.0%
! GAAAAACTTGTATAATAAGG+AGG + chr3_2:77127346-77127365 None:intergenic 25.0%
!! CATGTGATTAGTTGAATTAT+AGG - chr3_2:77127805-77127824 Msa0426680:intron 25.0%
! CAGACAAGATATAATGATAA+AGG + chr3_2:77128196-77128215 None:intergenic 25.0%
! CTTTATCATTATATCTTGTC+TGG - chr3_2:77128194-77128213 Msa0426680:CDS 25.0%
! TTTAGTAGAAGCAAAATTGT+AGG + chr3_2:77128402-77128421 None:intergenic 25.0%
! AAACGGAAACTATAATTCTT+TGG - chr3_2:77128440-77128459 Msa0426680:five_prime_UTR 25.0%
! AACGGAAACTATAATTCTTT+GGG - chr3_2:77128441-77128460 Msa0426680:five_prime_UTR 25.0%
!! TTCATTCTTTTCAGTATTTG+GGG + chr3_2:77127193-77127212 None:intergenic 25.0%
!! CTTCATTCTTTTCAGTATTT+GGG + chr3_2:77127194-77127213 None:intergenic 25.0%
! TATAACATAACGTACAATAC+AGG - chr3_2:77127237-77127256 Msa0426680:three_prime_UTR 25.0%
! ACAAAGTTCAAATTCATTCT+AGG - chr3_2:77127267-77127286 Msa0426680:three_prime_UTR 25.0%
! AAAACTTGTATAATAAGGAG+GGG + chr3_2:77127344-77127363 None:intergenic 25.0%
! GAAAAACTTGTATAATAAGG+AGG + chr3_2:77127346-77127365 None:intergenic 25.0%
!! CATGTGATTAGTTGAATTAT+AGG - chr3_2:77127805-77127824 Msa0426680:intron 25.0%
! CAGACAAGATATAATGATAA+AGG + chr3_2:77128196-77128215 None:intergenic 25.0%
! CTTTATCATTATATCTTGTC+TGG - chr3_2:77128194-77128213 Msa0426680:CDS 25.0%
! TTTAGTAGAAGCAAAATTGT+AGG + chr3_2:77128402-77128421 None:intergenic 25.0%
! AAACGGAAACTATAATTCTT+TGG - chr3_2:77128440-77128459 Msa0426680:five_prime_UTR 25.0%
! AACGGAAACTATAATTCTTT+GGG - chr3_2:77128441-77128460 Msa0426680:five_prime_UTR 25.0%
! GCTTCATTCTTTTCAGTATT+TGG + chr3_2:77127195-77127214 None:intergenic 30.0%
AAGTTCAAATTCATTCTAGG+TGG - chr3_2:77127270-77127289 Msa0426680:three_prime_UTR 30.0%
TGCTCAAGAACATACATAAA+TGG - chr3_2:77127297-77127316 Msa0426680:three_prime_UTR 30.0%
GCTCAAGAACATACATAAAT+GGG - chr3_2:77127298-77127317 Msa0426680:three_prime_UTR 30.0%
AACATACATAAATGGGTCTT+GGG - chr3_2:77127305-77127324 Msa0426680:three_prime_UTR 30.0%
! AGTTTTTCTTCAAAGTCATC+AGG - chr3_2:77127358-77127377 Msa0426680:three_prime_UTR 30.0%
! GTATATGGTAGTTTTCTCTT+TGG - chr3_2:77128127-77128146 Msa0426680:CDS 30.0%
TAAGAATGCAACAGTTCATT+TGG + chr3_2:77128153-77128172 None:intergenic 30.0%
ATAGTTGTGTCTCAAACAAA+TGG - chr3_2:77128290-77128309 Msa0426680:five_prime_UTR 30.0%
! AACAAATGGAGAATTGATTC+AGG - chr3_2:77128304-77128323 Msa0426680:five_prime_UTR 30.0%
! GCTTCATTCTTTTCAGTATT+TGG + chr3_2:77127195-77127214 None:intergenic 30.0%
AAGTTCAAATTCATTCTAGG+TGG - chr3_2:77127270-77127289 Msa0426680:three_prime_UTR 30.0%
TGCTCAAGAACATACATAAA+TGG - chr3_2:77127297-77127316 Msa0426680:three_prime_UTR 30.0%
GCTCAAGAACATACATAAAT+GGG - chr3_2:77127298-77127317 Msa0426680:three_prime_UTR 30.0%
AACATACATAAATGGGTCTT+GGG - chr3_2:77127305-77127324 Msa0426680:three_prime_UTR 30.0%
! AGTTTTTCTTCAAAGTCATC+AGG - chr3_2:77127358-77127377 Msa0426680:three_prime_UTR 30.0%
! GTATATGGTAGTTTTCTCTT+TGG - chr3_2:77128127-77128146 Msa0426680:CDS 30.0%
TAAGAATGCAACAGTTCATT+TGG + chr3_2:77128153-77128172 None:intergenic 30.0%
ATAGTTGTGTCTCAAACAAA+TGG - chr3_2:77128290-77128309 Msa0426680:five_prime_UTR 30.0%
! AACAAATGGAGAATTGATTC+AGG - chr3_2:77128304-77128323 Msa0426680:five_prime_UTR 30.0%
ACAAAATTAACACCAACCTG+TGG - chr3_2:77127154-77127173 Msa0426680:three_prime_UTR 35.0%
GAACATACATAAATGGGTCT+TGG - chr3_2:77127304-77127323 Msa0426680:three_prime_UTR 35.0%
TTCTTCCTTCTTCTCTTGTT+TGG + chr3_2:77127440-77127459 None:intergenic 35.0%
! CATTTGTTCTCCAGATTTTG+TGG + chr3_2:77127566-77127585 None:intergenic 35.0%
CTCTTAGAAGGAAAATTGGT+GGG - chr3_2:77127698-77127717 Msa0426680:intron 35.0%
GATGGAGAATATGTTGAAGA+GGG - chr3_2:77127887-77127906 Msa0426680:intron 35.0%
AGAATATGTTGAAGAGGGTT+GGG - chr3_2:77127892-77127911 Msa0426680:intron 35.0%
TTCTCTTTATGACCATGACA+TGG - chr3_2:77128043-77128062 Msa0426680:CDS 35.0%
! TCTTGTCTGGTAGACTTTTT+AGG - chr3_2:77128207-77128226 Msa0426680:CDS 35.0%
! CTTGTCTGGTAGACTTTTTA+GGG - chr3_2:77128208-77128227 Msa0426680:CDS 35.0%
!!! GTGTTTTGTTTTGAACCCAT+TGG - chr3_2:77128230-77128249 Msa0426680:exon 35.0%
!!! TTTTGTTTTGAACCCATTGG+TGG - chr3_2:77128233-77128252 Msa0426680:exon 35.0%
AAAATCACCTAATGGCCAAA+GGG + chr3_2:77128264-77128283 None:intergenic 35.0%
TAAAATCACCTAATGGCCAA+AGG + chr3_2:77128265-77128284 None:intergenic 35.0%
ACAAAATTAACACCAACCTG+TGG - chr3_2:77127154-77127173 Msa0426680:three_prime_UTR 35.0%
GAACATACATAAATGGGTCT+TGG - chr3_2:77127304-77127323 Msa0426680:three_prime_UTR 35.0%
TTCTTCCTTCTTCTCTTGTT+TGG + chr3_2:77127440-77127459 None:intergenic 35.0%
! CATTTGTTCTCCAGATTTTG+TGG + chr3_2:77127566-77127585 None:intergenic 35.0%
CTCTTAGAAGGAAAATTGGT+GGG - chr3_2:77127698-77127717 Msa0426680:intron 35.0%
GATGGAGAATATGTTGAAGA+GGG - chr3_2:77127887-77127906 Msa0426680:intron 35.0%
AGAATATGTTGAAGAGGGTT+GGG - chr3_2:77127892-77127911 Msa0426680:intron 35.0%
TTCTCTTTATGACCATGACA+TGG - chr3_2:77128043-77128062 Msa0426680:CDS 35.0%
! TCTTGTCTGGTAGACTTTTT+AGG - chr3_2:77128207-77128226 Msa0426680:CDS 35.0%
! CTTGTCTGGTAGACTTTTTA+GGG - chr3_2:77128208-77128227 Msa0426680:CDS 35.0%
!!! GTGTTTTGTTTTGAACCCAT+TGG - chr3_2:77128230-77128249 Msa0426680:exon 35.0%
!!! TTTTGTTTTGAACCCATTGG+TGG - chr3_2:77128233-77128252 Msa0426680:exon 35.0%
AAAATCACCTAATGGCCAAA+GGG + chr3_2:77128264-77128283 None:intergenic 35.0%
TAAAATCACCTAATGGCCAA+AGG + chr3_2:77128265-77128284 None:intergenic 35.0%
! GGTTAACATTGTGGACTATG+TGG + chr3_2:77127104-77127123 None:intergenic 40.0%
! CAACTTGGTGGTTAACATTG+TGG + chr3_2:77127113-77127132 None:intergenic 40.0%
ATCAAATTGTAGCCACAGGT+TGG + chr3_2:77127169-77127188 None:intergenic 40.0%
GTATAATAAGGAGGGGTCAA+TGG + chr3_2:77127337-77127356 None:intergenic 40.0%
TTCAGCCAAACAAGAGAAGA+AGG - chr3_2:77127432-77127451 Msa0426680:three_prime_UTR 40.0%
TATAAGCTGAGCATCTTGTG+CGG + chr3_2:77127527-77127546 None:intergenic 40.0%
AGATGCTCAGCTTATACAAG+AGG - chr3_2:77127531-77127550 Msa0426680:CDS 40.0%
AATCTGGAGAACAAATGAGC+AGG - chr3_2:77127569-77127588 Msa0426680:CDS 40.0%
ATCTGGAGAACAAATGAGCA+GGG - chr3_2:77127570-77127589 Msa0426680:CDS 40.0%
GGAGCTCTTAGAAGGAAAAT+TGG - chr3_2:77127694-77127713 Msa0426680:intron 40.0%
GCTCTTAGAAGGAAAATTGG+TGG - chr3_2:77127697-77127716 Msa0426680:intron 40.0%
GAAAATTGGTGGGACTTACA+AGG - chr3_2:77127708-77127727 Msa0426680:intron 40.0%
! AATCTTGTTGTACTGAGCAG+TGG - chr3_2:77127865-77127884 Msa0426680:intron 40.0%
GGATGGAGAATATGTTGAAG+AGG - chr3_2:77127886-77127905 Msa0426680:intron 40.0%
GAGAATATGTTGAAGAGGGT+TGG - chr3_2:77127891-77127910 Msa0426680:intron 40.0%
TTGGGTAGACAAAACATGCA+AGG - chr3_2:77127910-77127929 Msa0426680:intron 40.0%
AACATGCAAGGTGTGCAAAA+AGG - chr3_2:77127922-77127941 Msa0426680:intron 40.0%
TGGTCATAAAGAGAAGAGTC+TGG + chr3_2:77128038-77128057 None:intergenic 40.0%
ACCATGACATGGTATTGTAG+TGG - chr3_2:77128054-77128073 Msa0426680:CDS 40.0%
TCCACTACAATACCATGTCA+TGG + chr3_2:77128058-77128077 None:intergenic 40.0%
! GGTTAACATTGTGGACTATG+TGG + chr3_2:77127104-77127123 None:intergenic 40.0%
! CAACTTGGTGGTTAACATTG+TGG + chr3_2:77127113-77127132 None:intergenic 40.0%
ATCAAATTGTAGCCACAGGT+TGG + chr3_2:77127169-77127188 None:intergenic 40.0%
GTATAATAAGGAGGGGTCAA+TGG + chr3_2:77127337-77127356 None:intergenic 40.0%
TTCAGCCAAACAAGAGAAGA+AGG - chr3_2:77127432-77127451 Msa0426680:three_prime_UTR 40.0%
TATAAGCTGAGCATCTTGTG+CGG + chr3_2:77127527-77127546 None:intergenic 40.0%
AGATGCTCAGCTTATACAAG+AGG - chr3_2:77127531-77127550 Msa0426680:CDS 40.0%
AATCTGGAGAACAAATGAGC+AGG - chr3_2:77127569-77127588 Msa0426680:CDS 40.0%
ATCTGGAGAACAAATGAGCA+GGG - chr3_2:77127570-77127589 Msa0426680:CDS 40.0%
GGAGCTCTTAGAAGGAAAAT+TGG - chr3_2:77127694-77127713 Msa0426680:intron 40.0%
GCTCTTAGAAGGAAAATTGG+TGG - chr3_2:77127697-77127716 Msa0426680:intron 40.0%
GAAAATTGGTGGGACTTACA+AGG - chr3_2:77127708-77127727 Msa0426680:intron 40.0%
! AATCTTGTTGTACTGAGCAG+TGG - chr3_2:77127865-77127884 Msa0426680:intron 40.0%
GGATGGAGAATATGTTGAAG+AGG - chr3_2:77127886-77127905 Msa0426680:intron 40.0%
GAGAATATGTTGAAGAGGGT+TGG - chr3_2:77127891-77127910 Msa0426680:intron 40.0%
TTGGGTAGACAAAACATGCA+AGG - chr3_2:77127910-77127929 Msa0426680:intron 40.0%
AACATGCAAGGTGTGCAAAA+AGG - chr3_2:77127922-77127941 Msa0426680:intron 40.0%
TGGTCATAAAGAGAAGAGTC+TGG + chr3_2:77128038-77128057 None:intergenic 40.0%
ACCATGACATGGTATTGTAG+TGG - chr3_2:77128054-77128073 Msa0426680:CDS 40.0%
TCCACTACAATACCATGTCA+TGG + chr3_2:77128058-77128077 None:intergenic 40.0%
GTTAACCACCAAGTTGTGAG+TGG - chr3_2:77127117-77127136 Msa0426680:three_prime_UTR 45.0%
GCTAGAGAAGCCACAAAATC+TGG - chr3_2:77127553-77127572 Msa0426680:CDS 45.0%
TGCAGTATGGAGCTCTTAGA+AGG - chr3_2:77127686-77127705 Msa0426680:intron 45.0%
TTGTTGTACTGAGCAGTGGA+TGG - chr3_2:77127869-77127888 Msa0426680:intron 45.0%
GTGTGCAAAAAGGACACCAA+GGG - chr3_2:77127932-77127951 Msa0426680:intron 45.0%
TCATGTAGCATGTGCAGAGA+AGG - chr3_2:77127991-77128010 Msa0426680:CDS 45.0%
TGTGCAGAGAAGGCAAAATC+TGG - chr3_2:77128001-77128020 Msa0426680:CDS 45.0%
CAAAGGGAACTTCCACCAAT+GGG + chr3_2:77128248-77128267 None:intergenic 45.0%
GTTAACCACCAAGTTGTGAG+TGG - chr3_2:77127117-77127136 Msa0426680:three_prime_UTR 45.0%
GCTAGAGAAGCCACAAAATC+TGG - chr3_2:77127553-77127572 Msa0426680:CDS 45.0%
TGCAGTATGGAGCTCTTAGA+AGG - chr3_2:77127686-77127705 Msa0426680:intron 45.0%
TTGTTGTACTGAGCAGTGGA+TGG - chr3_2:77127869-77127888 Msa0426680:intron 45.0%
GTGTGCAAAAAGGACACCAA+GGG - chr3_2:77127932-77127951 Msa0426680:intron 45.0%
TCATGTAGCATGTGCAGAGA+AGG - chr3_2:77127991-77128010 Msa0426680:CDS 45.0%
TGTGCAGAGAAGGCAAAATC+TGG - chr3_2:77128001-77128020 Msa0426680:CDS 45.0%
CAAAGGGAACTTCCACCAAT+GGG + chr3_2:77128248-77128267 None:intergenic 45.0%
! GTGGACTATGTGGCACCTTA+GGG + chr3_2:77127094-77127113 None:intergenic 50.0%
! TGTGGACTATGTGGCACCTT+AGG + chr3_2:77127095-77127114 None:intergenic 50.0%
TGTTGCCACTCACAACTTGG+TGG + chr3_2:77127125-77127144 None:intergenic 50.0%
CACTGTTGCCACTCACAACT+TGG + chr3_2:77127128-77127147 None:intergenic 50.0%
GGGCATCAAATTGTAGCCAC+AGG + chr3_2:77127173-77127192 None:intergenic 50.0%
TGAGCATCTTGTGCGGATCT+TGG + chr3_2:77127520-77127539 None:intergenic 50.0%
AGAACAAATGAGCAGGGAGC+AGG - chr3_2:77127576-77127595 Msa0426680:CDS 50.0%
GGTGTGCAAAAAGGACACCA+AGG - chr3_2:77127931-77127950 Msa0426680:intron 50.0%
CACTTGTCTTGCTTCACCCT+TGG + chr3_2:77127951-77127970 None:intergenic 50.0%
CAAGGGTGAAGCAAGACAAG+TGG - chr3_2:77127949-77127968 Msa0426680:intron 50.0%
GCAAGACAAGTGGACAAGCT+TGG - chr3_2:77127959-77127978 Msa0426680:intron 50.0%
CCAAAGGGAACTTCCACCAA+TGG + chr3_2:77128249-77128268 None:intergenic 50.0%
CCATTGGTGGAAGTTCCCTT+TGG - chr3_2:77128246-77128265 Msa0426680:exon 50.0%
GGAAGTTCCCTTTGGCCATT+AGG - chr3_2:77128254-77128273 Msa0426680:five_prime_UTR 50.0%
! GTGGACTATGTGGCACCTTA+GGG + chr3_2:77127094-77127113 None:intergenic 50.0%
! TGTGGACTATGTGGCACCTT+AGG + chr3_2:77127095-77127114 None:intergenic 50.0%
TGTTGCCACTCACAACTTGG+TGG + chr3_2:77127125-77127144 None:intergenic 50.0%
CACTGTTGCCACTCACAACT+TGG + chr3_2:77127128-77127147 None:intergenic 50.0%
GGGCATCAAATTGTAGCCAC+AGG + chr3_2:77127173-77127192 None:intergenic 50.0%
TGAGCATCTTGTGCGGATCT+TGG + chr3_2:77127520-77127539 None:intergenic 50.0%
AGAACAAATGAGCAGGGAGC+AGG - chr3_2:77127576-77127595 Msa0426680:CDS 50.0%
GGTGTGCAAAAAGGACACCA+AGG - chr3_2:77127931-77127950 Msa0426680:intron 50.0%
CACTTGTCTTGCTTCACCCT+TGG + chr3_2:77127951-77127970 None:intergenic 50.0%
CAAGGGTGAAGCAAGACAAG+TGG - chr3_2:77127949-77127968 Msa0426680:intron 50.0%
GCAAGACAAGTGGACAAGCT+TGG - chr3_2:77127959-77127978 Msa0426680:intron 50.0%
CCAAAGGGAACTTCCACCAA+TGG + chr3_2:77128249-77128268 None:intergenic 50.0%
CCATTGGTGGAAGTTCCCTT+TGG - chr3_2:77128246-77128265 Msa0426680:exon 50.0%
GGAAGTTCCCTTTGGCCATT+AGG - chr3_2:77128254-77128273 Msa0426680:five_prime_UTR 50.0%
TGTGAGTGGCAACAGTGCTG+TGG - chr3_2:77127131-77127150 Msa0426680:three_prime_UTR 55.0%
TGTGAGTGGCAACAGTGCTG+TGG - chr3_2:77127131-77127150 Msa0426680:three_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 77127091 77128473 77127091 ID=Msa0426680;Name=Msa0426680
chr3_2 mRNA 77127091 77128473 77127091 ID=Msa0426680-mRNA-1;Parent=Msa0426680;Name=Msa0426680-mRNA-1;_AED=0.04;_eAED=0.04;_QI=225|1|1|1|1|1|3|419|171
chr3_2 exon 77127091 77127679 77127091 ID=Msa0426680-mRNA-1:exon:20077;Parent=Msa0426680-mRNA-1
chr3_2 exon 77127810 77127873 77127810 ID=Msa0426680-mRNA-1:exon:20076;Parent=Msa0426680-mRNA-1
chr3_2 exon 77127967 77128473 77127967 ID=Msa0426680-mRNA-1:exon:20075;Parent=Msa0426680-mRNA-1
chr3_2 five_prime_UTR 77128249 77128473 77128249 ID=Msa0426680-mRNA-1:five_prime_utr;Parent=Msa0426680-mRNA-1
chr3_2 CDS 77127967 77128248 77127967 ID=Msa0426680-mRNA-1:cds;Parent=Msa0426680-mRNA-1
chr3_2 CDS 77127810 77127873 77127810 ID=Msa0426680-mRNA-1:cds;Parent=Msa0426680-mRNA-1
chr3_2 CDS 77127510 77127679 77127510 ID=Msa0426680-mRNA-1:cds;Parent=Msa0426680-mRNA-1
chr3_2 three_prime_UTR 77127091 77127509 77127091 ID=Msa0426680-mRNA-1:three_prime_utr;Parent=Msa0426680-mRNA-1
Gene Sequence

>Msa0426680

ATGGGTCTTGGGACTTTGCCATTGACCCCTCCTTATTATACAAGTTTTTCTTCAAAGTCATCAGGACTTGTACATAAAAATACTAATAATTGCAATAGAAGCAAAAAATTCATAGTTTCAGCCAAACAAGAGAAGAAGGAAGAAGATAAGAATAAGCAATCTTTTTTTACTAGTGTAACTGATGCTCTTGATTTTGCTCAACCAAGATCCGCACAAGATGCTCAGCTTATACAAGAGGCTAGAGAAGCCACAAAATCTGGAGAACAAATGAGCAGGGAGCAGTATGGAGCTCTTAGAAGGAAAATTGGTGGGACTTACAAGGATTTTTTCAAATCTTATGTTGAAGTGGATGGAGAATATGTTGAAGAGGGTTGGGTAGACAAAACATGCAAGGTGTGCAAAAAGGACACCAAGGGTGAAGCAAGACAAGTGGACAAGCTTGGAAGATATGTTCATGTAGCATGTGCAGAGAAGGCAAAATCTGGAAACTTCTTTACCAGACTCTTCTCTTTATGA

Protein sequence

>Msa0426680

MGLGTLPLTPPYYTSFSSKSSGLVHKNTNNCNRSKKFIVSAKQEKKEEDKNKQSFFTSVTDALDFAQPRSAQDAQLIQEAREATKSGEQMSREQYGALRRKIGGTYKDFFKSYVEVDGEYVEEGWVDKTCKVCKKDTKGEARQVDKLGRYVHVACAEKAKSGNFFTRLFSL*