AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0667800

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0667800 MtrunA17_Chr4g0006371 97.305 371 10 0 1 371 2 372 0.0 751
Msa0667800 MtrunA17_Chr7g0242551 76.694 369 77 1 2 370 4 363 0.0 605
Msa0667800 MtrunA17_Chr5g0437181 66.757 367 108 2 1 367 2 354 0.0 526
Msa0667800 MtrunA17_Chr3g0113641 63.115 366 121 2 6 371 8 359 4.28e-180 504
Msa0667800 MtrunA17_Chr8g0375601 37.883 359 208 3 9 367 7 350 3.22e-87 268
Msa0667800 MtrunA17_Chr8g0375671 36.842 361 205 5 10 367 15 355 3.33e-84 260
Msa0667800 MtrunA17_Chr5g0398291 38.710 341 196 4 12 349 7 337 1.96e-83 258
Msa0667800 MtrunA17_Chr8g0375571 38.602 329 185 2 13 341 11 322 8.98e-82 253
Msa0667800 MtrunA17_Chr2g0314391 35.933 359 203 4 13 367 36 371 2.49e-79 248
Msa0667800 MtrunA17_Chr3g0128001 40.426 329 171 5 22 349 13 317 7.46e-79 245
Msa0667800 MtrunA17_Chr5g0423251 34.819 359 213 4 13 371 13 350 1.68e-76 240
Msa0667800 MtrunA17_Chr5g0421011 35.574 357 208 4 1 356 1 336 1.92e-76 239
Msa0667800 MtrunA17_Chr3g0109041 36.785 367 200 8 11 368 8 351 2.07e-76 239
Msa0667800 MtrunA17_Chr7g0239111 39.450 327 182 4 31 349 18 336 2.63e-76 239
Msa0667800 MtrunA17_Chr2g0314401 36.915 363 194 6 13 367 17 352 6.41e-76 238
Msa0667800 MtrunA17_Chr8g0365241 35.015 337 199 4 13 349 23 339 1.51e-75 238
Msa0667800 MtrunA17_Chr5g0421041 34.000 350 208 4 13 362 13 339 1.56e-75 237
Msa0667800 MtrunA17_Chr5g0423191 33.978 362 218 3 1 362 1 341 3.59e-75 236
Msa0667800 MtrunA17_Chr2g0296371 36.441 354 206 4 13 365 17 352 3.72e-75 236
Msa0667800 MtrunA17_Chr7g0239821 34.637 358 214 4 9 366 25 362 8.51e-75 236
Msa0667800 MtrunA17_Chr2g0314381 34.551 356 213 5 13 367 42 378 2.32e-74 235
Msa0667800 MtrunA17_Chr7g0239101 35.569 343 197 4 9 349 16 336 2.57e-74 234
Msa0667800 MtrunA17_Chr5g0423221 33.787 367 223 4 1 367 25 371 3.63e-74 234
Msa0667800 MtrunA17_Chr8g0345831 39.039 333 179 7 19 349 13 323 4.47e-74 233
Msa0667800 MtrunA17_Chr5g0420951 33.613 357 214 5 13 367 18 353 6.68e-74 233
Msa0667800 MtrunA17_Chr5g0420981 35.015 337 200 4 13 349 18 335 8.14e-74 233
Msa0667800 MtrunA17_Chr5g0423201 34.140 372 223 5 1 371 1 351 2.66e-73 231
Msa0667800 MtrunA17_Chr8g0375701 38.961 308 178 4 61 367 55 353 3.12e-72 229
Msa0667800 MtrunA17_Chr1g0162191 37.383 321 183 3 21 341 20 322 1.01e-71 228
Msa0667800 MtrunA17_Chr7g0239121 35.465 344 205 6 31 365 14 349 1.36e-70 225
Msa0667800 MtrunA17_Chr5g0421101 34.018 341 204 4 1 341 1 320 7.07e-70 223
Msa0667800 MtrunA17_Chr5g0421091 33.828 337 203 3 13 349 11 327 7.65e-70 223
Msa0667800 MtrunA17_Chr5g0420941 34.718 337 199 4 13 349 11 326 2.67e-69 221
Msa0667800 MtrunA17_Chr1g0179801 35.734 361 208 8 13 366 27 370 3.30e-68 219
Msa0667800 MtrunA17_Chr3g0114861 35.569 343 196 5 10 350 3 322 3.63e-68 218
Msa0667800 MtrunA17_Chr7g0239071 40.074 272 160 1 94 365 29 297 1.23e-67 216
Msa0667800 MtrunA17_Chr2g0311921 36.188 362 196 10 13 365 19 354 3.06e-67 216
Msa0667800 MtrunA17_Chr2g0289341 35.370 311 189 5 60 368 3 303 1.03e-66 213
Msa0667800 MtrunA17_Chr5g0420901 34.770 348 203 5 13 357 12 338 1.34e-66 214
Msa0667800 MtrunA17_Chr8g0370711 37.153 288 177 2 57 344 48 331 1.54e-65 211
Msa0667800 MtrunA17_Chr6g0455481 37.353 340 185 7 22 358 17 331 4.45e-65 210
Msa0667800 MtrunA17_Chr5g0424201 36.232 345 194 8 10 349 3 326 5.01e-65 209
Msa0667800 MtrunA17_Chr3g0145171 35.764 288 181 2 57 344 48 331 5.46e-65 210
Msa0667800 MtrunA17_Chr7g0265221 33.889 360 207 9 21 366 35 377 6.60e-65 211
Msa0667800 MtrunA17_Chr2g0311831 35.574 357 204 8 13 365 33 367 8.24e-65 210
Msa0667800 MtrunA17_Chr5g0439011 35.144 313 189 5 59 367 3 305 1.43e-64 208
Msa0667800 MtrunA17_Chr3g0125201 38.762 307 166 8 59 356 1 294 2.23e-64 207
Msa0667800 MtrunA17_Chr8g0375681 38.043 276 168 1 96 371 15 287 2.68e-64 206
Msa0667800 MtrunA17_Chr5g0405411 38.908 293 170 6 61 350 39 325 4.30e-64 208
Msa0667800 MtrunA17_Chr8g0371921 35.652 345 197 9 9 350 3 325 2.42e-63 206
Msa0667800 MtrunA17_Chr1g0184151 34.593 344 192 9 19 356 10 326 8.74e-63 204
Msa0667800 MtrunA17_Chr5g0423211 33.724 341 199 7 13 349 13 330 8.77e-63 204
Msa0667800 MtrunA17_Chr3g0121141 34.304 309 191 5 60 367 3 300 9.09e-63 203
Msa0667800 MtrunA17_Chr4g0045411 38.344 326 171 9 60 367 29 342 1.20e-62 204
Msa0667800 MtrunA17_Chr5g0424211 34.731 334 192 8 10 338 3 315 1.52e-62 203
Msa0667800 MtrunA17_Chr1g0162361 38.199 322 171 9 61 367 27 335 2.58e-62 203
Msa0667800 MtrunA17_Chr1g0162351 33.871 372 196 10 20 367 43 388 3.53e-62 204
Msa0667800 MtrunA17_Chr2g0311761 33.152 368 221 7 4 367 24 370 1.06e-61 202
Msa0667800 MtrunA17_Chr1g0162321 33.871 372 196 10 20 367 43 388 1.08e-61 203
Msa0667800 MtrunA17_Chr8g0371931 35.826 321 197 6 33 350 11 325 1.45e-61 201
Msa0667800 MtrunA17_Chr8g0370721 36.806 288 178 2 57 344 48 331 1.76e-61 201
Msa0667800 MtrunA17_Chr8g0336781 35.692 325 195 7 47 364 78 395 1.76e-61 202
Msa0667800 MtrunA17_Chr6g0472861 35.884 379 196 11 4 364 19 368 1.85e-61 202
Msa0667800 MtrunA17_Chr7g0220011 34.808 339 194 7 22 358 14 327 3.25e-61 200
Msa0667800 MtrunA17_Chr4g0066121 36.306 314 184 8 47 352 43 348 4.10e-61 201
Msa0667800 MtrunA17_Chr4g0064781 36.332 289 176 2 53 341 42 322 4.83e-61 200
Msa0667800 MtrunA17_Chr5g0412671 36.364 341 192 7 14 349 5 325 6.16e-61 199
Msa0667800 MtrunA17_Chr8g0336851 35.077 325 196 6 47 364 43 359 9.73e-61 199
Msa0667800 MtrunA17_Chr3g0087031 33.526 346 199 6 10 349 21 341 1.81e-60 199
Msa0667800 MtrunA17_Chr7g0220001 33.819 343 202 5 22 363 16 334 2.14e-60 197
Msa0667800 MtrunA17_Chr4g0045441 38.462 325 175 9 61 367 26 343 2.37e-60 198
Msa0667800 MtrunA17_Chr5g0412651 35.693 339 197 6 14 349 5 325 5.57e-60 197
Msa0667800 MtrunA17_Chr5g0426891 34.012 344 201 10 10 349 1 322 1.06e-59 196
Msa0667800 MtrunA17_Chr7g0250511 34.897 341 199 7 15 353 16 335 1.35e-59 196
Msa0667800 MtrunA17_Chr5g0412681 37.201 293 169 5 60 349 32 312 2.75e-59 195
Msa0667800 MtrunA17_Chr1g0184121 34.132 334 192 7 19 348 9 318 3.22e-59 195
Msa0667800 MtrunA17_Chr8g0348081 34.663 326 196 7 47 364 43 359 5.09e-59 195
Msa0667800 MtrunA17_Chr3g0145181 34.628 309 191 5 57 361 45 346 6.15e-59 194
Msa0667800 MtrunA17_Chr4g0045451 38.387 310 167 9 61 352 26 329 7.38e-59 194
Msa0667800 MtrunA17_Chr8g0336751 33.889 360 200 8 13 362 59 390 8.07e-59 196
Msa0667800 MtrunA17_Chr1g0184161 33.918 342 197 8 19 356 10 326 1.28e-58 193
Msa0667800 MtrunA17_Chr8g0336761 34.049 326 198 7 47 364 43 359 1.64e-58 194
Msa0667800 MtrunA17_Chr7g0232161 34.828 290 169 4 13 302 25 294 1.66e-58 192
Msa0667800 MtrunA17_Chr4g0045431 37.217 309 170 9 61 351 26 328 5.42e-58 192
Msa0667800 MtrunA17_Chr8g0336631 33.436 326 201 6 47 364 43 360 5.50e-58 192
Msa0667800 MtrunA17_Chr4g0045471 37.846 325 178 10 61 367 26 344 6.12e-58 192
Msa0667800 MtrunA17_Chr7g0239091 35.831 307 180 5 60 366 159 448 2.24e-57 193
Msa0667800 MtrunA17_Chr2g0311861 35.294 357 185 10 13 365 29 343 2.92e-57 190
Msa0667800 MtrunA17_Chr1g0184101 35.522 335 171 9 19 340 9 311 7.92e-57 189
Msa0667800 MtrunA17_Chr2g0311701 31.233 365 222 7 6 362 26 369 9.25e-57 189
Msa0667800 MtrunA17_Chr3g0126741 31.871 342 211 7 10 349 20 341 1.62e-56 188
Msa0667800 MtrunA17_Chr8g0336861 34.451 328 198 8 47 365 43 362 3.02e-56 188
Msa0667800 MtrunA17_Chr1g0184111 33.333 336 194 8 19 349 9 319 6.95e-56 186
Msa0667800 MtrunA17_Chr3g0102041 36.207 290 177 5 61 348 39 322 8.29e-56 186
Msa0667800 MtrunA17_Chr5g0420721 36.585 246 153 1 120 365 4 246 1.39e-55 183
Msa0667800 MtrunA17_Chr7g0225881 33.514 370 210 9 13 371 28 372 1.73e-55 186
Msa0667800 MtrunA17_Chr6g0488511 37.906 277 156 7 61 333 3 267 1.98e-55 184
Msa0667800 MtrunA17_Chr1g0161041 35.440 364 208 9 2 362 49 388 5.40e-55 185
Msa0667800 MtrunA17_Chr3g0145201 34.628 309 191 5 57 361 680 981 1.52e-54 193
Msa0667800 MtrunA17_Chr2g0311691 32.123 358 214 8 8 357 22 358 1.70e-54 183
Msa0667800 MtrunA17_Chr2g0311681 31.285 358 217 7 8 357 22 358 1.44e-53 181
Msa0667800 MtrunA17_Chr1g0184241 32.948 346 207 6 13 357 34 355 2.53e-53 180
Msa0667800 MtrunA17_Chr8g0364471 29.839 372 225 9 4 365 24 369 3.48e-53 180
Msa0667800 MtrunA17_Chr4g0050031 33.791 364 208 10 9 362 19 359 5.41e-53 179
Msa0667800 MtrunA17_Chr1g0161081 34.844 353 203 10 13 362 37 365 1.43e-52 178
Msa0667800 MtrunA17_Chr3g0125421 33.429 350 190 9 14 348 5 326 1.88e-52 178
Msa0667800 MtrunA17_Chr2g0314371 32.024 331 181 8 10 317 14 323 2.03e-52 177
Msa0667800 MtrunA17_Chr3g0114871 35.034 294 168 5 8 299 2 274 5.75e-52 174
Msa0667800 MtrunA17_Chr1g0167951 31.250 368 210 7 4 360 11 346 3.75e-51 174
Msa0667800 MtrunA17_Chr2g0311741 33.007 306 194 7 54 357 20 316 3.92e-51 173
Msa0667800 MtrunA17_Chr1g0204181 34.385 317 179 6 59 355 57 364 4.33e-51 174
Msa0667800 MtrunA17_Chr6g0474391 31.805 349 197 7 23 355 42 365 4.77e-51 174
Msa0667800 MtrunA17_Chr8g0351101 30.678 339 199 5 19 346 28 341 9.94e-51 174
Msa0667800 MtrunA17_Chr1g0187811 30.000 370 235 9 4 365 136 489 1.49e-50 176
Msa0667800 MtrunA17_Chr2g0319491 33.651 315 189 7 38 350 10 306 5.27e-50 170
Msa0667800 MtrunA17_Chr8g0354261 32.641 337 196 8 13 341 33 346 6.24e-50 172
Msa0667800 MtrunA17_Chr7g0235951 30.556 360 220 9 13 365 33 369 7.97e-50 171
Msa0667800 MtrunA17_Chr8g0354241 30.278 360 222 8 13 365 33 370 8.38e-50 171
Msa0667800 MtrunA17_Chr4g0045461 37.037 324 180 10 61 367 26 342 1.98e-49 170
Msa0667800 MtrunA17_Chr1g0191201 31.288 326 205 4 54 368 46 363 2.16e-49 170
Msa0667800 MtrunA17_Chr1g0187831 29.810 369 233 9 4 365 21 370 4.36e-49 170
Msa0667800 MtrunA17_Chr2g0332191 33.651 315 188 8 44 349 31 333 4.56e-49 169
Msa0667800 MtrunA17_Chr1g0161111 33.807 352 206 10 13 361 96 423 5.38e-49 171
Msa0667800 MtrunA17_Chr3g0093761 31.268 355 219 9 13 365 18 349 9.19e-49 168
Msa0667800 MtrunA17_Chr8g0384461 31.731 312 198 5 53 356 39 343 2.13e-48 167
Msa0667800 MtrunA17_Chr2g0311711 31.198 359 221 9 4 357 22 359 2.33e-48 167
Msa0667800 MtrunA17_Chr1g0167961 30.748 361 223 7 6 362 28 365 2.04e-47 165
Msa0667800 MtrunA17_Chr7g0266651 32.190 379 219 11 2 370 13 363 3.03e-47 164
Msa0667800 MtrunA17_Chr1g0187821 30.623 369 225 10 4 364 20 365 4.43e-47 164
Msa0667800 MtrunA17_Chr3g0093751 30.899 356 220 10 13 365 18 350 8.30e-47 163
Msa0667800 MtrunA17_Chr1g0167911 30.663 362 223 8 4 362 11 347 8.79e-47 163
Msa0667800 MtrunA17_Chr3g0093741 30.337 356 222 9 13 365 18 350 1.75e-46 162
Msa0667800 MtrunA17_Chr2g0311631 31.124 347 202 9 13 349 22 341 1.17e-45 160
Msa0667800 MtrunA17_Chr3g0105281 34.106 302 162 10 61 354 34 306 1.90e-45 158
Msa0667800 MtrunA17_Chr7g0247991 31.044 364 215 10 4 357 24 361 1.97e-44 157
Msa0667800 MtrunA17_Chr3g0130391 33.887 301 170 6 62 346 67 354 2.66e-44 157
Msa0667800 MtrunA17_Chr4g0055591 29.700 367 214 9 13 367 25 359 3.68e-44 156
Msa0667800 MtrunA17_Chr7g0265351 33.227 313 185 11 60 365 38 333 4.68e-43 152
Msa0667800 MtrunA17_Chr8g0335411 29.589 365 221 10 11 365 31 369 6.53e-43 153
Msa0667800 MtrunA17_Chr1g0167931 28.846 364 195 8 4 364 11 313 6.84e-43 151
Msa0667800 MtrunA17_Chr4g0068891 32.215 298 179 7 61 350 20 302 2.53e-41 147
Msa0667800 MtrunA17_Chr7g0236011 28.889 360 226 8 13 365 33 369 6.52e-41 147
Msa0667800 MtrunA17_Chr4g0066991 28.532 361 206 8 13 365 33 349 1.14e-40 146
Msa0667800 MtrunA17_Chr1g0194321 32.792 308 180 8 59 350 18 314 2.29e-40 145
Msa0667800 MtrunA17_Chr4g0011311 31.560 282 163 9 13 290 33 288 5.31e-40 144
Msa0667800 MtrunA17_Chr8g0384481 30.841 321 202 8 58 368 56 366 7.44e-39 142
Msa0667800 MtrunA17_Chr2g0285931 30.667 300 185 8 61 350 28 314 1.73e-38 140
Msa0667800 MtrunA17_Chr1g0148771 28.435 313 204 7 19 329 25 319 2.76e-37 137
Msa0667800 MtrunA17_Chr8g0358941 29.180 305 184 8 61 350 27 314 3.69e-37 137
Msa0667800 MtrunA17_Chr7g0235981 32.000 275 173 4 99 367 59 325 5.80e-37 136
Msa0667800 MtrunA17_Chr4g0053251 31.438 299 159 12 60 328 7 289 1.15e-35 132
Msa0667800 MtrunA17_Chr5g0420881 44.697 132 72 1 226 356 1 132 8.84e-35 125
Msa0667800 MtrunA17_Chr3g0092531 32.342 269 172 6 61 328 6 265 1.10e-34 129
Msa0667800 MtrunA17_Chr4g0075471 45.669 127 67 1 225 349 28 154 7.88e-34 123
Msa0667800 MtrunA17_Chr2g0313111 27.410 332 199 11 30 350 6 306 3.46e-33 126
Msa0667800 MtrunA17_Chr4g0055871 30.164 305 184 11 58 349 6 294 2.91e-31 120
Msa0667800 MtrunA17_Chr3g0126761 38.953 172 102 3 178 349 44 212 6.71e-31 117
Msa0667800 MtrunA17_Chr4g0055911 29.677 310 184 11 58 349 6 299 1.11e-30 119
Msa0667800 MtrunA17_Chr5g0394071 39.326 178 94 5 179 354 3 168 1.61e-30 115
Msa0667800 MtrunA17_Chr8g0336801 40.141 142 81 2 226 364 11 151 1.69e-30 114
Msa0667800 MtrunA17_Chr8g0362741 29.286 280 157 8 13 290 33 273 5.97e-30 116
Msa0667800 MtrunA17_Chr4g0052251 28.623 276 184 8 84 350 43 314 8.63e-30 117
Msa0667800 MtrunA17_Chr7g0233661 45.038 131 65 2 224 354 19 142 1.27e-29 112
Msa0667800 MtrunA17_Chr8g0375661 32.749 171 97 2 10 178 15 169 4.82e-29 110
Msa0667800 MtrunA17_Chr8g0348951 27.852 298 195 8 59 349 8 292 8.50e-29 114
Msa0667800 MtrunA17_Chr8g0389941 28.223 287 179 9 84 349 51 331 9.51e-29 114
Msa0667800 MtrunA17_Chr4g0064771 29.876 241 115 5 101 341 1 187 2.17e-28 110
Msa0667800 MtrunA17_Chr8g0375641 30.994 171 100 2 10 178 15 169 6.59e-28 108
Msa0667800 MtrunA17_Chr2g0293931 37.079 178 103 5 181 350 10 186 1.09e-27 108
Msa0667800 MtrunA17_Chr6g0486831 29.333 300 171 12 79 349 33 320 2.75e-27 110
Msa0667800 MtrunA17_Chr1g0170631 34.444 180 111 3 178 355 3 177 2.89e-27 106
Msa0667800 MtrunA17_Chr4g0037611 40.881 159 81 5 198 354 11 158 6.48e-27 105
Msa0667800 MtrunA17_Chr5g0407731 30.333 300 175 11 61 351 33 307 3.00e-26 107
Msa0667800 MtrunA17_Chr8g0336871 36.842 171 95 4 189 356 1 161 5.85e-26 102
Msa0667800 MtrunA17_Chr7g0247741 27.365 296 194 8 61 349 11 292 5.90e-26 106
Msa0667800 MtrunA17_Chr5g0407781 26.871 294 193 8 60 350 4 278 8.52e-26 105
Msa0667800 MtrunA17_Chr8g0336831 30.457 197 130 3 51 246 50 240 1.26e-25 103
Msa0667800 MtrunA17_Chr4g0004061 29.870 308 188 10 61 356 9 300 2.65e-24 101
Msa0667800 MtrunA17_Chr1g0158011 32.642 193 124 5 159 348 51 240 2.15e-23 97.8
Msa0667800 MtrunA17_Chr4g0004071 28.383 303 198 9 61 356 9 299 5.08e-23 98.2
Msa0667800 MtrunA17_Chr8g0364171 42.735 117 59 3 176 290 16 126 1.97e-22 92.0
Msa0667800 MtrunA17_Chr1g0158021 28.685 251 164 8 36 282 22 261 2.80e-22 94.7
Msa0667800 MtrunA17_Chr8g0375581 60.317 63 25 0 224 286 23 85 2.36e-21 87.4
Msa0667800 MtrunA17_Chr3g0138351 23.659 317 202 11 57 352 3 300 1.43e-20 91.3
Msa0667800 MtrunA17_Chr1g0161101 49.505 101 40 3 221 320 401 491 1.62e-20 92.8
Msa0667800 MtrunA17_Chr7g0256741 27.333 300 199 10 61 354 10 296 5.59e-20 89.7
Msa0667800 MtrunA17_Chr5g0420891 27.711 166 102 2 13 178 12 159 1.84e-19 84.7
Msa0667800 MtrunA17_Chr4g0009541 23.913 322 214 12 61 367 7 312 1.91e-18 85.1
Msa0667800 MtrunA17_Chr1g0167921 40.000 115 57 3 179 289 50 156 5.22e-18 80.9
Msa0667800 MtrunA17_Chr1g0158031 32.727 165 103 5 190 351 3 162 1.95e-17 79.3
Msa0667800 MtrunA17_Chr4g0009561 24.522 314 204 11 57 352 3 301 3.48e-17 81.6
Msa0667800 MtrunA17_Chr8g0375591 31.746 126 73 1 13 138 11 123 1.11e-16 75.9
Msa0667800 MtrunA17_Chr3g0092581 31.655 139 91 3 190 328 3 137 1.70e-16 77.0
Msa0667800 MtrunA17_Chr7g0219991 37.736 106 62 1 180 285 250 351 3.82e-16 79.0
Msa0667800 MtrunA17_Chr2g0311611 44.444 72 32 2 226 290 1 71 4.04e-16 72.4
Msa0667800 MtrunA17_Chr8g0336791 27.972 143 99 2 51 192 50 189 2.49e-14 70.9
Msa0667800 MtrunA17_Chr8g0340641 24.254 268 189 4 78 331 83 350 1.80e-13 71.2
Msa0667800 MtrunA17_Chr2g0319521 33.043 115 69 3 178 290 16 124 2.40e-13 66.6
Msa0667800 MtrunA17_Chr1g0148781 24.390 287 187 11 82 353 34 305 5.16e-13 69.3
Msa0667800 MtrunA17_Chr4g0075431 27.564 156 103 3 61 216 4 149 5.81e-13 66.6
Msa0667800 MtrunA17_Chr7g0233671 32.520 123 74 4 61 180 41 157 3.36e-12 63.9
Msa0667800 MtrunA17_Chr1g0170641 28.571 168 97 6 18 182 18 165 3.38e-12 64.3
Msa0667800 MtrunA17_Chr5g0394081 32.381 105 67 2 56 157 32 135 3.97e-12 63.5
Msa0667800 MtrunA17_Chr3g0092571 41.892 74 40 2 61 133 6 77 9.32e-12 62.0
Msa0667800 MtrunA17_Chr7g0235991 27.632 152 104 3 57 207 17 163 1.33e-11 63.2
Msa0667800 MtrunA17_Chr8g0364161 26.761 142 88 3 13 153 33 159 1.91e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0667800 AT5G05600.1 63.361 363 119 2 6 368 20 368 2.61e-174 490
Msa0667800 AT3G11180.1 63.288 365 120 3 4 368 47 397 3.84e-174 491
Msa0667800 AT3G11180.2 63.559 354 115 3 4 357 47 386 1.92e-169 479
Msa0667800 AT3G55970.1 58.630 365 140 2 4 367 5 359 1.59e-162 459
Msa0667800 AT2G38240.1 60.055 363 128 3 6 368 5 350 8.44e-162 457
Msa0667800 AT5G05600.2 62.105 285 94 2 6 290 20 290 7.48e-130 374
Msa0667800 AT3G55970.2 58.681 288 108 2 4 290 5 282 4.49e-126 365
Msa0667800 AT4G22880.1 37.609 343 202 4 10 349 4 337 6.12e-81 251
Msa0667800 AT4G22880.2 37.609 343 202 4 10 349 4 337 6.12e-81 251
Msa0667800 AT4G22880.3 37.609 343 202 4 10 349 4 337 6.12e-81 251
Msa0667800 AT3G21420.1 37.360 356 206 6 13 365 17 358 1.69e-74 235
Msa0667800 AT1G17020.1 33.051 354 221 3 14 367 19 356 2.31e-73 232
Msa0667800 AT4G25300.1 32.486 354 222 4 14 367 18 354 2.02e-72 230
Msa0667800 AT4G10490.1 38.507 335 180 8 19 349 13 325 3.75e-72 229
Msa0667800 AT4G10500.1 39.024 328 177 7 24 349 20 326 8.75e-72 228
Msa0667800 AT4G16330.2 39.308 318 172 8 56 368 62 363 2.00e-70 225
Msa0667800 AT1G78550.1 31.452 372 228 6 1 365 1 352 1.18e-68 220
Msa0667800 AT1G17010.1 32.486 354 223 4 14 367 19 356 1.28e-68 220
Msa0667800 AT5G24530.1 35.542 332 186 6 22 349 13 320 8.83e-68 217
Msa0667800 AT4G25310.1 36.585 287 177 2 81 367 70 351 1.10e-65 212
Msa0667800 AT3G51240.1 36.686 338 190 7 22 357 13 328 2.25e-64 209
Msa0667800 AT2G36690.2 34.262 359 212 9 13 366 21 360 2.63e-64 209
Msa0667800 AT2G36690.1 34.262 359 212 9 13 366 21 360 2.63e-64 209
Msa0667800 AT5G08640.2 36.812 345 191 8 10 349 3 325 1.08e-63 206
Msa0667800 AT5G08640.1 36.812 345 191 8 10 349 3 325 1.08e-63 206
Msa0667800 AT1G12010.1 35.048 311 189 5 58 367 4 302 2.02e-63 205
Msa0667800 AT1G62380.1 35.880 301 178 7 58 356 4 291 1.57e-61 201
Msa0667800 AT5G54000.2 34.628 309 196 3 59 364 44 349 1.21e-60 199
Msa0667800 AT5G20400.1 35.336 283 180 2 59 341 43 322 3.40e-60 198
Msa0667800 AT5G43440.1 35.942 345 194 10 13 351 24 347 7.37e-60 197
Msa0667800 AT1G77330.1 36.842 304 175 5 59 356 1 293 1.23e-59 195
Msa0667800 AT1G49390.1 35.540 287 182 3 59 345 43 326 3.52e-59 195
Msa0667800 AT1G06620.1 35.227 352 196 10 13 357 27 353 4.06e-59 196
Msa0667800 AT5G20550.1 35.540 287 181 3 59 344 43 326 5.78e-59 195
Msa0667800 AT3G19000.1 37.845 362 193 12 21 367 1 345 3.80e-58 192
Msa0667800 AT3G13610.1 34.262 359 202 13 13 365 27 357 5.77e-58 192
Msa0667800 AT1G78550.2 32.967 273 180 1 93 365 5 274 6.31e-58 190
Msa0667800 AT4G16330.1 40.467 257 141 5 116 368 9 257 8.35e-58 189
Msa0667800 AT1G05010.1 34.076 314 191 7 60 367 3 306 1.60e-57 190
Msa0667800 AT1G06650.2 34.759 374 205 11 4 364 17 364 2.08e-57 191
Msa0667800 AT3G19010.1 33.529 340 200 9 45 367 10 340 1.73e-56 188
Msa0667800 AT3G19010.4 33.529 340 200 9 45 367 10 340 1.73e-56 188
Msa0667800 AT4G25420.1 34.030 335 193 7 22 349 38 351 2.51e-56 189
Msa0667800 AT1G06640.1 34.890 364 200 9 13 364 26 364 5.74e-56 187
Msa0667800 AT5G51810.1 32.941 340 196 7 22 354 40 354 3.69e-55 186
Msa0667800 AT3G60290.1 33.051 354 215 7 16 367 19 352 4.15e-55 185
Msa0667800 AT1G55290.1 32.778 360 207 12 13 365 26 357 2.03e-54 183
Msa0667800 AT2G19590.1 35.548 301 172 8 59 356 9 290 3.81e-54 181
Msa0667800 AT1G06645.1 34.392 378 198 12 4 364 30 374 2.01e-53 181
Msa0667800 AT1G03410.2 34.054 370 198 13 3 356 10 349 4.14e-53 180
Msa0667800 AT1G03410.1 33.973 365 205 12 3 356 47 386 4.69e-53 181
Msa0667800 AT5G54000.1 34.317 271 173 2 97 364 1 269 7.63e-53 176
Msa0667800 AT2G44800.1 33.141 347 206 9 13 355 16 340 3.47e-52 177
Msa0667800 AT2G30840.1 33.242 364 218 10 4 362 12 355 8.16e-52 176
Msa0667800 AT3G51240.2 40.244 246 138 5 114 357 6 244 3.41e-51 172
Msa0667800 AT1G49390.2 35.341 249 159 2 97 345 1 247 3.87e-51 172
Msa0667800 AT5G59530.1 32.044 362 216 9 13 367 24 362 5.01e-51 174
Msa0667800 AT5G43450.1 32.277 347 197 9 13 349 24 342 1.45e-50 173
Msa0667800 AT5G59540.1 31.548 336 208 8 45 367 38 364 3.11e-50 172
Msa0667800 AT1G04380.1 33.939 330 176 9 52 364 36 340 4.86e-50 171
Msa0667800 AT1G15550.1 35.314 303 175 10 60 357 56 342 2.05e-49 170
Msa0667800 AT5G07200.1 31.180 356 219 8 16 349 1 352 2.74e-49 170
Msa0667800 AT1G04350.1 31.233 365 221 9 4 362 13 353 2.80e-49 170
Msa0667800 AT3G12900.1 33.626 342 195 9 13 349 22 336 3.05e-49 169
Msa0667800 AT1G60980.1 32.915 319 184 5 24 332 36 334 1.37e-48 168
Msa0667800 AT2G30840.3 32.967 364 213 11 4 362 12 349 1.60e-48 167
Msa0667800 AT5G63600.1 31.447 318 199 7 32 349 11 309 1.94e-48 167
Msa0667800 AT5G63590.1 33.670 297 186 6 57 350 10 298 4.57e-48 165
Msa0667800 AT5G43440.2 35.816 282 159 8 13 292 24 285 6.51e-48 164
Msa0667800 AT4G21200.1 36.486 296 163 11 59 350 40 314 7.50e-48 166
Msa0667800 AT3G61400.1 32.133 361 215 10 6 356 18 358 9.02e-48 166
Msa0667800 AT5G63600.2 31.661 319 198 8 32 349 11 310 1.14e-47 164
Msa0667800 AT4G25310.2 31.707 287 163 2 81 367 70 323 1.40e-47 164
Msa0667800 AT3G19010.3 30.882 340 179 9 45 367 10 310 1.73e-46 161
Msa0667800 AT3G19000.2 38.947 285 143 11 21 290 1 269 6.62e-46 159
Msa0667800 AT2G30830.1 31.844 358 213 9 11 362 19 351 7.60e-46 160
Msa0667800 AT1G44090.1 32.895 304 195 5 58 355 60 360 9.08e-46 161
Msa0667800 AT1G03400.1 30.919 359 214 9 3 356 10 339 1.26e-45 160
Msa0667800 AT1G06620.2 35.484 279 157 8 13 290 27 283 1.22e-44 155
Msa0667800 AT1G80330.1 31.176 340 203 8 20 349 15 333 4.16e-44 156
Msa0667800 AT2G19590.2 34.686 271 158 7 89 356 21 275 4.84e-44 154
Msa0667800 AT5G07480.1 30.612 343 208 8 18 353 18 337 6.61e-44 155
Msa0667800 AT1G06650.1 34.899 298 165 8 4 295 17 291 6.66e-43 152
Msa0667800 AT1G06640.2 34.589 292 164 6 4 290 17 286 1.05e-41 149
Msa0667800 AT1G80340.1 33.446 296 177 9 60 349 49 330 1.55e-41 149
Msa0667800 AT1G06640.3 35.484 279 153 6 13 286 26 282 2.31e-41 147
Msa0667800 AT5G63595.1 32.000 275 155 5 56 326 16 262 2.92e-41 146
Msa0667800 AT5G12270.1 30.532 357 211 10 20 367 29 357 4.95e-41 148
Msa0667800 AT5G51810.2 32.509 283 159 6 22 297 40 297 9.35e-41 145
Msa0667800 AT3G19010.2 34.959 246 137 7 61 291 28 265 1.08e-40 145
Msa0667800 AT4G25300.2 36.126 191 120 1 177 367 72 260 1.36e-40 144
Msa0667800 AT2G25450.1 30.319 376 220 11 4 367 12 357 2.17e-40 146
Msa0667800 AT4G25420.2 32.609 276 158 7 22 290 38 292 2.84e-40 144
Msa0667800 AT1G50960.1 30.312 320 199 6 31 350 20 315 3.47e-40 145
Msa0667800 AT1G03400.2 29.199 387 212 10 3 356 10 367 3.57e-40 146
Msa0667800 AT1G78440.1 31.788 302 178 9 61 350 18 303 6.55e-40 144
Msa0667800 AT2G30840.2 33.333 288 170 7 4 289 12 279 6.69e-40 144
Msa0667800 AT3G50210.4 33.219 292 169 10 60 328 7 295 7.23e-40 144
Msa0667800 AT3G50210.1 33.219 292 169 10 60 328 7 295 7.23e-40 144
Msa0667800 AT3G50210.3 33.219 292 169 10 60 328 7 295 7.23e-40 144
Msa0667800 AT4G21690.1 32.226 301 177 10 61 349 47 332 3.27e-39 143
Msa0667800 AT5G63580.2 38.627 233 131 6 60 290 18 240 4.43e-39 139
Msa0667800 AT1G30040.1 30.303 297 188 8 60 350 30 313 1.06e-38 141
Msa0667800 AT5G63580.1 38.528 231 130 6 60 288 18 238 1.71e-38 138
Msa0667800 AT5G43450.2 32.394 284 157 8 13 289 24 279 2.52e-38 139
Msa0667800 AT1G04380.2 35.039 254 128 7 52 292 36 265 3.72e-38 138
Msa0667800 AT5G43935.1 30.743 296 166 7 61 349 19 282 4.90e-38 138
Msa0667800 AT3G61400.2 32.646 291 170 8 6 290 18 288 1.61e-37 137
Msa0667800 AT5G59540.2 30.605 281 171 8 13 290 25 284 6.87e-37 135
Msa0667800 AT2G34555.1 29.054 296 192 8 61 351 27 309 1.56e-36 135
Msa0667800 AT3G49630.1 30.640 297 163 10 61 328 9 291 2.20e-35 132
Msa0667800 AT3G49620.1 32.180 289 169 9 61 328 34 316 2.22e-35 133
Msa0667800 AT3G49630.3 31.250 272 151 8 79 328 30 287 3.03e-35 132
Msa0667800 AT5G58660.1 31.023 303 159 11 58 329 31 314 2.09e-32 125
Msa0667800 AT1G02400.1 29.866 298 192 9 60 350 23 310 4.61e-30 118
Msa0667800 AT3G47190.1 28.889 315 179 13 56 354 27 312 8.04e-30 117
Msa0667800 AT1G47990.1 29.316 307 181 10 60 350 14 300 1.10e-29 117
Msa0667800 AT4G23340.1 29.904 311 177 10 56 349 5 291 8.30e-28 112
Msa0667800 AT1G30040.2 30.380 237 146 8 60 290 30 253 2.45e-26 106
Msa0667800 AT3G46500.5 28.115 313 199 11 53 349 6 308 3.47e-26 107
Msa0667800 AT5G07480.2 33.333 201 124 4 155 349 28 224 1.25e-25 103
Msa0667800 AT5G58660.2 30.855 269 135 11 58 296 31 278 2.15e-25 104
Msa0667800 AT1G28030.1 28.846 312 173 10 59 346 11 297 3.59e-24 101
Msa0667800 AT1G14130.1 28.105 306 194 7 57 356 5 290 5.87e-24 100
Msa0667800 AT3G50210.2 34.545 165 101 3 169 328 51 213 7.98e-24 99.4
Msa0667800 AT5G51310.1 29.032 279 164 10 58 318 2 264 3.82e-23 99.0
Msa0667800 AT3G46490.1 26.132 287 186 7 84 349 34 315 1.29e-22 97.4
Msa0667800 AT3G49630.2 32.386 176 95 4 164 328 56 218 1.35e-22 96.3
Msa0667800 AT4G16765.6 32.000 225 137 9 137 349 15 235 5.61e-22 94.0
Msa0667800 AT4G16765.1 32.000 225 137 9 137 349 15 235 5.61e-22 94.0
Msa0667800 AT4G16765.2 32.000 225 137 9 137 349 15 235 5.61e-22 94.0
Msa0667800 AT4G03070.1 26.708 322 190 11 58 357 11 308 2.07e-21 94.0
Msa0667800 AT1G52820.1 25.079 315 199 9 59 357 10 303 2.52e-21 93.6
Msa0667800 AT3G46500.7 27.817 284 179 11 53 320 6 279 3.13e-20 90.1
Msa0667800 AT1G02400.2 29.249 253 163 8 60 306 23 265 3.84e-20 89.4
Msa0667800 AT1G14120.2 26.578 301 175 8 61 345 8 278 7.34e-20 89.4
Msa0667800 AT1G14120.1 26.578 301 175 8 61 345 8 278 7.34e-20 89.4
Msa0667800 AT1G14120.3 26.578 301 175 8 61 345 8 278 7.34e-20 89.4
Msa0667800 AT4G16765.3 32.258 217 131 9 137 341 15 227 7.62e-20 87.8
Msa0667800 AT3G46490.2 25.448 279 182 7 84 341 34 307 4.09e-19 87.4
Msa0667800 AT4G22870.1 42.391 92 52 1 259 349 2 93 5.29e-19 82.0
Msa0667800 AT4G23340.2 32.768 177 107 7 181 349 1 173 6.11e-18 82.0
Msa0667800 AT1G35190.1 27.129 317 198 12 57 349 3 310 8.09e-18 84.0
Msa0667800 AT4G22870.2 38.614 101 56 3 254 349 35 134 1.07e-17 79.7
Msa0667800 AT3G46500.10 29.255 188 118 6 171 349 53 234 2.50e-16 78.2
Msa0667800 AT3G46500.1 29.255 188 118 6 171 349 53 234 2.50e-16 78.2
Msa0667800 AT3G46500.4 30.337 178 109 6 181 349 1 172 3.69e-16 76.6
Msa0667800 AT1G52800.1 25.839 298 187 11 61 344 10 287 5.32e-16 78.6
Msa0667800 AT4G16765.5 35.897 117 68 3 238 349 75 189 1.28e-14 72.4
Msa0667800 AT4G16765.4 32.948 173 101 8 137 297 15 184 1.32e-13 68.9
Msa0667800 AT4G03050.2 38.053 113 67 3 236 346 271 382 4.51e-13 70.5
Msa0667800 AT4G03050.1 38.053 113 67 3 236 346 271 382 4.51e-13 70.5
Msa0667800 AT1G35190.2 34.783 115 68 3 240 349 175 287 7.23e-13 68.9
Msa0667800 AT4G16770.1 28.750 240 146 10 59 283 20 249 9.12e-13 68.2
Msa0667800 AT2G06960.1 34.586 133 72 4 226 358 30 147 1.58e-12 65.1
Msa0667800 AT1G52820.2 24.074 270 159 10 59 312 10 249 1.61e-11 64.3
Msa0667800 AT3G46500.9 34.694 98 58 2 257 349 114 210 1.94e-11 63.9
Msa0667800 AT1G80320.1 23.077 273 195 7 80 347 29 291 2.39e-11 64.7
Msa0667800 AT4G21200.3 34.343 99 60 3 59 155 40 135 5.38e-11 61.6
Msa0667800 AT3G46500.3 29.560 159 97 6 171 320 53 205 8.69e-11 61.6

Find 141 sgRNAs with CRISPR-Local

Find 410 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCCTTCCTACTTCTTTA+AGG 0.126900 4_4:-8405528 Msa0667800:intron
CTTCCTGATGATTATGTATC+TGG 0.173498 4_4:-8401949 Msa0667800:CDS
TTAAGTAAATGTGTTCAATT+TGG 0.185735 4_4:-8400799 Msa0667800:three_prime_UTR
TCATTCTTGGATATAAATAT+TGG 0.227326 4_4:+8400755 None:intergenic
AAATTAATAGAAATCACTTT+TGG 0.253793 4_4:+8400867 None:intergenic
GTGGTAGGTCTTTGGGATTT+TGG 0.254056 4_4:+8405949 None:intergenic
GAAAGGCTCAAATGTAAAAT+TGG 0.259472 4_4:+8400489 None:intergenic
GACATGTGTAAGTTCATTCT+TGG 0.276050 4_4:+8400742 None:intergenic
AGTTTGTTGTGGTAGGTCTT+TGG 0.285008 4_4:+8405941 None:intergenic
GCGTTTGTGGCTTCTTGTTA+TGG 0.286037 4_4:+8406224 None:intergenic
ATTGATTTACAACACTTATA+TGG 0.297278 4_4:-8405850 Msa0667800:CDS
TATTTATATATAAATAATTT+CGG 0.301676 4_4:+8400530 None:intergenic
AATGCTTTCATCATCAATAT+TGG 0.311345 4_4:-8401877 Msa0667800:CDS
TAAGTAAATGTGTTCAATTT+GGG 0.312203 4_4:-8400798 Msa0667800:three_prime_UTR
GTTTGTTGTGGTAGGTCTTT+GGG 0.314449 4_4:+8405942 None:intergenic
TTAGAAGGAAATCATCATTA+AGG 0.319095 4_4:+8402097 None:intergenic
TGAGGGATATGGAAGTCGTT+TGG 0.332183 4_4:-8405638 Msa0667800:CDS
CGTTTGTGGCTTCTTGTTAT+GGG 0.332449 4_4:+8406225 None:intergenic
AAAAGCTCAAGTAGAATCTT+TGG 0.333416 4_4:-8400894 Msa0667800:CDS
CACCACCAAATGCATTTAGA+AGG 0.334426 4_4:+8402082 None:intergenic
CCTACCACTTATGAGGGATA+TGG 0.341811 4_4:-8405649 Msa0667800:CDS
CATGAACATGATGAAAAGTT+TGG 0.347353 4_4:+8405908 None:intergenic
ATGAATATAGAGTTTACATT+AGG 0.355544 4_4:-8400934 Msa0667800:CDS
CAATATTGGTGACCAAATTC+AGG 0.356396 4_4:-8401863 Msa0667800:intron
GGTGAAGAAGTTGTTAAGTT+AGG 0.358232 4_4:-8402156 Msa0667800:CDS
TCTTTGACCTTGAATTGATA+AGG 0.358296 4_4:+8400670 None:intergenic
CTTTGACCTTGAATTGATAA+GGG 0.359696 4_4:+8400671 None:intergenic
AAGTGTTGTAAATCAATAAC+TGG 0.375108 4_4:+8405856 None:intergenic
ATGATCTTGGTGGTTGCTTA+AGG 0.375907 4_4:-8402056 Msa0667800:CDS
CAACAAAGATAGAGTTTCAT+TGG 0.387408 4_4:-8401053 Msa0667800:CDS
ATAAATAGGGGACCTGAATT+TGG 0.388049 4_4:+8401851 None:intergenic
GAGGGATATGGAAGTCGTTT+GGG 0.388962 4_4:-8405637 Msa0667800:CDS
ATATTGATGATGAAAGCATT+TGG 0.390462 4_4:+8401880 None:intergenic
AGAGTTTACATTAGGACAAA+AGG 0.392282 4_4:-8400926 Msa0667800:CDS
GAGTTATTGTCAATTAATCT+TGG 0.393076 4_4:-8402120 Msa0667800:CDS
GATTTCCTTCTAAATGCATT+TGG 0.403026 4_4:-8402087 Msa0667800:CDS
GAAGGGAAGGCCACTTGGTT+TGG 0.403259 4_4:+8405542 None:intergenic
AGGAATGTGATCAATGAATA+TGG 0.403431 4_4:-8402177 Msa0667800:CDS
TCATCAATAGTGTGGAACTA+TGG 0.408817 4_4:-8400618 Msa0667800:three_prime_UTR
CGTCTAAGTGAGTGCGTTTG+TGG 0.411975 4_4:+8406211 None:intergenic
TATTGATGATGAAAGCATTT+GGG 0.412112 4_4:+8401881 None:intergenic
TGTTGTACTTATCTCAAACT+TGG 0.414568 4_4:-8400698 Msa0667800:three_prime_UTR
GCCCTGAGCATGGGCAGAAG+GGG 0.415685 4_4:-8400584 Msa0667800:three_prime_UTR
TCATGAAAATTGATTGAATA+GGG 0.419069 4_4:-8400381 Msa0667800:three_prime_UTR
CTCTCCTCTCACTCTGACCC+TGG 0.421129 4_4:-8401988 Msa0667800:CDS
TGCTACTTTCAGCTAAGGCT+TGG 0.423040 4_4:+8406001 None:intergenic
ATTACATGCCTTGTTCACTT+AGG 0.425563 4_4:-8405567 Msa0667800:CDS
CTCGGAGGCGTGTAGAGAAT+GGG 0.426802 4_4:-8405788 Msa0667800:CDS
TAATTCTCCTACCACTTATG+AGG 0.428888 4_4:-8405656 Msa0667800:CDS
AAATAAAAGAGATATATTAC+TGG 0.432394 4_4:+8406128 None:intergenic
TAACTCCATGGTTTAAAACT+TGG 0.434708 4_4:+8405758 None:intergenic
TTACATGCCTTGTTCACTTA+GGG 0.435159 4_4:-8405566 Msa0667800:CDS
TCTCGGAGGCGTGTAGAGAA+TGG 0.440065 4_4:-8405789 Msa0667800:CDS
GTAGTCACTCCAATCCAAAA+TGG 0.440186 4_4:+8405600 None:intergenic
GGGTTGCCCTTATCAATTCA+AGG 0.445493 4_4:-8400677 Msa0667800:three_prime_UTR
AGCAGAGGTGGCCCTGAGCA+TGG 0.447373 4_4:-8400594 Msa0667800:three_prime_UTR
TGAAACGTGCTAGGGAGGTT+TGG 0.452781 4_4:-8405723 Msa0667800:CDS
CCTCAACCTGATCTCACTCT+TGG 0.455868 4_4:-8402012 Msa0667800:CDS
CAATGAAACTCTATCTTTGT+TGG 0.456034 4_4:+8401054 None:intergenic
TGGCCCTGAGCATGGGCAGA+AGG 0.458334 4_4:-8400586 Msa0667800:three_prime_UTR
TGATCTTGGTGGTTGCTTAA+GGG 0.462816 4_4:-8402055 Msa0667800:CDS
TGAATTAGTAAATCACTCCT+TGG 0.462982 4_4:+8401016 None:intergenic
CTATATTCATCAAATGTCAT+TGG 0.464642 4_4:+8400947 None:intergenic
CTCATGAAAATTGATTGAAT+AGG 0.465709 4_4:-8400382 Msa0667800:three_prime_UTR
GTTGTACTTATCTCAAACTT+GGG 0.467463 4_4:-8400697 Msa0667800:three_prime_UTR
TTCATGAGATCTGAAATAGT+TGG 0.468572 4_4:+8400397 None:intergenic
TTAGTGACAAGTTCCTTAGC+AGG 0.472035 4_4:+8400992 None:intergenic
GGCCCTGAGCATGGGCAGAA+GGG 0.475406 4_4:-8400585 Msa0667800:three_prime_UTR
TTCCTGATGATTATGTATCT+GGG 0.477825 4_4:-8401948 Msa0667800:CDS
TTGGTTTGATGAAACGTTGA+GGG 0.484592 4_4:+8405968 None:intergenic
TGGACTCGAATCACTGGCTC+TGG 0.488165 4_4:+8406021 None:intergenic
AGCCCAGATACATAATCATC+AGG 0.492591 4_4:+8401946 None:intergenic
GAGAGACCAAGAGTGAGATC+AGG 0.493286 4_4:+8402006 None:intergenic
GAAGAAGTTGTTAAGTTAGG+AGG 0.494444 4_4:-8402153 Msa0667800:CDS
GAGTTTACATTAGGACAAAA+GGG 0.496768 4_4:-8400925 Msa0667800:CDS
ATGATGAAAGCATTTGGGAC+AGG 0.497595 4_4:+8401886 None:intergenic
TTTGGTGGTGAAAATGATCT+TGG 0.500815 4_4:-8402069 Msa0667800:CDS
AGTAGAATGGTCAAACCACC+AGG 0.503409 4_4:+8401970 None:intergenic
TTTACTAATTCAACCTGCTA+AGG 0.508354 4_4:-8401005 Msa0667800:CDS
GCAGAGGTGGCCCTGAGCAT+GGG 0.512842 4_4:-8400593 Msa0667800:three_prime_UTR
AAGTACGTAGAGGAGAAGAT+TGG 0.512998 4_4:-8401921 Msa0667800:CDS
TGCTAAGGAACTTGTCACTA+AGG 0.514674 4_4:-8400990 Msa0667800:CDS
AGATCAGGTTGAGGACACTT+TGG 0.516890 4_4:+8402021 None:intergenic
GCTTATGCTACTTTCAGCTA+AGG 0.527593 4_4:+8405996 None:intergenic
AAAATAAGATATATTATTGG+AGG 0.528899 4_4:+8406161 None:intergenic
ACCACCAGGGTCAGAGTGAG+AGG 0.529404 4_4:+8401984 None:intergenic
AGTAGGAAGGGAAGGCCACT+TGG 0.530640 4_4:+8405537 None:intergenic
ACTCCTTGGATTATAAAAGA+AGG 0.532984 4_4:+8401030 None:intergenic
GTGAGAGAGTTTGTTGTGGT+AGG 0.533061 4_4:+8405934 None:intergenic
AAGGCTTGGACTCGAATCAC+TGG 0.536719 4_4:+8406015 None:intergenic
CCCTGAGCATGGGCAGAAGG+GGG 0.538320 4_4:-8400583 Msa0667800:three_prime_UTR
AGTACCTTAAAGAAGTAGGA+AGG 0.539351 4_4:+8405524 None:intergenic
GTACCTTAAAGAAGTAGGAA+GGG 0.540764 4_4:+8405525 None:intergenic
TATTCATCAAATGTCATTGG+TGG 0.541416 4_4:+8400950 None:intergenic
GTCATTGGTGGGTAGAGTGC+TGG 0.544783 4_4:+8400962 None:intergenic
ATGACTTGATGAAACGTGCT+AGG 0.545658 4_4:-8405732 Msa0667800:CDS
TTCCTTCTAAATGCATTTGG+TGG 0.546886 4_4:-8402084 Msa0667800:CDS
ATATAGTACCTTAAAGAAGT+AGG 0.548554 4_4:+8405520 None:intergenic
GTTCTTTGAGCTACCACTTG+AGG 0.551269 4_4:-8405695 Msa0667800:CDS
CCTGAGCATGGGCAGAAGGG+GGG 0.552365 4_4:-8400582 Msa0667800:three_prime_UTR
TACTCCTCTTTCACCTCAAG+TGG 0.557757 4_4:+8405682 None:intergenic
GAGTTATTTCATCAATAGTG+TGG 0.559572 4_4:-8400626 Msa0667800:three_prime_UTR
ACTTCCATATCCCTCATAAG+TGG 0.562902 4_4:+8405645 None:intergenic
ATAATCATCAGGAAGTAGAA+TGG 0.563810 4_4:+8401957 None:intergenic
CCAAGAGTGAGATCAGGTTG+AGG 0.564309 4_4:+8402012 None:intergenic
GCTACCACTTGAGGTGAAAG+AGG 0.568898 4_4:-8405686 Msa0667800:CDS
AAATAAGATATATTATTGGA+GGG 0.570304 4_4:+8406162 None:intergenic
GGTCAAAGAAATGAATAATG+AGG 0.572085 4_4:-8400656 Msa0667800:three_prime_UTR
GGTGGTGAAAATGATCTTGG+TGG 0.573200 4_4:-8402066 Msa0667800:CDS
AATAAGATATATTATTGGAG+GGG 0.573584 4_4:+8406163 None:intergenic
TCAAGTCATGACTAACTCCA+TGG 0.575018 4_4:+8405746 None:intergenic
CTTAAAGAAGTAGGAAGGGA+AGG 0.577290 4_4:+8405529 None:intergenic
AGGAACTTGTCACTAAGGAT+AGG 0.580748 4_4:-8400985 Msa0667800:CDS
AAAAGAGATATATTACTGGA+GGG 0.583920 4_4:+8406132 None:intergenic
CTTGATGAAACGTGCTAGGG+AGG 0.584023 4_4:-8405728 Msa0667800:CDS
TGGAACTATGGAAGCAGAGG+TGG 0.586206 4_4:-8400606 Msa0667800:three_prime_UTR
CCATATCCCTCATAAGTGGT+AGG 0.587478 4_4:+8405649 None:intergenic
TAAAAGAGATATATTACTGG+AGG 0.587880 4_4:+8406131 None:intergenic
AAACGATGGCTAGTGAAGGT+TGG 0.587904 4_4:-8406044 Msa0667800:exon
GACGCTAAAGCGCGTCTCGG+AGG 0.593584 4_4:-8405803 Msa0667800:CDS
TTTGGTTTGATGAAACGTTG+AGG 0.603796 4_4:+8405967 None:intergenic
ATTCATCAAATGTCATTGGT+GGG 0.606089 4_4:+8400951 None:intergenic
AAAGAGATATATTACTGGAG+GGG 0.609693 4_4:+8406133 None:intergenic
GTTTGGTCCCTAAGTGAACA+AGG 0.609902 4_4:+8405559 None:intergenic
CATGATATAAGTCTAATGAA+AGG 0.614887 4_4:+8400472 None:intergenic
GGATTAAGATGAACAAAGAG+AGG 0.616436 4_4:+8406246 None:intergenic
GGAGACGCTAAAGCGCGTCT+CGG 0.616905 4_4:-8405806 Msa0667800:CDS
TCCTCTCACTCTGACCCTGG+TGG 0.618749 4_4:-8401985 Msa0667800:CDS
ATTAGGACAAAAGGGCCTTG+TGG 0.622052 4_4:-8400917 Msa0667800:CDS
AATTCTCCTACCACTTATGA+GGG 0.623413 4_4:-8405655 Msa0667800:CDS
TGACTTGATGAAACGTGCTA+GGG 0.623542 4_4:-8405731 Msa0667800:CDS
AAGAAATGAATAATGAGGAG+TGG 0.624197 4_4:-8400651 Msa0667800:three_prime_UTR
GTGTGGAACTATGGAAGCAG+AGG 0.630256 4_4:-8400609 Msa0667800:three_prime_UTR
GCTAGTGAGAGAGTTTGTTG+TGG 0.631774 4_4:+8405930 None:intergenic
CGCGCTTTAGCGTCTCCTCG+CGG 0.644147 4_4:+8405812 None:intergenic
GATTAAGATGAACAAAGAGA+GGG 0.647613 4_4:+8406247 None:intergenic
TCGGAGGCGTGTAGAGAATG+GGG 0.651476 4_4:-8405787 Msa0667800:CDS
CACTTAGGGACCAAACCAAG+TGG 0.675504 4_4:-8405552 Msa0667800:CDS
TCTGGGCTTCAAGTACGTAG+AGG 0.701274 4_4:-8401931 Msa0667800:CDS
CGAGAACGAGAAGCTCCGCG+AGG 0.735233 4_4:-8405827 Msa0667800:CDS
GTAGAATGGTCAAACCACCA+GGG 0.760394 4_4:+8401971 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATAAATTTTTTTTATA+GGG + chr4_4:8405146-8405165 None:intergenic 0.0%
!!! ATAAAATAAATTTTTTTTAT+AGG + chr4_4:8405147-8405166 None:intergenic 0.0%
!! TATTTATATATAAATAATTT+CGG + chr4_4:8406038-8406057 None:intergenic 0.0%
!! CTAAAAATAAGATATATTAT+TGG + chr4_4:8400410-8400429 None:intergenic 10.0%
!!! CAATAATATATCTTATTTTT+AGG - chr4_4:8400408-8400427 Msa0667800:three_prime_UTR 10.0%
!!! AATATAAAAAGTTTTATAAG+TGG - chr4_4:8401131-8401150 Msa0667800:intron 10.0%
!!! ATATAAAAAGTTTTATAAGT+GGG - chr4_4:8401132-8401151 Msa0667800:intron 10.0%
!!! AATTTTTATTTTTTTAGTAG+TGG + chr4_4:8401803-8401822 None:intergenic 10.0%
!! TAAAAAAATAAAAATTAGTG+AGG - chr4_4:8401807-8401826 Msa0667800:intron 10.0%
!! AAAAAAATAAAAATTAGTGA+GGG - chr4_4:8401808-8401827 Msa0667800:intron 10.0%
!! TGACAAAAAAAATATATATA+TGG + chr4_4:8401955-8401974 None:intergenic 10.0%
!!! ATTGTTAATCATTTAAAATT+TGG - chr4_4:8402096-8402115 Msa0667800:CDS 10.0%
!!! AAAAACTGAATTTTTTTTTA+AGG + chr4_4:8402218-8402237 None:intergenic 10.0%
!!! AATTAAAACTGAAAAATTTT+CGG + chr4_4:8402267-8402286 None:intergenic 10.0%
!! TTAAAAGTCAAAAAAAATTT+CGG + chr4_4:8402304-8402323 None:intergenic 10.0%
!!! ATTGTTAATCATTTAAAATT+TGG + chr4_4:8402096-8402115 None:intergenic 10.0%
!!! AAAATTTATTTTATTTTGCT+CGG - chr4_4:8405153-8405172 Msa0667800:intron 10.0%
!! AAAGAATAATTACTAAATAT+GGG + chr4_4:8405274-8405293 None:intergenic 10.0%
!! AAATAAGATATATTATTGGA+GGG + chr4_4:8400406-8400425 None:intergenic 15.0%
!! AAAATAAGATATATTATTGG+AGG + chr4_4:8400407-8400426 None:intergenic 15.0%
!! AAATAAAAGAGATATATTAC+TGG + chr4_4:8400440-8400459 None:intergenic 15.0%
!! ATTGTGTAAGAAAATATAAA+CGG + chr4_4:8401225-8401244 None:intergenic 15.0%
!!! ACTTATTAATTTGAATAAGT+GGG + chr4_4:8401348-8401367 None:intergenic 15.0%
!!! TTTTTTTATTATGTCTTGTT+TGG - chr4_4:8401601-8401620 Msa0667800:intron 15.0%
!! TTGATCATAAAATTTAATGA+CGG + chr4_4:8401872-8401891 None:intergenic 15.0%
!! ATATGGTTAAAGTAAAATTA+AGG + chr4_4:8401938-8401957 None:intergenic 15.0%
!! GCATTTATATATAAAGAAAA+TGG - chr4_4:8401988-8402007 Msa0667800:CDS 15.0%
!! AAAAAAAAAAAAAAAAGCCA+GGG + chr4_4:8402192-8402211 None:intergenic 15.0%
!! AAAAAAAAAAAAAAAAAGCC+AGG + chr4_4:8402193-8402212 None:intergenic 15.0%
!! AAAAACTCGTAAAAAAAATT+CGG + chr4_4:8402243-8402262 None:intergenic 15.0%
!!! ATTAAAACTGAAAAATTTTC+GGG + chr4_4:8402266-8402285 None:intergenic 15.0%
!!! TGAAAAAAAACATTTTTTGA+AGG - chr4_4:8402369-8402388 Msa0667800:intron 15.0%
!!! ACAAATATCATTCAATTTTA+TGG - chr4_4:8403050-8403069 Msa0667800:intron 15.0%
!! AACAAAAAAAGAAAAAACAT+CGG - chr4_4:8403224-8403243 Msa0667800:intron 15.0%
!! TAAAACATAGTAAACTATTA+AGG - chr4_4:8403991-8404010 Msa0667800:intron 15.0%
!!! ATATATACTAAAGTTTCTTT+TGG - chr4_4:8404358-8404377 Msa0667800:intron 15.0%
!! ATATCATAGATAGATAAATA+GGG + chr4_4:8404730-8404749 None:intergenic 15.0%
!! AATATCATAGATAGATAAAT+AGG + chr4_4:8404731-8404750 None:intergenic 15.0%
!!! CGAAATAAAATTTATTTTGA+TGG + chr4_4:8405025-8405044 None:intergenic 15.0%
!!! AAATTTATTTTATTTTGCTC+GGG - chr4_4:8405154-8405173 Msa0667800:intron 15.0%
!! TATGAGCAATAAATAATTTA+GGG + chr4_4:8405200-8405219 None:intergenic 15.0%
!! TTATGAGCAATAAATAATTT+AGG + chr4_4:8405201-8405220 None:intergenic 15.0%
!! GAAAGAATAATTACTAAATA+TGG + chr4_4:8405275-8405294 None:intergenic 15.0%
!!! AATTAATAGAAATCACTTTT+GGG + chr4_4:8405700-8405719 None:intergenic 15.0%
!!! AAATTAATAGAAATCACTTT+TGG + chr4_4:8405701-8405720 None:intergenic 15.0%
!!! AAATATAATGTATTTTGTTG+AGG - chr4_4:8406053-8406072 Msa0667800:exon 15.0%
!!! ACTTTTAGATAAAAAATGAA+TGG + chr4_4:8406240-8406259 None:intergenic 15.0%
!! AATAAGATATATTATTGGAG+GGG + chr4_4:8400405-8400424 None:intergenic 20.0%
!!! ATTGATTTACAACACTTATA+TGG - chr4_4:8400715-8400734 Msa0667800:three_prime_UTR 20.0%
!!! CACTTATTAATTTGAATAAG+TGG + chr4_4:8401349-8401368 None:intergenic 20.0%
!!! ATTTTTAAGTATATGTCAAG+AGG + chr4_4:8401485-8401504 None:intergenic 20.0%
!! TGTTTAAATAAACAAGTACT+TGG - chr4_4:8401510-8401529 Msa0667800:intron 20.0%
!! ATATAAAGAAAATGGCTTAA+TGG - chr4_4:8401996-8402015 Msa0667800:CDS 20.0%
!! TTAAATGATTAACAATTGCA+GGG + chr4_4:8402490-8402509 None:intergenic 20.0%
!! TTTAAATGATTAACAATTGC+AGG + chr4_4:8402489-8402508 None:intergenic 20.0%
!! AAAAAAAAAAAAAAAGCCAG+GGG + chr4_4:8402191-8402210 None:intergenic 20.0%
!! AAAACTCGTAAAAAAAATTC+GGG + chr4_4:8402242-8402261 None:intergenic 20.0%
!! TTTAAATGATTAACAATTGC+AGG - chr4_4:8402489-8402508 Msa0667800:intron 20.0%
!! TTAAATGATTAACAATTGCA+GGG - chr4_4:8402490-8402509 Msa0667800:intron 20.0%
!! ATTGTATCAAAAAACAATGT+AGG - chr4_4:8402826-8402845 Msa0667800:intron 20.0%
!! TTGTATCAAAAAACAATGTA+GGG - chr4_4:8402827-8402846 Msa0667800:intron 20.0%
!! AAATCAAAATTCATGTTCTT+CGG - chr4_4:8403770-8403789 Msa0667800:intron 20.0%
!!! TGTATTTTACATGTGTTTTT+CGG - chr4_4:8403916-8403935 Msa0667800:intron 20.0%
!!! ATTTTAACTAACCTTGTTTT+GGG + chr4_4:8404069-8404088 None:intergenic 20.0%
!! ATTATATGAAACAAATCAAG+TGG - chr4_4:8404108-8404127 Msa0667800:intron 20.0%
!! TATCATAGATAGATAAATAG+GGG + chr4_4:8404729-8404748 None:intergenic 20.0%
!!! TCCAAGTAATTTAAGTATTT+TGG - chr4_4:8404754-8404773 Msa0667800:intron 20.0%
!! TCCAAAATACTTAAATTACT+TGG + chr4_4:8404758-8404777 None:intergenic 20.0%
!! ACTTAGAAACTTAAATAACT+TGG + chr4_4:8404788-8404807 None:intergenic 20.0%
!!! TTATAGTTTGATCTAACTTT+TGG + chr4_4:8404880-8404899 None:intergenic 20.0%
!! AAAAGTTAGATCAAACTATA+AGG - chr4_4:8404879-8404898 Msa0667800:intron 20.0%
!! AAAGTTAGATCAAACTATAA+GGG - chr4_4:8404880-8404899 Msa0667800:intron 20.0%
!! TATTGCTCATAATTTAAACA+TGG - chr4_4:8405209-8405228 Msa0667800:intron 20.0%
!! ATTGCTCATAATTTAAACAT+GGG - chr4_4:8405210-8405229 Msa0667800:intron 20.0%
!! ATGATTTATCTTATCTTTGT+AGG - chr4_4:8405437-8405456 Msa0667800:intron 20.0%
!! ATGAATATAGAGTTTACATT+AGG - chr4_4:8405631-8405650 Msa0667800:CDS 20.0%
!!! ATTAATAGAAATCACTTTTG+GGG + chr4_4:8405699-8405718 None:intergenic 20.0%
!!! TGTCATTAGTTTTCAATTAA+TGG - chr4_4:8405721-8405740 Msa0667800:CDS 20.0%
!! TTAAGTAAATGTGTTCAATT+TGG - chr4_4:8405766-8405785 Msa0667800:CDS 20.0%
!! TAAGTAAATGTGTTCAATTT+GGG - chr4_4:8405767-8405786 Msa0667800:CDS 20.0%
!! TCATTCTTGGATATAAATAT+TGG + chr4_4:8405813-8405832 None:intergenic 20.0%
!! TCATGAAAATTGATTGAATA+GGG - chr4_4:8406184-8406203 Msa0667800:five_prime_UTR 20.0%
! AAAAGAGATATATTACTGGA+GGG + chr4_4:8400436-8400455 None:intergenic 25.0%
! TAAAAGAGATATATTACTGG+AGG + chr4_4:8400437-8400456 None:intergenic 25.0%
!! AAGTGTTGTAAATCAATAAC+TGG + chr4_4:8400712-8400731 None:intergenic 25.0%
! ATATAGTACCTTAAAGAAGT+AGG + chr4_4:8401048-8401067 None:intergenic 25.0%
! TAAAAAAAGATAAGCTTGGT+AGG + chr4_4:8401073-8401092 None:intergenic 25.0%
! TTGCTAAAAAAAGATAAGCT+TGG + chr4_4:8401077-8401096 None:intergenic 25.0%
! TGTCATAATATATGTACGTA+AGG - chr4_4:8401300-8401319 Msa0667800:intron 25.0%
! GTCATAATATATGTACGTAA+GGG - chr4_4:8401301-8401320 Msa0667800:intron 25.0%
! ATCATGGGAGAATATTATAA+AGG + chr4_4:8401418-8401437 None:intergenic 25.0%
! TCATTACTCTAAACAAATTC+AGG + chr4_4:8401639-8401658 None:intergenic 25.0%
! TGGTTAAAGTAAAATTAAGG+AGG + chr4_4:8401935-8401954 None:intergenic 25.0%
! TAAATGATTAACAATTGCAG+GGG + chr4_4:8402491-8402510 None:intergenic 25.0%
! TAAATGATTAACAATTGCAG+GGG - chr4_4:8402491-8402510 Msa0667800:intron 25.0%
! AATAAGAAGTGAGAAAAACA+AGG + chr4_4:8402684-8402703 None:intergenic 25.0%
!!! TTGTTTTTCTCACTTCTTAT+TGG - chr4_4:8402683-8402702 Msa0667800:intron 25.0%
! AAAAACAATGAGAGAGAAAA+AGG - chr4_4:8402708-8402727 Msa0667800:intron 25.0%
!! AAAAAACAATGTAGGGTATT+TGG - chr4_4:8402834-8402853 Msa0667800:intron 25.0%
! TATTAAAATAAGCACGTGAA+AGG - chr4_4:8402956-8402975 Msa0667800:intron 25.0%
! ATTAAAATAAGCACGTGAAA+GGG - chr4_4:8402957-8402976 Msa0667800:intron 25.0%
! GGAAGAAAAAAACAAATAAC+TGG - chr4_4:8402978-8402997 Msa0667800:intron 25.0%
!! TTGTTGTTGACAAATATGAT+AGG - chr4_4:8403110-8403129 Msa0667800:intron 25.0%
! TGTTGTTGACAAATATGATA+GGG - chr4_4:8403111-8403130 Msa0667800:intron 25.0%
! TTAACTAATGATGAGTTCTT+CGG + chr4_4:8403260-8403279 None:intergenic 25.0%
!!! GATTTTAACTAACCTTGTTT+TGG + chr4_4:8404070-8404089 None:intergenic 25.0%
!! AAGGTTAGTTAAAATCAAAG+TGG - chr4_4:8404074-8404093 Msa0667800:intron 25.0%
!!! TTTAACTTTTGAGTCAAAGT+TGG + chr4_4:8404222-8404241 None:intergenic 25.0%
!!! AAGTTTCTTTTGGTGATAAT+AGG - chr4_4:8404368-8404387 Msa0667800:intron 25.0%
! GAGTTATTGTCAATTAATCT+TGG - chr4_4:8404445-8404464 Msa0667800:intron 25.0%
! TTAGAAGGAAATCATCATTA+AGG + chr4_4:8404471-8404490 None:intergenic 25.0%
!!! TATTGATGATGAAAGCATTT+GGG + chr4_4:8404687-8404706 None:intergenic 25.0%
!!! ATATTGATGATGAAAGCATT+TGG + chr4_4:8404688-8404707 None:intergenic 25.0%
! AATGCTTTCATCATCAATAT+TGG - chr4_4:8404688-8404707 Msa0667800:intron 25.0%
!! GAGTCTTATATTAAAGTTTC+GGG + chr4_4:8404940-8404959 None:intergenic 25.0%
!! GGAGTCTTATATTAAAGTTT+CGG + chr4_4:8404941-8404960 None:intergenic 25.0%
! TGCTGTGTATTAAATTGTAT+TGG + chr4_4:8404962-8404981 None:intergenic 25.0%
! AAATACGAAGATAGGATATA+AGG - chr4_4:8405082-8405101 Msa0667800:intron 25.0%
!! TAAATAATTTAGGGTTTGGA+TGG + chr4_4:8405191-8405210 None:intergenic 25.0%
!! GCAATAAATAATTTAGGGTT+TGG + chr4_4:8405195-8405214 None:intergenic 25.0%
! AAGATAAATCATTGATGAGT+AGG + chr4_4:8405429-8405448 None:intergenic 25.0%
! CTATATTCATCAAATGTCAT+TGG + chr4_4:8405621-8405640 None:intergenic 25.0%
! TCCTAAAAATTTGGTATCTT+AGG + chr4_4:8406012-8406031 None:intergenic 25.0%
! TTTCGGTTATCCTAAAAATT+TGG + chr4_4:8406021-8406040 None:intergenic 25.0%
! CATGATATAAGTCTAATGAA+AGG + chr4_4:8406096-8406115 None:intergenic 25.0%
! CTCATGAAAATTGATTGAAT+AGG - chr4_4:8406183-8406202 Msa0667800:five_prime_UTR 25.0%
GATTAAGATGAACAAAGAGA+GGG + chr4_4:8400321-8400340 None:intergenic 30.0%
AAAGAGATATATTACTGGAG+GGG + chr4_4:8400435-8400454 None:intergenic 30.0%
!!! GTGTTTTACACTAGCTTTTT+TGG + chr4_4:8400496-8400515 None:intergenic 30.0%
GTAAAACACACAAAAAACGA+TGG - chr4_4:8400507-8400526 Msa0667800:three_prime_UTR 30.0%
CATGAACATGATGAAAAGTT+TGG + chr4_4:8400660-8400679 None:intergenic 30.0%
!!! TTCTTCCAAGTTTTAAACCA+TGG - chr4_4:8400802-8400821 Msa0667800:three_prime_UTR 30.0%
! TAACTCCATGGTTTAAAACT+TGG + chr4_4:8400810-8400829 None:intergenic 30.0%
AATTTGAATAAGTGGGTGTT+CGG + chr4_4:8401341-8401360 None:intergenic 30.0%
!!! GGACAATATTTTTTTCCTCT+CGG + chr4_4:8401397-8401416 None:intergenic 30.0%
ATTCTCCCATGATTTAATCA+TGG - chr4_4:8401425-8401444 Msa0667800:intron 30.0%
CTTGTCCATGATTAAATCAT+GGG + chr4_4:8401433-8401452 None:intergenic 30.0%
TCTTGTCCATGATTAAATCA+TGG + chr4_4:8401434-8401453 None:intergenic 30.0%
! TTTAATGACGGAATTAGAGA+GGG + chr4_4:8401860-8401879 None:intergenic 30.0%
! ATTTAATGACGGAATTAGAG+AGG + chr4_4:8401861-8401880 None:intergenic 30.0%
TTAAGGAGGAAAATTAGTGA+CGG + chr4_4:8401921-8401940 None:intergenic 30.0%
AGGAAAAAAAAAATTAGCCC+AGG - chr4_4:8402389-8402408 Msa0667800:intron 30.0%
GGAAAAAAAAAATTAGCCCA+GGG - chr4_4:8402390-8402409 Msa0667800:intron 30.0%
GAAAAAAAAAATTAGCCCAG+GGG - chr4_4:8402391-8402410 Msa0667800:intron 30.0%
TCAACAAAGTTGTCATCAAA+TGG + chr4_4:8402658-8402677 None:intergenic 30.0%
GTTCAAAAGTTGTCAAAAAG+TGG - chr4_4:8402775-8402794 Msa0667800:intron 30.0%
! CTAAATTGCTGATAGTGATA+AGG + chr4_4:8403085-8403104 None:intergenic 30.0%
CTTATCACTATCAGCAATTT+AGG - chr4_4:8403083-8403102 Msa0667800:intron 30.0%
GAAGAACTCATCATTAGTTA+AGG - chr4_4:8403259-8403278 Msa0667800:intron 30.0%
! ACACAAACACACAACTTTTT+GGG - chr4_4:8403356-8403375 Msa0667800:intron 30.0%
! ATGATGATGATGATATGTTG+TGG - chr4_4:8403552-8403571 Msa0667800:intron 30.0%
TGTTGTGGATAGTATATGAA+TGG - chr4_4:8403567-8403586 Msa0667800:intron 30.0%
TGCTATAATATGAGTGTGTT+TGG - chr4_4:8403734-8403753 Msa0667800:intron 30.0%
CACGAAGAAAAAAAAAACCT+CGG + chr4_4:8403806-8403825 None:intergenic 30.0%
!!! TTTTTTCTTCGTGTTTTCGT+CGG - chr4_4:8403813-8403832 Msa0667800:intron 30.0%
CGCAATATAGTGGTTAAAAA+CGG - chr4_4:8403967-8403986 Msa0667800:intron 30.0%
!!! TTGTTTTGGGTTTATAGTTG+TGG + chr4_4:8404056-8404075 None:intergenic 30.0%
ACAACTATAAACCCAAAACA+AGG - chr4_4:8404055-8404074 Msa0667800:intron 30.0%
!! AAGTAAAGAGTACTCAATTG+TGG + chr4_4:8404316-8404335 None:intergenic 30.0%
AGGAATGTGATCAATGAATA+TGG - chr4_4:8404388-8404407 Msa0667800:intron 30.0%
GATTTCCTTCTAAATGCATT+TGG - chr4_4:8404478-8404497 Msa0667800:intron 30.0%
ATAATCATCAGGAAGTAGAA+TGG + chr4_4:8404611-8404630 None:intergenic 30.0%
TTCCTGATGATTATGTATCT+GGG - chr4_4:8404617-8404636 Msa0667800:intron 30.0%
! AATACGTCACTTTGTTAGTT+AGG + chr4_4:8404829-8404848 None:intergenic 30.0%
!! ATATTAAAGTTTCGGGTTGT+TGG + chr4_4:8404933-8404952 None:intergenic 30.0%
TCGAGCTAGAAAAAAAAGTT+TGG - chr4_4:8404994-8405013 Msa0667800:intron 30.0%
CGAGCTAGAAAAAAAAGTTT+GGG - chr4_4:8404995-8405014 Msa0667800:intron 30.0%
AGTGAGATAAATACGAAGAT+AGG - chr4_4:8405074-8405093 Msa0667800:intron 30.0%
!! TGTTTAAAGGGTCTTGTTAA+CGG + chr4_4:8405392-8405411 None:intergenic 30.0%
TAACAAGACCCTTTAAACAT+TGG - chr4_4:8405393-8405412 Msa0667800:intron 30.0%
AACAACCACCAATGTTTAAA+GGG + chr4_4:8405404-8405423 None:intergenic 30.0%
AAACAACCACCAATGTTTAA+AGG + chr4_4:8405405-8405424 None:intergenic 30.0%
CAATGAAACTCTATCTTTGT+TGG + chr4_4:8405514-8405533 None:intergenic 30.0%
CAACAAAGATAGAGTTTCAT+TGG - chr4_4:8405512-8405531 Msa0667800:intron 30.0%
ACTCCTTGGATTATAAAAGA+AGG + chr4_4:8405538-8405557 None:intergenic 30.0%
TGAATTAGTAAATCACTCCT+TGG + chr4_4:8405552-8405571 None:intergenic 30.0%
TTTACTAATTCAACCTGCTA+AGG - chr4_4:8405560-8405579 Msa0667800:CDS 30.0%
ATTCATCAAATGTCATTGGT+GGG + chr4_4:8405617-8405636 None:intergenic 30.0%
TATTCATCAAATGTCATTGG+TGG + chr4_4:8405618-8405637 None:intergenic 30.0%
AGAGTTTACATTAGGACAAA+AGG - chr4_4:8405639-8405658 Msa0667800:CDS 30.0%
GAGTTTACATTAGGACAAAA+GGG - chr4_4:8405640-8405659 Msa0667800:CDS 30.0%
AAAAGCTCAAGTAGAATCTT+TGG - chr4_4:8405671-8405690 Msa0667800:CDS 30.0%
TGTTGTACTTATCTCAAACT+TGG - chr4_4:8405867-8405886 Msa0667800:CDS 30.0%
GTTGTACTTATCTCAAACTT+GGG - chr4_4:8405868-8405887 Msa0667800:CDS 30.0%
CTTTGACCTTGAATTGATAA+GGG + chr4_4:8405897-8405916 None:intergenic 30.0%
TCTTTGACCTTGAATTGATA+AGG + chr4_4:8405898-8405917 None:intergenic 30.0%
GGTCAAAGAAATGAATAATG+AGG - chr4_4:8405909-8405928 Msa0667800:CDS 30.0%
AAGAAATGAATAATGAGGAG+TGG - chr4_4:8405914-8405933 Msa0667800:CDS 30.0%
! GAGTTATTTCATCAATAGTG+TGG - chr4_4:8405939-8405958 Msa0667800:CDS 30.0%
! GCCTAAGATACCAAATTTTT+AGG - chr4_4:8406008-8406027 Msa0667800:CDS 30.0%
GAAAGGCTCAAATGTAAAAT+TGG + chr4_4:8406079-8406098 None:intergenic 30.0%
! TTCATGAGATCTGAAATAGT+TGG + chr4_4:8406171-8406190 None:intergenic 30.0%
GGATTAAGATGAACAAAGAG+AGG + chr4_4:8400322-8400341 None:intergenic 35.0%
! TTGGTTTGATGAAACGTTGA+GGG + chr4_4:8400600-8400619 None:intergenic 35.0%
!! TTTGGTTTGATGAAACGTTG+AGG + chr4_4:8400601-8400620 None:intergenic 35.0%
TAATTCTCCTACCACTTATG+AGG - chr4_4:8400909-8400928 Msa0667800:CDS 35.0%
AATTCTCCTACCACTTATGA+GGG - chr4_4:8400910-8400929 Msa0667800:CDS 35.0%
!!! AGTGAAAAAAGGTGCCATTT+TGG - chr4_4:8400951-8400970 Msa0667800:CDS 35.0%
!!! AAAAAGGTGCCATTTTGGAT+TGG - chr4_4:8400956-8400975 Msa0667800:CDS 35.0%
! ATTACATGCCTTGTTCACTT+AGG - chr4_4:8400998-8401017 Msa0667800:CDS 35.0%
! TTACATGCCTTGTTCACTTA+GGG - chr4_4:8400999-8401018 Msa0667800:CDS 35.0%
GTACCTTAAAGAAGTAGGAA+GGG + chr4_4:8401043-8401062 None:intergenic 35.0%
AGTACCTTAAAGAAGTAGGA+AGG + chr4_4:8401044-8401063 None:intergenic 35.0%
ATTTGAATAAGTGGGTGTTC+GGG + chr4_4:8401340-8401359 None:intergenic 35.0%
ATATGCCTTTCTTGCTTTCT+TGG - chr4_4:8401453-8401472 Msa0667800:intron 35.0%
AGAAACCAAGAAAGCAAGAA+AGG + chr4_4:8401461-8401480 None:intergenic 35.0%
TTAGTGAGGGAAATTTAGAG+AGG - chr4_4:8401821-8401840 Msa0667800:intron 35.0%
AATAGGCGGCGTTTAAAAAT+TGG - chr4_4:8402036-8402055 Msa0667800:CDS 35.0%
CAGATTAGCAAAAATGGCAT+GGG - chr4_4:8402151-8402170 Msa0667800:CDS 35.0%
AATAGGCGGCGTTTAAAAAT+TGG + chr4_4:8402036-8402055 None:intergenic 35.0%
! CACTGACACTCAATTTTCTT+TGG + chr4_4:8402594-8402613 None:intergenic 35.0%
! CTGATAGTGATAAGGTTGTA+CGG + chr4_4:8403077-8403096 None:intergenic 35.0%
TTCTCGTGCTAGTAATGTTA+CGG + chr4_4:8403321-8403340 None:intergenic 35.0%
! CACACAAACACACAACTTTT+TGG - chr4_4:8403355-8403374 Msa0667800:intron 35.0%
! TTTTCCAAACTGTTGAAGCT+TGG - chr4_4:8403439-8403458 Msa0667800:intron 35.0%
TTGAAGCTTGGATCAAAGTT+GGG - chr4_4:8403451-8403470 Msa0667800:intron 35.0%
! TTGGGATTGGTAGATTAGAA+AGG - chr4_4:8403469-8403488 Msa0667800:intron 35.0%
GATTGGTAGATTAGAAAGGA+TGG - chr4_4:8403473-8403492 Msa0667800:intron 35.0%
! TAGAAAGGATGGATTCTATG+AGG - chr4_4:8403484-8403503 Msa0667800:intron 35.0%
GATTCTATGAGGTCTAACTA+AGG - chr4_4:8403495-8403514 Msa0667800:intron 35.0%
TGTGATTTCTGTCATGTTGT+TGG - chr4_4:8403520-8403539 Msa0667800:intron 35.0%
TGTGGATAGTATATGAATGG+AGG - chr4_4:8403570-8403589 Msa0667800:intron 35.0%
AGGAACAGAACAAGAACATA+GGG - chr4_4:8403590-8403609 Msa0667800:intron 35.0%
ATAGATGGTTGGATGAGTAA+TGG - chr4_4:8403651-8403670 Msa0667800:intron 35.0%
TGGTTGTTCCATTATTGAAG+TGG - chr4_4:8403676-8403695 Msa0667800:intron 35.0%
TTGTTCCATTATTGAAGTGG+TGG - chr4_4:8403679-8403698 Msa0667800:intron 35.0%
TGAGTGTGTTTGGAAAAGTT+TGG - chr4_4:8403744-8403763 Msa0667800:intron 35.0%
GAGTGTGTTTGGAAAAGTTT+GGG - chr4_4:8403745-8403764 Msa0667800:intron 35.0%
ATTAACTACCGAAGTTCCTT+CGG + chr4_4:8403849-8403868 None:intergenic 35.0%
TGCAGTTGACACATATGATA+GGG + chr4_4:8403942-8403961 None:intergenic 35.0%
!!! TTTTGGGTTTATAGTTGTGG+TGG + chr4_4:8404053-8404072 None:intergenic 35.0%
!!! TTTTGAGTCAAAGTTGGTGT+GGG + chr4_4:8404216-8404235 None:intergenic 35.0%
GGTGAAGAAGTTGTTAAGTT+AGG - chr4_4:8404409-8404428 Msa0667800:intron 35.0%
GAAGAAGTTGTTAAGTTAGG+AGG - chr4_4:8404412-8404431 Msa0667800:intron 35.0%
TTCCTTCTAAATGCATTTGG+TGG - chr4_4:8404481-8404500 Msa0667800:intron 35.0%
!! TTTGGTGGTGAAAATGATCT+TGG - chr4_4:8404496-8404515 Msa0667800:intron 35.0%
CTTCCTGATGATTATGTATC+TGG - chr4_4:8404616-8404635 Msa0667800:intron 35.0%
! CAATATTGGTGACCAAATTC+AGG - chr4_4:8404702-8404721 Msa0667800:intron 35.0%
ATAAATAGGGGACCTGAATT+TGG + chr4_4:8404717-8404736 None:intergenic 35.0%
GTTAGATCAAACTATAAGGG+AGG - chr4_4:8404883-8404902 Msa0667800:intron 35.0%
TGGATGTGTGTGTATATATG+TGG + chr4_4:8404913-8404932 None:intergenic 35.0%
! TGGCCTTCTTTTATAATCCA+AGG - chr4_4:8405532-8405551 Msa0667800:CDS 35.0%
GACATGTGTAAGTTCATTCT+TGG + chr4_4:8405826-8405845 None:intergenic 35.0%
TCATCAATAGTGTGGAACTA+TGG - chr4_4:8405947-8405966 Msa0667800:CDS 35.0%
! ACGTGTGAAGCTTTTTAATC+TGG - chr4_4:8406213-8406232 Msa0667800:five_prime_UTR 35.0%
! CGTTTGTGGCTTCTTGTTAT+GGG + chr4_4:8400343-8400362 None:intergenic 40.0%
CAAAAAACGATGGCTAGTGA+AGG - chr4_4:8400517-8400536 Msa0667800:three_prime_UTR 40.0%
!! GCTTATGCTACTTTCAGCTA+AGG + chr4_4:8400572-8400591 None:intergenic 40.0%
!! GTTTGTTGTGGTAGGTCTTT+GGG + chr4_4:8400626-8400645 None:intergenic 40.0%
!! AGTTTGTTGTGGTAGGTCTT+TGG + chr4_4:8400627-8400646 None:intergenic 40.0%
TCAAGTCATGACTAACTCCA+TGG + chr4_4:8400822-8400841 None:intergenic 40.0%
ATGACTTGATGAAACGTGCT+AGG - chr4_4:8400833-8400852 Msa0667800:three_prime_UTR 40.0%
TGACTTGATGAAACGTGCTA+GGG - chr4_4:8400834-8400853 Msa0667800:three_prime_UTR 40.0%
ACTTCCATATCCCTCATAAG+TGG + chr4_4:8400923-8400942 None:intergenic 40.0%
AGTCGTTTGGGAGTGAAAAA+AGG - chr4_4:8400940-8400959 Msa0667800:CDS 40.0%
GTAGTCACTCCAATCCAAAA+TGG + chr4_4:8400968-8400987 None:intergenic 40.0%
CTTAAAGAAGTAGGAAGGGA+AGG + chr4_4:8401039-8401058 None:intergenic 40.0%
CTTCCCTTCCTACTTCTTTA+AGG - chr4_4:8401037-8401056 Msa0667800:CDS 40.0%
CTCTCGGTCAAATAGTTTAG+TGG + chr4_4:8401381-8401400 None:intergenic 40.0%
CACTAAACTATTTGACCGAG+AGG - chr4_4:8401379-8401398 Msa0667800:intron 40.0%
!!! GTAGTGGATCACGATTTTGA+TGG + chr4_4:8401787-8401806 None:intergenic 40.0%
!! GCAGTGATTAAGTTGGTCAA+AGG + chr4_4:8402459-8402478 None:intergenic 40.0%
!! TTTTTGCTAATCTGGTGACG+TGG + chr4_4:8402145-8402164 None:intergenic 40.0%
CGTCACCAGATTAGCAAAAA+TGG - chr4_4:8402145-8402164 Msa0667800:CDS 40.0%
!!! CCATGCCATTTTTGCTAATC+TGG + chr4_4:8402153-8402172 None:intergenic 40.0%
CCAGATTAGCAAAAATGGCA+TGG - chr4_4:8402150-8402169 Msa0667800:CDS 40.0%
!!! AAATTAGCCCAGGGGTATTT+TGG - chr4_4:8402399-8402418 Msa0667800:intron 40.0%
GAATTGACCAAAATACCCCT+GGG + chr4_4:8402409-8402428 None:intergenic 40.0%
CAGATTGGCAAAAATGGCAT+GGG + chr4_4:8402431-8402450 None:intergenic 40.0%
!! GCAGTGATTAAGTTGGTCAA+AGG - chr4_4:8402459-8402478 Msa0667800:intron 40.0%
TGTCTTTAGTCCCTGCAAAT+AGG + chr4_4:8402563-8402582 None:intergenic 40.0%
CAACGTGACAGTGTAAGAAT+TGG + chr4_4:8402860-8402879 None:intergenic 40.0%
CAGACGTCAACATAAATGCA+TGG - chr4_4:8402923-8402942 Msa0667800:intron 40.0%
AAAACAAATAACTGGCTGCG+TGG - chr4_4:8402986-8403005 Msa0667800:intron 40.0%
TAAAAGACGAAATGTCCCTG+CGG - chr4_4:8403148-8403167 Msa0667800:intron 40.0%
TAGTCTAACACGTCCAGTTA+AGG - chr4_4:8403292-8403311 Msa0667800:intron 40.0%
TGATCCAAGCTTCAACAGTT+TGG + chr4_4:8403446-8403465 None:intergenic 40.0%
GTTGAAGCTTGGATCAAAGT+TGG - chr4_4:8403450-8403469 Msa0667800:intron 40.0%
GAGGAACAGAACAAGAACAT+AGG - chr4_4:8403589-8403608 Msa0667800:intron 40.0%
TGGGAATTGAGAAGATGGAT+TGG - chr4_4:8403614-8403633 Msa0667800:intron 40.0%
! GGGAATTGAGAAGATGGATT+GGG - chr4_4:8403615-8403634 Msa0667800:intron 40.0%
TGGTTGGATGAGTAATGGTT+TGG - chr4_4:8403656-8403675 Msa0667800:intron 40.0%
GTGTTCCACCACTTCAATAA+TGG + chr4_4:8403687-8403706 None:intergenic 40.0%
AGCAGTTAACTACCGAAGTA+AGG + chr4_4:8403883-8403902 None:intergenic 40.0%
CTGCAGTTGACACATATGAT+AGG + chr4_4:8403943-8403962 None:intergenic 40.0%
! CTGCAGTTTTCGCAATATAG+TGG - chr4_4:8403957-8403976 Msa0667800:intron 40.0%
!!! CTTTTGAGTCAAAGTTGGTG+TGG + chr4_4:8404217-8404236 None:intergenic 40.0%
CACCACCAAATGCATTTAGA+AGG + chr4_4:8404486-8404505 None:intergenic 40.0%
! ATGATCTTGGTGGTTGCTTA+AGG - chr4_4:8404509-8404528 Msa0667800:intron 40.0%
! TGATCTTGGTGGTTGCTTAA+GGG - chr4_4:8404510-8404529 Msa0667800:intron 40.0%
AGCCCAGATACATAATCATC+AGG + chr4_4:8404622-8404641 None:intergenic 40.0%
AAGTACGTAGAGGAGAAGAT+TGG - chr4_4:8404644-8404663 Msa0667800:intron 40.0%
!! ATGATGAAAGCATTTGGGAC+AGG + chr4_4:8404682-8404701 None:intergenic 40.0%
!! AAAGTGCTTAAAGAGTGTCC+TGG - chr4_4:8405361-8405380 Msa0667800:intron 40.0%
CAAGACCCTTTAAACATTGG+TGG - chr4_4:8405396-8405415 Msa0667800:intron 40.0%
TTAGTGACAAGTTCCTTAGC+AGG + chr4_4:8405576-8405595 None:intergenic 40.0%
TGCTAAGGAACTTGTCACTA+AGG - chr4_4:8405575-8405594 Msa0667800:CDS 40.0%
AGGAACTTGTCACTAAGGAT+AGG - chr4_4:8405580-8405599 Msa0667800:CDS 40.0%
! TCTACTTGAGCTTTTCCACA+AGG + chr4_4:8405666-8405685 None:intergenic 40.0%
GCGTTTGTGGCTTCTTGTTA+TGG + chr4_4:8400344-8400363 None:intergenic 45.0%
AAACGATGGCTAGTGAAGGT+TGG - chr4_4:8400521-8400540 Msa0667800:three_prime_UTR 45.0%
!! TGCTACTTTCAGCTAAGGCT+TGG + chr4_4:8400567-8400586 None:intergenic 45.0%
!!! GTGGTAGGTCTTTGGGATTT+TGG + chr4_4:8400619-8400638 None:intergenic 45.0%
!! GTGAGAGAGTTTGTTGTGGT+AGG + chr4_4:8400634-8400653 None:intergenic 45.0%
!! GCTAGTGAGAGAGTTTGTTG+TGG + chr4_4:8400638-8400657 None:intergenic 45.0%
GTTCTTTGAGCTACCACTTG+AGG - chr4_4:8400870-8400889 Msa0667800:exon 45.0%
TACTCCTCTTTCACCTCAAG+TGG + chr4_4:8400886-8400905 None:intergenic 45.0%
CCATATCCCTCATAAGTGGT+AGG + chr4_4:8400919-8400938 None:intergenic 45.0%
CCTACCACTTATGAGGGATA+TGG - chr4_4:8400916-8400935 Msa0667800:CDS 45.0%
TGAGGGATATGGAAGTCGTT+TGG - chr4_4:8400927-8400946 Msa0667800:CDS 45.0%
GAGGGATATGGAAGTCGTTT+GGG - chr4_4:8400928-8400947 Msa0667800:CDS 45.0%
GTTTGGTCCCTAAGTGAACA+AGG + chr4_4:8401009-8401028 None:intergenic 45.0%
TTAAACGCCGCCTATTTGCA+GGG + chr4_4:8402550-8402569 None:intergenic 45.0%
TTTAAACGCCGCCTATTTGC+AGG + chr4_4:8402549-8402568 None:intergenic 45.0%
! TGCCAGGATTAGCGATTACA+GGG + chr4_4:8402519-8402538 None:intergenic 45.0%
! ATGCCAGGATTAGCGATTAC+AGG + chr4_4:8402518-8402537 None:intergenic 45.0%
AATTGCAGGGGTAAAATGCC+AGG + chr4_4:8402503-8402522 None:intergenic 45.0%
TGACGTGGCAGTGATTAAGT+TGG + chr4_4:8402452-8402471 None:intergenic 45.0%
GGAAATGACGAAATTACCCC+TGG - chr4_4:8402172-8402191 Msa0667800:CDS 45.0%
GGAATTGACCAAAATACCCC+TGG + chr4_4:8402410-8402429 None:intergenic 45.0%
CCAGATTGGCAAAAATGGCA+TGG + chr4_4:8402432-8402451 None:intergenic 45.0%
!!! CCATGCCATTTTTGCCAATC+TGG - chr4_4:8402429-8402448 Msa0667800:intron 45.0%
CGTCACCAGATTGGCAAAAA+TGG + chr4_4:8402437-8402456 None:intergenic 45.0%
!! TTTTTGCCAATCTGGTGACG+TGG - chr4_4:8402437-8402456 Msa0667800:intron 45.0%
TGACGTGGCAGTGATTAAGT+TGG - chr4_4:8402452-8402471 Msa0667800:intron 45.0%
AATTGCAGGGGTAAAATGCC+AGG - chr4_4:8402503-8402522 Msa0667800:intron 45.0%
! ATGCCAGGATTAGCGATTAC+AGG - chr4_4:8402518-8402537 Msa0667800:intron 45.0%
! TGCCAGGATTAGCGATTACA+GGG - chr4_4:8402519-8402538 Msa0667800:intron 45.0%
TTTAAACGCCGCCTATTTGC+AGG - chr4_4:8402549-8402568 Msa0667800:intron 45.0%
TTAAACGCCGCCTATTTGCA+GGG - chr4_4:8402550-8402569 Msa0667800:intron 45.0%
CTTTAGTCCCTGCAAATAGG+CGG + chr4_4:8402560-8402579 None:intergenic 45.0%
TTCGGTAATTAACTGCCGCA+GGG + chr4_4:8403166-8403185 None:intergenic 45.0%
GAACCTGCTGCAGTTAACTA+CGG - chr4_4:8403191-8403210 Msa0667800:intron 45.0%
TTTCCGTAGTTAACTGCAGC+AGG + chr4_4:8403197-8403216 None:intergenic 45.0%
AATGTTACGGCAGCCTTAAC+TGG + chr4_4:8403308-8403327 None:intergenic 45.0%
GCTTGGATCAAAGTTGGGAT+TGG - chr4_4:8403456-8403475 Msa0667800:intron 45.0%
ACAGAACAAGAACATAGGGC+TGG - chr4_4:8403594-8403613 Msa0667800:intron 45.0%
CAGAACAAGAACATAGGGCT+GGG - chr4_4:8403595-8403614 Msa0667800:intron 45.0%
GGAAGTCACACGTAGATAGA+TGG - chr4_4:8403636-8403655 Msa0667800:intron 45.0%
GTCACACGTAGATAGATGGT+TGG - chr4_4:8403640-8403659 Msa0667800:intron 45.0%
GTTAACTGCCGAAGGAACTT+CGG - chr4_4:8403838-8403857 Msa0667800:intron 45.0%
CTTCGGTAGTTAATTGCAGC+TGG - chr4_4:8403855-8403874 Msa0667800:intron 45.0%
! TTGCAGCTGGTTCCTTACTT+CGG - chr4_4:8403868-8403887 Msa0667800:intron 45.0%
TTCGGTAGTTAACTGCTGCA+GGG - chr4_4:8403886-8403905 Msa0667800:intron 45.0%
! ATAGTTGTGGTGGTTGGTCA+AGG + chr4_4:8404043-8404062 None:intergenic 45.0%
GGGTTTATAGTTGTGGTGGT+TGG + chr4_4:8404049-8404068 None:intergenic 45.0%
GGTGGTGAAAATGATCTTGG+TGG - chr4_4:8404499-8404518 Msa0667800:intron 45.0%
!! AGATCAGGTTGAGGACACTT+TGG + chr4_4:8404547-8404566 None:intergenic 45.0%
GTAGAATGGTCAAACCACCA+GGG + chr4_4:8404597-8404616 None:intergenic 45.0%
AGTAGAATGGTCAAACCACC+AGG + chr4_4:8404598-8404617 None:intergenic 45.0%
! TTTAGGGTTTGGATGGACCA+CGG + chr4_4:8405184-8405203 None:intergenic 45.0%
ATTAGGACAAAAGGGCCTTG+TGG - chr4_4:8405648-8405667 Msa0667800:CDS 45.0%
GGGTTGCCCTTATCAATTCA+AGG - chr4_4:8405888-8405907 Msa0667800:CDS 45.0%
!!! TTTTTTTAATACAATTATTA+TGG + chr4_4:8403411-8403430 None:intergenic 5.0%
CGTCTAAGTGAGTGCGTTTG+TGG + chr4_4:8400357-8400376 None:intergenic 50.0%
AAGGCTTGGACTCGAATCAC+TGG + chr4_4:8400553-8400572 None:intergenic 50.0%
CTTGATGAAACGTGCTAGGG+AGG - chr4_4:8400837-8400856 Msa0667800:three_prime_UTR 50.0%
TGAAACGTGCTAGGGAGGTT+TGG - chr4_4:8400842-8400861 Msa0667800:three_prime_UTR 50.0%
GCTACCACTTGAGGTGAAAG+AGG - chr4_4:8400879-8400898 Msa0667800:exon 50.0%
CACTTAGGGACCAAACCAAG+TGG - chr4_4:8401013-8401032 Msa0667800:CDS 50.0%
TGTGTTTCGCCCCTGCAAAT+AGG - chr4_4:8402019-8402038 Msa0667800:CDS 50.0%
TAAACGCCGCCTATTTGCAG+GGG + chr4_4:8402551-8402570 None:intergenic 50.0%
GTCCCTGTAATCGCTAATCC+TGG - chr4_4:8402058-8402077 Msa0667800:CDS 50.0%
GTCCCTGTAATCGCTAATCC+TGG + chr4_4:8402058-8402077 None:intergenic 50.0%
CTTCGGTAATTAACTGCCGC+AGG + chr4_4:8403167-8403186 None:intergenic 50.0%
CTGCAGCAGGTTCAGAACTT+CGG + chr4_4:8403184-8403203 None:intergenic 50.0%
AGGGCTGGGAATTGAGAAGA+TGG - chr4_4:8403609-8403628 Msa0667800:intron 50.0%
CTTCGGTAGTTAACTGCTGC+AGG - chr4_4:8403885-8403904 Msa0667800:intron 50.0%
TCGGTAGTTAACTGCTGCAG+GGG - chr4_4:8403887-8403906 Msa0667800:intron 50.0%
! CCAAGAGTGAGATCAGGTTG+AGG + chr4_4:8404556-8404575 None:intergenic 50.0%
CCTCAACCTGATCTCACTCT+TGG - chr4_4:8404553-8404572 Msa0667800:intron 50.0%
GAGAGACCAAGAGTGAGATC+AGG + chr4_4:8404562-8404581 None:intergenic 50.0%
TCTGGGCTTCAAGTACGTAG+AGG - chr4_4:8404634-8404653 Msa0667800:intron 50.0%
! TATTTTGCTCGGGTAGACCG+TGG - chr4_4:8405164-8405183 Msa0667800:intron 50.0%
!! ATGCTTAAAGAGTGCCCTGC+GGG + chr4_4:8405251-8405270 None:intergenic 50.0%
!! GATGCTTAAAGAGTGCCCTG+CGG + chr4_4:8405252-8405271 None:intergenic 50.0%
!! GTGCTTAAAGAGTGTCCTGG+AGG - chr4_4:8405364-8405383 Msa0667800:intron 50.0%
GTGTGGAACTATGGAAGCAG+AGG - chr4_4:8405956-8405975 Msa0667800:CDS 50.0%
TGGAACTATGGAAGCAGAGG+TGG - chr4_4:8405959-8405978 Msa0667800:CDS 50.0%
!! TGGACTCGAATCACTGGCTC+TGG + chr4_4:8400547-8400566 None:intergenic 55.0%
! TCTCGGAGGCGTGTAGAGAA+TGG - chr4_4:8400776-8400795 Msa0667800:three_prime_UTR 55.0%
! CTCGGAGGCGTGTAGAGAAT+GGG - chr4_4:8400777-8400796 Msa0667800:three_prime_UTR 55.0%
! TCGGAGGCGTGTAGAGAATG+GGG - chr4_4:8400778-8400797 Msa0667800:three_prime_UTR 55.0%
GAAGGGAAGGCCACTTGGTT+TGG + chr4_4:8401026-8401045 None:intergenic 55.0%
AGTAGGAAGGGAAGGCCACT+TGG + chr4_4:8401031-8401050 None:intergenic 55.0%
GTTTCGCCCCTGCAAATAGG+CGG - chr4_4:8402022-8402041 Msa0667800:CDS 55.0%
TCACTGCCACGTCACCAGAT+TGG + chr4_4:8402136-8402155 None:intergenic 55.0%
! GTGGTGGAACACGTGTGTGT+CGG - chr4_4:8403695-8403714 Msa0667800:intron 55.0%
! TCTTCGGCACTTAAGTGCCG+AGG - chr4_4:8403786-8403805 Msa0667800:intron 55.0%
TCTTGTTAACGAGTGCCCGC+AGG - chr4_4:8405233-8405252 Msa0667800:intron 55.0%
CTTGTTAACGAGTGCCCGCA+GGG - chr4_4:8405234-8405253 Msa0667800:intron 55.0%
! GTCTTGTTAACGGTGCCTCC+AGG + chr4_4:8405382-8405401 None:intergenic 55.0%
! GTCATTGGTGGGTAGAGTGC+TGG + chr4_4:8405606-8405625 None:intergenic 55.0%
GGAGACGCTAAAGCGCGTCT+CGG - chr4_4:8400759-8400778 Msa0667800:three_prime_UTR 60.0%
CGTCGGCAGTTAACTGCCGA+AGG - chr4_4:8403830-8403849 Msa0667800:intron 60.0%
CTCTCCTCTCACTCTGACCC+TGG - chr4_4:8404577-8404596 Msa0667800:intron 60.0%
TCCTCTCACTCTGACCCTGG+TGG - chr4_4:8404580-8404599 Msa0667800:intron 60.0%
ACCACCAGGGTCAGAGTGAG+AGG + chr4_4:8404584-8404603 None:intergenic 60.0%
CGAGAACGAGAAGCTCCGCG+AGG - chr4_4:8400738-8400757 Msa0667800:three_prime_UTR 65.0%
CGCGCTTTAGCGTCTCCTCG+CGG + chr4_4:8400756-8400775 None:intergenic 65.0%
GACGCTAAAGCGCGTCTCGG+AGG - chr4_4:8400762-8400781 Msa0667800:three_prime_UTR 65.0%
AGCAGAGGTGGCCCTGAGCA+TGG - chr4_4:8405971-8405990 Msa0667800:CDS 65.0%
GCAGAGGTGGCCCTGAGCAT+GGG - chr4_4:8405972-8405991 Msa0667800:CDS 65.0%
TGGCCCTGAGCATGGGCAGA+AGG - chr4_4:8405979-8405998 Msa0667800:CDS 65.0%
GGCCCTGAGCATGGGCAGAA+GGG - chr4_4:8405980-8405999 Msa0667800:CDS 65.0%
GCCCTGAGCATGGGCAGAAG+GGG - chr4_4:8405981-8406000 Msa0667800:CDS 65.0%
CCCCCTTCTGCCCATGCTCA+GGG + chr4_4:8405985-8406004 None:intergenic 65.0%
CCCTGAGCATGGGCAGAAGG+GGG - chr4_4:8405982-8406001 Msa0667800:CDS 65.0%
CCTGAGCATGGGCAGAAGGG+GGG - chr4_4:8405983-8406002 Msa0667800:CDS 65.0%
CCCCCCTTCTGCCCATGCTC+AGG + chr4_4:8405986-8406005 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 8400316 8406271 8400316 ID=Msa0667800;Name=Msa0667800
chr4_4 mRNA 8400316 8406271 8400316 ID=Msa0667800-mRNA-1;Parent=Msa0667800;Name=Msa0667800-mRNA-1;_AED=0.04;_eAED=0.04;_QI=210|1|1|1|1|1|3|564|371
chr4_4 exon 8400316 8401128 8400316 ID=Msa0667800-mRNA-1:exon:2734;Parent=Msa0667800-mRNA-1
chr4_4 exon 8401864 8402197 8401864 ID=Msa0667800-mRNA-1:exon:2733;Parent=Msa0667800-mRNA-1
chr4_4 exon 8405529 8406271 8405529 ID=Msa0667800-mRNA-1:exon:2732;Parent=Msa0667800-mRNA-1
chr4_4 five_prime_UTR 8406062 8406271 8406062 ID=Msa0667800-mRNA-1:five_prime_utr;Parent=Msa0667800-mRNA-1
chr4_4 CDS 8405529 8406061 8405529 ID=Msa0667800-mRNA-1:cds;Parent=Msa0667800-mRNA-1
chr4_4 CDS 8401864 8402197 8401864 ID=Msa0667800-mRNA-1:cds;Parent=Msa0667800-mRNA-1
chr4_4 CDS 8400880 8401128 8400880 ID=Msa0667800-mRNA-1:cds;Parent=Msa0667800-mRNA-1
chr4_4 three_prime_UTR 8400316 8400879 8400316 ID=Msa0667800-mRNA-1:three_prime_utr;Parent=Msa0667800-mRNA-1
Gene Sequence

>Msa0667800

ATGGCTAGTGAAGGTTGGCCAGAGCCAGTGATTCGAGTCCAAGCCTTAGCTGAAAGTAGCATAAGCTCAATCCCTCAACGTTTCATCAAACCAAAATCCCAAAGACCTACCACAACAAACTCTCTCACTAGCCAAACTTTTCATCATGTTCATGATGAAAATGACAACAATAACATCAATATTCCAGTTATTGATTTACAACACTTATATGGCGAGAACGAGAAGCTCCGCGAGGAGACGCTAAAGCGCGTCTCGGAGGCGTGTAGAGAATGGGGATTCTTCCAAGTTTTAAACCATGGAGTTAGTCATGACTTGATGAAACGTGCTAGGGAGGTTTGGCGTGAGTTCTTTGAGCTACCACTTGAGGTGAAAGAGGAGTATGCTAATTCTCCTACCACTTATGAGGGATATGGAAGTCGTTTGGGAGTGAAAAAAGGTGCCATTTTGGATTGGAGTGACTACTTTTTTCTTCATTACATGCCTTGTTCACTTAGGGACCAAACCAAGTGGCCTTCCCTTCCTACTTCTTTAAGGAATGTGATCAATGAATATGGTGAAGAAGTTGTTAAGTTAGGAGGAAGAGTTCTTGAGTTATTGTCAATTAATCTTGGCCTTAATGATGATTTCCTTCTAAATGCATTTGGTGGTGAAAATGATCTTGGTGGTTGCTTAAGGGTGAATTTCTATCCAAAGTGTCCTCAACCTGATCTCACTCTTGGTCTCTCCTCTCACTCTGACCCTGGTGGTTTGACCATTCTACTTCCTGATGATTATGTATCTGGGCTTCAAGTACGTAGAGGAGAAGATTGGATCACAGTTAAGCCTGTCCCAAATGCTTTCATCATCAATATTGGTGACCAAATTCAGGTGCTAAGCAATGCAATATACAAAAGCATAGAACACAGAGTAATTGTGAACTCCAACAAAGATAGAGTTTCATTGGCCTTCTTTTATAATCCAAGGAGTGATTTACTAATTCAACCTGCTAAGGAACTTGTCACTAAGGATAGGCCAGCACTCTACCCACCAATGACATTTGATGAATATAGAGTTTACATTAGGACAAAAGGGCCTTGTGGAAAAGCTCAAGTAGAATCTTTGGTTCCCCAAAAGTGA
Protein sequence

>Msa0667800

MASEGWPEPVIRVQALAESSISSIPQRFIKPKSQRPTTTNSLTSQTFHHVHDENDNNNINIPVIDLQHLYGENEKLREETLKRVSEACREWGFFQVLNHGVSHDLMKRAREVWREFFELPLEVKEEYANSPTTYEGYGSRLGVKKGAILDWSDYFFLHYMPCSLRDQTKWPSLPTSLRNVINEYGEEVVKLGGRVLELLSINLGLNDDFLLNAFGGENDLGGCLRVNFYPKCPQPDLTLGLSSHSDPGGLTILLPDDYVSGLQVRRGEDWITVKPVPNAFIINIGDQIQVLSNAIYKSIEHRVIVNSNKDRVSLAFFYNPRSDLLIQPAKELVTKDRPALYPPMTFDEYRVYIRTKGPCGKAQVESLVPQK*